CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 8

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N8N8DnonsynAatGat527652720.99924228295-28297
N8N8DnonsynAaTGaC527640.0007581528295-28297
N8N8NsynaaTaaC27982798128295-28297
N8N8SnonsynaAtaGt906906128295-28297
N8N8YnonsynAatTat901901128295-28297
N8N8HnonsynAatCat589589128295-28297
N8N8KnonsynaaTaaA2642300.87121228295-28297
N8N8KnonsynaaTaaG264340.12878828295-28297
N8N8InonsynaAtaTt235235128295-28297
N8N8TnonsynaAtaCt2352330.99148928295-28297
N8N8TnonsynaATaCC23520.0085106428295-28297
N8N8deldelAAT---3232128295-28297
N8N8QnonsynAaTCaA66128295-28297
N8N8CnonsynAAtTGt55128295-28297
N8N8RnonsynAAtCGt210.528295-28297
N8N8GnonsynAATGGC210.528295-28297
N8N8RnonsynaATaGA210.528295-28297
N8N8GnonsynAAtGGt210.528295-28297
N8N8AnonsynAATGCC11128295-28297

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N8N8DAatGat52725276All0.001008
N8N8DAaTGaC45276All0.000001
N8N8DAatGat51045104B.1.1.70.004569
N8N8NaaTaaC27982798All0.000535
N8N8NaaTaaC971971B.1.6200.918638
N8N8SaAtaGt906906All0.000173
N8N8YAatTat901901All0.000172
N8N8HAatCat589589All0.000113
N8N8NaaTaaC560560AY.400.540019
N8N8YAatTat452452B.1.36.250.997792
N8N8SaAtaGt300300AY.7.10.03381
N8N8HAatCat278278B.1.1.70.000249
N8N8KaaTaaA230264All0.000044
N8N8KaaTaaG34264All0.000007
N8N8IaAtaTt235235All0.000045
N8N8TaAtaCt233235All0.000045
N8N8TaATaCC2235All0
N8N8SaAtaGt204204B.1.1.70.000183
N8N8KaaTaaA204204B.1.5260.004795
N8N8NaaTaaC171171B.1.1.70.000153
N8N8NaaTaaC141141AY.250.000848
N8N8NaaTaaC132132AY.380.065901
N8N8HAatCat132132AY.40.000205
N8N8TaAtaCt123123B.1.1.2940.155696
N8N8YAatTat111111B.1.6360.744966
N8N8NaaTaaC107107AY.40.000167
N8N8HAatCat100100P.10.001575
N8N8YAatTat9090B.1.1.70.000081
N8N8IaAtaTt7070B.1.20.000616
N8N8NaaTaaC6262B.10.000568
N8N8SaAtaGt5757AY.420.002293
N8N8NaaTaaC5757AY.440.000347
N8N8YAatTat4949AY.250.000295
N8N8NaaTaaC4545B.1.20.000396
N8N8IaAtaTt4343B.1.3960.030346
N8N8TaAtaCt4343M.11
N8N8NaaTaaC4141B.1.6161
N8N8NaaTaaC3939B.1.351.20.0118
N8N8DAatGat3636B.1.177.40.007598
N8N8NaaTaaC3636B.1.617.20.000136
N8N8DAatGat3334AY.40.000051
N8N8DAaTGaC134AY.40.000002
N8N8delAAT---3232All0.000006
N8N8SaAtaGt3131AY.40.000048
N8N8SaAtaGt3131B.1.1770.000408
N8N8YAatTat2828N.40.119149
N8N8TaAtaCt2424B.1.10.000435
N8N8SaAtaGt2424C.300.041451
N8N8SaAtaGt2222AY.250.000132
N8N8NaaTaaC2222B.1.5760.019946
N8N8SaAtaGt2222B.1.617.20.000083
