CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 76

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N76T76InonsynaCcaTc292292128499-28501
N76T76TsynacCacT58490.84482828499-28501
N76T76TsynacCacA5880.13793128499-28501
N76T76TsynacCacG5810.017241428499-28501
N76T76AnonsynAccGcc2424128499-28501
N76T76deldelACC---1717128499-28501
N76T76SnonsynAccTcc16130.812528499-28501
N76T76SnonsynaCcaGc1620.12528499-28501
N76T76SnonsynAcCTcG1610.062528499-28501
N76T76NnonsynaCcaAc88128499-28501
N76T76LnonsynACCCTT760.85714328499-28501
N76T76LnonsynACcCTc710.14285728499-28501
N76T76PnonsynAccCcc11128499-28501
N76T76FnonsynACcTTc11128499-28501
N76T76del2delaCCa--11128499-28501

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N76T76IaCcaTc292292All0.000056
N76T76IaCcaTc129129B.1.1.2180.992308
N76T76TacCacT4958All0.000009
N76T76TacCacA858All0.000002
N76T76TacCacG158All0
N76T76IaCcaTc3333B.1.1.70.00003
N76T76AAccGcc2424All0.000005
N76T76IaCcaTc2222B.10.000202
N76T76delACC---1717All0.000003
N76T76SAccTcc1316All0.000002
N76T76SaCcaGc216All0
N76T76SAcCTcG116All0
N76T76IaCcaTc1616B.1.1.5190.000635
N76T76IaCcaTc1111P.10.000173
N76T76AAccGcc1010AY.40.000016
N76T76NaCcaAc88All0.000002
N76T76LACCCTT67All0.000001
N76T76LACcCTc17All0
N76T76SAccTcc77AY.1030.000043
N76T76TacCacT77B.1.6370.000512
N76T76IaCcaTc66AY.40.000009
N76T76TacCacT66B.1.1.2140.000333
N76T76TacCacT66B.1.1.70.000005
N76T76IaCcaTc55AY.250.00003
N76T76IaCcaTc55B.1.5960.000436
N76T76LACCCTT440.222222
N76T76IaCcaTc44AY.440.000024
N76T76IaCcaTc44B.1.1.4640.005891
N76T76TacCacT44B.1.2430.000278
N76T76IaCcaTc33AY.300.001187
N76T76TacCacT33AY.40.000005
N76T76TacCacA23B.10.000018
N76T76TacCacG13B.10.000009
N76T76TacCacT33B.1.1.2910.002227
N76T76NaCcaAc33B.1.1.70.000003
N76T76IaCcaTc33B.1.20.000026
N76T76TacCacT33B.1.20.000026
N76T76IaCcaTc33B.1.4270.000151
N76T76IaCcaTc33B.1.4290.000071
N76T76TacCacT33B.1.5260.000071
N76T76AAccGcc33B.1.617.20.000011
N76T76delACC---220.111111
N76T76SAccTcc22AY.430.000009
N76T76TacCacA22AY.430.000009
N76T76IaCcaTc22B.1.1.2840.000215
N76T76IaCcaTc22B.1.1.3370.007194
N76T76AAccGcc22B.1.177.540.001213
N76T76TacCacT22B.1.4290.000047
N76T76IaCcaTc22P.20.000373
N76T76IaCcaTc22P.30.00319
N76T76FACcTTc11All0
N76T76del2aCCa--11All0
N76T76PAccCcc11All0
N76T76TacCacA11AY.1020.000027
N76T76IaCcaTc11AY.1030.000006
N76T76AAccGcc11AY.1030.000006
N76T76IaCcaTc11AY.16.10.00047
N76T76IaCcaTc11AY.180.010101
N76T76TacCacT11AY.230.00007
N76T76NaCcaAc11AY.250.000006
N76T76SAccTcc11AY.250.000006
N76T76delACC---11AY.30.00001
N76T76IaCcaTc11AY.30.00001
N76T76IaCcaTc11AY.340.000097
