CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 7

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N7Q7KnonsynCaaAaa45484548128292-28294
N7Q7HnonsyncaAcaT4122170.52669928292-28294
N7Q7HnonsyncaAcaC4121950.47330128292-28294
N7Q7RnonsyncAacGa4054040.99753128292-28294
N7Q7RnonsyncAAcGT40510.0024691428292-28294
N7Q7LnonsyncAacTa1161110.95689728292-28294
N7Q7LnonsyncAAcTT11650.043103428292-28294
N7Q7PnonsyncAacCa113113128292-28294
N7Q7QsyncaAcaG109109128292-28294
N7Q7deldelCAA---3636128292-28294
N7Q7XnonsynCaaTaa1290.7528292-28294
N7Q7XnonsynCaATaG1230.2528292-28294
N7Q7del1delcAac-a66128292-28294
N7Q7DnonsynCaAGaC66128292-28294
N7Q7EnonsynCaaGaa55128292-28294
N7Q7del2delcAAc--540.828292-28294
N7Q7del2delCAa--a510.228292-28294
N7Q7VnonsynCAaGTa22128292-28294
N7Q7WnonsynCAATGG11128292-28294
N7Q7NnonsynCaAAaT11128292-28294
N7Q7CnonsynCAATGT11128292-28294

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N7Q7KCaaAaa45484548All0.00087
N7Q7KCaaAaa16421642B.1.36.360.988561
N7Q7KCaaAaa463463AY.40.000721
N7Q7HcaAcaT217412All0.000042
N7Q7HcaAcaC195412All0.000037
N7Q7RcAacGa404405All0.000077
N7Q7RcAAcGT1405All0
N7Q7KCaaAaa396396AY.60.016287
N7Q7RcAacGa170170B.1.2580.011313
N7Q7KCaaAaa159159B.1.1600.004959
N7Q7KCaaAaa137137A0.053019
N7Q7KCaaAaa125125B.1.1.70.000112
N7Q7LcAacTa111116All0.000021
N7Q7LcAAcTT5116All0.000001
N7Q7PcAacCa113113All0.000022
N7Q7KCaaAaa111111AY.1030.000689
N7Q7QcaAcaG109109All0.000021
N7Q7KCaaAaa108108AY.30.001074
N7Q7KCaaAaa108108B.1.617.20.000407
N7Q7KCaaAaa9797B.1.5960.008452
N7Q7PcAacCa8888R.10.007921
N7Q7KCaaAaa8383AY.260.00235
N7Q7RcAacGa7474B.1.3240.11878
N7Q7KCaaAaa7070B.1.20.000616
N7Q7HcaAcaC4357B.1.20.000379
N7Q7HcaAcaT1457B.1.20.000123
N7Q7KCaaAaa5252B.10.000476
N7Q7KCaaAaa4848B.1.1770.000632
N7Q7HcaAcaC3444B.1.617.20.000128
N7Q7HcaAcaT1044B.1.617.20.000038
N7Q7HcaAcaT4143AY.1030.000255
N7Q7HcaAcaC243AY.1030.000012
N7Q7HcaAcaC4040B.1.1420.115942
N7Q7KCaaAaa3939B.1.177.160.025914
N7Q7KCaaAaa3737C.191
N7Q7delCAA---3636All0.000007
N7Q7KCaaAaa3636B.1.6370.002631
