CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : Mut = A208del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	208	A208del		del	GCT	---	8461	8461	1	28895-28897

Details of the mutation A208del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	208	A208del	GCT	---	8461	8461	All	0.001618
N	208	A208del	GCT	---	3106	3106	B.1.1.318	0.937236
N	208	A208del	GCT	---	1186	1186	AZ.2	0.973727
N	208	A208del	GCT	---	1153	1153	AZ.1	1
N	208	A208del	GCT	---	621	621	AZ.3	0.943769
N	208	A208del	GCT	---	589	589	B.1.1.7	0.000527
N	208	A208del	GCT	---	279	279	AZ.4	0.936242
N	208	A208del	GCT	---	274	274	AZ.5	0.961404
N	208	A208del	GCT	---	121	121	AZ.2.1	0.98374
N	208	A208del	GCT	---	118	118	AZ.6	0.991597
N	208	A208del	GCT	---	74	74	B.1.1	0.001342
N	208	A208del	GCT	---	68	68	B.1.617.2	0.000256
N	208	A208del	GCT	---	51	51	AY.4	0.000079
N	208	A208del	GCT	---	48	48	AY.103	0.000298
N	208	A208del	GCT	---	46	46	AY.118	0.002882
N	208	A208del	GCT	---	46	46	AY.74	0.00532
N	208	A208del	GCT	---	44	44	B.1	0.000403
N	208	A208del	GCT	---	39	39	AY.25	0.000235
N	208	A208del	GCT	---	34	34	B.1.1.93	0.871795
N	208	A208del	GCT	---	31	31	AY.43	0.000137
N	208	A208del	GCT	---	30	30	B.1.1.370	0.379747
N	208	A208del	GCT	---	28	28	AY.44	0.00017
N	208	A208del	GCT	---	27	27	AY.3	0.000269
N	208	A208del	GCT	---	26	26	AY.100	0.001196
N	208	A208del	GCT	---	23	23	Q.2	0.01411
N	208	A208del	GCT	---	21	21	B.1.1.222	0.004284
N	208	A208del	GCT	---	20	20	AY.4.2.1	0.00298
N	208	A208del	GCT	---	18	18	AY.52	0.014658
N	208	A208del	GCT	---	13	13	AY.47	0.000404
N	208	A208del	GCT	---	13	13	AY.99.2	0.001198
N	208	A208del	GCT	---	13	13	B.1.1.519	0.000516
N	208	A208del	GCT	---	10	10	AY.23	0.000697
N	208	A208del	GCT	---	10	10	B.1.214	0.03663
N	208	A208del	GCT	---	9	9	AY.26	0.000255
N	208	A208del	GCT	---	9	9	AY.45	0.001095
N	208	A208del	GCT	---	8	8	AT.1	0.041026
N	208	A208del	GCT	---	8	8	AY.21	0.01518
N	208	A208del	GCT	---	8	8	D.2	0.0006
N	208	A208del	GCT	---	7	7	Q.8	0.001154
N	208	A208del	GCT	---	6	6	AY.119	0.000212
N	208	A208del	GCT	---	6	6	AY.75	0.000336
N	208	A208del	GCT	---	6	6	AY.85	0.002563
N	208	A208del	GCT	---	6	6	P.1	0.000095
N	208	A208del	GCT	---	5	5	AY.102	0.000133
N	208	A208del	GCT	---	5	5	AY.27	0.000324
N	208	A208del	GCT	---	5	5	AY.29	0.000079
N	208	A208del	GCT	---	5	5	B.1.349	0.003574
N	208	A208del	GCT	---	5	5	B.1.617.1	0.000645
N	208	A208del	GCT	---	4	4	AY.101	0.001962
N	208	A208del	GCT	---	4	4	AY.120	0.000149
N	208	A208del	GCT	---	4	4	AY.39	0.000099
N	208	A208del	GCT	---	4	4	AY.4.2	0.000087
N	208	A208del	GCT	---	4	4	AY.59	0.002119
N	208	A208del	GCT	---	4	4	AY.9.1	0.000335
N	208	A208del	GCT	---	4	4	B.1.1.232	0.00726
N	208	A208del	GCT	---	4	4	B.1.243	0.000278
N	208	A208del	GCT	---	4	4	B.1.526	0.000094
N	208	A208del	GCT	---	4	4	B.1.576	0.003626
N	208	A208del	GCT	---	3	3	AY.20	0.000117
N	208	A208del	GCT	---	3	3	AY.30	0.001187
N	208	A208del	GCT	---	3	3	AY.36	0.000445
N	208	A208del	GCT	---	3	3	AY.4.5	0.000322
N	208	A208del	GCT	---	3	3	AY.46	0.000312
N	208	A208del	GCT	---	3	3	AY.5	0.000062
N	208	A208del	GCT	---	3	3	AY.63	0.001161
N	208	A208del	GCT	---	3	3	B	0.000383
N	208	A208del	GCT	---	3	3	B.1.1.1	0.00098
N	208	A208del	GCT	---	3	3	B.1.1.170	0.003741
N	208	A208del	GCT	---	3	3	B.1.1.434	0.001046
N	208	A208del	GCT	---	3	3	B.1.1.70	0.001023
N	208	A208del	GCT	---	3	3	B.1.2	0.000026
