CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 8 | N8D | nonsyn | Aat | Gat | 5276 | 5272 | 0.999242 | 28295-28297 | |
N | 8 | N8D | nonsyn | AaT | GaC | 5276 | 4 | 0.00075815 | 28295-28297 | |
N | 8 | N8N | syn | aaT | aaC | 2798 | 2798 | 1 | 28295-28297 | |
N | 8 | N8S | nonsyn | aAt | aGt | 906 | 906 | 1 | 28295-28297 | |
N | 8 | N8Y | nonsyn | Aat | Tat | 901 | 901 | 1 | 28295-28297 | |
N | 8 | N8H | nonsyn | Aat | Cat | 589 | 589 | 1 | 28295-28297 | |
N | 8 | N8K | nonsyn | aaT | aaA | 264 | 230 | 0.871212 | 28295-28297 | |
N | 8 | N8K | nonsyn | aaT | aaG | 264 | 34 | 0.128788 | 28295-28297 | |
N | 8 | N8I | nonsyn | aAt | aTt | 235 | 235 | 1 | 28295-28297 | |
N | 8 | N8T | nonsyn | aAt | aCt | 235 | 233 | 0.991489 | 28295-28297 | |
N | 8 | N8T | nonsyn | aAT | aCC | 235 | 2 | 0.00851064 | 28295-28297 | |
N | 8 | N8del | del | AAT | --- | 32 | 32 | 1 | 28295-28297 | |
N | 8 | N8Q | nonsyn | AaT | CaA | 6 | 6 | 1 | 28295-28297 | |
N | 8 | N8C | nonsyn | AAt | TGt | 5 | 5 | 1 | 28295-28297 | |
N | 8 | N8R | nonsyn | AAt | CGt | 2 | 1 | 0.5 | 28295-28297 | |
N | 8 | N8G | nonsyn | AAT | GGC | 2 | 1 | 0.5 | 28295-28297 | |
N | 8 | N8R | nonsyn | aAT | aGA | 2 | 1 | 0.5 | 28295-28297 | |
N | 8 | N8G | nonsyn | AAt | GGt | 2 | 1 | 0.5 | 28295-28297 | |
N | 8 | N8A | nonsyn | AAT | GCC | 1 | 1 | 1 | 28295-28297 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 8 | N8D | Aat | Gat | 5272 | 5276 | All | 0.001008 |
N | 8 | N8D | AaT | GaC | 4 | 5276 | All | 0.000001 |
N | 8 | N8D | Aat | Gat | 5104 | 5104 | B.1.1.7 | 0.004569 |
N | 8 | N8N | aaT | aaC | 2798 | 2798 | All | 0.000535 |
N | 8 | N8N | aaT | aaC | 971 | 971 | B.1.620 | 0.918638 |
N | 8 | N8S | aAt | aGt | 906 | 906 | All | 0.000173 |
N | 8 | N8Y | Aat | Tat | 901 | 901 | All | 0.000172 |
N | 8 | N8H | Aat | Cat | 589 | 589 | All | 0.000113 |
N | 8 | N8N | aaT | aaC | 560 | 560 | AY.40 | 0.540019 |
N | 8 | N8Y | Aat | Tat | 452 | 452 | B.1.36.25 | 0.997792 |
N | 8 | N8S | aAt | aGt | 300 | 300 | AY.7.1 | 0.03381 |
N | 8 | N8H | Aat | Cat | 278 | 278 | B.1.1.7 | 0.000249 |
N | 8 | N8K | aaT | aaA | 230 | 264 | All | 0.000044 |
N | 8 | N8K | aaT | aaG | 34 | 264 | All | 0.000007 |
N | 8 | N8I | aAt | aTt | 235 | 235 | All | 0.000045 |
N | 8 | N8T | aAt | aCt | 233 | 235 | All | 0.000045 |
N | 8 | N8T | aAT | aCC | 2 | 235 | All | 0 |
N | 8 | N8S | aAt | aGt | 204 | 204 | B.1.1.7 | 0.000183 |
N | 8 | N8K | aaT | aaA | 204 | 204 | B.1.526 | 0.004795 |
N | 8 | N8N | aaT | aaC | 171 | 171 | B.1.1.7 | 0.000153 |
N | 8 | N8N | aaT | aaC | 141 | 141 | AY.25 | 0.000848 |
N | 8 | N8N | aaT | aaC | 132 | 132 | AY.38 | 0.065901 |
N | 8 | N8H | Aat | Cat | 132 | 132 | AY.4 | 0.000205 |
N | 8 | N8T | aAt | aCt | 123 | 123 | B.1.1.294 | 0.155696 |
N | 8 | N8Y | Aat | Tat | 111 | 111 | B.1.636 | 0.744966 |
N | 8 | N8N | aaT | aaC | 107 | 107 | AY.4 | 0.000167 |
N | 8 | N8H | Aat | Cat | 100 | 100 | P.1 | 0.001575 |
N | 8 | N8Y | Aat | Tat | 90 | 90 | B.1.1.7 | 0.000081 |
N | 8 | N8I | aAt | aTt | 70 | 70 | B.1.2 | 0.000616 |
N | 8 | N8N | aaT | aaC | 62 | 62 | B.1 | 0.000568 |
N | 8 | N8S | aAt | aGt | 57 | 57 | AY.42 | 0.002293 |
N | 8 | N8N | aaT | aaC | 57 | 57 | AY.44 | 0.000347 |
N | 8 | N8Y | Aat | Tat | 49 | 49 | AY.25 | 0.000295 |
N | 8 | N8N | aaT | aaC | 45 | 45 | B.1.2 | 0.000396 |
