CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 86

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N86Y86YsyntaCtaT91569156128529-28531
N86Y86HnonsynTacCac11100.90909128529-28531
N86Y86HnonsynTaCCaT1110.090909128529-28531
N86Y86deldelTAC---88128529-28531
N86Y86CnonsyntActGc88128529-28531
N86Y86XnonsyntaCtaA530.628529-28531
N86Y86XnonsyntACtGA510.228529-28531
N86Y86XnonsyntaCtaG510.228529-28531
N86Y86DnonsynTacGac22128529-28531
N86Y86del1deltaCta-210.528529-28531
N86Y86del1deltAct-c210.528529-28531
N86Y86FnonsyntACtTT11128529-28531
N86Y86NnonsynTacAac11128529-28531
N86Y86del2deltACt--11128529-28531

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N86Y86YtaCtaT91569156All0.001751
N86Y86YtaCtaT34503450B.1.5260.081091
N86Y86YtaCtaT15211521B.1.1.70.001362
N86Y86YtaCtaT938938AY.40.00146
N86Y86YtaCtaT284284B.1.6340.972603
N86Y86YtaCtaT208208B.1.575.21
N86Y86YtaCtaT202202B.1.20.001779
N86Y86YtaCtaT180180B.1.617.20.000678
N86Y86YtaCtaT9292AY.250.000553
N86Y86YtaCtaT9191B.1.595.40.664234
N86Y86YtaCtaT8787B.1.1770.001146
N86Y86YtaCtaT8181AY.1030.000503
N86Y86YtaCtaT7979B.1.4290.001859
N86Y86YtaCtaT7878AY.430.000346
N86Y86YtaCtaT7676AY.540.007246
N86Y86YtaCtaT7575AY.30.000746
N86Y86YtaCtaT6868AY.290.001073
N86Y86YtaCtaT6666AY.29.10.014553
N86Y86YtaCtaT5858AY.440.000353
N86Y86YtaCtaT5454AY.200.002099
N86Y86YtaCtaT5353P.50.726027
N86Y86YtaCtaT4545C.370.005223
N86Y86YtaCtaT3939B.10.000357
N86Y86YtaCtaT3838B.1.1.2840.004081
N86Y86YtaCtaT3838B.1.6370.002777
N86Y86YtaCtaT3737AY.230.002581
N86Y86YtaCtaT3737AY.340.003588
N86Y86YtaCtaT3737B.1.2430.002575
N86Y86YtaCtaT3232B.1.2580.00213
N86Y86YtaCtaT3030AY.50.000619
N86Y86YtaCtaT2929B.1.1600.000904
N86Y86YtaCtaT2828AY.390.000692
N86Y86YtaCtaT2323AY.60.000946
N86Y86YtaCtaT2323B.1.3510.000684
N86Y86YtaCtaT2222AY.260.000623
N86Y86YtaCtaT2121P.10.000331
N86Y86YtaCtaT2020AY.4.20.000434
N86Y86YtaCtaT1919AY.1020.000504
N86Y86YtaCtaT1919AY.360.002816
N86Y86YtaCtaT1919B.1.1.5190.000755
N86Y86YtaCtaT1818AY.1180.001128
N86Y86YtaCtaT1818AY.140.001584
N86Y86YtaCtaT1818AY.420.000724
N86Y86YtaCtaT1717AY.98.10.000823
N86Y86YtaCtaT1717B.1.5250.001924
N86Y86YtaCtaT1616B.1.10.00029
N86Y86YtaCtaT1515AY.130.002415
