CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 80 | P80R | nonsyn | cCa | cGa | 114785 | 114772 | 0.999887 | 28511-28513 | |
N | 80 | P80R | nonsyn | cCA | cGC | 114785 | 10 | 0.0000871194 | 28511-28513 | |
N | 80 | P80R | nonsyn | cCA | cGG | 114785 | 3 | 0.0000261358 | 28511-28513 | |
N | 80 | P80S | nonsyn | Cca | Tca | 1207 | 1204 | 0.997514 | 28511-28513 | |
N | 80 | P80S | nonsyn | CcA | TcC | 1207 | 1 | 0.0008285 | 28511-28513 | |
N | 80 | P80S | nonsyn | CcA | TcG | 1207 | 1 | 0.0008285 | 28511-28513 | |
N | 80 | P80S | nonsyn | CcA | TcT | 1207 | 1 | 0.0008285 | 28511-28513 | |
N | 80 | P80Q | nonsyn | cCa | cAa | 601 | 601 | 1 | 28511-28513 | |
N | 80 | P80A | nonsyn | Cca | Gca | 565 | 565 | 1 | 28511-28513 | |
N | 80 | P80L | nonsyn | cCa | cTa | 491 | 490 | 0.997963 | 28511-28513 | |
N | 80 | P80L | nonsyn | cCA | cTC | 491 | 1 | 0.00203666 | 28511-28513 | |
N | 80 | P80P | syn | ccA | ccG | 355 | 197 | 0.55493 | 28511-28513 | |
N | 80 | P80P | syn | ccA | ccT | 355 | 106 | 0.298592 | 28511-28513 | |
N | 80 | P80P | syn | ccA | ccC | 355 | 52 | 0.146479 | 28511-28513 | |
N | 80 | P80T | nonsyn | Cca | Aca | 75 | 74 | 0.986667 | 28511-28513 | |
N | 80 | P80T | nonsyn | CcA | AcG | 75 | 1 | 0.0133333 | 28511-28513 | |
N | 80 | P80del | del | CCA | --- | 13 | 13 | 1 | 28511-28513 | |
N | 80 | P80del1 | del | ccA | cc- | 6 | 2 | 0.333333 | 28511-28513 | |
N | 80 | P80del1 | del | Cca | -ca | 6 | 2 | 0.333333 | 28511-28513 | |
N | 80 | P80del1 | del | CCa | -Ta | 6 | 2 | 0.333333 | 28511-28513 | |
N | 80 | P80V | nonsyn | CCa | GTa | 4 | 4 | 1 | 28511-28513 | |
N | 80 | P80del2 | del | CCa | --a | 3 | 3 | 1 | 28511-28513 | |
N | 80 | P80X | nonsyn | CCA | TAG | 2 | 1 | 0.5 | 28511-28513 | |
N | 80 | P80X | nonsyn | CCa | TAa | 2 | 1 | 0.5 | 28511-28513 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 80 | P80R | cCa | cGa | 114772 | 114785 | All | 0.021952 |
N | 80 | P80R | cCA | cGC | 10 | 114785 | All | 0.000002 |
N | 80 | P80R | cCA | cGG | 3 | 114785 | All | 0.000001 |
N | 80 | P80R | cCa | cGa | 62802 | 62815 | P.1 | 0.989382 |
N | 80 | P80R | cCA | cGC | 10 | 62815 | P.1 | 0.000158 |
N | 80 | P80R | cCA | cGG | 3 | 62815 | P.1 | 0.000047 |
N | 80 | P80R | cCa | cGa | 20880 | 20880 | P.1.14 | 0.998088 |
N | 80 | P80R | cCa | cGa | 6154 | 6154 | P.1.17 | 0.995471 |
N | 80 | P80R | cCa | cGa | 4270 | 4270 | P.1.15 | 0.9921 |
N | 80 | P80R | cCa | cGa | 3683 | 3683 | P.1.10 | 0.992455 |
N | 80 | P80R | cCa | cGa | 3102 | 3102 | P.1.7 | 0.990421 |
N | 80 | P80R | cCa | cGa | 3048 | 3048 | P.1.1 | 0.968234 |
N | 80 | P80R | cCa | cGa | 2611 | 2611 | P.1.16 | 0.976805 |
N | 80 | P80R | cCa | cGa | 1918 | 1918 | P.1.12 | 0.928364 |
N | 80 | P80S | Cca | Tca | 1204 | 1207 | All | 0.00023 |
N | 80 | P80S | CcA | TcG | 1 | 1207 | All | 0 |
N | 80 | P80S | CcA | TcT | 1 | 1207 | All | 0 |
N | 80 | P80S | CcA | TcC | 1 | 1207 | All | 0 |
N | 80 | P80R | cCa | cGa | 1138 | 1138 | P.1.17.1 | 0.995626 |
N | 80 | P80R | cCa | cGa | 1105 | 1105 | P.1.13 | 0.992812 |
N | 80 | P80R | cCa | cGa | 1023 | 1023 | P.1.4 | 0.999023 |
N | 80 | P80R | cCa | cGa | 863 | 863 | P.1.2 | 0.997688 |
N | 80 | P80Q | cCa | cAa | 601 | 601 | All | 0.000115 |
N | 80 | P80A | Cca | Gca | 565 | 565 | All | 0.000108 |
N | 80 | P80A | Cca | Gca | 544 | 544 | AY.4 | 0.000847 |
N | 80 | P80R | cCa | cGa | 510 | 510 | P.1.6 | 0.992218 |
N | 80 | P80L | cCa | cTa | 490 | 491 | All | 0.000094 |
N | 80 | P80L | cCA | cTC | 1 | 491 | All | 0 |
N | 80 | P80P | ccA | ccG | 197 | 355 | All | 0.000038 |
N | 80 | P80P | ccA | ccT | 106 | 355 | All | 0.00002 |
N | 80 | P80P | ccA | ccC | 52 | 355 | All | 0.00001 |
N | 80 | P80S | Cca | Tca | 305 | 305 | B.1.621 | 0.026998 |
N | 80 | P80Q | cCa | cAa | 210 | 210 | B.1.617.2 | 0.000791 |
N | 80 | P80R | cCa | cGa | 209 | 209 | P.1.8 | 1 |
N | 80 | P80R | cCa | cGa | 207 | 207 | P.1.9 | 0.995192 |
N | 80 | P80R | cCa | cGa | 189 | 189 | B.1.630 | 0.989529 |
N | 80 | P80R | cCa | cGa | 185 | 185 | B.1 | 0.001695 |