N | 8 | N8I | aAt | aTt | 43 | 43 | B.1.396 | 0.030346 |
N | 8 | N8T | aAt | aCt | 43 | 43 | M.1 | 1 |
N | 8 | N8N | aaT | aaC | 41 | 41 | B.1.616 | 1 |
N | 8 | N8N | aaT | aaC | 39 | 39 | B.1.351.2 | 0.0118 |
N | 8 | N8D | Aat | Gat | 36 | 36 | B.1.177.4 | 0.007598 |
N | 8 | N8N | aaT | aaC | 36 | 36 | B.1.617.2 | 0.000136 |
N | 8 | N8D | Aat | Gat | 33 | 34 | AY.4 | 0.000051 |
N | 8 | N8D | AaT | GaC | 1 | 34 | AY.4 | 0.000002 |
N | 8 | N8del | AAT | --- | 32 | 32 | All | 0.000006 |
N | 8 | N8S | aAt | aGt | 31 | 31 | AY.4 | 0.000048 |
N | 8 | N8S | aAt | aGt | 31 | 31 | B.1.177 | 0.000408 |
N | 8 | N8Y | Aat | Tat | 28 | 28 | N.4 | 0.119149 |
N | 8 | N8T | aAt | aCt | 24 | 24 | B.1.1 | 0.000435 |
N | 8 | N8S | aAt | aGt | 24 | 24 | C.30 | 0.041451 |
N | 8 | N8S | aAt | aGt | 22 | 22 | AY.25 | 0.000132 |
N | 8 | N8N | aaT | aaC | 22 | 22 | B.1.576 | 0.019946 |
N | 8 | N8S | aAt | aGt | 22 | 22 | B.1.617.2 | 0.000083 |
N | 8 | N8N | aaT | aaC | 22 | 22 | C.37 | 0.002553 |
N | 8 | N8Y | Aat | Tat | 20 | 20 | B.1.2 | 0.000176 |
N | 8 | N8N | aaT | aaC | 19 | 19 | AY.103 | 0.000118 |
N | 8 | N8S | aAt | aGt | 19 | 19 | B.1.1 | 0.000345 |
N | 8 | N8Y | Aat | Tat | 18 | 18 | AY.4 | 0.000028 |
N | 8 | N8N | aaT | aaC | 18 | 18 | B.1.526 | 0.000423 |
N | 8 | N8N | aaT | aaC | 17 | 17 | AY.43 | 0.000075 |
N | 8 | N8Y | Aat | Tat | 17 | 17 | B.1.36 | 0.00248 |
N | 8 | N8S | aAt | aGt | 16 | 16 | A.27 | 0.02649 |
N | 8 | N8S | aAt | aGt | 16 | 16 | AY.3 | 0.000159 |
N | 8 | N8S | aAt | aGt | 16 | 16 | AY.44 | 0.000097 |
N | 8 | N8N | aaT | aaC | 15 | 15 | AY.29 | 0.000237 |
N | 8 | N8N | aaT | aaC | 14 | 14 | AY.75 | 0.000784 |
N | 8 | N8D | Aat | Gat | 14 | 14 | B.1.1 | 0.000254 |
N | 8 | N8H | Aat | Cat | 14 | 14 | B.1.617.2 | 0.000053 |
N | 8 | N8N | aaT | aaC | 14 | 14 | B.4.8 | 1 |
N | 8 | N8N | aaT | aaC | 13 | 13 | AY.42 | 0.000523 |
N | 8 | N8N | aaT | aaC | 13 | 13 | AY.7.1 | 0.001465 |
N | 8 | N8I | aAt | aTt | 13 | 13 | B.1.1.423 | 0.8125 |
N | 8 | N8I | aAt | aTt | 13 | 13 | B.1.1.7 | 0.000012 |
N | 8 | N8D | Aat | Gat | 12 | 12 | B.1 | 0.00011 |
N | 8 | N8K | aaT | aaA | 11 | 12 | B.1 | 0.000101 |
N | 8 | N8K | aaT | aaG | 1 | 12 | B.1 | 0.000009 |
N | 8 | N8D | Aat | Gat | 12 | 12 | Q.1 | 0.001516 |
N | 8 | N8S | aAt | aGt | 11 | 11 | AY.33 | 0.000735 |
N | 8 | N8S | aAt | aGt | 11 | 11 | B.1.2 | 0.000097 |
N | 8 | N8N | aaT | aaC | 11 | 11 | B.1.427 | 0.000555 |
N | 8 | N8T | aAt | aCt | 11 | 11 | P.1.16 | 0.004115 |
N | 8 | N8N | aaT | aaC | 10 | 10 | AY.102 | 0.000265 |
N | 8 | N8I | aAt | aTt | 10 | 10 | B.1 | 0.000092 |
N | 8 | N8N | aaT | aaC | 10 | 10 | B.1.1 | 0.000181 |
N | 8 | N8N | aaT | aaC | 10 | 10 | B.1.1.243 | 0.040816 |
N | 8 | N8S | aAt | aGt | 9 | 9 | AY.46.6 | 0.00065 |
N | 8 | N8del | AAT | --- | 9 | 9 | AY.99.2 | 0.000829 |
N | 8 | N8N | aaT | aaC | 9 | 9 | B.1.177 | 0.000119 |
N | 8 | N8Y | Aat | Tat | 9 | 9 | B.1.232 | 0.004836 |
N | 8 | N8Y | Aat | Tat | 9 | 9 | B.1.456 | 0.029412 |
N | 8 | N8N | aaT | aaC | 9 | 9 | P.1.7 | 0.002874 |
N | 8 | N8S | aAt | aGt | 8 | 8 | A | 0.003096 |
N | 8 | N8I | aAt | aTt | 8 | 8 | AY.39 | 0.000198 |
N | 8 | N8D | Aat | Gat | 8 | 8 | AY.43 | 0.000035 |
N | 8 | N8Y | Aat | Tat | 8 | 8 | B.1 | 0.000073 |
N | 8 | N8H | Aat | Cat | 8 | 8 | B.1.1.25 | 0.004548 |
