CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 67

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	67	P67S		nonsyn	Cct	Tct	126448	126441	0.999945	28472-28474
N	67	P67S		nonsyn	CcT	TcC	126448	4	0.0000316336	28472-28474
N	67	P67S		nonsyn	CcT	TcG	126448	2	0.0000158168	28472-28474
N	67	P67S		nonsyn	CcT	TcA	126448	1	0.00000790839	28472-28474
N	67	P67L		nonsyn	cCt	cTt	2641	2631	0.996214	28472-28474
N	67	P67L		nonsyn	cCT	cTC	2641	8	0.00302916	28472-28474
N	67	P67L		nonsyn	cCT	cTG	2641	2	0.000757289	28472-28474
N	67	P67P		syn	ccT	ccC	1103	782	0.708975	28472-28474
N	67	P67P		syn	ccT	ccA	1103	263	0.238441	28472-28474
N	67	P67P		syn	ccT	ccG	1103	58	0.0525839	28472-28474
N	67	P67H		nonsyn	cCt	cAt	481	480	0.997921	28472-28474
N	67	P67H		nonsyn	cCT	cAC	481	1	0.002079	28472-28474
N	67	P67R		nonsyn	cCt	cGt	190	187	0.984211	28472-28474
N	67	P67R		nonsyn	cCT	cGA	190	2	0.0105263	28472-28474
N	67	P67R		nonsyn	cCT	cGC	190	1	0.00526316	28472-28474
N	67	P67T		nonsyn	Cct	Act	134	134	1	28472-28474
N	67	P67F		nonsyn	CCt	TTt	90	90	1	28472-28474
N	67	P67A		nonsyn	Cct	Gct	31	28	0.903226	28472-28474
N	67	P67A		nonsyn	CcT	GcG	31	2	0.0645161	28472-28474
N	67	P67A		nonsyn	CcT	GcA	31	1	0.0322581	28472-28474
N	67	P67del		del	CCT	---	23	23	1	28472-28474
N	67	P67Y		nonsyn	CCt	TAt	8	8	1	28472-28474
N	67	P67V		nonsyn	CCt	GTt	3	2	0.666667	28472-28474
N	67	P67V		nonsyn	CCT	GTA	3	1	0.333333	28472-28474
N	67	P67C		nonsyn	CCt	TGt	2	2	1	28472-28474
N	67	P67D		nonsyn	CCt	GAt	2	2	1	28472-28474
N	67	P67E		nonsyn	CCT	GAA	1	1	1	28472-28474
N	67	P67Q		nonsyn	cCT	cAA	1	1	1	28472-28474
N	67	P67G		nonsyn	CCT	GGA	1	1	1	28472-28474

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	67	P67S	Cct	Tct	126441	126448	All	0.024183
N	67	P67S	CcT	TcC	4	126448	All	0.000001
N	67	P67S	CcT	TcG	2	126448	All	0
N	67	P67S	CcT	TcA	1	126448	All	0
N	67	P67S	Cct	Tct	110301	110307	B.1.2	0.971242
N	67	P67S	CcT	TcC	3	110307	B.1.2	0.000026
N	67	P67S	CcT	TcG	2	110307	B.1.2	0.000018
N	67	P67S	CcT	TcA	1	110307	B.1.2	0.000009
N	67	P67S	Cct	Tct	10133	10133	B.1.596	0.882973
N	67	P67L	cCt	cTt	2631	2641	All	0.000503
N	67	P67L	cCT	cTC	8	2641	All	0.000002
N	67	P67L	cCT	cTG	2	2641	All	0
N	67	P67S	Cct	Tct	2462	2462	B.1	0.022551
N	67	P67P	ccT	ccC	782	1103	All	0.00015