N | 80 | P80R | cCa | cGa | 163 | 163 | B.1.1 | 0.002957 |
N | 80 | P80P | ccA | ccT | 77 | 144 | B.1.1.7 | 0.000069 |
N | 80 | P80P | ccA | ccC | 35 | 144 | B.1.1.7 | 0.000031 |
N | 80 | P80P | ccA | ccG | 32 | 144 | B.1.1.7 | 0.000029 |
N | 80 | P80R | cCa | cGa | 112 | 112 | P.1.10.1 | 0.910569 |
N | 80 | P80S | Cca | Tca | 110 | 110 | B.1.1.7 | 0.000098 |
N | 80 | P80S | Cca | Tca | 105 | 105 | B.1.617.2 | 0.000395 |
N | 80 | P80R | cCa | cGa | 98 | 98 | P.1.11 | 1 |
N | 80 | P80S | Cca | Tca | 97 | 97 | AY.3 | 0.000965 |
N | 80 | P80P | ccA | ccG | 86 | 90 | AY.4 | 0.000134 |
N | 80 | P80P | ccA | ccC | 2 | 90 | AY.4 | 0.000003 |
N | 80 | P80P | ccA | ccT | 2 | 90 | AY.4 | 0.000003 |
N | 80 | P80L | cCa | cTa | 88 | 88 | B.1.1.7 | 0.000079 |
N | 80 | P80S | Cca | Tca | 80 | 80 | AY.54 | 0.007628 |
N | 80 | P80S | Cca | Tca | 78 | 78 | AY.4 | 0.000121 |
N | 80 | P80T | Cca | Aca | 74 | 75 | All | 0.000014 |
N | 80 | P80T | CcA | AcG | 1 | 75 | All | 0 |
N | 80 | P80R | cCa | cGa | 47 | 47 | B.1.177.35 | 0.032481 |
N | 80 | P80Q | cCa | cAa | 40 | 40 | AY.43 | 0.000177 |
N | 80 | P80Q | cCa | cAa | 40 | 40 | AY.46.5 | 0.007937 |
N | 80 | P80S | Cca | Tca | 39 | 39 | AY.43 | 0.000173 |
N | 80 | P80R | cCa | cGa | 37 | 37 | B.1.1.528 | 0.177885 |
N | 80 | P80L | cCa | cTa | 36 | 37 | B.1.617.2 | 0.000136 |
N | 80 | P80L | cCA | cTC | 1 | 37 | B.1.617.2 | 0.000004 |
N | 80 | P80Q | cCa | cAa | 35 | 35 | B.1.1.7 | 0.000031 |
N | 80 | P80Q | cCa | cAa | 33 | 33 | AY.25 | 0.000198 |
N | 80 | P80L | cCa | cTa | 30 | 30 | AY.98 | 0.00237 |
N | 80 | P80L | cCa | cTa | 30 | 30 | B.1.177 | 0.000395 |
N | 80 | P80Q | cCa | cAa | 29 | 29 | AY.103 | 0.00018 |
N | 80 | P80Q | cCa | cAa | 29 | 29 | AY.4 | 0.000045 |
N | 80 | P80R | cCa | cGa | 29 | 29 | P.1.3 | 1 |
N | 80 | P80Q | cCa | cAa | 27 | 27 | AY.44 | 0.000164 |
N | 80 | P80R | cCa | cGa | 27 | 27 | C.37 | 0.003134 |
N | 80 | P80S | Cca | Tca | 26 | 26 | B.1.1.374 | 0.061758 |
N | 80 | P80R | cCa | cGa | 25 | 25 | C.1.2 | 0.106383 |
N | 80 | P80R | cCa | cGa | 24 | 24 | B.1.1.28 | 0.00747 |
N | 80 | P80R | cCa | cGa | 24 | 24 | P.1.10.2 | 1 |
N | 80 | P80S | Cca | Tca | 21 | 21 | B.1.177 | 0.000277 |
N | 80 | P80L | cCa | cTa | 20 | 20 | AY.4 | 0.000031 |
N | 80 | P80S | Cca | Tca | 19 | 19 | B.1.2 | 0.000167 |
N | 80 | P80L | cCa | cTa | 18 | 18 | AY.9 | 0.001217 |
N | 80 | P80R | cCa | cGa | 17 | 17 | B.1.160 | 0.00053 |
N | 80 | P80L | cCa | cTa | 17 | 17 | B.1.2 | 0.00015 |
N | 80 | P80P | ccA | ccG | 12 | 17 | B.1.617.2 | 0.000045 |
N | 80 | P80P | ccA | ccT | 3 | 17 | B.1.617.2 | 0.000011 |
N | 80 | P80P | ccA | ccC | 2 | 17 | B.1.617.2 | 0.000008 |
N | 80 | P80Q | cCa | cAa | 17 | 17 | C.35 | 0.013158 |
N | 80 | P80L | cCa | cTa | 16 | 16 | B.1.1 | 0.00029 |
N | 80 | P80Q | cCa | cAa | 16 | 16 | B.1.429 | 0.000376 |
N | 80 | P80S | Cca | Tca | 15 | 15 | AY.25 | 0.00009 |
N | 80 | P80L | cCa | cTa | 15 | 15 | B.1 | 0.000137 |
N | 80 | P80R | cCa | cGa | 15 | 15 | B.1.177 | 0.000198 |
N | 80 | P80S | Cca | Tca | 14 | 14 | B.1.177.60 | 0.003058 |
N | 80 | P80del | CCA | --- | 13 | 13 | All | 0.000002 |
N | 80 | P80S | Cca | Tca | 13 | 13 | AY.119 | 0.000459 |
N | 80 | P80S | Cca | Tca | 12 | 13 | AY.44 | 0.000073 |
N | 80 | P80S | CcA | TcG | 1 | 13 | AY.44 | 0.000006 |
N | 80 | P80S | Cca | Tca | 13 | 13 | B.1.1 | 0.000236 |
N | 80 | P80R | cCa | cGa | 13 | 13 | B.1.1.7 | 0.000012 |
N | 80 | P80R | cCa | cGa | 13 | 13 | P.1.5 | 1 |
N | 80 | P80R | cCa | cGa | 12 | 12 | B.1.1.519 | 0.000477 |
N | 80 | P80L | cCa | cTa | 12 | 12 | B.1.160 | 0.000374 |
N | 80 | P80T | Cca | Aca | 12 | 12 | B.1.2 | 0.000106 |
N | 80 | P80P | ccA | ccG | 12 | 12 | B.1.369 | 0.003423 |
N | 80 | P80S | Cca | Tca | 12 | 12 | B.1.587 | 0.02277 |
N | 80 | P80S | Cca | Tca | 12 | 12 | B.1.621.1 | 0.00607 |
N | 80 | P80T | Cca | Aca | 11 | 11 | AY.103 | 0.000068 |
N | 80 | P80R | cCa | cGa | 11 | 11 | AY.103 | 0.000068 |
N | 80 | P80Q | cCa | cAa | 11 | 11 | AY.5 | 0.000227 |
N | 80 | P80L | cCa | cTa | 11 | 11 | B.1.221 | 0.000781 |
