CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 84

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N84I84VnonsynAttGtt7447420.99731228523-28525
N84I84VnonsynAtTGtG74410.0013440928523-28525
N84I84VnonsynAtTGtA74410.0013440928523-28525
N84I84IsynatTatC17130.76470628523-28525
N84I84TnonsynaTtaCt17120.70588228523-28525
N84I84TnonsynaTTaCG1750.29411828523-28525
N84I84IsynatTatA1740.23529428523-28525
N84I84SnonsynaTtaGt99128523-28525
N84I84deldelATT---88128523-28525
N84I84LnonsynAttCtt420.528523-28525
N84I84LnonsynAtTCtG410.2528523-28525
N84I84LnonsynAtTTtG410.2528523-28525
N84I84FnonsynAttTtt33128523-28525
N84I84MnonsynatTatG33128523-28525
N84I84del2delaTTa--22128523-28525
N84I84del1delaTta-t11128523-28525

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N84I84VAttGtt742744All0.000142
N84I84VAtTGtG1744All0
N84I84VAtTGtA1744All0
N84I84VAttGtt378379B.1.10.006857
N84I84VAtTGtA1379B.1.10.000018
N84I84VAttGtt115115B.1.1.3290.442308
N84I84VAttGtt110110B.1.1.2370.594595
N84I84VAttGtt2525B.1.1.4190.185185
N84I84IatTatC1317All0.000002
N84I84TaTtaCt1217All0.000002
N84I84TaTTaCG517All0.000001
N84I84IatTatA417All0.000001
N84I84VAttGtt1717B.10.000156
N84I84VAttGtt1414B.1.1650.166667
N84I84VAttGtt1313B.1.6380.684211
N84I84SaTtaGt99All0.000002
N84I84delATT---88All0.000002
N84I84IatTatC67B.1.1.70.000005
N84I84IatTatA17B.1.1.70.000001
N84I84VAttGtt66AY.50.000124
N84I84VAttGtt55B.1.1.70.000004
N84I84VAttGtt55B.1.2410.004058
N84I84VAttGtt55B.1.438.10.000536
N84I84TaTTaCG440.222222
N84I84SaTtaGt440.222222
N84I84LAttCtt24All0
N84I84LAtTTtG14All0
N84I84LAtTCtG14All0
N84I84VAttGtt44B.1.1.10.001307
N84I84FAttTtt33All0.000001
N84I84MatTatG33All0.000001
N84I84TaTtaCt23B.1.1.70.000002
N84I84TaTTaCG13B.1.1.70.000001
N84I84VAttGtt33B.1.4290.000071
N84I84VAttGtt33B.1.617.20.000011
N84I84del2aTTa--22All0
N84I84VAttGtt22AY.1200.000074
N84I84VAttGtt22AY.40.000003
N84I84LAtTTtG12AY.430.000004
N84I84LAttCtt12AY.430.000004
N84I84FAttTtt22AY.440.000012
N84I84VAttGtt22B.1.1.2200.003717
N84I84VAttGtt22B.1.1.3720.001377
N84I84VAttGtt22B.1.1.4320.002532
N84I84VAttGtt22B.1.1.4480.004065
N84I84SaTtaGt22B.1.1.70.000002
N84I84IatTatA12B.1.20.000009
N84I84IatTatC12B.1.20.000009
N84I84del2aTTa--22B.1.6270.00404
N84I84VAttGtt22P.10.000032
N84I84del1aTta-t11A.10.000282
N84I84del1aTta-t11All0
N84I84VAttGtt11AV.10.005051
N84I84TaTtaCt11AY.1020.000027
N84I84TaTtaCt11AY.1170.000085
N84I84VAttGtt11AY.230.00007
N84I84IatTatC11AY.250.000006
N84I84VAttGtt11AY.260.000028
N84I84VAttGtt11AY.290.000016
N84I84IatTatC11AY.30.00001
N84I84VAttGtt11AY.30.00001
N84I84delATT---11AY.30.00001
N84I84IatTatC11AY.40.000002
N84I84VAtTGtG11AY.400.000964
N84I84TaTtaCt11AY.430.000004
N84I84TaTtaCt11AY.440.000006
N84I84SaTtaGt11AY.440.000006
N84I84LAtTCtG11AY.440.000006
N84I84VAttGtt11AY.470.000031
N84I84delATT---11AY.670.000464
N84I84MatTatG11AY.820.001357
N84I84VAttGtt11AY.99.20.000092
N84I84SaTtaGt11B0.000128
N84I84LAttCtt11B.10.000009
N84I84TaTtaCt11B.1.10.000018
N84I84delATT---11B.1.10.000018
N84I84IatTatC11B.1.10.000018
N84I84VAttGtt11B.1.1.280.000311
N84I84MatTatG11B.1.1.2910.000742
N84I84VAttGtt11B.1.1.2940.001266
N84I84VAttGtt11B.1.1.3360.016667
N84I84SaTtaGt11B.1.1.3980.003226
N84I84VAttGtt11B.1.1.4090.002833
N84I84IatTatC11B.1.1.4340.000349
N84I84VAttGtt11B.1.1.460.004367
N84I84VAttGtt11B.1.1.5250.005464
N84I84FAttTtt11B.1.1.70.000001
N84I84delATT---11B.1.1.70.000001
N84I84VAttGtt11B.1.1.700.000341
N84I84VAttGtt11B.1.1110.001175
N84I84TaTtaCt11B.1.1770.000013
N84I84delATT---11B.1.177.630.002703
N84I84VAttGtt11B.1.20.000009
N84I84TaTtaCt11B.1.20.000009
N84I84VAttGtt11B.1.243.10.022222
N84I84MatTatG11B.1.3320.003497
N84I84TaTtaCt11B.1.360.000146
N84I84VAttGtt11B.1.360.000146
N84I84VAttGtt11B.1.3990.001934
N84I84delATT---11B.1.4150.014286
N84I84delATT---11B.1.4270.00005
N84I84IatTatA11B.1.4590.004082
N84I84VAttGtt11B.1.466.20.000391
N84I84IatTatA11B.1.5260.000024
N84I84TaTtaCt11B.1.5260.000024
N84I84VAttGtt11B.1.5960.000087
N84I84VAttGtt11B.1.6090.000479
N84I84VAttGtt11B.1.617.10.000129
N84I84TaTtaCt11B.1.6210.000089
N84I84VAttGtt11B.1.6370.000073
N84I84VAttGtt11C.60.037037
N84I84delATT---11P.10.000016
N84I84IatTatC11Q.80.000165