CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : Mut = A173A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N173A173AsyngcAgcT381033430.87742828790-28792
N173A173AsyngcAgcG38104270.11207328790-28792
N173A173AsyngcAgcC3810400.010498728790-28792

Details of the mutation A173A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N173A173AgcAgcT33433810All0.000639
N173A173AgcAgcG4273810All0.000082
N173A173AgcAgcC403810All0.000008
N173A173AgcAgcT934936B.1.4290.021976
N173A173AgcAgcG2936B.1.4290.000047
N173A173AgcAgcT354451B.1.1.70.000317
N173A173AgcAgcG97451B.1.1.70.000087
N173A173AgcAgcT313317AY.1030.001943
N173A173AgcAgcG4317AY.1030.000025
N173A173AgcAgcT171250AY.40.000266
N173A173AgcAgcG50250AY.40.000078
N173A173AgcAgcC29250AY.40.000045
N173A173AgcAgcT167168B.10.00153
N173A173AgcAgcG1168B.10.000009
N173A173AgcAgcT149156B.1.20.001312
N173A173AgcAgcG7156B.1.20.000062
N173A173AgcAgcT147149P.10.002316
N173A173AgcAgcG2149P.10.000032
N173A173AgcAgcT137137B.1.9.40.840491
N173A173AgcAgcT87104B.1.617.20.000328
N173A173AgcAgcG17104B.1.617.20.000064
N173A173AgcAgcT7682B.1.1770.001001
N173A173AgcAgcG682B.1.1770.000079
N173A173AgcAgcT6567AY.390.001606
N173A173AgcAgcG267AY.390.000049
N173A173AgcAgcG5162AY.1190.001801
N173A173AgcAgcT1162AY.1190.000388
N173A173AgcAgcT5360B.1.10.000961
N173A173AgcAgcG760B.1.10.000127
N173A173AgcAgcT4050AY.440.000243
N173A173AgcAgcG1050AY.440.000061
N173A173AgcAgcT4848AY.30.000477
N173A173AgcAgcT3741AY.430.000164
N173A173AgcAgcG441AY.430.000018
N173A173AgcAgcG4040B.1.177.320.053981
N173A173AgcAgcT3030AY.470.000933
N173A173AgcAgcT2626B.1.1.3280.440678
N173A173AgcAgcG2223B.1.2580.001464
N173A173AgcAgcT123B.1.2580.000067
N173A173AgcAgcT2323B.1.258.170.002391
N173A173AgcAgcT2323B.1.4270.001161
N173A173AgcAgcT2222AY.1000.001012
N173A173AgcAgcT2222B.1.1.3170.009057
N173A173AgcAgcT2020AY.9.20.000735
N173A173AgcAgcT1416AY.1020.000371
N173A173AgcAgcG216AY.1020.000053
N173A173AgcAgcG1616B.1.5540.070485
N173A173AgcAgcG915B0.00115
N173A173AgcAgcT615B0.000767
N173A173AgcAgcG914B.1.6370.000658
N173A173AgcAgcT514B.1.6370.000365
N173A173AgcAgcT1313AY.1100.001465
N173A173AgcAgcT913AY.250.000054
N173A173AgcAgcG413AY.250.000024
N173A173AgcAgcT1313AY.98.10.00063
N173A173AgcAgcT1212AY.230.000837
N173A173AgcAgcT1212AY.50.000248
N173A173AgcAgcG812B.1.5960.000697
N173A173AgcAgcT412B.1.5960.000349
N173A173AgcAgcT1111P.1.120.005324
N173A173AgcAgcT1010AY.300.003957
N173A173AgcAgcT710B.1.3510.000208
N173A173AgcAgcG210B.1.3510.000059
N173A173AgcAgcC110B.1.3510.00003
N173A173AgcAgcG910B.1.617.10.001161
N173A173AgcAgcT110B.1.617.10.000129
N173A173AgcAgcT99B.1.5250.001018