N86Y86YtaCtaT1515AY.39.10.000594
N86Y86YtaCtaT1515AY.90.001014
N86Y86YtaCtaT1515B.1.1.1410.030181
N86Y86YtaCtaT1414AY.1190.000494
N86Y86YtaCtaT1414B.1.5240.019691
N86Y86YtaCtaT1212AY.99.20.001106
N86Y86YtaCtaT1212B.1.2210.000852
N86Y86HTacCac1011All0.000002
N86Y86HTaCCaT111All0
N86Y86YtaCtaT1111AY.1200.000409
N86Y86YtaCtaT1111AY.330.000735
N86Y86YtaCtaT1111AY.4.50.001182
N86Y86YtaCtaT1111B.1.5750.003337
N86Y86YtaCtaT1010AY.980.00079
N86Y86YtaCtaT1010B.1.177.210.000765
N86Y86YtaCtaT99AY.1000.000414
N86Y86YtaCtaT99AY.750.000504
N86Y86YtaCtaT99B.1.177.600.001966
N86Y86YtaCtaT99C.36.30.005105
N86Y86CtActGc88All0.000002
N86Y86delTAC---88All0.000002
N86Y86YtaCtaT88AY.46.60.000578
N86Y86YtaCtaT88AY.9.10.00067
N86Y86YtaCtaT88B.1.258.170.000832
N86Y86YtaCtaT88B.1.3690.002282
N86Y86YtaCtaT88B.1.4270.000404
N86Y86YtaCtaT88B.1.619.10.005131
N86Y86YtaCtaT88B.1.6210.000708
N86Y86YtaCtaT88B.1.6280.002819
N86Y86YtaCtaT88P.40.030418
N86Y86YtaCtaT77AY.470.000218
N86Y86YtaCtaT77B.1.1.2140.000388
N86Y86YtaCtaT77B.1.177.580.009321
N86Y86YtaCtaT77B.1.214.20.004197
N86Y86YtaCtaT77B.1.5960.00061
N86Y86YtaCtaT77Q.80.001154
N86Y86YtaCtaT66AY.46.30.005602
N86Y86YtaCtaT66B.1.1.1890.009077
N86Y86YtaCtaT66B.1.2320.003224
N86Y86YtaCtaT66B.1.5950.001566
N86Y86YtaCtaT66B.1.6200.005676
N86Y86XtaCtaA35All0.000001
N86Y86XtACtGA15All0
N86Y86XtaCtaG15All0
N86Y86YtaCtaT55AY.1130.000712
N86Y86YtaCtaT55AY.1170.000423
N86Y86YtaCtaT55AY.120.00158
N86Y86YtaCtaT55AY.3.10.000426
N86Y86YtaCtaT55AY.460.00052
N86Y86YtaCtaT55AY.46.40.000823
N86Y86YtaCtaT55AY.610.000524
N86Y86YtaCtaT55AY.740.000578
N86Y86YtaCtaT55B.1.1.3480.003981
N86Y86YtaCtaT55B.1.177.770.003631
N86Y86YtaCtaT55B.1.177.810.000947
N86Y86YtaCtaT55B.1.617.10.000645
N86Y86YtaCtaT55D.20.000375
N86Y86YtaCtaT55Q.10.000632
N86Y86HTacCac440.222222
N86Y86YtaCtaT44AY.1070.001864
N86Y86YtaCtaT44AY.270.000259
N86Y86YtaCtaT44AY.620.001743
N86Y86YtaCtaT44AY.7.10.000451
N86Y86YtaCtaT44AY.9.20.000147
N86Y86YtaCtaT44AY.930.001092
N86Y86YtaCtaT44B.1.1.1570.003653
N86Y86YtaCtaT44B.1.1.3170.001647
N86Y86YtaCtaT44B.1.1.3180.001207
N86Y86YtaCtaT44B.1.1.4640.005891
N86Y86YtaCtaT44B.1.1390.002933
N86Y86YtaCtaT44B.1.177.100.003512