N | 8 | N8K | aaT | aaG | 7 | 8 | B.1.2 | 0.000062 |
N | 8 | N8K | aaT | aaA | 1 | 8 | B.1.2 | 0.000009 |
N | 8 | N8N | aaT | aaC | 8 | 8 | B.1.258 | 0.000532 |
N | 8 | N8S | aAt | aGt | 8 | 8 | B.1.427 | 0.000404 |
N | 8 | N8H | Aat | Cat | 8 | 8 | P.1.12 | 0.003872 |
N | 8 | N8I | aAt | aTt | 8 | 8 | P.1.15 | 0.001859 |
N | 8 | N8H | Aat | Cat | 7 | 7 | AY.3 | 0.00007 |
N | 8 | N8N | aaT | aaC | 7 | 7 | AY.39 | 0.000173 |
N | 8 | N8I | aAt | aTt | 7 | 7 | AY.4 | 0.000011 |
N | 8 | N8S | aAt | aGt | 7 | 7 | AY.47 | 0.000218 |
N | 8 | N8I | aAt | aTt | 7 | 7 | B.1.1.189 | 0.01059 |
N | 8 | N8N | aaT | aaC | 7 | 7 | B.1.429 | 0.000165 |
N | 8 | N8Y | Aat | Tat | 7 | 7 | B.1.617.2 | 0.000026 |
N | 8 | N8Q | AaT | CaA | 6 | 6 | All | 0.000001 |
N | 8 | N8N | aaT | aaC | 6 | 6 | AY.100 | 0.000276 |
N | 8 | N8Y | Aat | Tat | 6 | 6 | AY.103 | 0.000037 |
N | 8 | N8N | aaT | aaC | 6 | 6 | AY.14 | 0.000528 |
N | 8 | N8N | aaT | aaC | 6 | 6 | AY.23 | 0.000418 |
N | 8 | N8N | aaT | aaC | 6 | 6 | AY.26 | 0.00017 |
N | 8 | N8S | aAt | aGt | 6 | 6 | AY.39 | 0.000148 |
N | 8 | N8S | aAt | aGt | 6 | 6 | AY.43 | 0.000027 |
N | 8 | N8H | Aat | Cat | 6 | 6 | B.1.1.269 | 0.008119 |
N | 8 | N8Y | Aat | Tat | 6 | 6 | B.1.351 | 0.000178 |
N | 8 | N8T | aAt | aCt | 6 | 6 | B.1.617.2 | 0.000023 |
N | 8 | N8Y | Aat | Tat | 6 | 6 | P.1 | 0.000095 |
N | 8 | N8D | Aat | Gat | 4 | 6 | P.1 | 0.000063 |
N | 8 | N8D | AaT | GaC | 2 | 6 | P.1 | 0.000032 |
N | 8 | N8H | Aat | Cat | 6 | 6 | P.1.1 | 0.001906 |
N | 8 | N8C | AAt | TGt | 5 | 5 | All | 0.000001 |
N | 8 | N8N | aaT | aaC | 5 | 5 | AY.118 | 0.000313 |
N | 8 | N8del | AAT | --- | 5 | 5 | AY.43 | 0.000022 |
N | 8 | N8K | aaT | aaG | 5 | 5 | AY.43 | 0.000022 |
N | 8 | N8N | aaT | aaC | 5 | 5 | AY.47 | 0.000156 |
N | 8 | N8N | aaT | aaC | 5 | 5 | AY.5 | 0.000103 |
N | 8 | N8D | Aat | Gat | 5 | 5 | B.1.429 | 0.000118 |
N | 8 | N8I | aAt | aTt | 5 | 5 | B.1.617.2 | 0.000019 |
N | 8 | N8N | aaT | aaC | 5 | 5 | C.38 | 0.040323 |
N | 8 | N8Q | AaT | CaA | 5 | 5 | P.1 | 0.000079 |
N | 8 | N8S | aAt | aGt | 5 | 5 | Q.1 | 0.000632 |
N | 8 | N8S | aAt | aGt | 4 | 4 | AY.100 | 0.000184 |
N | 8 | N8S | aAt | aGt | 4 | 4 | AY.106 | 0.00134 |
N | 8 | N8Y | Aat | Tat | 4 | 4 | AY.23 | 0.000279 |
N | 8 | N8H | Aat | Cat | 4 | 4 | AY.25 | 0.000024 |
N | 8 | N8Y | Aat | Tat | 4 | 4 | AY.43 | 0.000018 |
N | 8 | N8I | aAt | aTt | 4 | 4 | AY.44 | 0.000024 |
N | 8 | N8N | aaT | aaC | 4 | 4 | AY.53 | 0.00115 |
N | 8 | N8N | aaT | aaC | 4 | 4 | AY.69 | 0.000747 |
N | 8 | N8N | aaT | aaC | 4 | 4 | B | 0.000511 |
N | 8 | N8Y | Aat | Tat | 4 | 4 | B.1.1 | 0.000073 |
N | 8 | N8Y | Aat | Tat | 4 | 4 | B.1.1.28 | 0.001245 |
N | 8 | N8N | aaT | aaC | 4 | 4 | B.1.1.318 | 0.001207 |
N | 8 | N8S | aAt | aGt | 4 | 4 | B.1.1.519 | 0.000159 |
N | 8 | N8T | aAt | aCt | 4 | 4 | B.1.1.7 | 0.000004 |
N | 8 | N8S | aAt | aGt | 4 | 4 | B.1.429 | 0.000094 |
N | 8 | N8S | aAt | aGt | 4 | 4 | B.1.526 | 0.000094 |
N | 8 | N8N | aaT | aaC | 4 | 4 | B.1.575 | 0.001214 |
N | 8 | N8N | aaT | aaC | 4 | 4 | B.1.596 | 0.000349 |
N | 8 | N8K | aaT | aaG | 4 | 4 | B.1.617.2 | 0.000015 |
N | 8 | N8S | aAt | aGt | 4 | 4 | P.1 | 0.000063 |
N | 8 | N8H | Aat | Cat | 4 | 4 | P.4 | 0.015209 |
N | 8 | N8N | aaT | aaC | 3 | 3 | A | 0.001161 |
N | 8 | N8Y | Aat | Tat | 3 | 3 | AY.102 | 0.00008 |