N | 80 | P80R | cCa | cGa | 11 | 11 | B.1.429 | 0.000259 |
N | 80 | P80S | Cca | Tca | 10 | 10 | AY.103 | 0.000062 |
N | 80 | P80Q | cCa | cAa | 10 | 10 | AY.3 | 0.000099 |
N | 80 | P80L | cCa | cTa | 10 | 10 | B.1.1.214 | 0.000555 |
N | 80 | P80Q | cCa | cAa | 10 | 10 | B.1.177.81 | 0.001893 |
N | 80 | P80S | Cca | Tca | 10 | 10 | C.37 | 0.001161 |
N | 80 | P80S | Cca | Tca | 9 | 9 | AL.1 | 0.116883 |
N | 80 | P80S | Cca | Tca | 9 | 9 | AY.106 | 0.003014 |
N | 80 | P80Q | cCa | cAa | 9 | 9 | AY.120 | 0.000335 |
N | 80 | P80L | cCa | cTa | 9 | 9 | AY.44 | 0.000055 |
N | 80 | P80P | ccA | ccG | 8 | 9 | AY.44 | 0.000049 |
N | 80 | P80P | ccA | ccT | 1 | 9 | AY.44 | 0.000006 |
N | 80 | P80S | Cca | Tca | 9 | 9 | B.1 | 0.000082 |
N | 80 | P80R | cCa | cGa | 9 | 9 | B.1.214.2 | 0.005396 |
N | 80 | P80R | cCa | cGa | 9 | 9 | B.1.349 | 0.006433 |
N | 80 | P80L | cCa | cTa | 9 | 9 | B.1.396 | 0.006351 |
N | 80 | P80R | cCa | cGa | 8 | 8 | A.2.5 | 0.003992 |
N | 80 | P80S | Cca | Tca | 8 | 8 | AY.20 | 0.000311 |
N | 80 | P80S | Cca | Tca | 8 | 8 | AY.3.1 | 0.000682 |
N | 80 | P80T | Cca | Aca | 8 | 8 | AY.4 | 0.000012 |
N | 80 | P80S | Cca | Tca | 8 | 8 | AY.47 | 0.000249 |
N | 80 | P80T | Cca | Aca | 7 | 8 | B.1.1.7 | 0.000006 |
N | 80 | P80T | CcA | AcG | 1 | 8 | B.1.1.7 | 0.000001 |
N | 80 | P80L | cCa | cTa | 7 | 7 | B.1.1.519 | 0.000278 |
N | 80 | P80S | Cca | Tca | 7 | 7 | B.1.36 | 0.001021 |
N | 80 | P80S | Cca | Tca | 7 | 7 | B.1.427 | 0.000353 |
N | 80 | P80L | cCa | cTa | 7 | 7 | B.1.429 | 0.000165 |
N | 80 | P80del1 | CCa | -Ta | 2 | 6 | All | 0 |
N | 80 | P80del1 | ccA | cc- | 2 | 6 | All | 0 |
N | 80 | P80del1 | Cca | -ca | 2 | 6 | All | 0 |
N | 80 | P80Q | cCa | cAa | 6 | 6 | AY.100 | 0.000276 |
N | 80 | P80S | Cca | Tca | 6 | 6 | AY.14 | 0.000528 |
N | 80 | P80S | Cca | Tca | 6 | 6 | AY.23 | 0.000418 |
N | 80 | P80L | cCa | cTa | 6 | 6 | AY.25 | 0.000036 |
N | 80 | P80Q | cCa | cAa | 6 | 6 | AY.26 | 0.00017 |
N | 80 | P80R | cCa | cGa | 6 | 6 | AY.3 | 0.00006 |
N | 80 | P80L | cCa | cTa | 6 | 6 | AY.39.1 | 0.000238 |
N | 80 | P80Q | cCa | cAa | 6 | 6 | AY.4.4 | 0.002455 |
N | 80 | P80A | Cca | Gca | 6 | 6 | AY.4.5 | 0.000645 |
N | 80 | P80R | cCa | cGa | 6 | 6 | AY.43 | 0.000027 |
N | 80 | P80L | cCa | cTa | 6 | 6 | AY.43 | 0.000027 |
N | 80 | P80P | ccA | ccG | 6 | 6 | AY.96 | 0.012448 |
N | 80 | P80L | cCa | cTa | 6 | 6 | B.1.177.16 | 0.003987 |
N | 80 | P80R | cCa | cGa | 6 | 6 | B.1.351 | 0.000178 |
N | 80 | P80R | cCa | cGa | 6 | 6 | B.1.398 | 0.017857 |
N | 80 | P80R | cCa | cGa | 6 | 6 | B.1.617.2 | 0.000023 |
N | 80 | P80L | cCa | cTa | 6 | 6 | B.1.91 | 0.012448 |
N | 80 | P80S | Cca | Tca | 5 | 5 | AY.102 | 0.000133 |
N | 80 | P80P | ccA | ccT | 5 | 5 | AY.120 | 0.000186 |
N | 80 | P80L | cCa | cTa | 5 | 5 | AY.29 | 0.000079 |
N | 80 | P80S | Cca | Tca | 4 | 5 | AY.29 | 0.000063 |
N | 80 | P80S | CcA | TcT | 1 | 5 | AY.29 | 0.000016 |
N | 80 | P80R | cCa | cGa | 5 | 5 | AY.44 | 0.00003 |
N | 80 | P80S | Cca | Tca | 5 | 5 | AY.46.4 | 0.000823 |
N | 80 | P80P | ccA | ccT | 3 | 5 | B.1 | 0.000027 |
N | 80 | P80P | ccA | ccG | 2 | 5 | B.1 | 0.000018 |
N | 80 | P80A | Cca | Gca | 5 | 5 | B.1.1.7 | 0.000004 |
N | 80 | P80L | cCa | cTa | 5 | 5 | B.1.243 | 0.000348 |
N | 80 | P80Q | cCa | cAa | 5 | 5 | B.1.258 | 0.000333 |
N | 80 | P80S | Cca | Tca | 5 | 5 | B.1.258 | 0.000333 |
N | 80 | P80P | ccA | ccC | 5 | 5 | B.1.400 | 0.002145 |
N | 80 | P80S | Cca | Tca | 5 | 5 | B.1.425 | 0.01497 |
N | 80 | P80R | cCa | cGa | 5 | 5 | B.1.596 | 0.000436 |
N | 80 | P80A | Cca | Gca | 5 | 5 | B.1.617.2 | 0.000019 |
N | 80 | P80S | Cca | Tca | 4 | 4 | A.2 | 0.002647 |
N | 80 | P80V | CCa | GTa | 4 | 4 | All | 0.000001 |
N | 80 | P80L | cCa | cTa | 4 | 4 | AY.103 | 0.000025 |
N | 80 | P80P | ccA | ccG | 2 | 4 | AY.103 | 0.000012 |
N | 80 | P80P | ccA | ccT | 1 | 4 | AY.103 | 0.000006 |
N | 80 | P80P | ccA | ccC | 1 | 4 | AY.103 | 0.000006 |
N | 80 | P80S | Cca | Tca | 4 | 4 | AY.26 | 0.000113 |
N | 80 | P80L | cCa | cTa | 4 | 4 | AY.4.2 | 0.000087 |
N | 80 | P80S | Cca | Tca | 4 | 4 | AY.5 | 0.000083 |