N86Y86YtaCtaT44B.1.177.860.000734
N86Y86YtaCtaT44B.1.2340.000528
N86Y86YtaCtaT44B.1.2360.008214
N86Y86YtaCtaT44B.1.5230.009804
N86Y86YtaCtaT44B.1.617.30.01194
N86Y86YtaCtaT44B.1.6230.002146
N86Y86YtaCtaT44P.1.10.001271
N86Y86YtaCtaT33AY.10.001187
N86Y86YtaCtaT33AY.1210.000406
N86Y86YtaCtaT33AY.350.000699
N86Y86YtaCtaT33AY.5.30.001012
N86Y86YtaCtaT33AY.5.40.00083
N86Y86YtaCtaT33AY.530.000863
N86Y86YtaCtaT33B0.000383
N86Y86YtaCtaT33B.1.1.10.00098
N86Y86YtaCtaT33B.1.1.100.003344
N86Y86YtaCtaT33B.1.177.820.001432
N86Y86YtaCtaT33B.1.177.90.003995
N86Y86YtaCtaT33B.1.2400.000647
N86Y86YtaCtaT33B.1.3670.002377
N86Y86YtaCtaT33B.1.5170.001281
N86Y86YtaCtaT33B.1.6250.007059
N86Y86YtaCtaT33B.1.930.002801
N86Y86YtaCtaT33B.4.20.2
N86Y86YtaCtaT33C.380.024194
N86Y86YtaCtaT33P.1.70.000958
N86Y86YtaCtaT33P.30.004785
N86Y86DTacGac22All0
N86Y86del1tAct-c12All0
N86Y86del1taCta-12All0
N86Y86YtaCtaT22AY.1090.001479
N86Y86YtaCtaT22AY.160.000759
N86Y86YtaCtaT22AY.16.10.00094
N86Y86YtaCtaT22AY.23.10.000835
N86Y86YtaCtaT22AY.300.000791
N86Y86YtaCtaT22AY.450.000243
N86Y86YtaCtaT22AY.820.002714
N86Y86YtaCtaT22AY.940.000885
N86Y86HTacCac22B.1.10.000036
N86Y86YtaCtaT22B.1.1.1530.002191
N86Y86YtaCtaT22B.1.1.1860.006873
N86Y86YtaCtaT22B.1.1.2220.000408
N86Y86YtaCtaT22B.1.1.2400.00939
N86Y86YtaCtaT22B.1.1.2660.02439
N86Y86YtaCtaT22B.1.1.2690.002706
N86Y86YtaCtaT22B.1.1.280.000622
N86Y86YtaCtaT22B.1.1.3110.000716
N86Y86YtaCtaT22B.1.1.330.000842
N86Y86YtaCtaT22B.1.1.3720.001377
N86Y86YtaCtaT22B.1.1.4620.017241
N86Y86YtaCtaT22B.1.1.500.001358
N86Y86YtaCtaT22B.1.1.510.003436
N86Y86YtaCtaT22B.1.1.5280.009615
N86Y86YtaCtaT22B.1.1.630.000772
N86Y86YtaCtaT22B.1.110.30.001437
N86Y86YtaCtaT22B.1.160.160.001859
N86Y86HTacCac22B.1.1770.000026
N86Y86YtaCtaT22B.1.177.200.003035
N86Y86YtaCtaT22B.1.177.50.002484
N86Y86YtaCtaT22B.1.177.650.001331
N86Y86YtaCtaT22B.1.177.70.00033
N86Y86YtaCtaT22B.1.177.830.002963
N86Y86YtaCtaT22B.1.2410.001623
N86Y86YtaCtaT22B.1.3480.036364
N86Y86YtaCtaT22B.1.3970.009709
N86Y86YtaCtaT22B.1.438.10.000215
N86Y86YtaCtaT22B.1.466.20.000782
N86Y86YtaCtaT22B.1.4970.00063
N86Y86YtaCtaT22B.1.5600.009259
N86Y86YtaCtaT22B.1.5740.004301
N86Y86XtaCtaA12B.1.617.20.000004