N | 8 | N8S | aAt | aGt | 3 | 3 | AY.102 | 0.00008 |
N | 8 | N8S | aAt | aGt | 3 | 3 | AY.103 | 0.000019 |
N | 8 | N8N | aaT | aaC | 3 | 3 | AY.119 | 0.000106 |
N | 8 | N8N | aaT | aaC | 3 | 3 | AY.24 | 0.001293 |
N | 8 | N8I | aAt | aTt | 3 | 3 | AY.25 | 0.000018 |
N | 8 | N8Y | Aat | Tat | 3 | 3 | AY.26 | 0.000085 |
N | 8 | N8N | aaT | aaC | 3 | 3 | AY.3 | 0.00003 |
N | 8 | N8T | aAt | aCt | 3 | 3 | AY.3 | 0.00003 |
N | 8 | N8N | aaT | aaC | 3 | 3 | AY.39.1 | 0.000119 |
N | 8 | N8N | aaT | aaC | 3 | 3 | AY.99.2 | 0.000276 |
N | 8 | N8S | aAt | aGt | 3 | 3 | B.1 | 0.000027 |
N | 8 | N8N | aaT | aaC | 3 | 3 | B.1.1.157 | 0.00274 |
N | 8 | N8Y | Aat | Tat | 3 | 3 | B.1.1.33 | 0.001263 |
N | 8 | N8del | AAT | --- | 3 | 3 | B.1.1.7 | 0.000003 |
N | 8 | N8N | aaT | aaC | 3 | 3 | B.1.160 | 0.000094 |
N | 8 | N8K | aaT | aaG | 3 | 3 | B.1.177 | 0.00004 |
N | 8 | N8D | Aat | Gat | 3 | 3 | B.1.177 | 0.00004 |
N | 8 | N8H | Aat | Cat | 3 | 3 | B.1.177 | 0.00004 |
N | 8 | N8S | aAt | aGt | 3 | 3 | B.1.177.18 | 0.00348 |
N | 8 | N8D | Aat | Gat | 3 | 3 | B.1.177.73 | 0.001699 |
N | 8 | N8I | aAt | aTt | 3 | 3 | B.1.177.73 | 0.001699 |
N | 8 | N8H | Aat | Cat | 3 | 3 | B.1.258.17 | 0.000312 |
N | 8 | N8N | aaT | aaC | 3 | 3 | B.1.36 | 0.000438 |
N | 8 | N8Y | Aat | Tat | 3 | 3 | B.1.36.39 | 0.006652 |
N | 8 | N8D | Aat | Gat | 3 | 3 | B.1.443 | 0.014019 |
N | 8 | N8N | aaT | aaC | 3 | 3 | B.1.617.1 | 0.000387 |
N | 8 | N8N | aaT | aaC | 3 | 3 | B.6 | 0.00273 |
N | 8 | N8Y | Aat | Tat | 3 | 3 | N.3 | 0.017442 |
N | 8 | N8N | aaT | aaC | 3 | 3 | Q.1 | 0.000379 |
N | 8 | N8Y | Aat | Tat | 2 | 2 | A.2.5 | 0.000998 |
N | 8 | N8G | AAT | GGC | 1 | 2 | All | 0 |
N | 8 | N8R | aAT | aGA | 1 | 2 | All | 0 |
N | 8 | N8G | AAt | GGt | 1 | 2 | All | 0 |
N | 8 | N8R | AAt | CGt | 1 | 2 | All | 0 |
N | 8 | N8I | aAt | aTt | 2 | 2 | AY.102 | 0.000053 |
N | 8 | N8D | Aat | Gat | 2 | 2 | AY.103 | 0.000012 |
N | 8 | N8I | aAt | aTt | 2 | 2 | AY.103 | 0.000012 |
N | 8 | N8N | aaT | aaC | 2 | 2 | AY.107 | 0.000932 |
N | 8 | N8N | aaT | aaC | 2 | 2 | AY.114 | 0.000462 |
N | 8 | N8S | aAt | aGt | 2 | 2 | AY.117 | 0.000169 |
N | 8 | N8N | aaT | aaC | 2 | 2 | AY.121 | 0.000271 |
N | 8 | N8I | aAt | aTt | 2 | 2 | AY.16 | 0.000759 |
N | 8 | N8N | aaT | aaC | 2 | 2 | AY.20 | 0.000078 |
N | 8 | N8S | aAt | aGt | 2 | 2 | AY.20 | 0.000078 |
N | 8 | N8K | aaT | aaG | 2 | 2 | AY.23 | 0.000139 |
N | 8 | N8S | aAt | aGt | 2 | 2 | AY.26 | 0.000057 |
N | 8 | N8D | Aat | Gat | 2 | 2 | AY.33 | 0.000134 |
N | 8 | N8T | aAt | aCt | 2 | 2 | AY.4 | 0.000003 |
N | 8 | N8N | aaT | aaC | 2 | 2 | AY.4.2 | 0.000043 |
N | 8 | N8Y | Aat | Tat | 2 | 2 | AY.4.2 | 0.000043 |
N | 8 | N8Y | Aat | Tat | 2 | 2 | AY.44 | 0.000012 |
N | 8 | N8D | Aat | Gat | 2 | 2 | AY.44 | 0.000012 |
N | 8 | N8del | AAT | --- | 2 | 2 | AY.46 | 0.000208 |
N | 8 | N8N | aaT | aaC | 2 | 2 | AY.46.5 | 0.000397 |
N | 8 | N8D | Aat | Gat | 2 | 2 | AY.5 | 0.000041 |
N | 8 | N8K | aaT | aaG | 2 | 2 | AY.55 | 0.001835 |
N | 8 | N8N | aaT | aaC | 2 | 2 | AY.55 | 0.001835 |
N | 8 | N8N | aaT | aaC | 2 | 2 | AY.61 | 0.00021 |
N | 8 | N8K | aaT | aaG | 2 | 2 | AY.61 | 0.00021 |
N | 8 | N8I | aAt | aTt | 2 | 2 | AY.87 | 0.001665 |
N | 8 | N8N | aaT | aaC | 2 | 2 | AY.9.2 | 0.000073 |
N | 8 | N8T | aAt | aCt | 2 | 2 | B.1 | 0.000018 |
