CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 9

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N9Q9LnonsyncAgcTg1563111561990.99928328298-28300
N9Q9LnonsyncAGcTT156311700.00044782528298-28300
N9Q9LnonsynCAgTTg156311340.00021751528298-28300
N9Q9LnonsyncAGcTC15631170.000044782528298-28300
N9Q9LnonsyncAGcTA15631110.000006397528298-28300
N9Q9HnonsyncaGcaT13573123690.91129428298-28300
N9Q9HnonsyncaGcaC1357312040.088705528298-28300
N9Q9QsyncaGcaA714714128298-28300
N9Q9RnonsyncAgcGg1421400.98591528298-28300
N9Q9RnonsyncAGcGA14210.0070422528298-28300
N9Q9RnonsynCAGAGA14210.0070422528298-28300
N9Q9KnonsynCagAag1041030.99038528298-28300
N9Q9KnonsynCaGAaA10410.0096153828298-28300
N9Q9EnonsynCagGag4545128298-28300
N9Q9deldelCAG---3434128298-28300
N9Q9PnonsyncAgcCg28270.96428628298-28300
N9Q9PnonsyncAGcCA2810.035714328298-28300
N9Q9XnonsynCagTag18170.94444428298-28300
N9Q9XnonsynCaGTaA1810.055555628298-28300
N9Q9YnonsynCaGTaT760.85714328298-28300
N9Q9YnonsynCaGTaC710.14285728298-28300
N9Q9VnonsynCAgGTg44128298-28300
N9Q9NnonsynCaGAaC320.66666728298-28300
N9Q9del1delcaGca-310.33333328298-28300
N9Q9del1delcAGc-C310.33333328298-28300
N9Q9del1delCAg-Cg310.33333328298-28300
N9Q9NnonsynCaGAaT310.33333328298-28300
N9Q9MnonsynCAgATg22128298-28300
N9Q9CnonsynCAGTGT11128298-28300

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N9Q9LcAgcTg156199156311All0.029875
N9Q9LcAGcTT70156311All0.000013
N9Q9LCAgTTg34156311All0.000007
N9Q9LcAGcTC7156311All0.000001
N9Q9LcAGcTA1156311All0
N9Q9LcAgcTg155581155693AY.430.689296
N9Q9LcAGcTT70155693AY.430.00031
N9Q9LCAgTTg34155693AY.430.000151
N9Q9LcAGcTC7155693AY.430.000031
N9Q9LcAGcTA1155693AY.430.000004
N9Q9HcaGcaT1236913573All0.002366
N9Q9HcaGcaC120413573All0.00023
N9Q9HcaGcaT31233123B.1.3110.857496
N9Q9HcaGcaT12441255AY.40.001936
N9Q9HcaGcaC111255AY.40.000017
N9Q9HcaGcaT10271128AY.30.010215
N9Q9HcaGcaC1011128AY.30.001005
N9Q9HcaGcaT982983AY.260.027801
N9Q9HcaGcaC1983AY.260.000028
N9Q9QcaGcaA714714All0.000137
N9Q9HcaGcaC664664AP.10.996997
N9Q9HcaGcaT611612B.1.1.370.11784
N9Q9HcaGcaC1612B.1.1.370.000193
N9Q9HcaGcaT527527B.1.3510.015666
N9Q9HcaGcaT394419B.1.1.70.000353
N9Q9HcaGcaC25419B.1.1.70.000022
N9Q9HcaGcaT263294B.1.617.20.00099
N9Q9HcaGcaC31294B.1.617.20.000117
N9Q9HcaGcaT141282AY.440.000858
N9Q9HcaGcaC141282AY.440.000858
N9Q9HcaGcaT228250B.10.002088
N9Q9HcaGcaC22250B.10.000202
N9Q9HcaGcaT236236B.1.221.40.983333