N86Y86XtaCtaG12B.1.617.20.000004
N86Y86YtaCtaT22B.1.6260.011429
N86Y86YtaCtaT22B.400.000729
N86Y86YtaCtaT22C.200.153846
N86Y86YtaCtaT22N.50.003534
N86Y86YtaCtaT22P.1.140.000096
N86Y86YtaCtaT22Q.40.00091
N86Y86YtaCtaT22R.10.00018
N86Y86YtaCtaT22W.30.010526
N86Y86YtaCtaT11A0.000387
N86Y86YtaCtaT11A.2.50.000499
N86Y86YtaCtaT11AD.20.000219
N86Y86NTacAac11All0
N86Y86del2tACt--11All0
N86Y86FtACtTT11All0
N86Y86YtaCtaT11AM.20.111111
N86Y86YtaCtaT11AP.10.001502
N86Y86YtaCtaT11AY.1040.001984
N86Y86YtaCtaT11AY.1050.000643
N86Y86YtaCtaT11AY.1080.001103
N86Y86YtaCtaT11AY.1100.000113
N86Y86YtaCtaT11AY.1160.000287
N86Y86YtaCtaT11AY.116.10.000311
N86Y86YtaCtaT11AY.210.001898
N86Y86DTacGac11AY.230.00007
N86Y86XtACtGA11AY.230.00007
N86Y86CtActGc11AY.30.00001
N86Y86YtaCtaT11AY.370.000316
N86Y86YtaCtaT11AY.39.1.10.000725
N86Y86YtaCtaT11AY.4.2.10.000149
N86Y86FtACtTT11AY.400.000964
N86Y86YtaCtaT11AY.400.000964
N86Y86delTAC---11AY.430.000004
N86Y86CtActGc11AY.430.000004
N86Y86CtActGc11AY.440.000006
N86Y86HTaCCaT11AY.440.000006
N86Y86CtActGc11AY.670.000464
N86Y86del1taCta-11AY.670.000464
N86Y86YtaCtaT11AY.710.000475
N86Y86YtaCtaT11AY.75.10.00018
N86Y86XtaCtaA11AY.790.001211
N86Y86YtaCtaT11AY.850.000427
N86Y86YtaCtaT11AY.900.000684
N86Y86YtaCtaT11AY.910.00073
N86Y86YtaCtaT11AY.920.000287
N86Y86YtaCtaT11AZ.10.000867
N86Y86NTacAac11B.10.000009
N86Y86HTacCac11B.10.000009
N86Y86XtaCtaA11B.10.000009
N86Y86delTAC---11B.1.10.000018
N86Y86YtaCtaT11B.1.1.1110.014706
N86Y86YtaCtaT11B.1.1.1230.017857
N86Y86YtaCtaT11B.1.1.1800.010753
N86Y86YtaCtaT11B.1.1.2070.001182
N86Y86YtaCtaT11B.1.1.2160.00089
N86Y86YtaCtaT11B.1.1.2190.005
N86Y86YtaCtaT11B.1.1.2200.001859
N86Y86YtaCtaT11B.1.1.2300.009174
N86Y86CtActGc11B.1.1.250.000569
N86Y86YtaCtaT11B.1.1.250.000569
N86Y86YtaCtaT11B.1.1.2510.007937
N86Y86YtaCtaT11B.1.1.2770.000759
N86Y86YtaCtaT11B.1.1.2800.003086
N86Y86YtaCtaT11B.1.1.2940.001266
N86Y86YtaCtaT11B.1.1.3120.001912
N86Y86YtaCtaT11B.1.1.3200.018182
N86Y86YtaCtaT11B.1.1.3370.003597
N86Y86YtaCtaT11B.1.1.3490.010309
N86Y86YtaCtaT11B.1.1.370.000193
N86Y86YtaCtaT11B.1.1.3890.006061
N86Y86YtaCtaT11B.1.1.3910.008547
N86Y86YtaCtaT11B.1.1.3980.003226
N86Y86YtaCtaT11B.1.1.4160.000905