N7Q7KCaaAaa3535B.1.3510.00104
N7Q7KCaaAaa3434B.1.10.000617
N7Q7LcAacTa3131B.1.1.70.000028
N7Q7HcaAcaT1828AY.40.000028
N7Q7HcaAcaC1028AY.40.000016
N7Q7HcaAcaT2828B.1.1.500.019009
N7Q7KCaaAaa2828B.1.5260.000658
N7Q7KCaaAaa2727AY.250.000162
N7Q7HcaAcaT2727B.1.1.70.000024
N7Q7KCaaAaa2626B.1.1.2220.005304
N7Q7KCaaAaa2626B.1.1.3110.009312
N7Q7KCaaAaa2323AY.440.00014
N7Q7KCaaAaa2323B.1.2210.001634
N7Q7HcaAcaT2323B.1.3240.036918
N7Q7KCaaAaa2222AY.330.001469
N7Q7RcAacGa2222P.20.004106
N7Q7KCaaAaa2121AY.50.000434
N7Q7KCaaAaa1818B.1.4290.000424
N7Q7HcaAcaC1515AY.1020.000398
N7Q7HcaAcaC1515AY.420.000603
N7Q7KCaaAaa1515B.1.360.002189
N7Q7KCaaAaa1414AY.4.20.000304
N7Q7KCaaAaa1414B.1.177.810.002651
N7Q7KCaaAaa1414B.1.2820.208955
N7Q7KCaaAaa1313AY.390.000321
N7Q7HcaAcaT713B.1.10.000127
N7Q7HcaAcaC613B.1.10.000109
N7Q7LcAacTa1313B.1.177.600.00284
N7Q7XCaaTaa912All0.000002
N7Q7XCaATaG312All0.000001
N7Q7LcAacTa1212B.1.1.2980.010345
N7Q7QcaAcaG1212B.1.6270.024242
N7Q7KCaaAaa1111AD.20.002409
N7Q7KCaaAaa1111AY.430.000049
N7Q7QcaAcaG1111AY.440.000067
N7Q7HcaAcaC911B.10.000082
N7Q7HcaAcaT211B.10.000018
N7Q7KCaaAaa1111B.1.1.5190.000437
N7Q7KCaaAaa1111B.1.2430.000765
N7Q7KCaaAaa1010B.1.6210.000885
N7Q7KCaaAaa1010P.1.140.000478
N7Q7KCaaAaa99AY.200.00035
N7Q7delCAA---99AY.99.20.000829
N7Q7KCaaAaa99B.1.1.10.00294
N7Q7RcAacGa99B.1.1.2630.014019
N7Q7KCaaAaa99B.1.1.280.002801
N7Q7RcAacGa99B.1.617.20.000034
N7Q7KCaaAaa99B.1.9.40.055215
N7Q7KCaaAaa88AY.230.000558
N7Q7KCaaAaa88AY.470.000249
N7Q7RcAacGa88B.1.10.000145
N7Q7QcaAcaG88B.1.1.70.000007
N7Q7QcaAcaG88B.1.20.00007
N7Q7QcaAcaG88B.1.3510.000238
N7Q7RcAacGa77AY.260.000198
N7Q7PcAacCa77AY.30.00007
N7Q7KCaaAaa77AY.350.001631
N7Q7QcaAcaG77AY.40.000011
N7Q7LcAacTa77AY.40.000011
N7Q7QcaAcaG77AY.430.000031
N7Q7KCaaAaa77B.1.2340.000924
N7Q7KCaaAaa66A.20.003971
N7Q7DCaAGaC66All0.000001
N7Q7del1cAac-a66All0.000001
N7Q7KCaaAaa66AY.1000.000276
N7Q7PcAacCa66AY.1030.000037
N7Q7KCaaAaa66AY.1160.001721
N7Q7QcaAcaG66AY.260.00017
N7Q7KCaaAaa66AY.5.30.002024
N7Q7KCaaAaa66AY.530.001725
N7Q7QcaAcaG66B.10.000055