N9Q9HcaGcaT233233B.1.1.2220.047532
N9Q9HcaGcaT216216B.1.3770.986301
N9Q9QcaGcaA206206B.1.1.70.000184
N9Q9QcaGcaA195195AY.50.004027
N9Q9HcaGcaT174190AY.1030.00108
N9Q9HcaGcaC16190AY.1030.000099
N9Q9HcaGcaT173177AY.250.001041
N9Q9HcaGcaC4177AY.250.000024
N9Q9HcaGcaT158158AY.4.50.016984
N9Q9HcaGcaT138156B.1.1770.001817
N9Q9HcaGcaC18156B.1.1770.000237
N9Q9LcAgcTg151151B.1.617.20.000569
N9Q9RcAgcGg140142All0.000027
N9Q9RCAGAGA1142All0
N9Q9RcAGcGA1142All0
N9Q9HcaGcaT128138B.1.10.002322
N9Q9HcaGcaC10138B.1.10.000181
N9Q9HcaGcaT122128B.1.20.001074
N9Q9HcaGcaC6128B.1.20.000053
N9Q9HcaGcaT116116B.1.5610.04605
N9Q9KCagAag103104All0.00002
N9Q9KCaGAaA1104All0
N9Q9HcaGcaT103103AY.390.002545
N9Q9LcAgcTg9292AY.420.003701
N9Q9HcaGcaC7386B.1.1.700.024898
N9Q9HcaGcaT1386B.1.1.700.004434
N9Q9HcaGcaT8484B.1.1.5190.003336
N9Q9LcAgcTg8080B.1.1.70.000072
N9Q9HcaGcaT7070AY.1020.001856
N9Q9HcaGcaT5860B.1.2340.007653
N9Q9HcaGcaC260B.1.2340.000264
N9Q9LcAgcTg5858AY.440.000353
N9Q9HcaGcaT5757B.1.2430.003966
N9Q9HcaGcaT5454B.1.1600.001684
N9Q9HcaGcaT5252AY.1200.001933
N9Q9HcaGcaT5151AY.430.000226
N9Q9HcaGcaT4950AY.50.001012
N9Q9HcaGcaC150AY.50.000021
N9Q9HcaGcaT5050B.1.5910.531915
N9Q9ECagGag4545All0.000009
N9Q9HcaGcaT4144AY.470.001275
N9Q9HcaGcaC344AY.470.000093
N9Q9HcaGcaT4444B.1.4290.001035
N9Q9HcaGcaT4444B.1.466.20.017214
N9Q9HcaGcaT4144P.10.000646
N9Q9HcaGcaC344P.10.000047
N9Q9RcAgcGg4040B.1.4270.00202
N9Q9HcaGcaT3737AY.330.002471
N9Q9QcaGcaA3737B.1.1.2140.002052
N9Q9HcaGcaT3636B.1.6370.002631
N9Q9HcaGcaT3535P.20.006532
N9Q9delCAG---3434All0.000007
N9Q9HcaGcaT3232P.1.140.00153
N9Q9LcAgcTg3131AY.1080.034179
N9Q9QcaGcaA3030AY.1180.001879
N9Q9PcAgcCg2728All0.000005
N9Q9PcAGcCA128All0
N9Q9QcaGcaA2828B.1.10.000508
N9Q9HcaGcaT2727AY.200.001049
N9Q9HcaGcaT2727AY.98.10.001308
N9Q9HcaGcaT2425B.1.177.860.004403
N9Q9HcaGcaC125B.1.177.860.000183
N9Q9HcaGcaT2525R.10.00225
N9Q9HcaGcaT2324B.1.3960.016231
N9Q9HcaGcaC124B.1.3960.000706
N9Q9HcaGcaT2323B.1.360.003356
N9Q9HcaGcaT2222B.1.177.750.022893
N9Q9KCagAag2222B.1.20.000194
N9Q9KCagAag2222B.1.2100.046908
N9Q9HcaGcaT2121AY.4.20.000455
N9Q9HcaGcaC1521AY.690.0028
N9Q9HcaGcaT621AY.690.00112
N9Q9HcaGcaT1821B.1.5260.000423
N9Q9HcaGcaC321B.1.5260.000071
N9Q9QcaGcaA2020AY.40.000031
N9Q9HcaGcaT1920B.1.5960.001656
N9Q9HcaGcaC120B.1.5960.000087
N9Q9LcAgcTg1919AY.1030.000118
N9Q9HcaGcaT1919B.1.1.1700.023691
N9Q9HcaGcaT1919B.1.177.820.009069
N9Q9XCagTag1718All0.000003