N | 8 | N8H | Aat | Cat | 2 | 2 | B.1 | 0.000018 |
N | 8 | N8I | aAt | aTt | 2 | 2 | B.1.1.148 | 0.017544 |
N | 8 | N8N | aaT | aaC | 2 | 2 | B.1.1.333 | 0.002153 |
N | 8 | N8S | aAt | aGt | 2 | 2 | B.1.1.348 | 0.001592 |
N | 8 | N8N | aaT | aaC | 2 | 2 | B.1.1.351 | 0.005587 |
N | 8 | N8I | aAt | aTt | 2 | 2 | B.1.1.37 | 0.000386 |
N | 8 | N8Y | Aat | Tat | 2 | 2 | B.1.1.376 | 0.011905 |
N | 8 | N8N | aaT | aaC | 2 | 2 | B.1.1.519 | 0.000079 |
N | 8 | N8D | Aat | Gat | 2 | 2 | B.1.1.528 | 0.009615 |
N | 8 | N8C | AAt | TGt | 2 | 2 | B.1.1.7 | 0.000002 |
N | 8 | N8T | aAt | aCt | 2 | 2 | B.1.177 | 0.000026 |
N | 8 | N8N | aaT | aaC | 2 | 2 | B.1.221 | 0.000142 |
N | 8 | N8K | aaT | aaG | 2 | 2 | B.1.243 | 0.000139 |
N | 8 | N8K | aaT | aaA | 2 | 2 | B.1.258 | 0.000133 |
N | 8 | N8N | aaT | aaC | 2 | 2 | B.1.258.17 | 0.000208 |
N | 8 | N8T | aAt | aCt | 2 | 2 | B.1.427 | 0.000101 |
N | 8 | N8N | aaT | aaC | 2 | 2 | B.1.561 | 0.000794 |
N | 8 | N8N | aaT | aaC | 2 | 2 | B.1.565 | 0.001621 |
N | 8 | N8S | aAt | aGt | 2 | 2 | B.1.575 | 0.000607 |
N | 8 | N8N | aaT | aaC | 2 | 2 | B.1.575.1 | 0.004878 |
N | 8 | N8I | aAt | aTt | 2 | 2 | B.1.588 | 0.00182 |
N | 8 | N8I | aAt | aTt | 2 | 2 | B.1.596 | 0.000174 |
N | 8 | N8D | Aat | Gat | 2 | 2 | B.1.617.2 | 0.000008 |
N | 8 | N8N | aaT | aaC | 2 | 2 | B.1.621 | 0.000177 |
N | 8 | N8K | aaT | aaG | 2 | 2 | B.1.8 | 0.003945 |
N | 8 | N8H | Aat | Cat | 2 | 2 | P.1.10 | 0.000539 |
N | 8 | N8N | aaT | aaC | 2 | 2 | P.1.12 | 0.000968 |
N | 8 | N8Y | Aat | Tat | 2 | 2 | P.1.15 | 0.000465 |
N | 8 | N8Y | Aat | Tat | 2 | 2 | P.2 | 0.000373 |
N | 8 | N8D | Aat | Gat | 1 | 1 | 0.055556 | |
N | 8 | N8D | Aat | Gat | 1 | 1 | A | 0.000387 |
N | 8 | N8S | aAt | aGt | 1 | 1 | A.2.5 | 0.000499 |
N | 8 | N8T | aAt | aCt | 1 | 1 | AH.3 | 0.003802 |
N | 8 | N8A | AAT | GCC | 1 | 1 | All | 0 |
N | 8 | N8del | AAT | --- | 1 | 1 | AY.100 | 0.000046 |
N | 8 | N8Y | Aat | Tat | 1 | 1 | AY.100 | 0.000046 |
N | 8 | N8Y | Aat | Tat | 1 | 1 | AY.101 | 0.00049 |
N | 8 | N8S | aAt | aGt | 1 | 1 | AY.101 | 0.00049 |
N | 8 | N8del | AAT | --- | 1 | 1 | AY.101 | 0.00049 |
N | 8 | N8D | Aat | Gat | 1 | 1 | AY.102 | 0.000027 |
N | 8 | N8H | Aat | Cat | 1 | 1 | AY.103 | 0.000006 |
N | 8 | N8S | aAt | aGt | 1 | 1 | AY.104 | 0.001984 |
N | 8 | N8D | Aat | Gat | 1 | 1 | AY.11 | 0.001339 |
N | 8 | N8I | aAt | aTt | 1 | 1 | AY.113 | 0.000142 |
N | 8 | N8N | aaT | aaC | 1 | 1 | AY.113 | 0.000142 |
N | 8 | N8I | aAt | aTt | 1 | 1 | AY.117 | 0.000085 |
N | 8 | N8G | AAt | GGt | 1 | 1 | AY.118 | 0.000063 |
N | 8 | N8S | aAt | aGt | 1 | 1 | AY.119 | 0.000035 |
N | 8 | N8K | aaT | aaA | 1 | 1 | AY.119 | 0.000035 |
N | 8 | N8N | aaT | aaC | 1 | 1 | AY.120 | 0.000037 |
N | 8 | N8I | aAt | aTt | 1 | 1 | AY.120.1 | 0.000321 |
N | 8 | N8D | Aat | Gat | 1 | 1 | AY.13 | 0.000161 |
N | 8 | N8T | aAt | aCt | 1 | 1 | AY.16.1 | 0.00047 |
N | 8 | N8S | aAt | aGt | 1 | 1 | AY.16.1 | 0.00047 |
N | 8 | N8T | aAt | aCt | 1 | 1 | AY.20 | 0.000039 |
N | 8 | N8K | aaT | aaA | 1 | 1 | AY.20 | 0.000039 |
N | 8 | N8del | AAT | --- | 1 | 1 | AY.23 | 0.00007 |
N | 8 | N8S | aAt | aGt | 1 | 1 | AY.23 | 0.00007 |
N | 8 | N8H | Aat | Cat | 1 | 1 | AY.23 | 0.00007 |
N | 8 | N8D | Aat | Gat | 1 | 1 | AY.23 | 0.00007 |
N | 8 | N8N | aaT | aaC | 1 | 1 | AY.23.1 | 0.000417 |
