CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 211 | A211V | nonsyn | gCt | gTt | 8450 | 8450 | 1 | 28904-28906 |
Details of the mutation A211V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 211 | A211V | gCt | gTt | 8450 | 8450 | All | 0.001616 |
N | 211 | A211V | gCt | gTt | 2428 | 2428 | B.1.1.317 | 0.999588 |
N | 211 | A211V | gCt | gTt | 1905 | 1905 | B.1.1.176 | 0.836995 |
N | 211 | A211V | gCt | gTt | 737 | 737 | Q.3 | 0.106889 |
N | 211 | A211V | gCt | gTt | 633 | 633 | B.1.1.7 | 0.000567 |
N | 211 | A211V | gCt | gTt | 332 | 332 | AY.75 | 0.018599 |
N | 211 | A211V | gCt | gTt | 275 | 275 | B.1.1.519 | 0.01092 |
N | 211 | A211V | gCt | gTt | 166 | 166 | B.1.1 | 0.003011 |
N | 211 | A211V | gCt | gTt | 156 | 156 | AY.4 | 0.000243 |
N | 211 | A211V | gCt | gTt | 152 | 152 | AY.120 | 0.005651 |
N | 211 | A211V | gCt | gTt | 148 | 148 | B.1.617.2 | 0.000557 |
N | 211 | A211V | gCt | gTt | 139 | 139 | B.1 | 0.001273 |
N | 211 | A211V | gCt | gTt | 124 | 124 | B.1.36 | 0.018092 |
N | 211 | A211V | gCt | gTt | 116 | 116 | C.38 | 0.935484 |
N | 211 | A211V | gCt | gTt | 105 | 105 | AS.1 | 1 |
N | 211 | A211V | gCt | gTt | 79 | 79 | B.1.2 | 0.000696 |
N | 211 | A211V | gCt | gTt | 64 | 64 | AS.2 | 1 |
N | 211 | A211V | gCt | gTt | 64 | 64 | B.1.438.1 | 0.006865 |
N | 211 | A211V | gCt | gTt | 46 | 46 | AY.43 | 0.000204 |
N | 211 | A211V | gCt | gTt | 39 | 39 | AY.44 | 0.000237 |
N | 211 | A211V | gCt | gTt | 36 | 36 | AY.25 | 0.000217 |
N | 211 | A211V | gCt | gTt | 33 | 33 | AY.74 | 0.003816 |
N | 211 | A211V | gCt | gTt | 33 | 33 | P.1 | 0.00052 |
N | 211 | A211V | gCt | gTt | 30 | 30 | AY.39 | 0.000741 |
N | 211 | A211V | gCt | gTt | 29 | 29 | B.1.36.29 | 0.015003 |
N | 211 | A211V | gCt | gTt | 27 | 27 | AY.103 | 0.000168 |
N | 211 | A211V | gCt | gTt | 27 | 27 | N.5 | 0.047703 |
N | 211 | A211V | gCt | gTt | 25 | 25 | AY.26 | 0.000708 |
N | 211 | A211V | gCt | gTt | 25 | 25 | AY.3 | 0.000249 |
N | 211 | A211V | gCt | gTt | 21 | 21 | AY.100 | 0.000966 |
N | 211 | A211V | gCt | gTt | 21 | 21 | B.1.1.10 | 0.023411 |
N | 211 | A211V | gCt | gTt | 17 | 17 | B.1.1.521 | 0.090909 |
N | 211 | A211V | gCt | gTt | 15 | 15 | AY.9.2 | 0.000551 |
N | 211 | A211V | gCt | gTt | 14 | 14 | AY.4.2 | 0.000304 |
N | 211 | A211V | gCt | gTt | 13 | 13 | B.1.177 | 0.000171 |
N | 211 | A211V | gCt | gTt | 12 | 12 | AY.102 | 0.000318 |
N | 211 | A211V | gCt | gTt | 12 | 12 | AY.98.1 | 0.000581 |
N | 211 | A211V | gCt | gTt | 12 | 12 | B.1.1.37 | 0.002314 |
N | 211 | A211V | gCt | gTt | 11 | 11 | B.1.539 | 0.192982 |
N | 211 | A211V | gCt | gTt | 11 | 11 | B.1.639 | 0.23913 |
