CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 208 | A208del | del | GCT | --- | 8461 | 8461 | 1 | 28895-28897 |
Details of the mutation A208del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 208 | A208del | GCT | --- | 8461 | 8461 | All | 0.001618 |
N | 208 | A208del | GCT | --- | 3106 | 3106 | B.1.1.318 | 0.937236 |
N | 208 | A208del | GCT | --- | 1186 | 1186 | AZ.2 | 0.973727 |
N | 208 | A208del | GCT | --- | 1153 | 1153 | AZ.1 | 1 |
N | 208 | A208del | GCT | --- | 621 | 621 | AZ.3 | 0.943769 |
N | 208 | A208del | GCT | --- | 589 | 589 | B.1.1.7 | 0.000527 |
N | 208 | A208del | GCT | --- | 279 | 279 | AZ.4 | 0.936242 |
N | 208 | A208del | GCT | --- | 274 | 274 | AZ.5 | 0.961404 |
N | 208 | A208del | GCT | --- | 121 | 121 | AZ.2.1 | 0.98374 |
N | 208 | A208del | GCT | --- | 118 | 118 | AZ.6 | 0.991597 |
N | 208 | A208del | GCT | --- | 74 | 74 | B.1.1 | 0.001342 |
N | 208 | A208del | GCT | --- | 68 | 68 | B.1.617.2 | 0.000256 |
N | 208 | A208del | GCT | --- | 51 | 51 | AY.4 | 0.000079 |
N | 208 | A208del | GCT | --- | 48 | 48 | AY.103 | 0.000298 |
N | 208 | A208del | GCT | --- | 46 | 46 | AY.118 | 0.002882 |
N | 208 | A208del | GCT | --- | 46 | 46 | AY.74 | 0.00532 |
N | 208 | A208del | GCT | --- | 44 | 44 | B.1 | 0.000403 |
N | 208 | A208del | GCT | --- | 39 | 39 | AY.25 | 0.000235 |
N | 208 | A208del | GCT | --- | 34 | 34 | B.1.1.93 | 0.871795 |
N | 208 | A208del | GCT | --- | 31 | 31 | AY.43 | 0.000137 |
N | 208 | A208del | GCT | --- | 30 | 30 | B.1.1.370 | 0.379747 |
N | 208 | A208del | GCT | --- | 28 | 28 | AY.44 | 0.00017 |
N | 208 | A208del | GCT | --- | 27 | 27 | AY.3 | 0.000269 |
N | 208 | A208del | GCT | --- | 26 | 26 | AY.100 | 0.001196 |
N | 208 | A208del | GCT | --- | 23 | 23 | Q.2 | 0.01411 |
N | 208 | A208del | GCT | --- | 21 | 21 | B.1.1.222 | 0.004284 |
N | 208 | A208del | GCT | --- | 20 | 20 | AY.4.2.1 | 0.00298 |
N | 208 | A208del | GCT | --- | 18 | 18 | AY.52 | 0.014658 |
N | 208 | A208del | GCT | --- | 13 | 13 | AY.47 | 0.000404 |
N | 208 | A208del | GCT | --- | 13 | 13 | AY.99.2 | 0.001198 |
N | 208 | A208del | GCT | --- | 13 | 13 | B.1.1.519 | 0.000516 |
N | 208 | A208del | GCT | --- | 10 | 10 | AY.23 | 0.000697 |
N | 208 | A208del | GCT | --- | 10 | 10 | B.1.214 | 0.03663 |
N | 208 | A208del | GCT | --- | 9 | 9 | AY.26 | 0.000255 |
N | 208 | A208del | GCT | --- | 9 | 9 | AY.45 | 0.001095 |
N | 208 | A208del | GCT | --- | 8 | 8 | AT.1 | 0.041026 |
N | 208 | A208del | GCT | --- | 8 | 8 | AY.21 | 0.01518 |
N | 208 | A208del | GCT | --- | 8 | 8 | D.2 | 0.0006 |
N | 208 | A208del | GCT | --- | 7 | 7 | Q.8 | 0.001154 |
N | 208 | A208del | GCT | --- | 6 | 6 | AY.119 | 0.000212 |
N | 208 | A208del | GCT | --- | 6 | 6 | AY.75 | 0.000336 |
N | 208 | A208del | GCT | --- | 6 | 6 | AY.85 | 0.002563 |
N | 208 | A208del | GCT | --- | 6 | 6 | P.1 | 0.000095 |
N | 208 | A208del | GCT | --- | 5 | 5 | AY.102 | 0.000133 |
N | 208 | A208del | GCT | --- | 5 | 5 | AY.27 | 0.000324 |
N | 208 | A208del | GCT | --- | 5 | 5 | AY.29 | 0.000079 |
N | 208 | A208del | GCT | --- | 5 | 5 | B.1.349 | 0.003574 |
N | 208 | A208del | GCT | --- | 5 | 5 | B.1.617.1 | 0.000645 |