N173A173AgcAgcT88B.1.1.3180.002414
N173A173AgcAgcT88B.1.6210.000708
N173A173AgcAgcT58D.20.000375
N173A173AgcAgcG38D.20.000225
N173A173AgcAgcT77AY.200.000272
N173A173AgcAgcT57AY.290.000079
N173A173AgcAgcG27AY.290.000032
N173A173AgcAgcT77AY.39.10.000277
N173A173AgcAgcT77AY.420.000282
N173A173AgcAgcT77B.1.1110.008226
N173A173AgcAgcT66AY.4.20.00013
N173A173AgcAgcT66AY.690.00112
N173A173AgcAgcG46AY.90.00027
N173A173AgcAgcT26AY.90.000135
N173A173AgcAgcG46B.1.177.730.002265
N173A173AgcAgcT26B.1.177.730.001133
N173A173AgcAgcT66P.1.140.000287
N173A173AgcAgcT66P.1.150.001394
N173A173AgcAgcC55AY.940.002213
N173A173AgcAgcT55B.1.1.3350.064935
N173A173AgcAgcT35B.1.360.000438
N173A173AgcAgcG25B.1.360.000292
N173A173AgcAgcT55B.1.36.270.003817
N173A173AgcAgcT45B.1.5260.000094
N173A173AgcAgcG15B.1.5260.000024
N173A173AgcAgcT55B.1.90.030864
N173A173AgcAgcT44AY.1180.000251
N173A173AgcAgcT34AY.330.0002
N173A173AgcAgcG14AY.330.000067
N173A173AgcAgcT34AY.490.009585
N173A173AgcAgcG14AY.490.003195
N173A173AgcAgcT44AY.700.000834
N173A173AgcAgcT44B.1.3690.001141
N173A173AgcAgcT44B.1.4250.011976
N173A173AgcAgcT44B.1.9.50.022727
N173A173AgcAgcT33AY.1130.000427
N173A173AgcAgcT33AY.7.10.000338
N173A173AgcAgcT33AY.750.000168
N173A173AgcAgcT33AY.99.20.000276
N173A173AgcAgcT33B.1.1.10.00098
N173A173AgcAgcT33B.1.1.1010.03
N173A173AgcAgcT33B.1.1.500.002037
N173A173AgcAgcT33B.1.1600.000094
N173A173AgcAgcG33B.1.177.580.003995
N173A173AgcAgcT33B.1.4260.003027
N173A173AgcAgcT22A0.000774
N173A173AgcAgcT22AY.1210.000271
N173A173AgcAgcT22AY.20.000712
N173A173AgcAgcG12AY.4.2.10.000149
N173A173AgcAgcC12AY.4.2.10.000149
N173A173AgcAgcT22AY.60.000082
N173A173AgcAgcT22AY.610.00021
N173A173AgcAgcT12AY.9.10.000084
N173A173AgcAgcG12AY.9.10.000084
N173A173AgcAgcG12AY.920.000287
N173A173AgcAgcT12AY.920.000287
N173A173AgcAgcG22B.1.1.1410.004024
N173A173AgcAgcT22B.1.1.3730.047619
N173A173AgcAgcT22B.1.1.5190.000079
N173A173AgcAgcT22B.1.1460.008475
N173A173AgcAgcT22B.1.177.150.001262
N173A173AgcAgcT22B.1.177.40.000422
N173A173AgcAgcG12B.1.177.600.000218
N173A173AgcAgcT12B.1.177.600.000218
N173A173AgcAgcT22B.1.177.750.002081
N173A173AgcAgcG12B.1.2210.000071
N173A173AgcAgcT12B.1.2210.000071
N173A173AgcAgcG12B.1.2340.000132
N173A173AgcAgcT12B.1.2340.000132
N173A173AgcAgcT22B.1.3240.00321
N173A173AgcAgcT22B.1.36.260.005714
N173A173AgcAgcT22B.1.3890.002004
N173A173AgcAgcG22B.1.466.20.000782
N173A173AgcAgcC22B.1.4970.00063
N173A173AgcAgcT12B.1.5950.000261
N173A173AgcAgcG12B.1.5950.000261
N173A173AgcAgcT22C.360.001821
N173A173AgcAgcT22P.1.170.000324
N173A173AgcAgcT22P.20.000373
N173A173AgcAgcT22Q.80.00033
N173A173AgcAgcT11A.2.40.003367