N8N8NaaTaaC2222C.370.002553
N8N8YAatTat2020B.1.20.000176
N8N8NaaTaaC1919AY.1030.000118
N8N8SaAtaGt1919B.1.10.000345
N8N8YAatTat1818AY.40.000028
N8N8NaaTaaC1818B.1.5260.000423
N8N8NaaTaaC1717AY.430.000075
N8N8YAatTat1717B.1.360.00248
N8N8SaAtaGt1616A.270.02649
N8N8SaAtaGt1616AY.30.000159
N8N8SaAtaGt1616AY.440.000097
N8N8NaaTaaC1515AY.290.000237
N8N8NaaTaaC1414AY.750.000784
N8N8DAatGat1414B.1.10.000254
N8N8HAatCat1414B.1.617.20.000053
N8N8NaaTaaC1414B.4.81
N8N8NaaTaaC1313AY.420.000523
N8N8NaaTaaC1313AY.7.10.001465
N8N8IaAtaTt1313B.1.1.4230.8125
N8N8IaAtaTt1313B.1.1.70.000012
N8N8DAatGat1212B.10.00011
N8N8KaaTaaA1112B.10.000101
N8N8KaaTaaG112B.10.000009
N8N8DAatGat1212Q.10.001516
N8N8SaAtaGt1111AY.330.000735
N8N8SaAtaGt1111B.1.20.000097
N8N8NaaTaaC1111B.1.4270.000555
N8N8TaAtaCt1111P.1.160.004115
N8N8NaaTaaC1010AY.1020.000265
N8N8IaAtaTt1010B.10.000092
N8N8NaaTaaC1010B.1.10.000181
N8N8NaaTaaC1010B.1.1.2430.040816
N8N8SaAtaGt99AY.46.60.00065
N8N8delAAT---99AY.99.20.000829
N8N8NaaTaaC99B.1.1770.000119
N8N8YAatTat99B.1.2320.004836
N8N8YAatTat99B.1.4560.029412
N8N8NaaTaaC99P.1.70.002874
N8N8SaAtaGt88A0.003096
N8N8IaAtaTt88AY.390.000198
N8N8DAatGat88AY.430.000035
N8N8YAatTat88B.10.000073
N8N8HAatCat88B.1.1.250.004548
N8N8KaaTaaG78B.1.20.000062
N8N8KaaTaaA18B.1.20.000009
N8N8NaaTaaC88B.1.2580.000532
N8N8SaAtaGt88B.1.4270.000404
N8N8HAatCat88P.1.120.003872
N8N8IaAtaTt88P.1.150.001859
N8N8HAatCat77AY.30.00007
N8N8NaaTaaC77AY.390.000173
N8N8IaAtaTt77AY.40.000011
N8N8SaAtaGt77AY.470.000218
N8N8IaAtaTt77B.1.1.1890.01059
N8N8NaaTaaC77B.1.4290.000165
N8N8YAatTat77B.1.617.20.000026
N8N8QAaTCaA66All0.000001
N8N8NaaTaaC66AY.1000.000276
N8N8YAatTat66AY.1030.000037
N8N8NaaTaaC66AY.140.000528
N8N8NaaTaaC66AY.230.000418
N8N8NaaTaaC66AY.260.00017
N8N8SaAtaGt66AY.390.000148
N8N8SaAtaGt66AY.430.000027
N8N8HAatCat66B.1.1.2690.008119
N8N8YAatTat66B.1.3510.000178
N8N8TaAtaCt66B.1.617.20.000023
N8N8YAatTat66P.10.000095
N8N8DAatGat46P.10.000063
N8N8DAaTGaC26P.10.000032
N8N8HAatCat66P.1.10.001906
N8N8CAAtTGt55All0.000001
N8N8NaaTaaC55AY.1180.000313
N8N8delAAT---55AY.430.000022
N8N8KaaTaaG55AY.430.000022
N8N8NaaTaaC55AY.470.000156
N8N8NaaTaaC55AY.50.000103
N8N8DAatGat55B.1.4290.000118
N8N8IaAtaTt55B.1.617.20.000019
N8N8NaaTaaC55C.380.040323
N8N8QAaTCaA55P.10.000079
N8N8SaAtaGt55Q.10.000632
N8N8SaAtaGt44AY.1000.000184
N8N8SaAtaGt44AY.1060.00134
N8N8YAatTat44AY.230.000279
N8N8HAatCat44AY.250.000024