N	67	P67P	ccT	ccA	263	1103	All	0.00005
N	67	P67P	ccT	ccG	58	1103	All	0.000011
N	67	P67L	cCt	cTt	961	961	B.1.1.7	0.00086
N	67	P67H	cCt	cAt	480	481	All	0.000092
N	67	P67H	cCT	cAC	1	481	All	0
N	67	P67S	Cct	Tct	395	395	B.1.1.7	0.000354
N	67	P67S	Cct	Tct	327	327	B.1.617.3	0.976119
N	67	P67S	Cct	Tct	246	246	AH.3	0.935361
N	67	P67L	cCt	cTt	244	244	B.1.177.81	0.046195
N	67	P67S	Cct	Tct	203	203	B.1.561	0.080588
N	67	P67R	cCt	cGt	187	190	All	0.000036
N	67	P67R	cCT	cGA	2	190	All	0
N	67	P67R	cCT	cGC	1	190	All	0
N	67	P67H	cCt	cAt	188	188	AD.2	0.041165
N	67	P67S	Cct	Tct	187	187	B.1.1	0.003392
N	67	P67P	ccT	ccC	168	176	AY.4	0.000261
N	67	P67P	ccT	ccG	4	176	AY.4	0.000006
N	67	P67P	ccT	ccA	4	176	AY.4	0.000006
N	67	P67P	ccT	ccA	127	170	AY.3	0.001263
N	67	P67P	ccT	ccC	42	170	AY.3	0.000418
N	67	P67P	ccT	ccG	1	170	AY.3	0.00001
N	67	P67R	cCt	cGt	155	155	B.1.609	0.074305
N	67	P67P	ccT	ccC	143	143	B.1.1.214	0.00793
N	67	P67S	Cct	Tct	136	136	AY.43	0.000603
N	67	P67T	Cct	Act	134	134	All	0.000026
N	67	P67S	Cct	Tct	121	121	B.1.595	0.031576
N	67	P67L	cCt	cTt	113	113	B.1.617.2	0.000425
N	67	P67L	cCt	cTt	108	108	B.1.351	0.00321
N	67	P67S	Cct	Tct	107	107	B.1.527	0.396296
N	67	P67S	Cct	Tct	93	93	AY.25	0.000559
N	67	P67F	CCt	TTt	90	90	All	0.000017
N	67	P67L	cCt	cTt	88	88	B.1.36.18	0.036975
N	67	P67F	CCt	TTt	87	87	B.1.2	0.000766
N	67	P67P	ccT	ccC	63	80	B.1.1.7	0.000056
N	67	P67P	ccT	ccG	14	80	B.1.1.7	0.000013
N	67	P67P	ccT	ccA	3	80	B.1.1.7	0.000003
N	67	P67S	Cct	Tct	79	79	B.1.617.2	0.000297
N	67	P67L	cCt	cTt	78	78	AY.4	0.000121
N	67	P67S	Cct	Tct	68	68	B.1.621	0.006019
N	67	P67L	cCt	cTt	67	67	AY.5	0.001383
N	67	P67S	Cct	Tct	60	60	AY.3	0.000597
N	67	P67L	cCt	cTt	58	58	B.1.177.43	0.085672
N	67	P67P	ccT	ccC	30	57	B.1.617.2	0.000113
N	67	P67P	ccT	ccA	24	57	B.1.617.2	0.00009
N	67	P67P	ccT	ccG	3	57	B.1.617.2	0.000011
N	67	P67S	Cct	Tct	56	56	AY.44	0.000341
N	67	P67S	Cct	Tct	48	48	AY.4	0.000075
N	67	P67L	cCt	cTt	47	47	AY.103	0.000292
N	67	P67S	Cct	Tct	47	47	B.1.429	0.001106
N	67	P67S	Cct	Tct	46	46	B.1.580	0.186992
N	67	P67S	Cct	Tct	44	44	B.1.177	0.000579
N	67	P67P	ccT	ccC	43	43	AY.47	0.001338
N	67	P67L	cCt	cTt	42	42	AY.43	0.000186
N	67	P67L	cCt	cTt	42	42	B.1.177	0.000553
N	67	P67S	Cct	Tct	42	42	B.1.177.73	0.023783
