CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : Mut = A182S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	182	A182S		nonsyn	Gcc	Tcc	6305	6302	0.999524	28817-28819
N	182	A182S		nonsyn	GcC	TcT	6305	3	0.000475813	28817-28819

Details of the mutation A182S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	182	A182S	Gcc	Tcc	6302	6305	All	0.001205
N	182	A182S	GcC	TcT	3	6305	All	0.000001
N	182	A182S	Gcc	Tcc	1459	1459	AY.4	0.002271
N	182	A182S	Gcc	Tcc	1069	1069	B.1.1.7	0.000957
N	182	A182S	Gcc	Tcc	522	522	B.1.258.7	0.998088
N	182	A182S	Gcc	Tcc	290	290	B.1.2	0.002554
N	182	A182S	Gcc	Tcc	210	210	B.1.427	0.010604
N	182	A182S	Gcc	Tcc	199	199	B.1.617.2	0.000749
N	182	A182S	Gcc	Tcc	164	164	AY.103	0.001018
N	182	A182S	Gcc	Tcc	157	157	AY.43	0.000696
N	182	A182S	Gcc	Tcc	147	147	AY.44	0.000895
N	182	A182S	Gcc	Tcc	147	147	B.1	0.001346
N	182	A182S	Gcc	Tcc	130	130	B.1.221	0.009234
N	182	A182S	Gcc	Tcc	80	80	P.1	0.00126
N	182	A182S	Gcc	Tcc	75	75	AY.3	0.000746
N	182	A182S	Gcc	Tcc	57	57	B.1.1	0.001034
N	182	A182S	Gcc	Tcc	52	52	B.1.160	0.001622
N	182	A182S	Gcc	Tcc	51	51	AY.98.1	0.00247
N	182	A182S	Gcc	Tcc	51	51	B.1.243	0.003549
N	182	A182S	Gcc	Tcc	49	49	AY.33	0.003272
N	182	A182S	Gcc	Tcc	44	44	AY.25	0.000265
N	182	A182S	Gcc	Tcc	44	44	AY.29	0.000694
N	182	A182S	Gcc	Tcc	43	43	AY.6	0.001769
N	182	A182S	Gcc	Tcc	42	42	D.2	0.003152
N	182	A182S	Gcc	Tcc	41	41	B.1.1.269	0.05548
N	182	A182S	Gcc	Tcc	40	40	B.1.1.214	0.002218
N	182	A182S	Gcc	Tcc	38	38	AY.102	0.001008
N	182	A182S	Gcc	Tcc	35	35	AY.39	0.000865
N	182	A182S	Gcc	Tcc	30	30	AY.4.5	0.003225
N	182	A182S	Gcc	Tcc	29	29	B.1.429	0.000682
N	182	A182S	Gcc	Tcc	28	28	AY.42	0.001126
N	182	A182S	Gcc	Tcc	28	28	AY.45	0.003407
N	182	A182S	Gcc	Tcc	27	27	AY.26	0.000764
N	182	A182S	Gcc	Tcc	24	24	B.1.1.318	0.007242
N	182	A182S	Gcc	Tcc	23	23	B.1.177	0.000303
N	182	A182S	Gcc	Tcc	20	20	B.1.1.441	1
N	182	A182S	Gcc	Tcc	20	20	B.1.1.519	0.000794
N	182	A182S	Gcc	Tcc	17	20	B.1.351	0.000505
N	182	A182S	GcC	TcT	3	20	B.1.351	0.000089
N	182	A182S	Gcc	Tcc	19	19	B.1.575	0.005765
N	182	A182S	Gcc	Tcc	18	18	AY.9.2	0.000661
N	182	A182S	Gcc	Tcc	18	18	B.1.1.50	0.01222
N	182	A182S	Gcc	Tcc	18	18	B.1.36.24	0.111111