N | 80 | P80T | Cca | Aca | 4 | 4 | AY.54 | 0.000381 |
N | 80 | P80R | cCa | cGa | 4 | 4 | B | 0.000511 |
N | 80 | P80S | Cca | Tca | 4 | 4 | B.1.1.519 | 0.000159 |
N | 80 | P80R | cCa | cGa | 4 | 4 | B.1.1.523 | 0.00625 |
N | 80 | P80L | cCa | cTa | 4 | 4 | B.1.351 | 0.000119 |
N | 80 | P80P | ccA | ccT | 4 | 4 | B.1.427 | 0.000202 |
N | 80 | P80R | cCa | cGa | 4 | 4 | B.1.526 | 0.000094 |
N | 80 | P80L | cCa | cTa | 4 | 4 | B.1.526 | 0.000094 |
N | 80 | P80Q | cCa | cAa | 4 | 4 | B.1.575 | 0.001214 |
N | 80 | P80R | cCa | cGa | 4 | 4 | B.1.621 | 0.000354 |
N | 80 | P80R | cCa | cGa | 4 | 4 | C.37.1 | 0.010471 |
N | 80 | P80L | cCa | cTa | 4 | 4 | P.1 | 0.000063 |
N | 80 | P80S | Cca | Tca | 3 | 3 | A.2.5 | 0.001497 |
N | 80 | P80del2 | CCa | --a | 3 | 3 | All | 0.000001 |
N | 80 | P80P | ccA | ccG | 3 | 3 | AY.102 | 0.00008 |
N | 80 | P80Q | cCa | cAa | 3 | 3 | AY.102 | 0.00008 |
N | 80 | P80T | Cca | Aca | 3 | 3 | AY.25 | 0.000018 |
N | 80 | P80T | Cca | Aca | 3 | 3 | AY.3 | 0.00003 |
N | 80 | P80P | ccA | ccG | 3 | 3 | AY.34 | 0.000291 |
N | 80 | P80S | Cca | Tca | 3 | 3 | AY.39 | 0.000074 |
N | 80 | P80S | Cca | Tca | 3 | 3 | AY.46 | 0.000312 |
N | 80 | P80P | ccA | ccG | 3 | 3 | AY.46.4 | 0.000494 |
N | 80 | P80S | Cca | Tca | 3 | 3 | AY.9 | 0.000203 |
N | 80 | P80Q | cCa | cAa | 3 | 3 | B.1 | 0.000027 |
N | 80 | P80R | cCa | cGa | 3 | 3 | B.1.1.161 | 0.010601 |
N | 80 | P80R | cCa | cGa | 3 | 3 | B.1.1.220 | 0.005576 |
N | 80 | P80S | Cca | Tca | 3 | 3 | B.1.1.241 | 0.006211 |
N | 80 | P80R | cCa | cGa | 3 | 3 | B.1.1.372 | 0.002066 |
N | 80 | P80R | cCa | cGa | 3 | 3 | B.1.1.507 | 0.026087 |
N | 80 | P80del | CCA | --- | 3 | 3 | B.1.1.7 | 0.000003 |
N | 80 | P80P | ccA | ccG | 3 | 3 | B.1.177 | 0.00004 |
N | 80 | P80Q | cCa | cAa | 3 | 3 | B.1.177 | 0.00004 |
N | 80 | P80P | ccA | ccG | 3 | 3 | B.1.177.21 | 0.000229 |
N | 80 | P80L | cCa | cTa | 3 | 3 | B.1.177.32 | 0.004049 |
N | 80 | P80L | cCa | cTa | 3 | 3 | B.1.177.4 | 0.000633 |
N | 80 | P80Q | cCa | cAa | 3 | 3 | B.1.2 | 0.000026 |
N | 80 | P80R | cCa | cGa | 3 | 3 | B.1.221 | 0.000213 |
N | 80 | P80S | Cca | Tca | 3 | 3 | B.1.221 | 0.000213 |
N | 80 | P80R | cCa | cGa | 3 | 3 | B.1.234 | 0.000396 |
N | 80 | P80S | Cca | Tca | 3 | 3 | B.1.243 | 0.000209 |
N | 80 | P80P | ccA | ccC | 3 | 3 | B.1.36.1 | 0.003421 |
N | 80 | P80P | ccA | ccG | 3 | 3 | B.1.422 | 0.002437 |
N | 80 | P80L | cCa | cTa | 3 | 3 | B.1.564 | 0.001278 |
N | 80 | P80S | Cca | Tca | 3 | 3 | B.1.595.3 | 0.078947 |
N | 80 | P80S | Cca | Tca | 3 | 3 | B.1.596 | 0.000261 |
N | 80 | P80L | cCa | cTa | 3 | 3 | B.1.596 | 0.000261 |
N | 80 | P80T | Cca | Aca | 3 | 3 | B.1.617.2 | 0.000011 |
N | 80 | P80R | cCa | cGa | 3 | 3 | C.36.3.1 | 0.008152 |
N | 80 | P80R | cCa | cGa | 3 | 3 | P.2 | 0.00056 |
N | 80 | P80S | Cca | Tca | 3 | 3 | Q.1 | 0.000379 |
N | 80 | P80del1 | CCa | -Ta | 2 | 2 | 0.111111 | |
N | 80 | P80T | Cca | Aca | 2 | 2 | 0.111111 | |
N | 80 | P80V | CCa | GTa | 2 | 2 | 0.111111 | |
N | 80 | P80del2 | CCa | --a | 2 | 2 | 0.111111 | |
N | 80 | P80X | CCA | TAG | 1 | 2 | All | 0 |
N | 80 | P80X | CCa | TAa | 1 | 2 | All | 0 |
N | 80 | P80S | Cca | Tca | 2 | 2 | AY.100 | 0.000092 |
N | 80 | P80R | cCa | cGa | 2 | 2 | AY.101 | 0.000981 |
N | 80 | P80R | cCa | cGa | 2 | 2 | AY.102 | 0.000053 |
N | 80 | P80S | Cca | Tca | 2 | 2 | AY.110 | 0.000225 |
N | 80 | P80L | cCa | cTa | 2 | 2 | AY.111 | 0.000366 |
N | 80 | P80Q | cCa | cAa | 2 | 2 | AY.114 | 0.000462 |
N | 80 | P80S | Cca | Tca | 2 | 2 | AY.118 | 0.000125 |
N | 80 | P80Q | cCa | cAa | 2 | 2 | AY.119 | 0.000071 |
N | 80 | P80L | cCa | cTa | 2 | 2 | AY.120 | 0.000074 |
N | 80 | P80S | Cca | Tca | 2 | 2 | AY.120.2.1 | 0.000997 |
N | 80 | P80P | ccA | ccT | 2 | 2 | AY.16.1 | 0.00094 |
N | 80 | P80R | cCa | cGa | 2 | 2 | AY.20 | 0.000078 |
N | 80 | P80R | cCa | cGa | 2 | 2 | AY.23 | 0.000139 |
N | 80 | P80P | ccA | ccG | 1 | 2 | AY.26 | 0.000028 |
N | 80 | P80P | ccA | ccT | 1 | 2 | AY.26 | 0.000028 |
N | 80 | P80L | cCa | cTa | 2 | 2 | AY.3 | 0.00002 |