N	208	A208del	GCT	---	3	3	B.1.36	0.000438
N	208	A208del	GCT	---	3	3	C.37	0.000348
N	208	A208del	GCT	---	3	3	P.1.14	0.000143
N	208	A208del	GCT	---	3	3	P.2	0.00056
N	208	A208del	GCT	---	2	2	AY.110	0.000225
N	208	A208del	GCT	---	2	2	AY.117	0.000169
N	208	A208del	GCT	---	2	2	AY.33	0.000134
N	208	A208del	GCT	---	2	2	AY.34	0.000194
N	208	A208del	GCT	---	2	2	AY.40	0.001929
N	208	A208del	GCT	---	2	2	AY.50	0.001599
N	208	A208del	GCT	---	2	2	AY.54	0.000191
N	208	A208del	GCT	---	2	2	AY.7.2	0.001119
N	208	A208del	GCT	---	2	2	AY.9.2	0.000073
N	208	A208del	GCT	---	2	2	B.1.1.142	0.035088
N	208	A208del	GCT	---	2	2	B.1.1.291	0.001485
N	208	A208del	GCT	---	2	2	B.1.1.307	0.005063
N	208	A208del	GCT	---	2	2	B.1.1.312	0.003824
N	208	A208del	GCT	---	2	2	B.1.1.33	0.000842
N	208	A208del	GCT	---	2	2	B.1.1.416	0.00181
N	208	A208del	GCT	---	2	2	B.1.336	0.004878
N	208	A208del	GCT	---	2	2	B.1.351	0.000059
N	208	A208del	GCT	---	2	2	B.1.517	0.000854
N	208	A208del	GCT	---	2	2	B.1.525	0.000226
N	208	A208del	GCT	---	1	1	A.1	0.000282
N	208	A208del	GCT	---	1	1	A.23.1	0.000704
N	208	A208del	GCT	---	1	1	AY.113	0.000142
N	208	A208del	GCT	---	1	1	AY.116	0.000287
N	208	A208del	GCT	---	1	1	AY.121	0.000135
N	208	A208del	GCT	---	1	1	AY.14	0.000088
N	208	A208del	GCT	---	1	1	AY.16	0.00038
N	208	A208del	GCT	---	1	1	AY.16.1	0.00047
N	208	A208del	GCT	---	1	1	AY.24	0.000431
N	208	A208del	GCT	---	1	1	AY.29.1	0.000221
N	208	A208del	GCT	---	1	1	AY.32	0.000532
N	208	A208del	GCT	---	1	1	AY.37	0.000316
N	208	A208del	GCT	---	1	1	AY.38	0.000499
N	208	A208del	GCT	---	1	1	AY.39.1	0.00004
N	208	A208del	GCT	---	1	1	AY.42	0.00004
N	208	A208del	GCT	---	1	1	AY.46.2	0.000635
N	208	A208del	GCT	---	1	1	AY.5.4	0.000277
N	208	A208del	GCT	---	1	1	AY.57	0.000656
N	208	A208del	GCT	---	1	1	AY.6	0.000041
N	208	A208del	GCT	---	1	1	AY.61	0.000105
N	208	A208del	GCT	---	1	1	AY.73	0.000665
N	208	A208del	GCT	---	1	1	AY.79	0.001211
N	208	A208del	GCT	---	1	1	AY.92	0.000287
N	208	A208del	GCT	---	1	1	AY.98	0.000079
N	208	A208del	GCT	---	1	1	AY.98.1	0.000048
N	208	A208del	GCT	---	1	1	B.1.1.214	0.000055
N	208	A208del	GCT	---	1	1	B.1.1.237	0.005405
N	208	A208del	GCT	---	1	1	B.1.1.27	0.00565
N	208	A208del	GCT	---	1	1	B.1.1.301	0.001179
N	208	A208del	GCT	---	1	1	B.1.1.303	0.002762
N	208	A208del	GCT	---	1	1	B.1.1.326	0.001761
N	208	A208del	GCT	---	1	1	B.1.1.369	0.000446
N	208	A208del	GCT	---	1	1	B.1.1.409	0.002833
N	208	A208del	GCT	---	1	1	B.1.1.413	0.006897
N	208	A208del	GCT	---	1	1	B.1.1.50	0.000679
N	208	A208del	GCT	---	1	1	B.1.1.517	0.006803
N	208	A208del	GCT	---	1	1	B.1.1.525	0.005464
N	208	A208del	GCT	---	1	1	B.1.160	0.000031
N	208	A208del	GCT	---	1	1	B.1.177	0.000013
N	208	A208del	GCT	---	1	1	B.1.177.7	0.000165
N	208	A208del	GCT	---	1	1	B.1.324	0.001605
N	208	A208del	GCT	---	1	1	B.1.427	0.00005
N	208	A208del	GCT	---	1	1	B.1.465	0.003802
N	208	A208del	GCT	---	1	1	B.1.580	0.004065
N	208	A208del	GCT	---	1	1	B.1.596	0.000087
N	208	A208del	GCT	---	1	1	C.37.1	0.002618
N	208	A208del	GCT	---	1	1	C.38	0.008065
N	208	A208del	GCT	---	1	1	N.5	0.001767
N	208	A208del	GCT	---	1	1	P.1.1	0.000318
N	208	A208del	GCT	---	1	1	P.1.15	0.000232
N	208	A208del	GCT	---	1	1	P.1.7	0.000319
N	208	A208del	GCT	---	1	1	P.1.8	0.004785
N	208	A208del	GCT	---	1	1	Q.1	0.000126
N	208	A208del	GCT	---	1	1	Q.3	0.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.