N	182	A182S	Gcc	Tcc	17	17	AY.61	0.001781
N	182	A182S	Gcc	Tcc	17	17	B.1.177.46	0.015611
N	182	A182S	Gcc	Tcc	17	17	B.1.466.2	0.006651
N	182	A182S	Gcc	Tcc	15	15	AY.119	0.00053
N	182	A182S	Gcc	Tcc	15	15	AY.9	0.001014
N	182	A182S	Gcc	Tcc	14	14	AY.46.1	0.014374
N	182	A182S	Gcc	Tcc	14	14	B.1.177.34	0.736842
N	182	A182S	Gcc	Tcc	14	14	B.1.258	0.000932
N	182	A182S	Gcc	Tcc	13	13	B.1.311	0.003569
N	182	A182S	Gcc	Tcc	13	13	P.1.17	0.002103
N	182	A182S	Gcc	Tcc	12	12	AY.23	0.000837
N	182	A182S	Gcc	Tcc	12	12	B.1.526	0.000282
N	182	A182S	Gcc	Tcc	11	11	AY.75	0.000616
N	182	A182S	Gcc	Tcc	11	11	B.1.177.67	0.083969
N	182	A182S	Gcc	Tcc	11	11	B.1.565	0.008914
N	182	A182S	Gcc	Tcc	11	11	B.1.595.4	0.080292
N	182	A182S	Gcc	Tcc	10	10	AY.34	0.00097
N	182	A182S	Gcc	Tcc	10	10	AY.46	0.001041
N	182	A182S	Gcc	Tcc	10	10	B.1.1.274	0.050505
N	182	A182S	Gcc	Tcc	10	10	B.1.36	0.001459
N	182	A182S	Gcc	Tcc	10	10	B.1.619.1	0.006414
N	182	A182S	Gcc	Tcc	9	9	AY.100	0.000414
N	182	A182S	Gcc	Tcc	9	9	AY.20	0.00035
N	182	A182S	Gcc	Tcc	9	9	B.1.36.29	0.004656
N	182	A182S	Gcc	Tcc	8	8	AY.120	0.000297
N	182	A182S	Gcc	Tcc	8	8	B.1.1.222	0.001632
N	182	A182S	Gcc	Tcc	8	8	B.1.596	0.000697
N	182	A182S	Gcc	Tcc	8	8	P.1.14	0.000382
N	182	A182S	Gcc	Tcc	7	7	AY.36	0.001037
N	182	A182S	Gcc	Tcc	7	7	AY.41	0.002058
N	182	A182S	Gcc	Tcc	7	7	AY.47	0.000218
N	182	A182S	Gcc	Tcc	7	7	AY.75.1	0.001262
N	182	A182S	Gcc	Tcc	7	7	AY.9.1	0.000586
N	182	A182S	Gcc	Tcc	7	7	B.1.1.427	1
N	182	A182S	Gcc	Tcc	7	7	B.1.617.1	0.000903
N	182	A182S	Gcc	Tcc	6	6	AY.118	0.000376
N	182	A182S	Gcc	Tcc	6	6	AY.4.2.1	0.000894
N	182	A182S	Gcc	Tcc	6	6	B.1.214.3	0.042857
N	182	A182S	Gcc	Tcc	6	6	B.1.369	0.001711
N	182	A182S	Gcc	Tcc	6	6	B.1.471	0.016393
N	182	A182S	Gcc	Tcc	5	5	AY.114	0.001156
N	182	A182S	Gcc	Tcc	5	5	AY.117	0.000423
N	182	A182S	Gcc	Tcc	5	5	AY.120.1	0.001605
N	182	A182S	Gcc	Tcc	5	5	AY.4.2	0.000108
N	182	A182S	Gcc	Tcc	5	5	AY.84	0.002187
N	182	A182S	Gcc	Tcc	5	5	AY.88	0.004421
N	182	A182S	Gcc	Tcc	5	5	B.1.1.326	0.008803
N	182	A182S	Gcc	Tcc	5	5	P.2	0.000933
N	182	A182S	Gcc	Tcc	4	4	A.2.5	0.001996
N	182	A182S	Gcc	Tcc	4	4	AD.2	0.000876
N	182	A182S	Gcc	Tcc	4	4	AY.10	0.00212