N | 80 | P80P | ccA | ccT | 1 | 2 | AY.3 | 0.00001 |
N | 80 | P80P | ccA | ccG | 1 | 2 | AY.3 | 0.00001 |
N | 80 | P80L | cCa | cTa | 2 | 2 | AY.39 | 0.000049 |
N | 80 | P80P | ccA | ccG | 2 | 2 | AY.39 | 0.000049 |
N | 80 | P80Q | cCa | cAa | 2 | 2 | AY.4.5 | 0.000215 |
N | 80 | P80Q | cCa | cAa | 2 | 2 | AY.42 | 0.00008 |
N | 80 | P80T | Cca | Aca | 2 | 2 | AY.44 | 0.000012 |
N | 80 | P80Q | cCa | cAa | 2 | 2 | AY.46 | 0.000208 |
N | 80 | P80Q | cCa | cAa | 2 | 2 | AY.46.6 | 0.000144 |
N | 80 | P80Q | cCa | cAa | 2 | 2 | AY.48 | 0.00093 |
N | 80 | P80R | cCa | cGa | 2 | 2 | AY.63 | 0.000774 |
N | 80 | P80L | cCa | cTa | 2 | 2 | AY.65 | 0.001066 |
N | 80 | P80T | Cca | Aca | 2 | 2 | AY.73 | 0.001331 |
N | 80 | P80L | cCa | cTa | 2 | 2 | AY.9.2 | 0.000073 |
N | 80 | P80R | cCa | cGa | 2 | 2 | AY.9.2 | 0.000073 |
N | 80 | P80R | cCa | cGa | 2 | 2 | AZ.1 | 0.001735 |
N | 80 | P80T | Cca | Aca | 2 | 2 | B | 0.000256 |
N | 80 | P80L | cCa | cTa | 2 | 2 | B.1.1.1 | 0.000653 |
N | 80 | P80R | cCa | cGa | 2 | 2 | B.1.1.117 | 0.019417 |
N | 80 | P80A | Cca | Gca | 2 | 2 | B.1.1.348 | 0.001592 |
N | 80 | P80R | cCa | cGa | 2 | 2 | B.1.1.348 | 0.001592 |
N | 80 | P80L | cCa | cTa | 2 | 2 | B.1.1.37 | 0.000386 |
N | 80 | P80R | cCa | cGa | 2 | 2 | B.1.1.409 | 0.005666 |
N | 80 | P80S | Cca | Tca | 2 | 2 | B.1.1.464 | 0.002946 |
N | 80 | P80Q | cCa | cAa | 2 | 2 | B.1.1.519 | 0.000079 |
N | 80 | P80V | CCa | GTa | 2 | 2 | B.1.1.7 | 0.000002 |
N | 80 | P80L | cCa | cTa | 2 | 2 | B.1.139 | 0.001466 |
N | 80 | P80T | Cca | Aca | 2 | 2 | B.1.177 | 0.000026 |
N | 80 | P80S | Cca | Tca | 2 | 2 | B.1.177.2 | 0.009091 |
N | 80 | P80L | cCa | cTa | 2 | 2 | B.1.177.62 | 0.002384 |
N | 80 | P80R | cCa | cGa | 2 | 2 | B.1.177.7 | 0.00033 |
N | 80 | P80R | cCa | cGa | 2 | 2 | B.1.177.73 | 0.001133 |
N | 80 | P80R | cCa | cGa | 2 | 2 | B.1.2 | 0.000018 |
N | 80 | P80P | ccA | ccG | 1 | 2 | B.1.2 | 0.000009 |
N | 80 | P80P | ccA | ccC | 1 | 2 | B.1.2 | 0.000009 |
N | 80 | P80L | cCa | cTa | 2 | 2 | B.1.234 | 0.000264 |
N | 80 | P80S | Cca | Tca | 2 | 2 | B.1.240 | 0.000431 |
N | 80 | P80R | cCa | cGa | 2 | 2 | B.1.241 | 0.001623 |
N | 80 | P80L | cCa | cTa | 2 | 2 | B.1.258.17 | 0.000208 |
N | 80 | P80R | cCa | cGa | 2 | 2 | B.1.311 | 0.000549 |
N | 80 | P80R | cCa | cGa | 2 | 2 | B.1.324 | 0.00321 |
N | 80 | P80P | ccA | ccT | 2 | 2 | B.1.36.29 | 0.001035 |
N | 80 | P80R | cCa | cGa | 2 | 2 | B.1.369 | 0.00057 |
N | 80 | P80R | cCa | cGa | 2 | 2 | B.1.524 | 0.002813 |
N | 80 | P80S | Cca | Tca | 2 | 2 | B.1.526 | 0.000047 |
N | 80 | P80R | cCa | cGa | 2 | 2 | B.1.533 | 0.019231 |
N | 80 | P80Q | cCa | cAa | 2 | 2 | B.1.561 | 0.000794 |
N | 80 | P80R | cCa | cGa | 2 | 2 | B.1.623 | 0.001073 |
N | 80 | P80S | Cca | Tca | 2 | 2 | C.38 | 0.016129 |
N | 80 | P80S | Cca | Tca | 2 | 2 | D.2 | 0.00015 |
N | 80 | P80L | cCa | cTa | 2 | 2 | D.2 | 0.00015 |
N | 80 | P80P | ccA | ccG | 1 | 1 | A.1 | 0.000282 |
N | 80 | P80L | cCa | cTa | 1 | 1 | A.2.5 | 0.000499 |
N | 80 | P80L | cCa | cTa | 1 | 1 | A.23.1 | 0.000704 |
N | 80 | P80L | cCa | cTa | 1 | 1 | AA.3 | 0.027027 |
N | 80 | P80L | cCa | cTa | 1 | 1 | AU.3 | 0.00211 |
N | 80 | P80L | cCa | cTa | 1 | 1 | AY.100 | 0.000046 |
N | 80 | P80R | cCa | cGa | 1 | 1 | AY.108 | 0.001103 |
N | 80 | P80Q | cCa | cAa | 1 | 1 | AY.109 | 0.00074 |
N | 80 | P80L | cCa | cTa | 1 | 1 | AY.11 | 0.001339 |
N | 80 | P80Q | cCa | cAa | 1 | 1 | AY.11 | 0.001339 |
N | 80 | P80P | ccA | ccG | 1 | 1 | AY.110 | 0.000113 |
N | 80 | P80S | Cca | Tca | 1 | 1 | AY.111 | 0.000183 |
N | 80 | P80Q | cCa | cAa | 1 | 1 | AY.117 | 0.000085 |
N | 80 | P80P | ccA | ccG | 1 | 1 | AY.117 | 0.000085 |
N | 80 | P80Q | cCa | cAa | 1 | 1 | AY.118 | 0.000063 |
N | 80 | P80L | cCa | cTa | 1 | 1 | AY.119 | 0.000035 |
N | 80 | P80S | Cca | Tca | 1 | 1 | AY.120.1 | 0.000321 |
N | 80 | P80R | cCa | cGa | 1 | 1 | AY.120.2 | 0.001285 |
N | 80 | P80S | Cca | Tca | 1 | 1 | AY.121 | 0.000135 |
N | 80 | P80T | Cca | Aca | 1 | 1 | AY.121 | 0.000135 |
N | 80 | P80R | cCa | cGa | 1 | 1 | AY.13 | 0.000161 |