N9Q9XCaGTaA118All0
N9Q9LcAgcTg1818AY.1200.000669
N9Q9HcaGcaT1718AY.610.001781
N9Q9HcaGcaC118AY.610.000105
N9Q9QcaGcaA1818B.1.617.20.000068
N9Q9HcaGcaT1517AY.1000.00069
N9Q9HcaGcaC217AY.1000.000092
N9Q9HcaGcaT1617AY.290.000252
N9Q9HcaGcaC117AY.290.000016
N9Q9RcAgcGg1717AY.40.000026
N9Q9HcaGcaT1517AY.450.001825
N9Q9HcaGcaC217AY.450.000243
N9Q9HcaGcaT1717AY.730.011311
N9Q9HcaGcaT1717AY.9.10.001423
N9Q9HcaGcaT1717B.1.1.330.007155
N9Q9LcAgcTg1616AY.40.000025
N9Q9HcaGcaT1516B.1.1.2140.000832
N9Q9HcaGcaC116B.1.1.2140.000055
N9Q9ECagGag1616B.1.1.70.000014
N9Q9HcaGcaT1515AY.230.001046
N9Q9HcaGcaT1515B.1.177.160.009967
N9Q9HcaGcaT1414AY.1130.001993
N9Q9LcAgcTg1414AY.390.000346
N9Q9HcaGcaT1414AY.460.001457
N9Q9HcaGcaT1414AY.750.000784
N9Q9HcaGcaT1414B.1.1.280.004357
N9Q9HcaGcaT1414B.1.177.40.002955
N9Q9HcaGcaT1414B.1.5650.011345
N9Q9HcaGcaT1313AY.420.000523
N9Q9HcaGcaT1313AY.70.002548
N9Q9HcaGcaT1313B.1.1.500.008826
N9Q9HcaGcaT1113B.1.36.290.005691
N9Q9HcaGcaC213B.1.36.290.001035
N9Q9HcaGcaT1212AY.3.10.001023
N9Q9HcaGcaT1212AY.890.058824
N9Q9QcaGcaA1212P.10.000189
N9Q9LcAgcTg1111AY.340.001067
N9Q9HcaGcaT911AY.540.000858
N9Q9HcaGcaC211AY.540.000191
N9Q9HcaGcaT1111AY.9.20.000404
N9Q9LcAgcTg1111AY.9.20.000404
N9Q9HcaGcaT1111B.1.1.250.006254
N9Q9PcAgcCg1111B.1.1.70.00001
N9Q9QcaGcaA1010AY.1190.000353
N9Q9PcAgcCg1010AY.40.000016
N9Q9HcaGcaT1010B.1.1880.166667
N9Q9HcaGcaT1010B.1.3910.011274
N9Q9QcaGcaA99A.2.50.004491
N9Q9HcaGcaT69AY.1210.000812
N9Q9HcaGcaC39AY.1210.000406
N9Q9HcaGcaT89AY.39.10.000317
N9Q9HcaGcaC19AY.39.10.00004
N9Q9HcaGcaT99AY.46.60.00065
N9Q9HcaGcaT99AY.620.003922
N9Q9HcaGcaT99AY.99.20.000829
N9Q9delCAG---99AY.99.20.000829
N9Q9LcAgcTg99B.10.000082
N9Q9HcaGcaT99B.1.1.3170.003705
N9Q9HcaGcaT99B.1.177.730.005096
N9Q9HcaGcaT89B.1.2580.000532
N9Q9HcaGcaC19B.1.2580.000067
N9Q9HcaGcaT99B.1.4270.000454
N9Q9ECagGag99B.1.617.20.000034
N9Q9HcaGcaT99B.4.70.090909
N9Q9HcaGcaT99C.300.015544
N9Q9LcAgcTg88AY.120.2.10.003986
N9Q9HcaGcaT88AY.60.000329
N9Q9LcAgcTg88AY.98.10.000387
N9Q9QcaGcaA88AZ.20.006568
N9Q9HcaGcaT88B.1.1.1890.012103
N9Q9HcaGcaT88B.1.1.3050.030888
N9Q9HcaGcaT88B.1.2210.000568
N9Q9RcAgcGg88B.1.2580.000532
N9Q9QcaGcaA88B.1.4290.000188
N9Q9HcaGcaT88P.1.40.007812
N9Q9YCaGTaT67All0.000001
N9Q9YCaGTaC17All0
N9Q9QcaGcaA77AY.250.000042
N9Q9LcAgcTg77AY.5.40.001937
N9Q9KCagAag77AY.750.000392
N9Q9KCagAag77B.10.000064
N9Q9QcaGcaA77B.10.000064
N9Q9HcaGcaT77B.1.1.10.002287