N | 208 | A208del | GCT | --- | 4 | 4 | AY.101 | 0.001962 |
N | 208 | A208del | GCT | --- | 4 | 4 | AY.120 | 0.000149 |
N | 208 | A208del | GCT | --- | 4 | 4 | AY.39 | 0.000099 |
N | 208 | A208del | GCT | --- | 4 | 4 | AY.4.2 | 0.000087 |
N | 208 | A208del | GCT | --- | 4 | 4 | AY.59 | 0.002119 |
N | 208 | A208del | GCT | --- | 4 | 4 | AY.9.1 | 0.000335 |
N | 208 | A208del | GCT | --- | 4 | 4 | B.1.1.232 | 0.00726 |
N | 208 | A208del | GCT | --- | 4 | 4 | B.1.243 | 0.000278 |
N | 208 | A208del | GCT | --- | 4 | 4 | B.1.526 | 0.000094 |
N | 208 | A208del | GCT | --- | 4 | 4 | B.1.576 | 0.003626 |
N | 208 | A208del | GCT | --- | 3 | 3 | AY.20 | 0.000117 |
N | 208 | A208del | GCT | --- | 3 | 3 | AY.30 | 0.001187 |
N | 208 | A208del | GCT | --- | 3 | 3 | AY.36 | 0.000445 |
N | 208 | A208del | GCT | --- | 3 | 3 | AY.4.5 | 0.000322 |
N | 208 | A208del | GCT | --- | 3 | 3 | AY.46 | 0.000312 |
N | 208 | A208del | GCT | --- | 3 | 3 | AY.5 | 0.000062 |
N | 208 | A208del | GCT | --- | 3 | 3 | AY.63 | 0.001161 |
N | 208 | A208del | GCT | --- | 3 | 3 | B | 0.000383 |
N | 208 | A208del | GCT | --- | 3 | 3 | B.1.1.1 | 0.00098 |
N | 208 | A208del | GCT | --- | 3 | 3 | B.1.1.170 | 0.003741 |
N | 208 | A208del | GCT | --- | 3 | 3 | B.1.1.434 | 0.001046 |
N | 208 | A208del | GCT | --- | 3 | 3 | B.1.1.70 | 0.001023 |
N | 208 | A208del | GCT | --- | 3 | 3 | B.1.2 | 0.000026 |
N | 208 | A208del | GCT | --- | 3 | 3 | B.1.36 | 0.000438 |
N | 208 | A208del | GCT | --- | 3 | 3 | C.37 | 0.000348 |
N | 208 | A208del | GCT | --- | 3 | 3 | P.1.14 | 0.000143 |
N | 208 | A208del | GCT | --- | 3 | 3 | P.2 | 0.00056 |
N | 208 | A208del | GCT | --- | 2 | 2 | AY.110 | 0.000225 |
N | 208 | A208del | GCT | --- | 2 | 2 | AY.117 | 0.000169 |
N | 208 | A208del | GCT | --- | 2 | 2 | AY.33 | 0.000134 |
N | 208 | A208del | GCT | --- | 2 | 2 | AY.34 | 0.000194 |
N | 208 | A208del | GCT | --- | 2 | 2 | AY.40 | 0.001929 |
N | 208 | A208del | GCT | --- | 2 | 2 | AY.50 | 0.001599 |
N | 208 | A208del | GCT | --- | 2 | 2 | AY.54 | 0.000191 |
N | 208 | A208del | GCT | --- | 2 | 2 | AY.7.2 | 0.001119 |
N | 208 | A208del | GCT | --- | 2 | 2 | AY.9.2 | 0.000073 |
N | 208 | A208del | GCT | --- | 2 | 2 | B.1.1.142 | 0.035088 |
N | 208 | A208del | GCT | --- | 2 | 2 | B.1.1.291 | 0.001485 |
N | 208 | A208del | GCT | --- | 2 | 2 | B.1.1.307 | 0.005063 |
N | 208 | A208del | GCT | --- | 2 | 2 | B.1.1.312 | 0.003824 |
N | 208 | A208del | GCT | --- | 2 | 2 | B.1.1.33 | 0.000842 |
N | 208 | A208del | GCT | --- | 2 | 2 | B.1.1.416 | 0.00181 |
N | 208 | A208del | GCT | --- | 2 | 2 | B.1.336 | 0.004878 |
N | 208 | A208del | GCT | --- | 2 | 2 | B.1.351 | 0.000059 |
N | 208 | A208del | GCT | --- | 2 | 2 | B.1.517 | 0.000854 |
N | 208 | A208del | GCT | --- | 2 | 2 | B.1.525 | 0.000226 |
N | 208 | A208del | GCT | --- | 1 | 1 | A.1 | 0.000282 |