N	182	A182S	Gcc	Tcc	4	4	AY.13	0.000644
N	182	A182S	Gcc	Tcc	4	4	AY.2	0.001425
N	182	A182S	Gcc	Tcc	4	4	AY.29.1	0.000882
N	182	A182S	Gcc	Tcc	4	4	AY.39.1	0.000158
N	182	A182S	Gcc	Tcc	4	4	AY.46.6	0.000289
N	182	A182S	Gcc	Tcc	4	4	AY.5	0.000083
N	182	A182S	Gcc	Tcc	4	4	AY.8	0.002424
N	182	A182S	Gcc	Tcc	4	4	AY.99.2	0.000369
N	182	A182S	Gcc	Tcc	4	4	B	0.000511
N	182	A182S	Gcc	Tcc	4	4	B.1.1.291	0.00297
N	182	A182S	Gcc	Tcc	4	4	B.1.234	0.000528
N	182	A182S	Gcc	Tcc	4	4	B.1.398	0.011905
N	182	A182S	Gcc	Tcc	4	4	B.1.400	0.001716
N	182	A182S	Gcc	Tcc	4	4	B.1.438.4	0.085106
N	182	A182S	Gcc	Tcc	4	4	B.1.626	0.022857
N	182	A182S	Gcc	Tcc	4	4	N.9	0.02381
N	182	A182S	Gcc	Tcc	3	3	AY.111	0.000549
N	182	A182S	Gcc	Tcc	3	3	AY.113	0.000427
N	182	A182S	Gcc	Tcc	3	3	AY.116	0.00086
N	182	A182S	Gcc	Tcc	3	3	AY.121	0.000406
N	182	A182S	Gcc	Tcc	3	3	AY.14	0.000264
N	182	A182S	Gcc	Tcc	3	3	AY.54	0.000286
N	182	A182S	Gcc	Tcc	3	3	AY.7.1	0.000338
N	182	A182S	Gcc	Tcc	3	3	B.1.1.216	0.002671
N	182	A182S	Gcc	Tcc	3	3	B.1.1.277	0.002276
N	182	A182S	Gcc	Tcc	3	3	B.1.177.21	0.000229
N	182	A182S	Gcc	Tcc	3	3	B.1.36.18	0.001261
N	182	A182S	Gcc	Tcc	3	3	B.1.36.38	0.004926
N	182	A182S	Gcc	Tcc	3	3	B.1.36.8	0.003
N	182	A182S	Gcc	Tcc	3	3	B.1.567	0.01
N	182	A182S	Gcc	Tcc	3	3	B.1.609	0.001438
N	182	A182S	Gcc	Tcc	3	3	B.1.620	0.002838
N	182	A182S	Gcc	Tcc	3	3	C.16	0.003181
N	182	A182S	Gcc	Tcc	3	3	C.32	0.069767
N	182	A182S	Gcc	Tcc	3	3	C.37	0.000348
N	182	A182S	Gcc	Tcc	2	2	AY.1	0.000791
N	182	A182S	Gcc	Tcc	2	2	AY.105	0.001286
N	182	A182S	Gcc	Tcc	2	2	AY.106	0.00067
N	182	A182S	Gcc	Tcc	2	2	AY.16	0.000759
N	182	A182S	Gcc	Tcc	2	2	AY.22	0.004184
N	182	A182S	Gcc	Tcc	2	2	AY.32	0.001065
N	182	A182S	Gcc	Tcc	2	2	AY.38	0.000999
N	182	A182S	Gcc	Tcc	2	2	AY.5.4	0.000553
N	182	A182S	Gcc	Tcc	2	2	AY.53	0.000575
N	182	A182S	Gcc	Tcc	2	2	AY.71	0.00095
N	182	A182S	Gcc	Tcc	2	2	AY.92	0.000575
N	182	A182S	Gcc	Tcc	2	2	AY.98	0.000158
N	182	A182S	Gcc	Tcc	2	2	B.1.1.1	0.000653
N	182	A182S	Gcc	Tcc	2	2	B.1.1.148	0.017544
N	182	A182S	Gcc	Tcc	2	2	B.1.1.174	0.006757
N	182	A182S	Gcc	Tcc	2	2	B.1.1.192	0.004619
N	182	A182S	Gcc	Tcc	2	2	B.1.1.200	0.014925
N	182	A182S	Gcc	Tcc	2	2	B.1.1.28	0.000622