N | 80 | P80S | Cca | Tca | 1 | 1 | AY.13 | 0.000161 |
N | 80 | P80L | cCa | cTa | 1 | 1 | AY.14 | 0.000088 |
N | 80 | P80R | cCa | cGa | 1 | 1 | AY.16.1 | 0.00047 |
N | 80 | P80S | Cca | Tca | 1 | 1 | AY.17 | 0.008197 |
N | 80 | P80R | cCa | cGa | 1 | 1 | AY.2 | 0.000356 |
N | 80 | P80L | cCa | cTa | 1 | 1 | AY.20 | 0.000039 |
N | 80 | P80Q | cCa | cAa | 1 | 1 | AY.20 | 0.000039 |
N | 80 | P80P | ccA | ccC | 1 | 1 | AY.23 | 0.00007 |
N | 80 | P80S | Cca | Tca | 1 | 1 | AY.23.1 | 0.000417 |
N | 80 | P80R | cCa | cGa | 1 | 1 | AY.25 | 0.000006 |
N | 80 | P80L | cCa | cTa | 1 | 1 | AY.26 | 0.000028 |
N | 80 | P80Q | cCa | cAa | 1 | 1 | AY.27 | 0.000065 |
N | 80 | P80P | ccA | ccC | 1 | 1 | AY.29 | 0.000016 |
N | 80 | P80L | cCa | cTa | 1 | 1 | AY.29.1 | 0.000221 |
N | 80 | P80del | CCA | --- | 1 | 1 | AY.3 | 0.00001 |
N | 80 | P80L | cCa | cTa | 1 | 1 | AY.3.1 | 0.000085 |
N | 80 | P80L | cCa | cTa | 1 | 1 | AY.34 | 0.000097 |
N | 80 | P80R | cCa | cGa | 1 | 1 | AY.35 | 0.000233 |
N | 80 | P80Q | cCa | cAa | 1 | 1 | AY.37 | 0.000316 |
N | 80 | P80T | Cca | Aca | 1 | 1 | AY.37 | 0.000316 |
N | 80 | P80A | Cca | Gca | 1 | 1 | AY.39 | 0.000025 |
N | 80 | P80Q | cCa | cAa | 1 | 1 | AY.39 | 0.000025 |
N | 80 | P80R | cCa | cGa | 1 | 1 | AY.39 | 0.000025 |
N | 80 | P80Q | cCa | cAa | 1 | 1 | AY.39.1 | 0.00004 |
N | 80 | P80R | cCa | cGa | 1 | 1 | AY.39.1 | 0.00004 |
N | 80 | P80P | ccA | ccT | 1 | 1 | AY.39.1 | 0.00004 |
N | 80 | P80R | cCa | cGa | 1 | 1 | AY.4 | 0.000002 |
N | 80 | P80Q | cCa | cAa | 1 | 1 | AY.4.2.1 | 0.000149 |
N | 80 | P80S | Cca | Tca | 1 | 1 | AY.4.5 | 0.000107 |
N | 80 | P80R | cCa | cGa | 1 | 1 | AY.4.5 | 0.000107 |
N | 80 | P80Q | cCa | cAa | 1 | 1 | AY.41 | 0.000294 |
N | 80 | P80L | cCa | cTa | 1 | 1 | AY.41 | 0.000294 |
N | 80 | P80T | Cca | Aca | 1 | 1 | AY.43 | 0.000004 |
N | 80 | P80P | ccA | ccC | 1 | 1 | AY.43 | 0.000004 |
N | 80 | P80A | Cca | Gca | 1 | 1 | AY.44 | 0.000006 |
N | 80 | P80del1 | ccA | cc- | 1 | 1 | AY.44 | 0.000006 |
N | 80 | P80Q | cCa | cAa | 1 | 1 | AY.45 | 0.000122 |
N | 80 | P80S | Cca | Tca | 1 | 1 | AY.45 | 0.000122 |
N | 80 | P80P | ccA | ccG | 1 | 1 | AY.45 | 0.000122 |
N | 80 | P80P | ccA | ccG | 1 | 1 | AY.46 | 0.000104 |
N | 80 | P80R | cCa | cGa | 1 | 1 | AY.47 | 0.000031 |
N | 80 | P80Q | cCa | cAa | 1 | 1 | AY.47 | 0.000031 |
N | 80 | P80L | cCa | cTa | 1 | 1 | AY.47 | 0.000031 |
N | 80 | P80S | CcA | TcC | 1 | 1 | AY.48 | 0.000465 |
N | 80 | P80R | cCa | cGa | 1 | 1 | AY.5 | 0.000021 |
N | 80 | P80Q | cCa | cAa | 1 | 1 | AY.54 | 0.000095 |
N | 80 | P80Q | cCa | cAa | 1 | 1 | AY.56 | 0.001605 |
N | 80 | P80Q | cCa | cAa | 1 | 1 | AY.57 | 0.000656 |
N | 80 | P80Q | cCa | cAa | 1 | 1 | AY.6 | 0.000041 |
N | 80 | P80P | ccA | ccG | 1 | 1 | AY.6 | 0.000041 |
N | 80 | P80L | cCa | cTa | 1 | 1 | AY.6 | 0.000041 |
N | 80 | P80S | Cca | Tca | 1 | 1 | AY.61 | 0.000105 |
N | 80 | P80R | cCa | cGa | 1 | 1 | AY.61 | 0.000105 |
N | 80 | P80R | cCa | cGa | 1 | 1 | AY.62 | 0.000436 |
N | 80 | P80S | Cca | Tca | 1 | 1 | AY.62 | 0.000436 |
N | 80 | P80S | Cca | Tca | 1 | 1 | AY.63 | 0.000387 |
N | 80 | P80del | CCA | --- | 1 | 1 | AY.67 | 0.000464 |
N | 80 | P80L | cCa | cTa | 1 | 1 | AY.67 | 0.000464 |
N | 80 | P80T | Cca | Aca | 1 | 1 | AY.7.1 | 0.000113 |
N | 80 | P80S | Cca | Tca | 1 | 1 | AY.75 | 0.000056 |
N | 80 | P80S | Cca | Tca | 1 | 1 | AY.75.1 | 0.00018 |
N | 80 | P80R | cCa | cGa | 1 | 1 | AY.75.1 | 0.00018 |
N | 80 | P80Q | cCa | cAa | 1 | 1 | AY.84 | 0.000437 |
N | 80 | P80T | Cca | Aca | 1 | 1 | AY.85 | 0.000427 |
N | 80 | P80T | Cca | Aca | 1 | 1 | AY.86 | 0.00083 |
N | 80 | P80P | ccA | ccG | 1 | 1 | AY.9.1 | 0.000084 |
N | 80 | P80del | CCA | --- | 1 | 1 | AY.9.2 | 0.000037 |
N | 80 | P80S | Cca | Tca | 1 | 1 | AY.9.2 | 0.000037 |
N | 80 | P80S | Cca | Tca | 1 | 1 | AY.92 | 0.000287 |
N | 80 | P80Q | cCa | cAa | 1 | 1 | AY.98 | 0.000079 |
N | 80 | P80P | ccA | ccG | 1 | 1 | AY.98 | 0.000079 |
N | 80 | P80S | Cca | Tca | 1 | 1 | AY.98 | 0.000079 |
N | 80 | P80L | cCa | cTa | 1 | 1 | AY.98.1 | 0.000048 |