N | 8 | N8S | aAt | aGt | 1 | 1 | AY.24 | 0.000431 |
N | 8 | N8I | aAt | aTt | 1 | 1 | AY.26 | 0.000028 |
N | 8 | N8S | aAt | aGt | 1 | 1 | AY.28 | 0.00189 |
N | 8 | N8D | Aat | Gat | 1 | 1 | AY.29 | 0.000016 |
N | 8 | N8Y | Aat | Tat | 1 | 1 | AY.3.1 | 0.000085 |
N | 8 | N8S | aAt | aGt | 1 | 1 | AY.3.1 | 0.000085 |
N | 8 | N8del | AAT | --- | 1 | 1 | AY.33 | 0.000067 |
N | 8 | N8N | aaT | aaC | 1 | 1 | AY.35 | 0.000233 |
N | 8 | N8T | aAt | aCt | 1 | 1 | AY.39 | 0.000025 |
N | 8 | N8Y | Aat | Tat | 1 | 1 | AY.39 | 0.000025 |
N | 8 | N8I | aAt | aTt | 1 | 1 | AY.39.1 | 0.00004 |
N | 8 | N8S | aAt | aGt | 1 | 1 | AY.39.2 | 0.001541 |
N | 8 | N8K | aaT | aaG | 1 | 1 | AY.4 | 0.000002 |
N | 8 | N8K | aaT | aaG | 1 | 1 | AY.4.2 | 0.000022 |
N | 8 | N8S | aAt | aGt | 1 | 1 | AY.4.2 | 0.000022 |
N | 8 | N8N | aaT | aaC | 1 | 1 | AY.4.2.1 | 0.000149 |
N | 8 | N8N | aaT | aaC | 1 | 1 | AY.4.4 | 0.000409 |
N | 8 | N8del | AAT | --- | 1 | 1 | AY.4.4 | 0.000409 |
N | 8 | N8del | AAT | --- | 1 | 1 | AY.44 | 0.000006 |
N | 8 | N8T | aAt | aCt | 1 | 1 | AY.44 | 0.000006 |
N | 8 | N8H | Aat | Cat | 1 | 1 | AY.44 | 0.000006 |
N | 8 | N8N | aaT | aaC | 1 | 1 | AY.45 | 0.000122 |
N | 8 | N8S | aAt | aGt | 1 | 1 | AY.45 | 0.000122 |
N | 8 | N8del | AAT | --- | 1 | 1 | AY.46.3 | 0.000934 |
N | 8 | N8I | aAt | aTt | 1 | 1 | AY.46.4 | 0.000165 |
N | 8 | N8H | Aat | Cat | 1 | 1 | AY.46.5 | 0.000198 |
N | 8 | N8Y | Aat | Tat | 1 | 1 | AY.46.6 | 0.000072 |
N | 8 | N8del | AAT | --- | 1 | 1 | AY.46.6 | 0.000072 |
N | 8 | N8del | AAT | --- | 1 | 1 | AY.5.3 | 0.000337 |
N | 8 | N8H | Aat | Cat | 1 | 1 | AY.5.4 | 0.000277 |
N | 8 | N8N | aaT | aaC | 1 | 1 | AY.54 | 0.000095 |
N | 8 | N8S | aAt | aGt | 1 | 1 | AY.54 | 0.000095 |
N | 8 | N8N | aaT | aaC | 1 | 1 | AY.56 | 0.001605 |
N | 8 | N8N | aaT | aaC | 1 | 1 | AY.58 | 0.000907 |
N | 8 | N8S | aAt | aGt | 1 | 1 | AY.59 | 0.00053 |
N | 8 | N8S | aAt | aGt | 1 | 1 | AY.6 | 0.000041 |
N | 8 | N8N | aaT | aaC | 1 | 1 | AY.6 | 0.000041 |
N | 8 | N8D | Aat | Gat | 1 | 1 | AY.6 | 0.000041 |
N | 8 | N8I | aAt | aTt | 1 | 1 | AY.61 | 0.000105 |
N | 8 | N8H | Aat | Cat | 1 | 1 | AY.61 | 0.000105 |
N | 8 | N8N | aaT | aaC | 1 | 1 | AY.62 | 0.000436 |
N | 8 | N8K | aaT | aaA | 1 | 1 | AY.62 | 0.000436 |
N | 8 | N8S | aAt | aGt | 1 | 1 | AY.63 | 0.000387 |
N | 8 | N8Y | Aat | Tat | 1 | 1 | AY.75 | 0.000056 |
N | 8 | N8N | aaT | aaC | 1 | 1 | AY.77 | 0.001127 |
N | 8 | N8I | aAt | aTt | 1 | 1 | AY.8 | 0.000606 |
N | 8 | N8D | Aat | Gat | 1 | 1 | AY.9.1 | 0.000084 |
N | 8 | N8T | aAt | aCt | 1 | 1 | AY.9.2 | 0.000037 |
N | 8 | N8S | aAt | aGt | 1 | 1 | AY.90 | 0.000684 |
N | 8 | N8S | aAt | aGt | 1 | 1 | AY.95 | 0.000761 |
N | 8 | N8N | aaT | aaC | 1 | 1 | AY.95 | 0.000761 |
N | 8 | N8N | aaT | aaC | 1 | 1 | AY.98 | 0.000079 |
N | 8 | N8C | AAt | TGt | 1 | 1 | AY.99.2 | 0.000092 |
N | 8 | N8D | Aat | Gat | 1 | 1 | B | 0.000128 |
N | 8 | N8del | AAT | --- | 1 | 1 | B.1.1 | 0.000018 |
N | 8 | N8I | aAt | aTt | 1 | 1 | B.1.1 | 0.000018 |
N | 8 | N8K | aaT | aaA | 1 | 1 | B.1.1 | 0.000018 |
N | 8 | N8Y | Aat | Tat | 1 | 1 | B.1.1.176 | 0.000439 |
N | 8 | N8S | aAt | aGt | 1 | 1 | B.1.1.192 | 0.002309 |
N | 8 | N8Y | Aat | Tat | 1 | 1 | B.1.1.192 | 0.002309 |
N | 8 | N8I | aAt | aTt | 1 | 1 | B.1.1.207 | 0.001182 |
N | 8 | N8N | aaT | aaC | 1 | 1 | B.1.1.214 | 0.000055 |