N9Q9HcaGcaT77B.1.1.2840.000752
N9Q9HcaGcaT77B.1.177.210.000535
N9Q9HcaGcaT77B.1.5950.001827
N9Q9KCagAag77B.1.617.20.000026
N9Q9HcaGcaT66A.270.009934
N9Q9HcaGcaT66AY.160.002278
N9Q9HcaGcaC56AY.270.000324
N9Q9HcaGcaT16AY.270.000065
N9Q9QcaGcaA66AY.340.000582
N9Q9LcAgcTg66AY.460.000624
N9Q9HcaGcaT66AY.590.003178
N9Q9HcaGcaT66AZ.20.004926
N9Q9HcaGcaT56B.1.617.10.000645
N9Q9HcaGcaC16B.1.617.10.000129
N9Q9HcaGcaT56D.20.000375
N9Q9HcaGcaC16D.20.000075
N9Q9HcaGcaT55AY.1160.001434
N9Q9HcaGcaT45AY.1170.000338
N9Q9HcaGcaC15AY.1170.000085
N9Q9HcaGcaT55AY.1180.000313
N9Q9HcaGcaT55AY.240.002155
N9Q9QcaGcaA55AY.30.00005
N9Q9KCagAag55AY.40.000008
N9Q9delCAG---55AY.430.000022
N9Q9QcaGcaA55AY.440.00003
N9Q9HcaGcaT55AY.510.004545
N9Q9LcAgcTg55AY.680.001369
N9Q9HcaGcaT55AY.930.001365
N9Q9RcAgcGg55B.10.000046
N9Q9HcaGcaT55B.1.1.3260.008803
N9Q9RcAgcGg55B.1.1.630.001929
N9Q9RcAgcGg55B.1.20.000044
N9Q9QcaGcaA55B.1.20.000044
N9Q9KCagAag55B.1.2210.000355
N9Q9QcaGcaA55B.1.2430.000348
N9Q9HcaGcaT55B.1.2790.002568
N9Q9RcAgcGg55B.1.4290.000118
N9Q9YCaGTaT55B.1.4290.000118
N9Q9RcAgcGg45B.1.617.20.000015
N9Q9RcAGcGA15B.1.617.20.000004
N9Q9HcaGcaT55B.1.6250.011765
N9Q9HcaGcaT55C.160.005302
N9Q9RcAgcGg44AB.10.032787
N9Q9VCAgGTg44All0.000001
N9Q9ECagGag44AY.1020.000106
N9Q9LcAgcTg44AY.1020.000106
N9Q9QcaGcaA44AY.1030.000025
N9Q9HcaGcaT44AY.1050.002572
N9Q9HcaGcaC24AY.1100.000225
N9Q9HcaGcaT24AY.1100.000225
N9Q9HcaGcaT44AY.1190.000141
N9Q9HcaGcaT44AY.120.001264
N9Q9RcAgcGg44AY.30.00004
N9Q9VCAgGTg44AY.430.000018
N9Q9RcAgcGg44AY.440.000024
N9Q9HcaGcaT44AY.75.10.000721
N9Q9LcAgcTg44AY.980.000316
N9Q9HcaGcaT44B0.000511
N9Q9HcaGcaT44B.1.1.2190.02
N9Q9HcaGcaT44B.1.1.630.001543
N9Q9HcaGcaT34B.1.177.70.000495
N9Q9HcaGcaC14B.1.177.70.000165
N9Q9HcaGcaT44B.1.3670.00317
N9Q9HcaGcaT44B.1.4040.005208
N9Q9HcaGcaT34B.1.6210.000266
N9Q9HcaGcaC14B.1.6210.000089
N9Q9LcAgcTg44P.10.000063
N9Q9HcaGcaT44P.1.150.000929
N9Q9RcAgcGg44R.10.00036
N9Q9QcaGcaA44S.10.019802
N9Q9NCaGAaC23All0
N9Q9del1caGca-13All0
N9Q9del1CAg-Cg13All0
N9Q9NCaGAaT13All0
N9Q9del1cAGc-C13All0
N9Q9HcaGcaT23AY.100.00106
N9Q9HcaGcaC13AY.100.00053
N9Q9HcaGcaT33AY.1060.001005
N9Q9HcaGcaT33AY.1110.000549
N9Q9LcAgcTg33AY.1160.00086
N9Q9QcaGcaA33AY.1200.000112
N9Q9LcAgcTg33AY.230.000209
N9Q9RcAgcGg33AY.270.000194
N9Q9QcaGcaA33AY.290.000047
N9Q9LcAgcTg33AY.330.0002
N9Q9LcAgcTg33AY.34.10.00153
N9Q9HcaGcaT33AY.360.000445
N9Q9QcaGcaA33AY.430.000013
N9Q9LcAgcTg33AY.450.000365