N8N8YAatTat44AY.430.000018
N8N8IaAtaTt44AY.440.000024
N8N8NaaTaaC44AY.530.00115
N8N8NaaTaaC44AY.690.000747
N8N8NaaTaaC44B0.000511
N8N8YAatTat44B.1.10.000073
N8N8YAatTat44B.1.1.280.001245
N8N8NaaTaaC44B.1.1.3180.001207
N8N8SaAtaGt44B.1.1.5190.000159
N8N8TaAtaCt44B.1.1.70.000004
N8N8SaAtaGt44B.1.4290.000094
N8N8SaAtaGt44B.1.5260.000094
N8N8NaaTaaC44B.1.5750.001214
N8N8NaaTaaC44B.1.5960.000349
N8N8KaaTaaG44B.1.617.20.000015
N8N8SaAtaGt44P.10.000063
N8N8HAatCat44P.40.015209
N8N8NaaTaaC33A0.001161
N8N8YAatTat33AY.1020.00008
N8N8SaAtaGt33AY.1020.00008
N8N8SaAtaGt33AY.1030.000019
N8N8NaaTaaC33AY.1190.000106
N8N8NaaTaaC33AY.240.001293
N8N8IaAtaTt33AY.250.000018
N8N8YAatTat33AY.260.000085
N8N8NaaTaaC33AY.30.00003
N8N8TaAtaCt33AY.30.00003
N8N8NaaTaaC33AY.39.10.000119
N8N8NaaTaaC33AY.99.20.000276
N8N8SaAtaGt33B.10.000027
N8N8NaaTaaC33B.1.1.1570.00274
N8N8YAatTat33B.1.1.330.001263
N8N8delAAT---33B.1.1.70.000003
N8N8NaaTaaC33B.1.1600.000094
N8N8KaaTaaG33B.1.1770.00004
N8N8DAatGat33B.1.1770.00004
N8N8HAatCat33B.1.1770.00004
N8N8SaAtaGt33B.1.177.180.00348
N8N8DAatGat33B.1.177.730.001699
N8N8IaAtaTt33B.1.177.730.001699
N8N8HAatCat33B.1.258.170.000312
N8N8NaaTaaC33B.1.360.000438
N8N8YAatTat33B.1.36.390.006652
N8N8DAatGat33B.1.4430.014019
N8N8NaaTaaC33B.1.617.10.000387
N8N8NaaTaaC33B.60.00273
N8N8YAatTat33N.30.017442
N8N8NaaTaaC33Q.10.000379
N8N8YAatTat22A.2.50.000998
N8N8GAATGGC12All0
N8N8RaATaGA12All0
N8N8GAAtGGt12All0
N8N8RAAtCGt12All0
N8N8IaAtaTt22AY.1020.000053
N8N8DAatGat22AY.1030.000012
N8N8IaAtaTt22AY.1030.000012
N8N8NaaTaaC22AY.1070.000932
N8N8NaaTaaC22AY.1140.000462
N8N8SaAtaGt22AY.1170.000169
N8N8NaaTaaC22AY.1210.000271
N8N8IaAtaTt22AY.160.000759
N8N8NaaTaaC22AY.200.000078
N8N8SaAtaGt22AY.200.000078
N8N8KaaTaaG22AY.230.000139
N8N8SaAtaGt22AY.260.000057
N8N8DAatGat22AY.330.000134
N8N8TaAtaCt22AY.40.000003
N8N8NaaTaaC22AY.4.20.000043
N8N8YAatTat22AY.4.20.000043
N8N8YAatTat22AY.440.000012
N8N8DAatGat22AY.440.000012
N8N8delAAT---22AY.460.000208
N8N8NaaTaaC22AY.46.50.000397
N8N8DAatGat22AY.50.000041
N8N8KaaTaaG22AY.550.001835
N8N8NaaTaaC22AY.550.001835
N8N8NaaTaaC22AY.610.00021
N8N8KaaTaaG22AY.610.00021
N8N8IaAtaTt22AY.870.001665
N8N8NaaTaaC22AY.9.20.000073
N8N8TaAtaCt22B.10.000018
N8N8HAatCat22B.10.000018
N8N8IaAtaTt22B.1.1.1480.017544
N8N8NaaTaaC22B.1.1.3330.002153
N8N8SaAtaGt22B.1.1.3480.001592
N8N8NaaTaaC22B.1.1.3510.005587
N8N8IaAtaTt22B.1.1.370.000386