N | 8 | N8I | aAt | aTt | 1 | 1 | B.1.1.214 | 0.000055 |
N | 8 | N8S | aAt | aGt | 1 | 1 | B.1.1.220 | 0.001859 |
N | 8 | N8T | aAt | aCt | 1 | 1 | B.1.1.224 | 0.014286 |
N | 8 | N8N | aaT | aaC | 1 | 1 | B.1.1.241 | 0.00207 |
N | 8 | N8I | aAt | aTt | 1 | 1 | B.1.1.28 | 0.000311 |
N | 8 | N8N | aaT | aaC | 1 | 1 | B.1.1.28 | 0.000311 |
N | 8 | N8N | aaT | aaC | 1 | 1 | B.1.1.291 | 0.000742 |
N | 8 | N8N | aaT | aaC | 1 | 1 | B.1.1.306 | 0.000438 |
N | 8 | N8Y | Aat | Tat | 1 | 1 | B.1.1.306 | 0.000438 |
N | 8 | N8D | Aat | Gat | 1 | 1 | B.1.1.306 | 0.000438 |
N | 8 | N8Y | Aat | Tat | 1 | 1 | B.1.1.31 | 0.066667 |
N | 8 | N8D | Aat | Gat | 1 | 1 | B.1.1.312 | 0.001912 |
N | 8 | N8S | aAt | aGt | 1 | 1 | B.1.1.318 | 0.000302 |
N | 8 | N8N | aaT | aaC | 1 | 1 | B.1.1.33 | 0.000421 |
N | 8 | N8Y | Aat | Tat | 1 | 1 | B.1.1.333 | 0.001076 |
N | 8 | N8K | aaT | aaA | 1 | 1 | B.1.1.37 | 0.000193 |
N | 8 | N8N | aaT | aaC | 1 | 1 | B.1.1.39 | 0.00051 |
N | 8 | N8D | Aat | Gat | 1 | 1 | B.1.1.409 | 0.002833 |
N | 8 | N8N | aaT | aaC | 1 | 1 | B.1.1.420 | 0.001006 |
N | 8 | N8K | aaT | aaG | 1 | 1 | B.1.1.486 | 0.001577 |
N | 8 | N8Y | Aat | Tat | 1 | 1 | B.1.1.519 | 0.00004 |
N | 8 | N8N | aaT | aaC | 1 | 1 | B.1.1.523 | 0.001563 |
N | 8 | N8S | aAt | aGt | 1 | 1 | B.1.1.63 | 0.000386 |
N | 8 | N8Y | Aat | Tat | 1 | 1 | B.1.111 | 0.001175 |
N | 8 | N8N | aaT | aaC | 1 | 1 | B.1.157 | 0.002985 |
N | 8 | N8Y | Aat | Tat | 1 | 1 | B.1.160 | 0.000031 |
N | 8 | N8I | aAt | aTt | 1 | 1 | B.1.160 | 0.000031 |
N | 8 | N8D | Aat | Gat | 1 | 1 | B.1.160 | 0.000031 |
N | 8 | N8N | aaT | aaC | 1 | 1 | B.1.160.14 | 0.002119 |
N | 8 | N8I | aAt | aTt | 1 | 1 | B.1.160.16 | 0.000929 |
N | 8 | N8N | aaT | aaC | 1 | 1 | B.1.160.16 | 0.000929 |
N | 8 | N8Y | Aat | Tat | 1 | 1 | B.1.177 | 0.000013 |
N | 8 | N8Y | Aat | Tat | 1 | 1 | B.1.177.21 | 0.000076 |
N | 8 | N8D | Aat | Gat | 1 | 1 | B.1.177.35 | 0.000691 |
N | 8 | N8I | aAt | aTt | 1 | 1 | B.1.177.45 | 0.000381 |
N | 8 | N8N | aaT | aaC | 1 | 1 | B.1.177.57 | 0.000281 |
N | 8 | N8K | aaT | aaA | 1 | 1 | B.1.177.60 | 0.000218 |
N | 8 | N8C | AAt | TGt | 1 | 1 | B.1.177.63 | 0.002703 |
N | 8 | N8I | aAt | aTt | 1 | 1 | B.1.177.69 | 0.001484 |
N | 8 | N8D | Aat | Gat | 1 | 1 | B.1.2 | 0.000009 |
N | 8 | N8S | aAt | aGt | 1 | 1 | B.1.221 | 0.000071 |
N | 8 | N8T | aAt | aCt | 1 | 1 | B.1.221 | 0.000071 |
N | 8 | N8D | Aat | Gat | 1 | 1 | B.1.221 | 0.000071 |
N | 8 | N8T | aAt | aCt | 1 | 1 | B.1.234 | 0.000132 |
N | 8 | N8K | aaT | aaA | 1 | 1 | B.1.234 | 0.000132 |
N | 8 | N8K | aaT | aaG | 1 | 1 | B.1.240 | 0.000216 |
N | 8 | N8N | aaT | aaC | 1 | 1 | B.1.243 | 0.00007 |
N | 8 | N8K | aaT | aaA | 1 | 1 | B.1.243.1 | 0.022222 |
N | 8 | N8Y | Aat | Tat | 1 | 1 | B.1.258 | 0.000067 |
N | 8 | N8Y | Aat | Tat | 1 | 1 | B.1.260 | 0.003344 |
N | 8 | N8Y | Aat | Tat | 1 | 1 | B.1.320 | 0.001245 |
N | 8 | N8N | aaT | aaC | 1 | 1 | B.1.336 | 0.002439 |
N | 8 | N8H | Aat | Cat | 1 | 1 | B.1.336 | 0.002439 |
N | 8 | N8N | aaT | aaC | 1 | 1 | B.1.349 | 0.000715 |
N | 8 | N8S | aAt | aGt | 1 | 1 | B.1.351 | 0.00003 |
N | 8 | N8D | Aat | Gat | 1 | 1 | B.1.351.3 | 0.000876 |
N | 8 | N8N | aaT | aaC | 1 | 1 | B.1.356 | 0.001727 |
N | 8 | N8D | Aat | Gat | 1 | 1 | B.1.36.10 | 0.004785 |