N	182	A182S	Gcc	Tcc	2	2	B.1.1.306	0.000877
N	182	A182S	Gcc	Tcc	2	2	B.1.1.351	0.005587
N	182	A182S	Gcc	Tcc	2	2	B.1.1.377	0.002762
N	182	A182S	Gcc	Tcc	2	2	B.1.1.413	0.013793
N	182	A182S	Gcc	Tcc	2	2	B.1.1.434	0.000697
N	182	A182S	Gcc	Tcc	2	2	B.1.1.461	0.024096
N	182	A182S	Gcc	Tcc	2	2	B.1.1.528	0.009615
N	182	A182S	Gcc	Tcc	2	2	B.1.126	0.002551
N	182	A182S	Gcc	Tcc	2	2	B.1.157	0.00597
N	182	A182S	Gcc	Tcc	2	2	B.1.177.15	0.001262
N	182	A182S	Gcc	Tcc	2	2	B.1.177.4	0.000422
N	182	A182S	Gcc	Tcc	2	2	B.1.177.7	0.00033
N	182	A182S	Gcc	Tcc	2	2	B.1.177.81	0.000379
N	182	A182S	Gcc	Tcc	2	2	B.1.232	0.001075
N	182	A182S	Gcc	Tcc	2	2	B.1.305	0.004301
N	182	A182S	Gcc	Tcc	2	2	B.1.346	0.002621
N	182	A182S	Gcc	Tcc	2	2	B.1.351.2	0.000605
N	182	A182S	Gcc	Tcc	2	2	B.1.396	0.001411
N	182	A182S	Gcc	Tcc	2	2	B.1.416	0.002538
N	182	A182S	Gcc	Tcc	2	2	B.1.470	0.002809
N	182	A182S	Gcc	Tcc	2	2	B.1.595	0.000522
N	182	A182S	Gcc	Tcc	2	2	B.1.612	0.005305
N	182	A182S	Gcc	Tcc	2	2	B.1.621	0.000177
N	182	A182S	Gcc	Tcc	2	2	B.1.623	0.001073
N	182	A182S	Gcc	Tcc	2	2	B.1.637	0.000146
N	182	A182S	Gcc	Tcc	2	2	C.36	0.001821
N	182	A182S	Gcc	Tcc	2	2	C.39	0.037736
N	182	A182S	Gcc	Tcc	2	2	P.3	0.00319
N	182	A182S	Gcc	Tcc	2	2	Q.8	0.00033
N	182	A182S	Gcc	Tcc	1	1	A.2.3	0.004739
N	182	A182S	Gcc	Tcc	1	1	AY.107	0.000466
N	182	A182S	Gcc	Tcc	1	1	AY.16.1	0.00047
N	182	A182S	Gcc	Tcc	1	1	AY.17	0.008197
N	182	A182S	Gcc	Tcc	1	1	AY.23.1	0.000417
N	182	A182S	Gcc	Tcc	1	1	AY.27	0.000065
N	182	A182S	Gcc	Tcc	1	1	AY.34.1	0.00051
N	182	A182S	Gcc	Tcc	1	1	AY.46.4	0.000165
N	182	A182S	Gcc	Tcc	1	1	AY.50	0.000799
N	182	A182S	Gcc	Tcc	1	1	AY.51	0.000909
N	182	A182S	Gcc	Tcc	1	1	AY.55	0.000917
N	182	A182S	Gcc	Tcc	1	1	AY.58	0.000907
N	182	A182S	Gcc	Tcc	1	1	AY.60	0.000938
N	182	A182S	Gcc	Tcc	1	1	AY.68	0.000274
N	182	A182S	Gcc	Tcc	1	1	AY.69	0.000187
N	182	A182S	Gcc	Tcc	1	1	AY.73	0.000665
N	182	A182S	Gcc	Tcc	1	1	AY.85	0.000427
N	182	A182S	Gcc	Tcc	1	1	AY.87	0.000833
N	182	A182S	Gcc	Tcc	1	1	AY.99	0.001049
N	182	A182S	Gcc	Tcc	1	1	B.1.1.130	0.015385
N	182	A182S	Gcc	Tcc	1	1	B.1.1.189	0.001513
N	182	A182S	Gcc	Tcc	1	1	B.1.1.217	0.003636
N	182	A182S	Gcc	Tcc	1	1	B.1.1.25	0.000569
N	182	A182S	Gcc	Tcc	1	1	B.1.1.284	0.000107