N	67	P67L	cCt	cTt	42	42	B.1.221	0.002983
N	67	P67S	Cct	Tct	42	42	B.1.234	0.005542
N	67	P67S	Cct	Tct	42	42	B.1.258.23	1
N	67	P67L	cCt	cTt	42	42	B.1.526	0.000987
N	67	P67L	cCt	cTt	35	41	B.1.1.519	0.00139
N	67	P67L	cCT	cTC	6	41	B.1.1.519	0.000238
N	67	P67S	Cct	Tct	40	40	B.1.1.519	0.001588
N	67	P67P	ccT	ccA	40	40	B.1.177.86	0.007338
N	67	P67S	Cct	Tct	40	40	C.23	0.232558
N	67	P67L	cCt	cTt	37	37	P.1	0.000583
N	67	P67T	Cct	Act	35	35	B.1	0.000321
N	67	P67S	Cct	Tct	35	35	B.1.221	0.002486
N	67	P67L	cCt	cTt	35	35	P.1.10	0.009431
N	67	P67L	cCt	cTt	34	34	AY.44	0.000207
N	67	P67L	cCt	cTt	33	33	AY.25	0.000198
N	67	P67H	cCt	cAt	33	33	B.1.1.7	0.00003
N	67	P67A	Cct	Gct	28	31	All	0.000005
N	67	P67A	CcT	GcG	2	31	All	0
N	67	P67A	CcT	GcA	1	31	All	0
N	67	P67P	ccT	ccC	31	31	AY.70	0.006464
N	67	P67S	Cct	Tct	31	31	P.1.17	0.005015
N	67	P67S	Cct	Tct	30	30	AY.116.1	0.009343
N	67	P67L	cCt	cTt	30	30	B.1	0.000275
N	67	P67H	cCt	cAt	30	30	B.1.617.2	0.000113
N	67	P67H	cCt	cAt	29	29	AY.109	0.02145
N	67	P67S	Cct	Tct	29	29	AY.45	0.003529
N	67	P67H	cCt	cAt	29	29	P.1	0.000457
N	67	P67S	Cct	Tct	28	28	AY.36	0.00415
N	67	P67S	Cct	Tct	26	26	AY.103	0.000161
N	67	P67S	Cct	Tct	26	26	AY.26	0.000736
N	67	P67H	cCt	cAt	26	26	AY.4.2	0.000564
N	67	P67S	Cct	Tct	25	25	B.1.243	0.00174
N	67	P67P	ccT	ccC	22	24	AY.44	0.000134
N	67	P67P	ccT	ccA	2	24	AY.44	0.000012
N	67	P67del	CCT	---	23	23	All	0.000004
N	67	P67S	Cct	Tct	23	23	B.1.1.335	0.298701
N	67	P67S	Cct	Tct	23	23	B.1.369	0.00656
N	67	P67S	Cct	Tct	23	23	B.1.400	0.009867
N	67	P67L	cCt	cTt	22	22	AY.102	0.000583
N	67	P67L	cCt	cTt	21	22	B.1.160	0.000655
N	67	P67L	cCT	cTC	1	22	B.1.160	0.000031
N	67	P67P	ccT	ccC	22	22	B.1.177.18	0.025522
N	67	P67L	cCt	cTt	22	22	B.1.177.51	0.100457
N	67	P67L	cCt	cTt	21	21	AY.3	0.000209
N	67	P67S	Cct	Tct	21	21	P.1	0.000331
N	67	P67T	Cct	Act	19	19	B.1.1.7	0.000017
N	67	P67S	Cct	Tct	19	19	B.1.111	0.022327
N	67	P67S	Cct	Tct	19	19	P.1.14	0.000908
N	67	P67P	ccT	ccC	17	18	AY.25	0.000102
N	67	P67P	ccT	ccG	1	18	AY.25	0.000006
N	67	P67L	cCt	cTt	18	18	B.1.1	0.000327
N	67	P67T	Cct	Act	17	17	AY.5	0.000351
N	67	P67S	Cct	Tct	16	16	AY.29	0.000252
N	67	P67H	cCt	cAt	16	16	AY.4	0.000025
N	67	P67L	cCt	cTt	16	16	Q.1	0.002021
N	67	P67L	cCt	cTt	15	15	AY.75	0.00084
N	67	P67P	ccT	ccC	14	15	P.1	0.000221