N | 211 | A211V | gCt | gTt | 10 | 10 | A.21 | 0.027701 |
N | 211 | A211V | gCt | gTt | 10 | 10 | AY.117 | 0.000845 |
N | 211 | A211V | gCt | gTt | 10 | 10 | AY.46 | 0.001041 |
N | 211 | A211V | gCt | gTt | 9 | 9 | AY.107 | 0.004194 |
N | 211 | A211V | gCt | gTt | 8 | 8 | B.1.1.33 | 0.003367 |
N | 211 | A211V | gCt | gTt | 7 | 7 | AY.119 | 0.000247 |
N | 211 | A211V | gCt | gTt | 7 | 7 | B.1.1.306 | 0.003069 |
N | 211 | A211V | gCt | gTt | 7 | 7 | B.1.258 | 0.000466 |
N | 211 | A211V | gCt | gTt | 7 | 7 | B.1.637 | 0.000512 |
N | 211 | A211V | gCt | gTt | 6 | 6 | AY.54 | 0.000572 |
N | 211 | A211V | gCt | gTt | 6 | 6 | AY.98 | 0.000474 |
N | 211 | A211V | gCt | gTt | 6 | 6 | B.1.456 | 0.019608 |
N | 211 | A211V | gCt | gTt | 5 | 5 | AY.47 | 0.000156 |
N | 211 | A211V | gCt | gTt | 5 | 5 | AY.6 | 0.000206 |
N | 211 | A211V | gCt | gTt | 5 | 5 | AY.62 | 0.002179 |
N | 211 | A211V | gCt | gTt | 5 | 5 | AY.71 | 0.002375 |
N | 211 | A211V | gCt | gTt | 5 | 5 | B.1.1.207 | 0.00591 |
N | 211 | A211V | gCt | gTt | 5 | 5 | B.1.1.253 | 0.012531 |
N | 211 | A211V | gCt | gTt | 5 | 5 | B.1.1.27 | 0.028249 |
N | 211 | A211V | gCt | gTt | 5 | 5 | B.1.1.28 | 0.001556 |
N | 211 | A211V | gCt | gTt | 5 | 5 | B.1.1.369 | 0.002231 |
N | 211 | A211V | gCt | gTt | 5 | 5 | B.1.1.392 | 0.263158 |
N | 211 | A211V | gCt | gTt | 5 | 5 | B.1.160 | 0.000156 |
N | 211 | A211V | gCt | gTt | 4 | 4 | AY.20 | 0.000155 |
N | 211 | A211V | gCt | gTt | 4 | 4 | AY.29 | 0.000063 |
N | 211 | A211V | gCt | gTt | 4 | 4 | B.1.1.1 | 0.001307 |
N | 211 | A211V | gCt | gTt | 4 | 4 | B.1.1.222 | 0.000816 |
N | 211 | A211V | gCt | gTt | 4 | 4 | B.1.429 | 0.000094 |
N | 211 | A211V | gCt | gTt | 4 | 4 | P.1.14 | 0.000191 |
N | 211 | A211V | gCt | gTt | 3 | 3 | AY.24 | 0.001293 |
N | 211 | A211V | gCt | gTt | 3 | 3 | AY.36 | 0.000445 |
N | 211 | A211V | gCt | gTt | 3 | 3 | AY.45 | 0.000365 |
N | 211 | A211V | gCt | gTt | 3 | 3 | B.1.1.318 | 0.000905 |
N | 211 | A211V | gCt | gTt | 3 | 3 | B.1.1.57 | 0.034483 |
N | 211 | A211V | gCt | gTt | 3 | 3 | B.1.36.17 | 0.001482 |
N | 211 | A211V | gCt | gTt | 3 | 3 | B.1.480 | 0.007463 |
N | 211 | A211V | gCt | gTt | 3 | 3 | B.1.568 | 0.003333 |
N | 211 | A211V | gCt | gTt | 3 | 3 | C.36.3.1 | 0.008152 |
N | 211 | A211V | gCt | gTt | 2 | 2 | AY.113 | 0.000285 |
N | 211 | A211V | gCt | gTt | 2 | 2 | AY.61 | 0.00021 |
N | 211 | A211V | gCt | gTt | 2 | 2 | AY.75.1 | 0.000361 |
N | 211 | A211V | gCt | gTt | 2 | 2 | AY.78 | 0.003082 |
N | 211 | A211V | gCt | gTt | 2 | 2 | AY.93 | 0.000546 |
N | 211 | A211V | gCt | gTt | 2 | 2 | B.1.1.198 | 0.002937 |
N | 211 | A211V | gCt | gTt | 2 | 2 | B.1.1.277 | 0.001517 |