N8N8YAatTat22B.1.1.3760.011905
N8N8NaaTaaC22B.1.1.5190.000079
N8N8DAatGat22B.1.1.5280.009615
N8N8CAAtTGt22B.1.1.70.000002
N8N8TaAtaCt22B.1.1770.000026
N8N8NaaTaaC22B.1.2210.000142
N8N8KaaTaaG22B.1.2430.000139
N8N8KaaTaaA22B.1.2580.000133
N8N8NaaTaaC22B.1.258.170.000208
N8N8TaAtaCt22B.1.4270.000101
N8N8NaaTaaC22B.1.5610.000794
N8N8NaaTaaC22B.1.5650.001621
N8N8SaAtaGt22B.1.5750.000607
N8N8NaaTaaC22B.1.575.10.004878
N8N8IaAtaTt22B.1.5880.00182
N8N8IaAtaTt22B.1.5960.000174
N8N8DAatGat22B.1.617.20.000008
N8N8NaaTaaC22B.1.6210.000177
N8N8KaaTaaG22B.1.80.003945
N8N8HAatCat22P.1.100.000539
N8N8NaaTaaC22P.1.120.000968
N8N8YAatTat22P.1.150.000465
N8N8YAatTat22P.20.000373
N8N8DAatGat110.055556
N8N8DAatGat11A0.000387
N8N8SaAtaGt11A.2.50.000499
N8N8TaAtaCt11AH.30.003802
N8N8AAATGCC11All0
N8N8delAAT---11AY.1000.000046
N8N8YAatTat11AY.1000.000046
N8N8YAatTat11AY.1010.00049
N8N8SaAtaGt11AY.1010.00049
N8N8delAAT---11AY.1010.00049
N8N8DAatGat11AY.1020.000027
N8N8HAatCat11AY.1030.000006
N8N8SaAtaGt11AY.1040.001984
N8N8DAatGat11AY.110.001339
N8N8IaAtaTt11AY.1130.000142
N8N8NaaTaaC11AY.1130.000142
N8N8IaAtaTt11AY.1170.000085
N8N8GAAtGGt11AY.1180.000063
N8N8SaAtaGt11AY.1190.000035
N8N8KaaTaaA11AY.1190.000035
N8N8NaaTaaC11AY.1200.000037
N8N8IaAtaTt11AY.120.10.000321
N8N8DAatGat11AY.130.000161
N8N8TaAtaCt11AY.16.10.00047
N8N8SaAtaGt11AY.16.10.00047
N8N8TaAtaCt11AY.200.000039
N8N8KaaTaaA11AY.200.000039
N8N8delAAT---11AY.230.00007
N8N8SaAtaGt11AY.230.00007
N8N8HAatCat11AY.230.00007
N8N8DAatGat11AY.230.00007
N8N8NaaTaaC11AY.23.10.000417
N8N8SaAtaGt11AY.240.000431
N8N8IaAtaTt11AY.260.000028
N8N8SaAtaGt11AY.280.00189
N8N8DAatGat11AY.290.000016
N8N8YAatTat11AY.3.10.000085
N8N8SaAtaGt11AY.3.10.000085
N8N8delAAT---11AY.330.000067
N8N8NaaTaaC11AY.350.000233
N8N8TaAtaCt11AY.390.000025
N8N8YAatTat11AY.390.000025
N8N8IaAtaTt11AY.39.10.00004
N8N8SaAtaGt11AY.39.20.001541
N8N8KaaTaaG11AY.40.000002
N8N8KaaTaaG11AY.4.20.000022
N8N8SaAtaGt11AY.4.20.000022
N8N8NaaTaaC11AY.4.2.10.000149
N8N8NaaTaaC11AY.4.40.000409
N8N8delAAT---11AY.4.40.000409
N8N8delAAT---11AY.440.000006
N8N8TaAtaCt11AY.440.000006
N8N8HAatCat11AY.440.000006
N8N8NaaTaaC11AY.450.000122
N8N8SaAtaGt11AY.450.000122
N8N8delAAT---11AY.46.30.000934
N8N8IaAtaTt11AY.46.40.000165
N8N8HAatCat11AY.46.50.000198
N8N8YAatTat11AY.46.60.000072
N8N8delAAT---11AY.46.60.000072
N8N8delAAT---11AY.5.30.000337
N8N8HAatCat11AY.5.40.000277
N8N8NaaTaaC11AY.540.000095