N	67	P67P	ccT	ccG	1	15	P.1	0.000016
N	67	P67S	Cct	Tct	14	14	B.1.1.241	0.028986
N	67	P67L	cCt	cTt	14	14	B.1.1.63	0.005401
N	67	P67S	Cct	Tct	14	14	B.1.206	0.011419
N	67	P67S	Cct	Tct	14	14	B.1.258	0.000932
N	67	P67S	Cct	Tct	14	14	B.1.361	0.018041
N	67	P67S	Cct	Tct	14	14	B.1.396	0.00988
N	67	P67S	Cct	Tct	14	14	B.1.427	0.000707
N	67	P67H	cCt	cAt	13	13	AY.6	0.000535
N	67	P67P	ccT	ccC	13	13	B.1.1.306	0.005699
N	67	P67L	cCt	cTt	13	13	B.1.36.22	0.0157
N	67	P67S	Cct	Tct	13	13	B.1.564	0.005537
N	67	P67L	cCt	cTt	12	12	AY.100	0.000552
N	67	P67P	ccT	ccC	12	12	B.1.1.28	0.003735
N	67	P67S	Cct	Tct	12	12	B.1.311	0.003295
N	67	P67S	Cct	Tct	12	12	B.1.577	0.008247
N	67	P67P	ccT	ccG	5	11	AY.103	0.000031
N	67	P67P	ccT	ccC	5	11	AY.103	0.000031
N	67	P67P	ccT	ccA	1	11	AY.103	0.000006
N	67	P67H	cCt	cAt	11	11	AY.44	0.000067
N	67	P67L	cCt	cTt	11	11	AY.46.5	0.002183
N	67	P67L	cCt	cTt	11	11	B.1.1.176	0.004833
N	67	P67L	cCt	cTt	11	11	B.1.1.214	0.00061
N	67	P67L	cCt	cTt	11	11	B.1.36.38	0.018062
N	67	P67S	Cct	Tct	11	11	B.1.576	0.009973
N	67	P67S	Cct	Tct	11	11	B.1.582	0.005397
N	67	P67L	cCt	cTt	10	10	AY.26	0.000283
N	67	P67P	ccT	ccA	10	10	AY.4.2	0.000217
N	67	P67S	Cct	Tct	10	10	AY.69	0.001867
N	67	P67S	Cct	Tct	10	10	B	0.001278
N	67	P67S	Cct	Tct	10	10	B.1.349	0.007148
N	67	P67L	cCt	cTt	10	10	B.1.427	0.000505
N	67	P67S	Cct	Tct	10	10	Q.8	0.001649
N	67	P67P	ccT	ccC	9	9	AY.1	0.003562
N	67	P67H	cCt	cAt	9	9	AY.102	0.000239
N	67	P67H	cCt	cAt	9	9	AY.25	0.000054
N	67	P67S	Cct	Tct	9	9	AY.39	0.000222
N	67	P67T	Cct	Act	9	9	AY.4	0.000014
N	67	P67P	ccT	ccA	9	9	AY.42	0.000362
N	67	P67H	cCt	cAt	9	9	AY.43	0.00004
N	67	P67P	ccT	ccC	9	9	AY.45	0.001095
N	67	P67R	cCt	cGt	8	9	B.1	0.000073
N	67	P67P	ccT	ccG	4	9	B.1	0.000037
N	67	P67P	ccT	ccC	4	9	B.1	0.000037
N	67	P67P	ccT	ccA	1	9	B.1	0.000009
N	67	P67R	cCT	cGA	1	9	B.1	0.000009
N	67	P67S	Cct	Tct	9	9	B.1.1.507	0.078261
N	67	P67P	ccT	ccC	5	9	B.1.351	0.000149
N	67	P67P	ccT	ccA	4	9	B.1.351	0.000119
N	67	P67S	Cct	Tct	9	9	B.1.375	0.007377
N	67	P67L	cCt	cTt	9	9	P.1.14	0.00043
N	67	P67L	cCt	cTt	9	9	Q.8	0.001484
N	67	P67Y	CCt	TAt	8	8	All	0.000002
N	67	P67S	Cct	Tct	8	8	AY.102	0.000212
N	67	P67L	cCt	cTt	8	8	AY.98.1	0.000387
N	67	P67S	Cct	Tct	8	8	B.1.1.464	0.011782
N	67	P67P	ccT	ccG	6	8	B.1.1.519	0.000238