N76T76NaCcaAc11AY.40.000002
N76T76PAccCcc11AY.440.000006
N76T76NaCcaAc11AY.440.000006
N76T76AAccGcc11AY.46.40.000165
N76T76AAccGcc11AY.470.000031
N76T76IaCcaTc11AY.530.000288
N76T76IaCcaTc11AY.670.000464
N76T76TacCacA11AY.690.000187
N76T76TacCacT11AY.90.000068
N76T76delACC---11AY.9.20.000037
N76T76TacCacT11AY.9.20.000037
N76T76delACC---11AZ.20.000821
N76T76SaCcaGc11B.10.000009
N76T76delACC---11B.10.000009
N76T76LACCCTT11B.1.10.000018
N76T76AAccGcc11B.1.10.000018
N76T76delACC---11B.1.10.000018
N76T76IaCcaTc11B.1.1.1390.022727
N76T76delACC---11B.1.1.1390.022727
N76T76delACC---11B.1.1.2160.00089
N76T76NaCcaAc11B.1.1.2180.007692
N76T76IaCcaTc11B.1.1.2200.001859
N76T76IaCcaTc11B.1.1.280.000311
N76T76IaCcaTc11B.1.1.2910.000742
N76T76SAccTcc11B.1.1.3560.008547
N76T76AAccGcc11B.1.1.370.000193
N76T76IaCcaTc11B.1.1.3720.000689
N76T76SaCcaGc11B.1.1.390.00051
N76T76IaCcaTc11B.1.1.4060.006494
N76T76TacCacT11B.1.1.5190.00004
N76T76delACC---11B.1.1.630.000386
N76T76delACC---11B.1.1.70.000001
N76T76AAccGcc11B.1.1.70.000001
N76T76LACCCTT11B.1.1.70.000001
N76T76IaCcaTc11B.1.1390.000733
N76T76IaCcaTc11B.1.1460.004237
N76T76IaCcaTc11B.1.1600.000031
N76T76TacCacT11B.1.1600.000031
N76T76IaCcaTc11B.1.160.160.000929
N76T76TacCacT11B.1.1770.000013
N76T76IaCcaTc11B.1.1770.000013
N76T76AAccGcc11B.1.177.210.000076
N76T76IaCcaTc11B.1.177.310.011494
N76T76delACC---11B.1.177.630.002703
N76T76IaCcaTc11B.1.177.70.000165
N76T76del2aCCa--11B.1.20.000009
N76T76TacCacT11B.1.2400.000216
N76T76IaCcaTc11B.1.2400.000216
N76T76AAccGcc11B.1.2430.00007
N76T76TacCacT11B.1.3110.000275
N76T76SAccTcc11B.1.3250.006897
N76T76IaCcaTc11B.1.3290.000608
N76T76TacCacA11B.1.351.50.0006
N76T76IaCcaTc11B.1.36.260.002857
N76T76IaCcaTc11B.1.4090.000781
N76T76delACC---11B.1.4150.014286
N76T76delACC---11B.1.4270.00005
N76T76SAccTcc11B.1.438.10.000107
N76T76delACC---11B.1.4390.005917
N76T76TacCacT11B.1.4530.003236
N76T76TacCacA11B.1.4970.000315
N76T76IaCcaTc11B.1.5260.000024
N76T76AAccGcc11B.1.5260.000024
N76T76IaCcaTc11B.1.5820.000491
N76T76IaCcaTc11B.1.5950.000261
N76T76NaCcaAc11B.1.617.20.000004
N76T76LACcCTc11B.1.617.20.000004
N76T76IaCcaTc11B.1.617.20.000004
N76T76FACcTTc11B.1.617.30.002985
N76T76IaCcaTc11B.1.6210.000089
N76T76SAcCTcG11B.1.6210.000089
N76T76IaCcaTc11B.390.002331
N76T76IaCcaTc11C.370.000116
N76T76TacCacT11C.370.000116
N76T76TacCacT11D.20.000075
N76T76IaCcaTc11D.20.000075
N76T76delACC---11P.10.000016
N76T76TacCacT11P.10.000016
N76T76IaCcaTc11P.1.10.000318
N76T76IaCcaTc11P.1.140.000048
N76T76IaCcaTc11P.1.150.000232
N76T76delACC---11Q.20.000613
N76T76IaCcaTc11Q.80.000165
N76T76IaCcaTc11R.10.00009