N | 208 | A208del | GCT | --- | 1 | 1 | A.23.1 | 0.000704 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.113 | 0.000142 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.116 | 0.000287 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.121 | 0.000135 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.14 | 0.000088 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.16 | 0.00038 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.16.1 | 0.00047 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.24 | 0.000431 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.29.1 | 0.000221 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.32 | 0.000532 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.37 | 0.000316 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.38 | 0.000499 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.39.1 | 0.00004 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.42 | 0.00004 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.46.2 | 0.000635 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.5.4 | 0.000277 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.57 | 0.000656 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.6 | 0.000041 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.61 | 0.000105 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.73 | 0.000665 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.79 | 0.001211 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.92 | 0.000287 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.98 | 0.000079 |
N | 208 | A208del | GCT | --- | 1 | 1 | AY.98.1 | 0.000048 |
N | 208 | A208del | GCT | --- | 1 | 1 | B.1.1.214 | 0.000055 |
N | 208 | A208del | GCT | --- | 1 | 1 | B.1.1.237 | 0.005405 |
N | 208 | A208del | GCT | --- | 1 | 1 | B.1.1.27 | 0.00565 |
N | 208 | A208del | GCT | --- | 1 | 1 | B.1.1.301 | 0.001179 |
N | 208 | A208del | GCT | --- | 1 | 1 | B.1.1.303 | 0.002762 |
N | 208 | A208del | GCT | --- | 1 | 1 | B.1.1.326 | 0.001761 |
N | 208 | A208del | GCT | --- | 1 | 1 | B.1.1.369 | 0.000446 |
N | 208 | A208del | GCT | --- | 1 | 1 | B.1.1.409 | 0.002833 |
N | 208 | A208del | GCT | --- | 1 | 1 | B.1.1.413 | 0.006897 |
N | 208 | A208del | GCT | --- | 1 | 1 | B.1.1.50 | 0.000679 |
N | 208 | A208del | GCT | --- | 1 | 1 | B.1.1.517 | 0.006803 |
N | 208 | A208del | GCT | --- | 1 | 1 | B.1.1.525 | 0.005464 |
N | 208 | A208del | GCT | --- | 1 | 1 | B.1.160 | 0.000031 |
N | 208 | A208del | GCT | --- | 1 | 1 | B.1.177 | 0.000013 |
N | 208 | A208del | GCT | --- | 1 | 1 | B.1.177.7 | 0.000165 |
N | 208 | A208del | GCT | --- | 1 | 1 | B.1.324 | 0.001605 |
N | 208 | A208del | GCT | --- | 1 | 1 | B.1.427 | 0.00005 |
N | 208 | A208del | GCT | --- | 1 | 1 | B.1.465 | 0.003802 |
N | 208 | A208del | GCT | --- | 1 | 1 | B.1.580 | 0.004065 |
N | 208 | A208del | GCT | --- | 1 | 1 | B.1.596 | 0.000087 |
N | 208 | A208del | GCT | --- | 1 | 1 | C.37.1 | 0.002618 |
N | 208 | A208del | GCT | --- | 1 | 1 | C.38 | 0.008065 |
N | 208 | A208del | GCT | --- | 1 | 1 | N.5 | 0.001767 |
N | 208 | A208del | GCT | --- | 1 | 1 | P.1.1 | 0.000318 |
N | 208 | A208del | GCT | --- | 1 | 1 | P.1.15 | 0.000232 |
N | 208 | A208del | GCT | --- | 1 | 1 | P.1.7 | 0.000319 |
N | 208 | A208del | GCT | --- | 1 | 1 | P.1.8 | 0.004785 |
N | 208 | A208del | GCT | --- | 1 | 1 | Q.1 | 0.000126 |
N | 208 | A208del | GCT | --- | 1 | 1 | Q.3 | 0.000145 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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