N	67	P67P	ccT	ccC	2	8	B.1.1.519	0.000079
N	67	P67P	ccT	ccC	6	8	B.1.177	0.000079
N	67	P67P	ccT	ccA	2	8	B.1.177	0.000026
N	67	P67L	cCt	cTt	8	8	B.1.177.60	0.001747
N	67	P67S	Cct	Tct	8	8	B.1.240	0.001725
N	67	P67S	Cct	Tct	8	8	B.1.590	0.036364
N	67	P67L	cCt	cTt	7	7	AY.119	0.000247
N	67	P67P	ccT	ccC	4	7	AY.119	0.000141
N	67	P67P	ccT	ccA	3	7	AY.119	0.000106
N	67	P67L	cCt	cTt	7	7	AY.20	0.000272
N	67	P67P	ccT	ccC	7	7	AY.34	0.000679
N	67	P67L	cCt	cTt	7	7	AY.4.2.1	0.001043
N	67	P67P	ccT	ccC	7	7	AY.43	0.000031
N	67	P67L	cCt	cTt	7	7	AY.47	0.000218
N	67	P67H	cCt	cAt	7	7	B.1.160	0.000218
N	67	P67S	Cct	Tct	7	7	B.1.284	0.092105
N	67	P67P	ccT	ccC	7	7	B.1.36.26	0.02
N	67	P67P	ccT	ccG	7	7	B.1.396	0.00494
N	67	P67L	cCt	cTt	7	7	B.1.429	0.000165
N	67	P67S	Cct	Tct	7	7	B.1.567	0.023333
N	67	P67S	Cct	Tct	7	7	B.1.612	0.018568
N	67	P67S	Cct	Tct	6	6	AY.100	0.000276
N	67	P67T	Cct	Act	6	6	AY.103	0.000037
N	67	P67A	Cct	Gct	6	6	AY.103	0.000037
N	67	P67H	cCt	cAt	6	6	AY.39	0.000148
N	67	P67S	Cct	Tct	6	6	AY.4.2	0.00013
N	67	P67T	Cct	Act	6	6	AY.44	0.000037
N	67	P67P	ccT	ccA	5	6	AY.54	0.000477
N	67	P67P	ccT	ccG	1	6	AY.54	0.000095
N	67	P67T	Cct	Act	6	6	AY.86	0.004979
N	67	P67S	Cct	Tct	6	6	AY.98	0.000474
N	67	P67P	ccT	ccA	6	6	B.1.1.27	0.033898
N	67	P67L	cCt	cTt	6	6	B.1.1.351	0.01676
N	67	P67P	ccT	ccA	3	6	B.1.160	0.000094
N	67	P67P	ccT	ccC	3	6	B.1.160	0.000094
N	67	P67L	cCt	cTt	6	6	B.1.177.57	0.001686
N	67	P67S	Cct	Tct	6	6	B.1.177.62	0.007151
N	67	P67S	Cct	Tct	6	6	B.1.367	0.004754
N	67	P67S	Cct	Tct	6	6	B.1.438.1	0.000644
N	67	P67H	cCt	cAt	6	6	B.1.526	0.000141
N	67	P67S	Cct	Tct	6	6	B.1.526	0.000141
N	67	P67S	Cct	Tct	6	6	B.1.565	0.004862
N	67	P67L	cCt	cTt	6	6	B.1.568	0.006667
N	67	P67S	Cct	Tct	6	6	B.1.606	0.036145
N	67	P67L	cCt	cTt	6	6	C.37	0.000696
N	67	P67L	cCt	cTt	6	6	P.1.13	0.005391
N	67	P67S	Cct	Tct	5	5		0.277778
N	67	P67S	Cct	Tct	4	5	AY.106	0.00134
N	67	P67S	CcT	TcC	1	5	AY.106	0.000335
N	67	P67S	Cct	Tct	5	5	AY.13	0.000805
N	67	P67L	cCt	cTt	5	5	AY.29	0.000079
N	67	P67L	cCt	cTt	5	5	AY.39	0.000124
N	67	P67S	Cct	Tct	5	5	AY.42	0.000201
N	67	P67L	cCt	cTt	5	5	AY.45	0.000608
N	67	P67S	Cct	Tct	5	5	AY.46.6	0.000361
N	67	P67S	Cct	Tct	5	5	AY.5	0.000103
N	67	P67S	Cct	Tct	5	5	AY.6	0.000206
N	67	P67S	Cct	Tct	5	5	AY.99.2	0.000461
N	67	P67H	cCt	cAt	5	5	B.1	0.000046