N86Y86YtaCtaT11B.1.1.4340.000349
N86Y86YtaCtaT11B.1.1.490.017544
N86Y86HTacCac11B.1.1.70.000001
N86Y86delTAC---11B.1.1.70.000001
N86Y86YtaCtaT11B.1.1.700.000341
N86Y86CtActGc11B.1.1770.000013
N86Y86YtaCtaT11B.1.177.120.000152
N86Y86YtaCtaT11B.1.177.160.000664
N86Y86YtaCtaT11B.1.177.170.000821
N86Y86YtaCtaT11B.1.177.30.007634
N86Y86YtaCtaT11B.1.177.450.000381
N86Y86YtaCtaT11B.1.177.520.001757
N86Y86YtaCtaT11B.1.177.540.000606
N86Y86YtaCtaT11B.1.177.550.002331
N86Y86YtaCtaT11B.1.177.570.000281
N86Y86YtaCtaT11B.1.177.620.001192
N86Y86delTAC---11B.1.177.630.002703
N86Y86YtaCtaT11B.1.177.730.000566
N86Y86CtActGc11B.1.20.000009
N86Y86YtaCtaT11B.1.221.30.000833
N86Y86YtaCtaT11B.1.2220.001692
N86Y86YtaCtaT11B.1.230.006061
N86Y86YtaCtaT11B.1.243.20.014493
N86Y86YtaCtaT11B.1.2500.014493
N86Y86YtaCtaT11B.1.258.140.00098
N86Y86YtaCtaT11B.1.2980.002114
N86Y86YtaCtaT11B.1.3230.020833
N86Y86YtaCtaT11B.1.3240.001605
N86Y86YtaCtaT11B.1.3370.005587
N86Y86YtaCtaT11B.1.3490.000715
N86Y86YtaCtaT11B.1.360.000146
N86Y86YtaCtaT11B.1.36.160.001425
N86Y86YtaCtaT11B.1.36.350.002604
N86Y86DTacGac11B.1.3620.001541
N86Y86YtaCtaT11B.1.3850.010638
N86Y86YtaCtaT11B.1.4000.000429
N86Y86YtaCtaT11B.1.4040.001302
N86Y86delTAC---11B.1.4150.014286
N86Y86YtaCtaT11B.1.4260.001009
N86Y86delTAC---11B.1.4270.00005
N86Y86YtaCtaT11B.1.4700.001404
N86Y86YtaCtaT11B.1.4990.00105
N86Y86YtaCtaT11B.1.5610.000397
N86Y86YtaCtaT11B.1.5640.000426
N86Y86YtaCtaT11B.1.5770.000687
N86Y86delTAC---11B.1.5820.000491
N86Y86YtaCtaT11B.1.5820.000491
N86Y86YtaCtaT11B.1.6060.006024
N86Y86CtActGc11B.1.617.20.000004
N86Y86del2tACt--11B.1.617.20.000004
N86Y86del1tAct-c11B.1.617.20.000004
N86Y86YtaCtaT11B.1.6190.000871
N86Y86YtaCtaT11B.1.621.10.000506
N86Y86YtaCtaT11B.1.88.10.004808
N86Y86YtaCtaT11B.3.10.001658
N86Y86YtaCtaT11C.10.002392
N86Y86YtaCtaT11C.140.004329
N86Y86YtaCtaT11C.350.000774
N86Y86YtaCtaT11D.30.005917
N86Y86YtaCtaT11K.10.02381
N86Y86YtaCtaT11N.40.004255
N86Y86delTAC---11P.10.000016
N86Y86YtaCtaT11P.1.120.000484
N86Y86YtaCtaT11P.1.130.000898
N86Y86YtaCtaT11P.1.160.000374
N86Y86YtaCtaT11P.1.170.000162
N86Y86YtaCtaT11P.70.004367
N86Y86YtaCtaT11Q.30.000145
N86Y86YtaCtaT11W.40.001351