N	182	A182S	Gcc	Tcc	1	1	B.1.1.285	0.006536
N	182	A182S	Gcc	Tcc	1	1	B.1.1.312	0.001912
N	182	A182S	Gcc	Tcc	1	1	B.1.1.316	0.000925
N	182	A182S	Gcc	Tcc	1	1	B.1.1.348	0.000796
N	182	A182S	Gcc	Tcc	1	1	B.1.1.418	0.022727
N	182	A182S	Gcc	Tcc	1	1	B.1.1.420	0.001006
N	182	A182S	Gcc	Tcc	1	1	B.1.1.436	0.025641
N	182	A182S	Gcc	Tcc	1	1	B.1.1.52	0.012195
N	182	A182S	Gcc	Tcc	1	1	B.1.1.61	0.008772
N	182	A182S	Gcc	Tcc	1	1	B.1.111	0.001175
N	182	A182S	Gcc	Tcc	1	1	B.1.128	0.000635
N	182	A182S	Gcc	Tcc	1	1	B.1.139	0.000733
N	182	A182S	Gcc	Tcc	1	1	B.1.160.11	0.005714
N	182	A182S	Gcc	Tcc	1	1	B.1.177.11	0.001698
N	182	A182S	Gcc	Tcc	1	1	B.1.177.83	0.001481
N	182	A182S	Gcc	Tcc	1	1	B.1.177.86	0.000183
N	182	A182S	Gcc	Tcc	1	1	B.1.179	0.003759
N	182	A182S	Gcc	Tcc	1	1	B.1.199	0.004132
N	182	A182S	Gcc	Tcc	1	1	B.1.214	0.003663
N	182	A182S	Gcc	Tcc	1	1	B.1.239	0.001221
N	182	A182S	Gcc	Tcc	1	1	B.1.289	0.00266
N	182	A182S	Gcc	Tcc	1	1	B.1.356	0.001727
N	182	A182S	Gcc	Tcc	1	1	B.1.36.1	0.00114
N	182	A182S	Gcc	Tcc	1	1	B.1.36.16	0.001425
N	182	A182S	Gcc	Tcc	1	1	B.1.367	0.000792
N	182	A182S	Gcc	Tcc	1	1	B.1.378	0.006849
N	182	A182S	Gcc	Tcc	1	1	B.1.425	0.002994
N	182	A182S	Gcc	Tcc	1	1	B.1.451	0.008197
N	182	A182S	Gcc	Tcc	1	1	B.1.524	0.001406
N	182	A182S	Gcc	Tcc	1	1	B.1.525	0.000113
N	182	A182S	Gcc	Tcc	1	1	B.1.560	0.00463
N	182	A182S	Gcc	Tcc	1	1	B.1.561	0.000397
N	182	A182S	Gcc	Tcc	1	1	B.1.564	0.000426
N	182	A182S	Gcc	Tcc	1	1	B.1.575.2	0.004808
N	182	A182S	Gcc	Tcc	1	1	B.1.599	0.00365
N	182	A182S	Gcc	Tcc	1	1	B.1.628	0.000352
N	182	A182S	Gcc	Tcc	1	1	B.1.631	0.003367
N	182	A182S	Gcc	Tcc	1	1	B.3	0.000831
N	182	A182S	Gcc	Tcc	1	1	B.40	0.000364
N	182	A182S	Gcc	Tcc	1	1	C.18	0.002591
N	182	A182S	Gcc	Tcc	1	1	C.23	0.005814
N	182	A182S	Gcc	Tcc	1	1	C.35	0.000774
N	182	A182S	Gcc	Tcc	1	1	C.36.3	0.000567
N	182	A182S	Gcc	Tcc	1	1	G.1	0.041667
N	182	A182S	Gcc	Tcc	1	1	N.5	0.001767
N	182	A182S	Gcc	Tcc	1	1	P.1.12	0.000484
N	182	A182S	Gcc	Tcc	1	1	P.1.16	0.000374
N	182	A182S	Gcc	Tcc	1	1	P.1.2	0.001156
N	182	A182S	Gcc	Tcc	1	1	P.6	0.003145
N	182	A182S	Gcc	Tcc	1	1	P.7	0.004367
N	182	A182S	Gcc	Tcc	1	1	Q.1	0.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.