N | 211 | A211V | gCt | gTt | 2 | 2 | B.1.1.464 | 0.002946 |
N | 211 | A211V | gCt | gTt | 2 | 2 | B.1.111 | 0.00235 |
N | 211 | A211V | gCt | gTt | 2 | 2 | B.1.128 | 0.001271 |
N | 211 | A211V | gCt | gTt | 2 | 2 | B.1.234 | 0.000264 |
N | 211 | A211V | gCt | gTt | 2 | 2 | B.1.36.8 | 0.002 |
N | 211 | A211V | gCt | gTt | 2 | 2 | B.1.408 | 0.00738 |
N | 211 | A211V | gCt | gTt | 2 | 2 | B.1.425 | 0.005988 |
N | 211 | A211V | gCt | gTt | 2 | 2 | B.1.526 | 0.000047 |
N | 211 | A211V | gCt | gTt | 2 | 2 | B.1.576 | 0.001813 |
N | 211 | A211V | gCt | gTt | 2 | 2 | B.1.577 | 0.001375 |
N | 211 | A211V | gCt | gTt | 2 | 2 | B.1.621 | 0.000177 |
N | 211 | A211V | gCt | gTt | 2 | 2 | D.2 | 0.00015 |
N | 211 | A211V | gCt | gTt | 2 | 2 | P.1.1 | 0.000635 |
N | 211 | A211V | gCt | gTt | 2 | 2 | P.1.15 | 0.000465 |
N | 211 | A211V | gCt | gTt | 2 | 2 | P.1.17 | 0.000324 |
N | 211 | A211V | gCt | gTt | 2 | 2 | P.1.7 | 0.000639 |
N | 211 | A211V | gCt | gTt | 2 | 2 | P.2 | 0.000373 |
N | 211 | A211V | gCt | gTt | 1 | 1 | A | 0.000387 |
N | 211 | A211V | gCt | gTt | 1 | 1 | A.2.5.2 | 0.001572 |
N | 211 | A211V | gCt | gTt | 1 | 1 | A.23.1 | 0.000704 |
N | 211 | A211V | gCt | gTt | 1 | 1 | AY.111 | 0.000183 |
N | 211 | A211V | gCt | gTt | 1 | 1 | AY.114 | 0.000231 |
N | 211 | A211V | gCt | gTt | 1 | 1 | AY.118 | 0.000063 |
N | 211 | A211V | gCt | gTt | 1 | 1 | AY.12 | 0.000316 |
N | 211 | A211V | gCt | gTt | 1 | 1 | AY.121 | 0.000135 |
N | 211 | A211V | gCt | gTt | 1 | 1 | AY.16 | 0.00038 |
N | 211 | A211V | gCt | gTt | 1 | 1 | AY.16.1 | 0.00047 |
N | 211 | A211V | gCt | gTt | 1 | 1 | AY.21 | 0.001898 |
N | 211 | A211V | gCt | gTt | 1 | 1 | AY.3.1 | 0.000085 |
N | 211 | A211V | gCt | gTt | 1 | 1 | AY.34 | 0.000097 |
N | 211 | A211V | gCt | gTt | 1 | 1 | AY.4.1 | 0.000737 |
N | 211 | A211V | gCt | gTt | 1 | 1 | AY.4.2.1 | 0.000149 |
N | 211 | A211V | gCt | gTt | 1 | 1 | AY.42 | 0.00004 |
N | 211 | A211V | gCt | gTt | 1 | 1 | AY.46.2 | 0.000635 |
N | 211 | A211V | gCt | gTt | 1 | 1 | AY.46.6 | 0.000072 |
N | 211 | A211V | gCt | gTt | 1 | 1 | AY.5 | 0.000021 |
N | 211 | A211V | gCt | gTt | 1 | 1 | AY.53 | 0.000288 |
N | 211 | A211V | gCt | gTt | 1 | 1 | AY.65 | 0.000533 |
N | 211 | A211V | gCt | gTt | 1 | 1 | AY.67 | 0.000464 |
N | 211 | A211V | gCt | gTt | 1 | 1 | AY.79 | 0.001211 |
N | 211 | A211V | gCt | gTt | 1 | 1 | AY.84 | 0.000437 |
N | 211 | A211V | gCt | gTt | 1 | 1 | AY.85 | 0.000427 |
N | 211 | A211V | gCt | gTt | 1 | 1 | AY.9 | 0.000068 |
N | 211 | A211V | gCt | gTt | 1 | 1 | AY.90 | 0.000684 |
N | 211 | A211V | gCt | gTt | 1 | 1 | AY.99.1 | 0.001553 |
N | 211 | A211V | gCt | gTt | 1 | 1 | AY.99.2 | 0.000092 |