N7Q7KCaaAaa66B.1.1.2160.005343
N7Q7KCaaAaa66B.1.36.80.006
N7Q7RcAacGa66B.1.4410.057692
N7Q7RcAacGa66B.1.6210.000531
N7Q7KCaaAaa55A.10.001409
N7Q7KCaaAaa55A.23.10.003521
N7Q7ECaaGaa55All0.000001
N7Q7del2cAAc--45All0.000001
N7Q7del2CAa--a15All0
N7Q7RcAacGa55AY.30.00005
N7Q7RcAacGa55AY.40.000008
N7Q7KCaaAaa55AY.400.004822
N7Q7delCAA---55AY.430.000022
N7Q7RcAacGa55AY.670.002321
N7Q7RcAacGa55B.10.000046
N7Q7KCaaAaa55B.1.1.3170.002058
N7Q7KCaaAaa55B.1.1.390.002548
N7Q7RcAacGa55B.1.20.000044
N7Q7LcAacTa45B.1.20.000035
N7Q7LcAAcTT15B.1.20.000009
N7Q7KCaaAaa55B.1.3110.001373
N7Q7RcAacGa55B.1.351.50.002998
N7Q7KCaaAaa55B.1.4270.000252
N7Q7HcaAcaT35B.1.5960.000261
N7Q7HcaAcaC25B.1.5960.000174
N7Q7DCaAGaC55P.10.000079
N7Q7KCaaAaa44AY.1020.000106
N7Q7HcaAcaT44AY.116.10.001246
N7Q7KCaaAaa44AY.1180.000251
N7Q7RcAacGa44AY.1190.000141
N7Q7KCaaAaa44AY.1200.000149
N7Q7HcaAcaT34AY.1200.000112
N7Q7HcaAcaC14AY.1200.000037
N7Q7HcaAcaT44AY.290.000063
N7Q7KCaaAaa44AY.290.000063
N7Q7LcAAcTT44AY.30.00004
N7Q7KCaaAaa44AY.340.000388
N7Q7RcAacGa44AY.380.001997
N7Q7KCaaAaa44AY.450.000487
N7Q7KCaaAaa44AY.750.000224
N7Q7KCaaAaa44AY.9.20.000147
N7Q7KCaaAaa44AY.98.10.000194
N7Q7KCaaAaa44B.1.1.2070.004728
N7Q7LcAacTa44B.1.1.2140.000222
N7Q7KCaaAaa44B.1.1.3700.050633
N7Q7RcAacGa44B.1.1770.000053
N7Q7KCaaAaa44B.1.177.510.018265
N7Q7QcaAcaG44B.1.5950.001044
N7Q7KCaaAaa44B.1.5970.018519
N7Q7KCaaAaa44B.1.6280.001409
N7Q7RcAacGa44B.260.058824
N7Q7KCaaAaa44P.10.000063
N7Q7delCAA---44P.10.000063
N7Q7PcAacCa44P.10.000063
N7Q7KCaaAaa33AY.10.001187
N7Q7KCaaAaa33AY.1110.000549
N7Q7KCaaAaa33AY.1190.000106
N7Q7KCaaAaa33AY.16.10.00141
N7Q7KCaaAaa33AY.20.001068
N7Q7QcaAcaG33AY.200.000117
N7Q7HcaAcaT33AY.200.000117
N7Q7LcAacTa33AY.250.000018
N7Q7KCaaAaa33AY.29.10.000662
N7Q7KCaaAaa33AY.360.000445
N7Q7KCaaAaa33AY.39.10.000119
N7Q7QcaAcaG33AY.4.20.000065
N7Q7LcAacTa33AY.430.000013
N7Q7LcAacTa33AY.440.000018
N7Q7RcAacGa33AY.440.000018
N7Q7KCaaAaa33AY.460.000312
N7Q7KCaaAaa33AY.46.40.000494
N7Q7KCaaAaa33AY.540.000286
N7Q7KCaaAaa33AY.740.000347
N7Q7QcaAcaG33AY.9.20.00011