N | 8 | N8N | aaT | aaC | 1 | 1 | B.1.36.17 | 0.000494 |
N | 8 | N8H | Aat | Cat | 1 | 1 | B.1.36.39 | 0.002217 |
N | 8 | N8Y | Aat | Tat | 1 | 1 | B.1.36.8 | 0.001 |
N | 8 | N8I | aAt | aTt | 1 | 1 | B.1.362 | 0.001541 |
N | 8 | N8I | aAt | aTt | 1 | 1 | B.1.369 | 0.000285 |
N | 8 | N8H | Aat | Cat | 1 | 1 | B.1.375 | 0.00082 |
N | 8 | N8Y | Aat | Tat | 1 | 1 | B.1.383 | 0.009009 |
N | 8 | N8N | aaT | aaC | 1 | 1 | B.1.400 | 0.000429 |
N | 8 | N8H | Aat | Cat | 1 | 1 | B.1.427 | 0.00005 |
N | 8 | N8I | aAt | aTt | 1 | 1 | B.1.427 | 0.00005 |
N | 8 | N8K | aaT | aaA | 1 | 1 | B.1.427 | 0.00005 |
N | 8 | N8S | aAt | aGt | 1 | 1 | B.1.466.2 | 0.000391 |
N | 8 | N8N | aaT | aaC | 1 | 1 | B.1.470 | 0.001404 |
N | 8 | N8I | aAt | aTt | 1 | 1 | B.1.499 | 0.00105 |
N | 8 | N8N | aaT | aaC | 1 | 1 | B.1.517 | 0.000427 |
N | 8 | N8K | aaT | aaA | 1 | 1 | B.1.575 | 0.000303 |
N | 8 | N8I | aAt | aTt | 1 | 1 | B.1.595 | 0.000261 |
N | 8 | N8I | aAt | aTt | 1 | 1 | B.1.606 | 0.006024 |
N | 8 | N8N | aaT | aaC | 1 | 1 | B.1.609 | 0.000479 |
N | 8 | N8D | Aat | Gat | 1 | 1 | B.1.617.1 | 0.000129 |
N | 8 | N8del | AAT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
N | 8 | N8G | AAT | GGC | 1 | 1 | B.1.617.2 | 0.000004 |
N | 8 | N8S | aAt | aGt | 1 | 1 | B.1.621 | 0.000089 |
N | 8 | N8K | aaT | aaA | 1 | 1 | B.1.628 | 0.000352 |
N | 8 | N8N | aaT | aaC | 1 | 1 | B.1.628 | 0.000352 |
N | 8 | N8S | aAt | aGt | 1 | 1 | B.1.628 | 0.000352 |
N | 8 | N8Y | Aat | Tat | 1 | 1 | B.1.628 | 0.000352 |
N | 8 | N8S | aAt | aGt | 1 | 1 | B.1.635 | 0.017544 |
N | 8 | N8T | aAt | aCt | 1 | 1 | B.1.637 | 0.000073 |
N | 8 | N8N | aaT | aaC | 1 | 1 | B.1.93 | 0.000934 |
N | 8 | N8N | aaT | aaC | 1 | 1 | C.36 | 0.000911 |
N | 8 | N8D | Aat | Gat | 1 | 1 | C.36.3 | 0.000567 |
N | 8 | N8N | aaT | aaC | 1 | 1 | C.36.3.1 | 0.002717 |
N | 8 | N8N | aaT | aaC | 1 | 1 | D.2 | 0.000075 |
N | 8 | N8A | AAT | GCC | 1 | 1 | P.1 | 0.000016 |
N | 8 | N8T | aAT | aCC | 1 | 1 | P.1 | 0.000016 |
N | 8 | N8I | aAt | aTt | 1 | 1 | P.1 | 0.000016 |
N | 8 | N8N | aaT | aaC | 1 | 1 | P.1 | 0.000016 |
N | 8 | N8C | AAt | TGt | 1 | 1 | P.1 | 0.000016 |
N | 8 | N8R | aAT | aGA | 1 | 1 | P.1 | 0.000016 |
N | 8 | N8K | aaT | aaA | 1 | 1 | P.1 | 0.000016 |
N | 8 | N8D | Aat | Gat | 1 | 1 | P.1.1 | 0.000318 |
N | 8 | N8D | AaT | GaC | 1 | 1 | P.1.12 | 0.000484 |
N | 8 | N8Q | AaT | CaA | 1 | 1 | P.1.12 | 0.000484 |
N | 8 | N8S | aAt | aGt | 1 | 1 | P.1.14 | 0.000048 |
N | 8 | N8R | AAt | CGt | 1 | 1 | P.1.14 | 0.000048 |
N | 8 | N8T | aAT | aCC | 1 | 1 | P.1.15 | 0.000232 |
N | 8 | N8S | aAt | aGt | 1 | 1 | P.1.15 | 0.000232 |
N | 8 | N8del | AAT | --- | 1 | 1 | P.1.15 | 0.000232 |
N | 8 | N8H | Aat | Cat | 1 | 1 | P.1.15 | 0.000232 |
N | 8 | N8N | aaT | aaC | 1 | 1 | P.1.17 | 0.000162 |
N | 8 | N8del | AAT | --- | 1 | 1 | P.1.7 | 0.000319 |
N | 8 | N8T | aAt | aCt | 1 | 1 | P.1.7 | 0.000319 |
N | 8 | N8H | Aat | Cat | 1 | 1 | P.2 | 0.000187 |
N | 8 | N8I | aAt | aTt | 1 | 1 | P.3 | 0.001595 |
N | 8 | N8S | aAt | aGt | 1 | 1 | P.3 | 0.001595 |
N | 8 | N8I | aAt | aTt | 1 | 1 | Q.3 | 0.000145 |
N | 8 | N8N | aaT | aaC | 1 | 1 | Q.8 | 0.000165 |
N | 8 | N8D | Aat | Gat | 1 | 1 | Q.8 | 0.000165 |
N | 8 | N8N | aaT | aaC | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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