N9Q9QcaGcaA33AY.470.000093
N9Q9HcaGcaT33AY.5.40.00083
N9Q9LcAgcTg33AY.540.000286
N9Q9HcaGcaT33AY.680.000821
N9Q9QcaGcaA33AY.750.000168
N9Q9HcaGcaC23AY.90.000135
N9Q9HcaGcaT13AY.90.000068
N9Q9LcAgcTg33AY.930.000819
N9Q9XCagTag33B.10.000027
N9Q9HcaGcaT33B.1.1.1410.006036
N9Q9HcaGcaT33B.1.1.2040.009119
N9Q9HcaGcaT33B.1.1.3060.001315
N9Q9HcaGcaT33B.1.1.4090.008499
N9Q9delCAG---33B.1.1.70.000003
N9Q9HcaGcaT33B.1.1390.002199
N9Q9QcaGcaA33B.1.1770.00004
N9Q9KCagAag33B.1.177.90.003995
N9Q9HcaGcaT33B.1.1890.012876
N9Q9HcaGcaT33B.1.2400.000647
N9Q9HcaGcaT33B.1.3690.000856
N9Q9QcaGcaA33B.1.4270.000151
N9Q9HcaGcaT33B.1.6090.001438
N9Q9HcaGcaT33B.1.6180.012097
N9Q9LcAgcTg33B.400.001093
N9Q9HcaGcaT33B.60.00273
N9Q9HcaGcaT33N.40.012766
N9Q9HcaGcaT33P.1.70.000958
N9Q9HcaGcaT23Q.80.00033
N9Q9HcaGcaC13Q.80.000165
N9Q9QcaGcaA22A.23.10.001408
N9Q9MCAgATg22All0
N9Q9HcaGcaT22AY.10.000791
N9Q9LcAgcTg22AY.100.00106
N9Q9KCagAag22AY.1000.000092
N9Q9LcAgcTg22AY.1110.000366
N9Q9LcAgcTg22AY.1190.000071
N9Q9RcAgcGg22AY.1200.000074
N9Q9QcaGcaA22AY.130.000322
N9Q9HcaGcaT22AY.140.000176
N9Q9HcaGcaT22AY.170.016393
N9Q9ECagGag22AY.250.000012
N9Q9HcaGcaT22AY.340.000194
N9Q9LcAgcTg22AY.360.000296
N9Q9HcaGcaT22AY.380.000999
N9Q9MCAgATg22AY.430.000009
N9Q9delCAG---22AY.440.000012
N9Q9delCAG---22AY.460.000208
N9Q9QcaGcaA22AY.460.000208
N9Q9HcaGcaT22AY.46.20.001271
N9Q9RcAgcGg22AY.470.000062
N9Q9ECagGag22AY.470.000062
N9Q9KCagAag22AY.470.000062
N9Q9HcaGcaT22AY.490.00639
N9Q9LcAgcTg22AY.50.000041
N9Q9HcaGcaT22AY.5.30.000675
N9Q9HcaGcaT22AY.550.001835
N9Q9QcaGcaA22AY.60.000082
N9Q9QcaGcaA22AY.610.00021
N9Q9KCagAag22AY.75.10.000361
N9Q9LcAgcTg22AY.90.000135
N9Q9LcAgcTg22AY.920.000575
N9Q9HcaGcaT22AY.99.10.003106
N9Q9QcaGcaA22B.1.1.1290.018349
N9Q9HcaGcaC12B.1.1.1610.003534
N9Q9HcaGcaT12B.1.1.1610.003534
N9Q9HcaGcaT22B.1.1.1740.006757
N9Q9HcaGcaT12B.1.1.2160.00089
N9Q9HcaGcaC12B.1.1.2160.00089
N9Q9HcaGcaT22B.1.1.2830.046512
N9Q9HcaGcaT22B.1.1.2910.001485
N9Q9HcaGcaT22B.1.1.2940.002532
N9Q9QcaGcaA22B.1.1.3170.000823
N9Q9HcaGcaT22B.1.1.3180.000604
N9Q9QcaGcaA22B.1.1.4090.005666
N9Q9HcaGcaT22B.1.1190.021053
N9Q9QcaGcaA22B.1.1600.000062
N9Q9delCAG---22B.1.160.320.008584
N9Q9HcaGcaT22B.1.177.440.001038
N9Q9HcaGcaT12B.1.177.570.000281
N9Q9HcaGcaC12B.1.177.570.000281
N9Q9HcaGcaT22B.1.177.60.001953
N9Q9QcaGcaA22B.1.177.70.00033
N9Q9XCagTag22B.1.20.000018
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