N7Q7KCaaAaa33B.1.1.2840.000322
N7Q7RcAacGa33B.1.1.5190.000119
N7Q7delCAA---33B.1.1.70.000003
N7Q7KCaaAaa33B.1.177.720.010169
N7Q7KCaaAaa33B.1.351.30.002629
N7Q7HcaAcaT23B.1.4290.000047
N7Q7HcaAcaC13B.1.4290.000024
N7Q7KCaaAaa33B.1.438.10.000322
N7Q7KCaaAaa33B.1.466.20.001174
N7Q7KCaaAaa33B.1.4900.3
N7Q7RcAacGa33B.3.10.004975
N7Q7QcaAcaG33C.180.007772
N7Q7KCaaAaa33C.36.30.001702
N7Q7KCaaAaa33C.370.000348
N7Q7KCaaAaa33D.20.000225
N7Q7HcaAcaT33P.10.000047
N7Q7KCaaAaa33R.10.00027
N7Q7VCAaGTa22All0
N7Q7RcAacGa22AU.20.004843
N7Q7KCaaAaa22AY.1060.00067
N7Q7KCaaAaa22AY.1170.000169
N7Q7KCaaAaa22AY.120.000632
N7Q7HcaAcaT22AY.1210.000271
N7Q7KCaaAaa22AY.130.000322
N7Q7KCaaAaa22AY.190.002281
N7Q7LcAacTa22AY.230.000139
N7Q7HcaAcaT12AY.250.000006
N7Q7HcaAcaC12AY.250.000006
N7Q7HcaAcaC22AY.260.000057
N7Q7KCaaAaa22AY.300.000791
N7Q7HcaAcaT22AY.330.000134
N7Q7KCaaAaa22AY.380.000999
N7Q7KCaaAaa22AY.420.00008
N7Q7RcAacGa22AY.430.000009
N7Q7HcaAcaC22AY.440.000012
N7Q7delCAA---22AY.460.000208
N7Q7KCaaAaa22AY.610.00021
N7Q7QcaAcaG22AY.610.00021
N7Q7KCaaAaa22AY.630.000774
N7Q7KCaaAaa22AY.940.000885
N7Q7HcaAcaT12AY.98.10.000048
N7Q7HcaAcaC12AY.98.10.000048
N7Q7KCaaAaa22AY.99.20.000184
N7Q7KCaaAaa22AZ.10.001735
N7Q7KCaaAaa22AZ.20.001642
N7Q7KCaaAaa22B0.000256
N7Q7KCaaAaa22B.1.1.2140.000111
N7Q7KCaaAaa22B.1.1.250.001137
N7Q7KCaaAaa22B.1.1.330.000842
N7Q7HcaAcaT22B.1.1.3480.001592
N7Q7KCaaAaa22B.1.1.370.000386
N7Q7HcaAcaT22B.1.1.390.001019
N7Q7del1cAac-a22B.1.1.70.000002
N7Q7PcAacCa22B.1.1.70.000002
N7Q7KCaaAaa22B.1.1.700.000682
N7Q7HcaAcaT22B.1.1770.000026
N7Q7KCaaAaa22B.1.177.210.000153
N7Q7KCaaAaa22B.1.177.650.001331
N7Q7KCaaAaa22B.1.177.800.003824
N7Q7KCaaAaa22B.1.221.10.005814
N7Q7LcAacTa22B.1.2580.000133
N7Q7KCaaAaa22B.1.2580.000133
N7Q7KCaaAaa22B.1.258.170.000208
N7Q7KCaaAaa22B.1.4000.000858
N7Q7KCaaAaa22B.1.4050.024691
N7Q7RcAacGa22B.1.4220.001625
N7Q7QcaAcaG22B.1.4290.000047
N7Q7KCaaAaa22B.1.4530.006472
N7Q7LcAacTa22B.1.5260.000047
N7Q7KCaaAaa22B.1.5610.000794
N7Q7KCaaAaa22B.1.617.10.000258
N7Q7HcaAcaC22B.1.617.10.000258