N	67	P67S	Cct	Tct	5	5	B.1.1.222	0.00102
N	67	P67S	Cct	Tct	5	5	B.1.139	0.003666
N	67	P67S	Cct	Tct	5	5	B.1.157	0.014925
N	67	P67P	ccT	ccC	5	5	B.1.177.21	0.000382
N	67	P67L	cCt	cTt	5	5	B.1.234	0.00066
N	67	P67P	ccT	ccC	5	5	B.1.234	0.00066
N	67	P67S	Cct	Tct	5	5	B.1.351	0.000149
N	67	P67L	cCt	cTt	5	5	B.1.36	0.00073
N	67	P67S	Cct	Tct	5	5	B.1.589	0.037879
N	67	P67P	ccT	ccC	2	5	B.1.621	0.000177
N	67	P67P	ccT	ccG	2	5	B.1.621	0.000177
N	67	P67P	ccT	ccA	1	5	B.1.621	0.000089
N	67	P67S	Cct	Tct	5	5	B.1.78	0.042735
N	67	P67S	Cct	Tct	4	4	AT.1	0.020513
N	67	P67P	ccT	ccC	2	4	AY.102	0.000053
N	67	P67P	ccT	ccA	2	4	AY.102	0.000053
N	67	P67S	Cct	Tct	4	4	AY.121	0.000541
N	67	P67S	Cct	Tct	4	4	AY.20	0.000155
N	67	P67S	Cct	Tct	4	4	AY.29.1	0.000882
N	67	P67P	ccT	ccA	3	4	AY.3.1	0.000256
N	67	P67P	ccT	ccC	1	4	AY.3.1	0.000085
N	67	P67H	cCt	cAt	4	4	AY.33	0.000267
N	67	P67R	cCt	cGt	4	4	AY.4	0.000006
N	67	P67S	Cct	Tct	4	4	AY.54	0.000381
N	67	P67S	Cct	Tct	4	4	AY.9.2	0.000147
N	67	P67S	Cct	Tct	4	4	AY.98.1	0.000194
N	67	P67S	Cct	Tct	4	4	B.1.1.1	0.001307
N	67	P67L	cCt	cTt	4	4	B.1.1.170	0.004988
N	67	P67P	ccT	ccG	4	4	B.1.1.322	0.035088
N	67	P67S	Cct	Tct	4	4	B.1.1.402	0.044444
N	67	P67P	ccT	ccC	4	4	B.1.1.420	0.004024
N	67	P67P	ccT	ccC	3	4	B.1.1.63	0.001157
N	67	P67P	ccT	ccG	1	4	B.1.1.63	0.000386
N	67	P67R	cCt	cGt	4	4	B.1.1.7	0.000004
N	67	P67S	Cct	Tct	4	4	B.1.126	0.005102
N	67	P67S	Cct	Tct	4	4	B.1.160	0.000125
N	67	P67Y	CCt	TAt	4	4	B.1.2	0.000035
N	67	P67S	Cct	Tct	4	4	B.1.210	0.008529
N	67	P67H	cCt	cAt	4	4	B.1.214.2	0.002398
N	67	P67S	Cct	Tct	4	4	B.1.264	0.049383
N	67	P67S	Cct	Tct	4	4	B.1.298	0.008457
N	67	P67S	Cct	Tct	4	4	B.1.324	0.006421
N	67	P67S	Cct	Tct	4	4	B.1.336	0.009756
N	67	P67P	ccT	ccC	4	4	B.1.438.1	0.000429
N	67	P67Y	CCt	TAt	4	4	B.1.596	0.000349
N	67	P67S	Cct	Tct	4	4	B.1.609	0.001918
N	67	P67H	cCt	cAt	4	4	B.1.617.1	0.000516
N	67	P67S	Cct	Tct	4	4	D.2	0.0003
N	67	P67S	Cct	Tct	4	4	R.1	0.00036
N	67	P67S	Cct	Tct	3	3	A	0.001161
N	67	P67V	CCt	GTt	2	3	All	0
N	67	P67V	CCT	GTA	1	3	All	0
N	67	P67H	cCt	cAt	3	3	AY.103	0.000019
N	67	P67T	Cct	Act	3	3	AY.114	0.000693
N	67	P67R	cCt	cGt	3	3	AY.116.1	0.000934
N	67	P67T	Cct	Act	3	3	AY.25	0.000018
N	67	P67S	Cct	Tct	3	3	AY.33	0.0002
N	67	P67T	Cct	Act	3	3	AY.33	0.0002