N | 80 | P80R | cCa | cGa | 1 | 1 | AY.99.2 | 0.000092 |
N | 80 | P80S | Cca | Tca | 1 | 1 | B | 0.000128 |
N | 80 | P80del1 | ccA | cc- | 1 | 1 | B.1 | 0.000009 |
N | 80 | P80X | CCA | TAG | 1 | 1 | B.1 | 0.000009 |
N | 80 | P80del | CCA | --- | 1 | 1 | B.1 | 0.000009 |
N | 80 | P80del | CCA | --- | 1 | 1 | B.1.1 | 0.000018 |
N | 80 | P80X | CCa | TAa | 1 | 1 | B.1.1 | 0.000018 |
N | 80 | P80S | Cca | Tca | 1 | 1 | B.1.1.113 | 0.006993 |
N | 80 | P80R | cCa | cGa | 1 | 1 | B.1.1.121 | 0.002427 |
N | 80 | P80S | Cca | Tca | 1 | 1 | B.1.1.15 | 0.013514 |
N | 80 | P80P | ccA | ccG | 1 | 1 | B.1.1.174 | 0.003378 |
N | 80 | P80T | Cca | Aca | 1 | 1 | B.1.1.189 | 0.001513 |
N | 80 | P80R | cCa | cGa | 1 | 1 | B.1.1.198 | 0.001468 |
N | 80 | P80S | Cca | Tca | 1 | 1 | B.1.1.222 | 0.000204 |
N | 80 | P80L | cCa | cTa | 1 | 1 | B.1.1.232 | 0.001815 |
N | 80 | P80R | cCa | cGa | 1 | 1 | B.1.1.236 | 0.006897 |
N | 80 | P80Q | cCa | cAa | 1 | 1 | B.1.1.255 | 0.00303 |
N | 80 | P80R | cCa | cGa | 1 | 1 | B.1.1.265 | 0.003155 |
N | 80 | P80L | cCa | cTa | 1 | 1 | B.1.1.284 | 0.000107 |
N | 80 | P80S | Cca | Tca | 1 | 1 | B.1.1.286 | 0.002899 |
N | 80 | P80R | cCa | cGa | 1 | 1 | B.1.1.294 | 0.001266 |
N | 80 | P80S | Cca | Tca | 1 | 1 | B.1.1.298 | 0.000862 |
N | 80 | P80R | cCa | cGa | 1 | 1 | B.1.1.306 | 0.000438 |
N | 80 | P80T | Cca | Aca | 1 | 1 | B.1.1.326 | 0.001761 |
N | 80 | P80R | cCa | cGa | 1 | 1 | B.1.1.33 | 0.000421 |
N | 80 | P80S | Cca | Tca | 1 | 1 | B.1.1.33 | 0.000421 |
N | 80 | P80T | Cca | Aca | 1 | 1 | B.1.1.377 | 0.001381 |
N | 80 | P80Q | cCa | cAa | 1 | 1 | B.1.1.420 | 0.001006 |
N | 80 | P80S | Cca | Tca | 1 | 1 | B.1.1.434 | 0.000349 |
N | 80 | P80L | cCa | cTa | 1 | 1 | B.1.1.486 | 0.001577 |
N | 80 | P80P | ccA | ccT | 1 | 1 | B.1.1.519 | 0.00004 |
N | 80 | P80R | cCa | cGa | 1 | 1 | B.1.1.54 | 0.003021 |
N | 80 | P80S | Cca | Tca | 1 | 1 | B.1.1.56 | 0.017857 |
N | 80 | P80del1 | Cca | -ca | 1 | 1 | B.1.1.7 | 0.000001 |
N | 80 | P80del2 | CCa | --a | 1 | 1 | B.1.1.7 | 0.000001 |
N | 80 | P80S | Cca | Tca | 1 | 1 | B.1.1.70 | 0.000341 |
N | 80 | P80R | cCa | cGa | 1 | 1 | B.1.1.99 | 0.02381 |
N | 80 | P80R | cCa | cGa | 1 | 1 | B.1.111 | 0.001175 |
N | 80 | P80P | ccA | ccG | 1 | 1 | B.1.158 | 0.02381 |
N | 80 | P80Q | cCa | cAa | 1 | 1 | B.1.160 | 0.000031 |
N | 80 | P80S | Cca | Tca | 1 | 1 | B.1.160 | 0.000031 |
N | 80 | P80L | cCa | cTa | 1 | 1 | B.1.160.22 | 0.006757 |
N | 80 | P80S | Cca | Tca | 1 | 1 | B.1.160.28 | 0.002924 |
N | 80 | P80L | cCa | cTa | 1 | 1 | B.1.160.32 | 0.004292 |
N | 80 | P80R | cCa | cGa | 1 | 1 | B.1.170 | 0.00431 |
N | 80 | P80Q | cCa | cAa | 1 | 1 | B.1.177.10 | 0.000878 |
N | 80 | P80L | cCa | cTa | 1 | 1 | B.1.177.21 | 0.000076 |
N | 80 | P80R | cCa | cGa | 1 | 1 | B.1.177.42 | 0.000894 |
N | 80 | P80L | cCa | cTa | 1 | 1 | B.1.177.6 | 0.000977 |
N | 80 | P80del | CCA | --- | 1 | 1 | B.1.177.63 | 0.002703 |
N | 80 | P80S | Cca | Tca | 1 | 1 | B.1.177.7 | 0.000165 |
N | 80 | P80L | cCa | cTa | 1 | 1 | B.1.177.79 | 0.002342 |
N | 80 | P80L | cCa | cTa | 1 | 1 | B.1.177.8 | 0.000752 |
N | 80 | P80S | Cca | Tca | 1 | 1 | B.1.177.81 | 0.000189 |
N | 80 | P80R | cCa | cGa | 1 | 1 | B.1.179 | 0.003759 |
N | 80 | P80del1 | Cca | -ca | 1 | 1 | B.1.2 | 0.000009 |
N | 80 | P80R | cCa | cGa | 1 | 1 | B.1.214 | 0.003663 |
N | 80 | P80S | Cca | Tca | 1 | 1 | B.1.223 | 0.002778 |
N | 80 | P80R | cCa | cGa | 1 | 1 | B.1.236 | 0.002053 |
N | 80 | P80S | Cca | Tca | 1 | 1 | B.1.241 | 0.000812 |
N | 80 | P80L | cCa | cTa | 1 | 1 | B.1.258 | 0.000067 |
N | 80 | P80L | cCa | cTa | 1 | 1 | B.1.258.11 | 0.000396 |
N | 80 | P80L | cCa | cTa | 1 | 1 | B.1.258.14 | 0.00098 |
N | 80 | P80S | Cca | Tca | 1 | 1 | B.1.258.14 | 0.00098 |
N | 80 | P80S | Cca | Tca | 1 | 1 | B.1.258.17 | 0.000104 |
N | 80 | P80L | cCa | cTa | 1 | 1 | B.1.258.22 | 0.002667 |
N | 80 | P80L | cCa | cTa | 1 | 1 | B.1.258.6 | 0.019608 |
N | 80 | P80P | ccA | ccG | 1 | 1 | B.1.280 | 0.007143 |
N | 80 | P80S | Cca | Tca | 1 | 1 | B.1.311 | 0.000275 |