N7Q7QcaAcaG22B.1.617.20.000008
N7Q7KCaaAaa22C.160.002121
N7Q7RcAacGa22C.260.014706
N7Q7RcAacGa22C.370.000232
N7Q7HcaAcaC22N.40.008511
N7Q7KCaaAaa22N.60.014184
N7Q7VCAaGTa22P.10.000032
N7Q7del2cAAc--22P.10.000032
N7Q7KCaaAaa22P.20.000373
N7Q7QcaAcaG22P.30.00319
N7Q7RcAacGa22Q.10.000253
N7Q7LcAacTa22Q.80.00033
N7Q7HcaAcaT11A.180.05
N7Q7HcaAcaT11A.2.40.003367
N7Q7KCaaAaa11A.2.50.000499
N7Q7NCaAAaT11All0
N7Q7WCAATGG11All0
N7Q7CCAATGT11All0
N7Q7KCaaAaa11AU.10.001266
N7Q7delCAA---11AY.1000.000046
N7Q7RcAacGa11AY.1010.00049
N7Q7delCAA---11AY.1010.00049
N7Q7LcAacTa11AY.1030.000006
N7Q7RcAacGa11AY.1030.000006
N7Q7HcaAcaC11AY.1050.000643
N7Q7KCaaAaa11AY.1070.000466
N7Q7KCaaAaa11AY.1090.00074
N7Q7KCaaAaa11AY.1100.000113
N7Q7KCaaAaa11AY.116.10.000311
N7Q7ECaaGaa11AY.1180.000063
N7Q7HcaAcaC11AY.1190.000035
N7Q7RcAacGa11AY.1200.000037
N7Q7ECaaGaa11AY.1200.000037
N7Q7del2CAa--a11AY.120.10.000321
N7Q7KCaaAaa11AY.120.20.001285
N7Q7KCaaAaa11AY.1210.000135
N7Q7KCaaAaa11AY.160.00038
N7Q7LcAacTa11AY.200.000039
N7Q7delCAA---11AY.230.00007
N7Q7RcAacGa11AY.250.000006
N7Q7KCaaAaa11AY.270.000065
N7Q7PcAacCa11AY.290.000016
N7Q7LcAacTa11AY.290.000016
N7Q7QcaAcaG11AY.290.000016
N7Q7KCaaAaa11AY.3.10.000085
N7Q7delCAA---11AY.330.000067
N7Q7KCaaAaa11AY.370.000316
N7Q7RcAacGa11AY.390.000025
N7Q7QcaAcaG11AY.39.10.00004
N7Q7RcAacGa11AY.4.20.000022
N7Q7KCaaAaa11AY.4.2.10.000149
N7Q7QcaAcaG11AY.4.40.000409
N7Q7delCAA---11AY.4.40.000409
N7Q7KCaaAaa11AY.410.000294
N7Q7HcaAcaT11AY.430.000004
N7Q7delCAA---11AY.440.000006
N7Q7RcAacGa11AY.450.000122
N7Q7delCAA---11AY.46.30.000934
N7Q7RcAacGa11AY.46.40.000165
N7Q7KCaaAaa11AY.46.50.000198
N7Q7delCAA---11AY.46.60.000072
N7Q7RcAacGa11AY.50.000021
N7Q7delCAA---11AY.5.30.000337
N7Q7QcaAcaG11AY.560.001605
N7Q7HcaAcaT11AY.580.000907
N7Q7KCaaAaa11AY.580.000907
N7Q7KCaaAaa11AY.590.00053
N7Q7RcAacGa11AY.60.000041
N7Q7LcAacTa11AY.610.000105
N7Q7XCaaTaa11AY.620.000436
N7Q7KCaaAaa11AY.680.000274
N7Q7HcaAcaT11AY.690.000187
N7Q7KCaaAaa11AY.70.000196
N7Q7KCaaAaa11AY.700.000209
N7Q7KCaaAaa11AY.75.10.00018