N8N8SaAtaGt11AY.540.000095
N8N8NaaTaaC11AY.560.001605
N8N8NaaTaaC11AY.580.000907
N8N8SaAtaGt11AY.590.00053
N8N8SaAtaGt11AY.60.000041
N8N8NaaTaaC11AY.60.000041
N8N8DAatGat11AY.60.000041
N8N8IaAtaTt11AY.610.000105
N8N8HAatCat11AY.610.000105
N8N8NaaTaaC11AY.620.000436
N8N8KaaTaaA11AY.620.000436
N8N8SaAtaGt11AY.630.000387
N8N8YAatTat11AY.750.000056
N8N8NaaTaaC11AY.770.001127
N8N8IaAtaTt11AY.80.000606
N8N8DAatGat11AY.9.10.000084
N8N8TaAtaCt11AY.9.20.000037
N8N8SaAtaGt11AY.900.000684
N8N8SaAtaGt11AY.950.000761
N8N8NaaTaaC11AY.950.000761
N8N8NaaTaaC11AY.980.000079
N8N8CAAtTGt11AY.99.20.000092
N8N8DAatGat11B0.000128
N8N8delAAT---11B.1.10.000018
N8N8IaAtaTt11B.1.10.000018
N8N8KaaTaaA11B.1.10.000018
N8N8YAatTat11B.1.1.1760.000439
N8N8SaAtaGt11B.1.1.1920.002309
N8N8YAatTat11B.1.1.1920.002309
N8N8IaAtaTt11B.1.1.2070.001182
N8N8NaaTaaC11B.1.1.2140.000055
N8N8IaAtaTt11B.1.1.2140.000055
N8N8SaAtaGt11B.1.1.2200.001859
N8N8TaAtaCt11B.1.1.2240.014286
N8N8NaaTaaC11B.1.1.2410.00207
N8N8IaAtaTt11B.1.1.280.000311
N8N8NaaTaaC11B.1.1.280.000311
N8N8NaaTaaC11B.1.1.2910.000742
N8N8NaaTaaC11B.1.1.3060.000438
N8N8YAatTat11B.1.1.3060.000438
N8N8DAatGat11B.1.1.3060.000438
N8N8YAatTat11B.1.1.310.066667
N8N8DAatGat11B.1.1.3120.001912
N8N8SaAtaGt11B.1.1.3180.000302
N8N8NaaTaaC11B.1.1.330.000421
N8N8YAatTat11B.1.1.3330.001076
N8N8KaaTaaA11B.1.1.370.000193
N8N8NaaTaaC11B.1.1.390.00051
N8N8DAatGat11B.1.1.4090.002833
N8N8NaaTaaC11B.1.1.4200.001006
N8N8KaaTaaG11B.1.1.4860.001577
N8N8YAatTat11B.1.1.5190.00004
N8N8NaaTaaC11B.1.1.5230.001563
N8N8SaAtaGt11B.1.1.630.000386
N8N8YAatTat11B.1.1110.001175
N8N8NaaTaaC11B.1.1570.002985
N8N8YAatTat11B.1.1600.000031
N8N8IaAtaTt11B.1.1600.000031
N8N8DAatGat11B.1.1600.000031
N8N8NaaTaaC11B.1.160.140.002119
N8N8IaAtaTt11B.1.160.160.000929
N8N8NaaTaaC11B.1.160.160.000929
N8N8YAatTat11B.1.1770.000013
N8N8YAatTat11B.1.177.210.000076
N8N8DAatGat11B.1.177.350.000691
N8N8IaAtaTt11B.1.177.450.000381
N8N8NaaTaaC11B.1.177.570.000281
N8N8KaaTaaA11B.1.177.600.000218
N8N8CAAtTGt11B.1.177.630.002703
N8N8IaAtaTt11B.1.177.690.001484
N8N8DAatGat11B.1.20.000009
N8N8SaAtaGt11B.1.2210.000071
N8N8TaAtaCt11B.1.2210.000071
N8N8DAatGat11B.1.2210.000071
N8N8TaAtaCt11B.1.2340.000132
N8N8KaaTaaA11B.1.2340.000132
N8N8KaaTaaG11B.1.2400.000216
N8N8NaaTaaC11B.1.2430.00007
N8N8KaaTaaA11B.1.243.10.022222
N8N8YAatTat11B.1.2580.000067
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