N | 211 | A211V | gCt | gTt | 1 | 1 | B.1.1.153 | 0.001095 |
N | 211 | A211V | gCt | gTt | 1 | 1 | B.1.1.25 | 0.000569 |
N | 211 | A211V | gCt | gTt | 1 | 1 | B.1.1.279 | 0.001121 |
N | 211 | A211V | gCt | gTt | 1 | 1 | B.1.1.291 | 0.000742 |
N | 211 | A211V | gCt | gTt | 1 | 1 | B.1.1.354 | 0.004386 |
N | 211 | A211V | gCt | gTt | 1 | 1 | B.1.1.372 | 0.000689 |
N | 211 | A211V | gCt | gTt | 1 | 1 | B.1.1.39 | 0.00051 |
N | 211 | A211V | gCt | gTt | 1 | 1 | B.1.1.397 | 0.002252 |
N | 211 | A211V | gCt | gTt | 1 | 1 | B.1.1.434 | 0.000349 |
N | 211 | A211V | gCt | gTt | 1 | 1 | B.1.1.448 | 0.002033 |
N | 211 | A211V | gCt | gTt | 1 | 1 | B.1.1.523 | 0.001563 |
N | 211 | A211V | gCt | gTt | 1 | 1 | B.1.1.61 | 0.008772 |
N | 211 | A211V | gCt | gTt | 1 | 1 | B.1.108 | 0.005814 |
N | 211 | A211V | gCt | gTt | 1 | 1 | B.1.157 | 0.002985 |
N | 211 | A211V | gCt | gTt | 1 | 1 | B.1.177.15 | 0.000631 |
N | 211 | A211V | gCt | gTt | 1 | 1 | B.1.177.43 | 0.001477 |
N | 211 | A211V | gCt | gTt | 1 | 1 | B.1.177.60 | 0.000218 |
N | 211 | A211V | gCt | gTt | 1 | 1 | B.1.212 | 0.016667 |
N | 211 | A211V | gCt | gTt | 1 | 1 | B.1.214.2 | 0.0006 |
N | 211 | A211V | gCt | gTt | 1 | 1 | B.1.221.1 | 0.002907 |
N | 211 | A211V | gCt | gTt | 1 | 1 | B.1.241 | 0.000812 |
N | 211 | A211V | gCt | gTt | 1 | 1 | B.1.247 | 0.014925 |
N | 211 | A211V | gCt | gTt | 1 | 1 | B.1.346 | 0.001311 |
N | 211 | A211V | gCt | gTt | 1 | 1 | B.1.349 | 0.000715 |
N | 211 | A211V | gCt | gTt | 1 | 1 | B.1.351 | 0.00003 |
N | 211 | A211V | gCt | gTt | 1 | 1 | B.1.36.10 | 0.004785 |
N | 211 | A211V | gCt | gTt | 1 | 1 | B.1.367 | 0.000792 |
N | 211 | A211V | gCt | gTt | 1 | 1 | B.1.399 | 0.001934 |
N | 211 | A211V | gCt | gTt | 1 | 1 | B.1.416 | 0.001269 |
N | 211 | A211V | gCt | gTt | 1 | 1 | B.1.423 | 0.010204 |
N | 211 | A211V | gCt | gTt | 1 | 1 | B.1.427 | 0.00005 |
N | 211 | A211V | gCt | gTt | 1 | 1 | B.1.468 | 0.005714 |
N | 211 | A211V | gCt | gTt | 1 | 1 | B.1.515 | 0.014493 |
N | 211 | A211V | gCt | gTt | 1 | 1 | B.1.595 | 0.000261 |
N | 211 | A211V | gCt | gTt | 1 | 1 | B.1.612 | 0.002653 |
N | 211 | A211V | gCt | gTt | 1 | 1 | B.1.617.1 | 0.000129 |
N | 211 | A211V | gCt | gTt | 1 | 1 | B.1.619 | 0.000871 |
N | 211 | A211V | gCt | gTt | 1 | 1 | B.1.628 | 0.000352 |
N | 211 | A211V | gCt | gTt | 1 | 1 | B.1.94 | 0.027027 |
N | 211 | A211V | gCt | gTt | 1 | 1 | B.40 | 0.000364 |
N | 211 | A211V | gCt | gTt | 1 | 1 | C.1.2 | 0.004255 |
N | 211 | A211V | gCt | gTt | 1 | 1 | P.1.12 | 0.000484 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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