N173A173AgcAgcT11AE.80.000489
N173A173AgcAgcT11AP.10.001502
N173A173AgcAgcT11AU.30.00211
N173A173AgcAgcT11AY.1080.001103
N173A173AgcAgcT11AY.1140.000231
N173A173AgcAgcT11AY.1160.000287
N173A173AgcAgcT11AY.116.10.000311
N173A173AgcAgcT11AY.1170.000085
N173A173AgcAgcT11AY.1200.000037
N173A173AgcAgcT11AY.160.00038
N173A173AgcAgcT11AY.16.10.00047
N173A173AgcAgcT11AY.3.10.000085
N173A173AgcAgcT11AY.340.000097
N173A173AgcAgcT11AY.34.10.00051
N173A173AgcAgcT11AY.370.000316
N173A173AgcAgcG11AY.380.000499
N173A173AgcAgcT11AY.4.50.000107
N173A173AgcAgcT11AY.450.000122
N173A173AgcAgcT11AY.46.20.000635
N173A173AgcAgcT11AY.46.60.000072
N173A173AgcAgcG11AY.5.20.002463
N173A173AgcAgcG11AY.550.000917
N173A173AgcAgcG11AY.740.000116
N173A173AgcAgcT11AY.75.10.00018
N173A173AgcAgcG11AY.790.001211
N173A173AgcAgcT11AY.840.000437
N173A173AgcAgcT11AY.870.000833
N173A173AgcAgcT11AY.930.000273
N173A173AgcAgcT11AY.980.000079
N173A173AgcAgcT11B.1.1.1350.004695
N173A173AgcAgcT11B.1.1.1760.000439
N173A173AgcAgcT11B.1.1.1920.002309
N173A173AgcAgcT11B.1.1.2140.000055
N173A173AgcAgcT11B.1.1.2160.00089
N173A173AgcAgcT11B.1.1.2620.015152
N173A173AgcAgcT11B.1.1.2770.000759
N173A173AgcAgcT11B.1.1.280.000311
N173A173AgcAgcT11B.1.1.3630.005988
N173A173AgcAgcT11B.1.1.3890.006061
N173A173AgcAgcG11B.1.1.4090.002833
N173A173AgcAgcT11B.1.1.4220.045455
N173A173AgcAgcG11B.1.1.4480.002033
N173A173AgcAgcT11B.1.1.630.000386
N173A173AgcAgcT11B.1.177.120.000152
N173A173AgcAgcT11B.1.177.160.000664
N173A173AgcAgcC11B.1.177.560.000668
N173A173AgcAgcC11B.1.177.630.002703
N173A173AgcAgcT11B.1.177.650.000665
N173A173AgcAgcT11B.1.177.860.000183
N173A173AgcAgcG11B.1.1890.004292
N173A173AgcAgcT11B.1.1920.009259
N173A173AgcAgcT11B.1.220.001318
N173A173AgcAgcT11B.1.221.10.002907
N173A173AgcAgcT11B.1.221.40.004167
N173A173AgcAgcT11B.1.2330.014085
N173A173AgcAgcT11B.1.2400.000216
N173A173AgcAgcT11B.1.2430.00007
N173A173AgcAgcT11B.1.3110.000275
N173A173AgcAgcT11B.1.36.170.000494
N173A173AgcAgcT11B.1.3670.000792
N173A173AgcAgcT11B.1.4000.000429
N173A173AgcAgcT11B.1.4090.000781
N173A173AgcAgcG11B.1.4320.011236
N173A173AgcAgcG11B.1.4560.003268
N173A173AgcAgcT11B.1.5010.007353
N173A173AgcAgcG11B.1.5330.009615
N173A173AgcAgcT11B.1.5600.00463
N173A173AgcAgcT11B.1.5640.000426
N173A173AgcAgcG11B.1.6280.000352
N173A173AgcAgcT11C.10.002392
N173A173AgcAgcT11C.140.004329
N173A173AgcAgcT11C.230.005814
N173A173AgcAgcG11C.260.007353
N173A173AgcAgcT11C.370.000116
N173A173AgcAgcT11C.380.008065
N173A173AgcAgcG11P.1.160.000374
N173A173AgcAgcT11P.1.70.000319

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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