N | 80 | P80Q | cCa | cAa | 1 | 1 | B.1.351 | 0.00003 |
N | 80 | P80L | cCa | cTa | 1 | 1 | B.1.351.5 | 0.0006 |
N | 80 | P80S | Cca | Tca | 1 | 1 | B.1.351.5 | 0.0006 |
N | 80 | P80P | ccA | ccG | 1 | 1 | B.1.36 | 0.000146 |
N | 80 | P80R | cCa | cGa | 1 | 1 | B.1.36 | 0.000146 |
N | 80 | P80A | Cca | Gca | 1 | 1 | B.1.36.16 | 0.001425 |
N | 80 | P80P | ccA | ccG | 1 | 1 | B.1.36.17 | 0.000494 |
N | 80 | P80L | cCa | cTa | 1 | 1 | B.1.36.29 | 0.000517 |
N | 80 | P80L | cCa | cTa | 1 | 1 | B.1.36.39 | 0.002217 |
N | 80 | P80S | Cca | Tca | 1 | 1 | B.1.367 | 0.000792 |
N | 80 | P80R | cCa | cGa | 1 | 1 | B.1.367 | 0.000792 |
N | 80 | P80P | ccA | ccT | 1 | 1 | B.1.375 | 0.00082 |
N | 80 | P80L | cCa | cTa | 1 | 1 | B.1.389 | 0.001002 |
N | 80 | P80S | Cca | Tca | 1 | 1 | B.1.400 | 0.000429 |
N | 80 | P80L | cCa | cTa | 1 | 1 | B.1.408 | 0.00369 |
N | 80 | P80R | cCa | cGa | 1 | 1 | B.1.415 | 0.014286 |
N | 80 | P80del | CCA | --- | 1 | 1 | B.1.415 | 0.014286 |
N | 80 | P80del | CCA | --- | 1 | 1 | B.1.427 | 0.00005 |
N | 80 | P80L | cCa | cTa | 1 | 1 | B.1.428 | 0.00102 |
N | 80 | P80L | cCa | cTa | 1 | 1 | B.1.433 | 0.003195 |
N | 80 | P80del | CCA | --- | 1 | 1 | B.1.439 | 0.005917 |
N | 80 | P80S | Cca | Tca | 1 | 1 | B.1.466.2 | 0.000391 |
N | 80 | P80L | cCa | cTa | 1 | 1 | B.1.466.2 | 0.000391 |
N | 80 | P80T | Cca | Aca | 1 | 1 | B.1.466.2 | 0.000391 |
N | 80 | P80R | cCa | cGa | 1 | 1 | B.1.497 | 0.000315 |
N | 80 | P80T | Cca | Aca | 1 | 1 | B.1.517 | 0.000427 |
N | 80 | P80L | cCa | cTa | 1 | 1 | B.1.524 | 0.001406 |
N | 80 | P80L | cCa | cTa | 1 | 1 | B.1.525 | 0.000113 |
N | 80 | P80P | ccA | ccT | 1 | 1 | B.1.525 | 0.000113 |
N | 80 | P80T | Cca | Aca | 1 | 1 | B.1.526 | 0.000024 |
N | 80 | P80T | Cca | Aca | 1 | 1 | B.1.561 | 0.000397 |
N | 80 | P80R | cCa | cGa | 1 | 1 | B.1.575 | 0.000303 |
N | 80 | P80S | Cca | Tca | 1 | 1 | B.1.575 | 0.000303 |
N | 80 | P80L | cCa | cTa | 1 | 1 | B.1.576 | 0.000907 |
N | 80 | P80S | Cca | Tca | 1 | 1 | B.1.582 | 0.000491 |
N | 80 | P80Q | cCa | cAa | 1 | 1 | B.1.597 | 0.00463 |
N | 80 | P80Q | cCa | cAa | 1 | 1 | B.1.602 | 0.006536 |
N | 80 | P80L | cCa | cTa | 1 | 1 | B.1.609 | 0.000479 |
N | 80 | P80R | cCa | cGa | 1 | 1 | B.1.609 | 0.000479 |
N | 80 | P80L | cCa | cTa | 1 | 1 | B.1.619 | 0.000871 |
N | 80 | P80R | cCa | cGa | 1 | 1 | B.1.620 | 0.000946 |
N | 80 | P80L | cCa | cTa | 1 | 1 | B.1.621 | 0.000089 |
N | 80 | P80Q | cCa | cAa | 1 | 1 | B.1.621 | 0.000089 |
N | 80 | P80L | cCa | cTa | 1 | 1 | B.1.628 | 0.000352 |
N | 80 | P80R | cCa | cGa | 1 | 1 | B.1.636 | 0.006711 |
N | 80 | P80R | cCa | cGa | 1 | 1 | B.1.637 | 0.000073 |
N | 80 | P80L | cCa | cTa | 1 | 1 | B.1.637 | 0.000073 |
N | 80 | P80L | cCa | cTa | 1 | 1 | B.3 | 0.000831 |
N | 80 | P80L | cCa | cTa | 1 | 1 | B.35 | 0.007812 |
N | 80 | P80S | Cca | Tca | 1 | 1 | B.39 | 0.002331 |
N | 80 | P80L | cCa | cTa | 1 | 1 | B.6.6 | 0.000889 |
N | 80 | P80S | Cca | Tca | 1 | 1 | B.6.6 | 0.000889 |
N | 80 | P80R | cCa | cGa | 1 | 1 | C.13 | 0.025641 |
N | 80 | P80L | cCa | cTa | 1 | 1 | C.30 | 0.001727 |
N | 80 | P80L | cCa | cTa | 1 | 1 | C.37 | 0.000116 |
N | 80 | P80R | cCa | cGa | 1 | 1 | D.2 | 0.000075 |
N | 80 | P80P | ccA | ccG | 1 | 1 | D.2 | 0.000075 |
N | 80 | P80del | CCA | --- | 1 | 1 | P.1 | 0.000016 |
N | 80 | P80Q | cCa | cAa | 1 | 1 | P.1.12 | 0.000484 |
N | 80 | P80L | cCa | cTa | 1 | 1 | P.1.17 | 0.000162 |
N | 80 | P80L | cCa | cTa | 1 | 1 | P.1.7 | 0.000319 |
N | 80 | P80S | Cca | Tca | 1 | 1 | P.2 | 0.000187 |
N | 80 | P80R | cCa | cGa | 1 | 1 | P.4 | 0.003802 |
N | 80 | P80R | cCa | cGa | 1 | 1 | P.7 | 0.004367 |
N | 80 | P80R | cCa | cGa | 1 | 1 | Q.1 | 0.000126 |
N | 80 | P80S | Cca | Tca | 1 | 1 | Q.8 | 0.000165 |
N | 80 | P80R | cCa | cGa | 1 | 1 | Q.8 | 0.000165 |
N | 80 | P80S | Cca | Tca | 1 | 1 | R.1 | 0.00009 |
N | 80 | P80L | cCa | cTa | 1 | 1 | R.1 | 0.00009 |
N | 80 | P80L | cCa | cTa | 1 | 1 | W.3 | 0.005263 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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