N7Q7HcaAcaT11AY.75.10.00018
N7Q7KCaaAaa11AY.760.004831
N7Q7KCaaAaa11AY.800.001129
N7Q7KCaaAaa11AY.850.000427
N7Q7KCaaAaa11AY.870.000833
N7Q7KCaaAaa11AY.880.000884
N7Q7KCaaAaa11AY.90.000068
N7Q7KCaaAaa11AY.9.10.000084
N7Q7RcAacGa11AY.9.20.000037
N7Q7KCaaAaa11AY.910.00073
N7Q7PcAacCa11AY.920.000287
N7Q7HcaAcaC11AY.920.000287
N7Q7KCaaAaa11AY.920.000287
N7Q7HcaAcaC11B0.000128
N7Q7ECaaGaa11B.10.000009
N7Q7XCaaTaa11B.10.000009
N7Q7LcAacTa11B.1.10.000018
N7Q7delCAA---11B.1.10.000018
N7Q7KCaaAaa11B.1.1.100.001115
N7Q7KCaaAaa11B.1.1.1210.002427
N7Q7KCaaAaa11B.1.1.130.035714
N7Q7KCaaAaa11B.1.1.1530.001095
N7Q7RcAacGa11B.1.1.1570.000913
N7Q7LcAacTa11B.1.1.1860.003436
N7Q7ECaaGaa11B.1.1.2100.005714
N7Q7RcAacGa11B.1.1.2140.000055
N7Q7RcAacGa11B.1.1.2160.00089
N7Q7HcaAcaC11B.1.1.2160.00089
N7Q7KCaaAaa11B.1.1.2770.000759
N7Q7RcAacGa11B.1.1.2910.000742
N7Q7RcAacGa11B.1.1.2940.001266
N7Q7KCaaAaa11B.1.1.2970.002237
N7Q7KCaaAaa11B.1.1.3040.002809
N7Q7KCaaAaa11B.1.1.3060.000438
N7Q7KCaaAaa11B.1.1.3100.015152
N7Q7KCaaAaa11B.1.1.3120.001912
N7Q7KCaaAaa11B.1.1.3180.000302
N7Q7KCaaAaa11B.1.1.3480.000796
N7Q7KCaaAaa11B.1.1.3510.002793
N7Q7LcAacTa11B.1.1.3540.004386
N7Q7RcAacGa11B.1.1.3680.003086
N7Q7KCaaAaa11B.1.1.3890.006061
N7Q7RcAacGa11B.1.1.4090.002833
N7Q7KCaaAaa11B.1.1.4340.000349
N7Q7RcAacGa11B.1.1.4850.016667
N7Q7LcAacTa11B.1.1.4870.005587
N7Q7LcAacTa11B.1.1.5190.00004
N7Q7KCaaAaa11B.1.1.5250.005464
N7Q7KCaaAaa11B.1.1.630.000386
N7Q7del2cAAc--11B.1.1.70.000001
N7Q7XCaaTaa11B.1.1.70.000001
N7Q7KCaaAaa11B.1.1100.004525
N7Q7KCaaAaa11B.1.1110.001175
N7Q7KCaaAaa11B.1.1570.002985
N7Q7XCaaTaa11B.1.1570.002985
N7Q7XCaaTaa11B.1.160.160.000929
N7Q7KCaaAaa11B.1.160.300.002976
N7Q7LcAacTa11B.1.160.80.001289
N7Q7LcAacTa11B.1.1770.000013
N7Q7KCaaAaa11B.1.177.120.000152
N7Q7KCaaAaa11B.1.177.40.000211
N7Q7KCaaAaa11B.1.177.440.000519
N7Q7CCAATGT11B.1.177.630.002703
N7Q7XCaaTaa11B.1.177.830.001481
N7Q7RcAacGa11B.1.177.860.000183
N7Q7KCaaAaa11B.1.177.860.000183
N7Q7KCaaAaa11B.1.1950.005025
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