N	67	P67A	Cct	Gct	3	3	AY.44	0.000018
N	67	P67P	ccT	ccC	3	3	AY.6	0.000123
N	67	P67L	cCt	cTt	3	3	AY.62	0.001307
N	67	P67S	Cct	Tct	3	3	AY.75	0.000168
N	67	P67S	Cct	Tct	3	3	AY.75.1	0.000541
N	67	P67S	Cct	Tct	3	3	AY.9.1	0.000251
N	67	P67L	cCt	cTt	3	3	AY.95	0.002283
N	67	P67T	Cct	Act	3	3	B.1.1.10	0.003344
N	67	P67S	Cct	Tct	3	3	B.1.1.294	0.003797
N	67	P67H	cCt	cAt	3	3	B.1.1.434	0.001046
N	67	P67H	cCt	cAt	3	3	B.1.177.68	0.045455
N	67	P67S	Cct	Tct	3	3	B.1.177.81	0.000568
N	67	P67L	cCt	cTt	3	3	B.1.177.86	0.00055
N	67	P67S	Cct	Tct	3	3	B.1.330	0.085714
N	67	P67S	Cct	Tct	3	3	B.1.337	0.01676
N	67	P67S	Cct	Tct	3	3	B.1.36.16	0.004274
N	67	P67S	Cct	Tct	3	3	B.1.36.22	0.003623
N	67	P67R	cCt	cGt	3	3	B.1.404	0.003906
N	67	P67L	cCt	cTt	3	3	B.1.408	0.01107
N	67	P67P	ccT	ccC	3	3	B.1.429	0.000071
N	67	P67L	cCt	cTt	3	3	B.1.438.1	0.000322
N	67	P67S	Cct	Tct	3	3	B.1.466.2	0.001174
N	67	P67A	Cct	Gct	2	3	B.1.617.2	0.000008
N	67	P67A	CcT	GcA	1	3	B.1.617.2	0.000004
N	67	P67S	Cct	Tct	3	3	C.32	0.069767
N	67	P67A	Cct	Gct	2	3	P.1	0.000032
N	67	P67A	CcT	GcG	1	3	P.1	0.000016
N	67	P67P	ccT	ccC	2	3	P.1.15	0.000465
N	67	P67P	ccT	ccA	1	3	P.1.15	0.000232
N	67	P67L	cCt	cTt	3	3	R.1	0.00027
N	67	P67L	cCT	cTG	2	2		0.111111
N	67	P67A	Cct	Gct	2	2		0.111111
N	67	P67L	cCt	cTt	2	2	A.23.1	0.001408
N	67	P67S	Cct	Tct	2	2	AD.2	0.000438
N	67	P67C	CCt	TGt	2	2	All	0
N	67	P67D	CCt	GAt	2	2	All	0
N	67	P67P	ccT	ccC	2	2	AY.100	0.000092
N	67	P67H	cCt	cAt	2	2	AY.106	0.00067
N	67	P67T	Cct	Act	2	2	AY.108	0.002205
N	67	P67H	cCt	cAt	2	2	AY.113	0.000285
N	67	P67S	Cct	Tct	2	2	AY.119	0.000071
N	67	P67L	cCt	cTt	2	2	AY.12	0.000632
N	67	P67L	cCt	cTt	2	2	AY.120.1	0.000642
N	67	P67L	cCt	cTt	2	2	AY.121	0.000271
N	67	P67L	cCt	cTt	2	2	AY.23	0.000139
N	67	P67P	ccT	ccC	2	2	AY.29	0.000032
N	67	P67H	cCt	cAt	2	2	AY.3	0.00002
N	67	P67P	ccT	ccC	2	2	AY.33	0.000134
N	67	P67P	ccT	ccC	2	2	AY.35	0.000466
N	67	P67P	ccT	ccC	2	2	AY.39.1	0.000079
N	67	P67L	cCt	cTt	2	2	AY.4.2	0.000043
N	67	P67L	cCt	cTt	2	2	AY.4.4	0.000818
N	67	P67del	CCT	---	2	2	AY.43	0.000009
N	67	P67A	Cct	Gct	2	2	AY.43	0.000009
N	67	P67T	Cct	Act	2	2	AY.43	0.000009
N	67	P67H	cCt	cAt	2	2	AY.45	0.000243
N	67	P67A	Cct	Gct	2	2	AY.45	0.000243
N	67	P67S	Cct	Tct	2	2	AY.46.1	0.002053
N	67	P67S	Cct	Tct	2	2	AY.46.4	0.000329
N	67	P67S	Cct	Tct	2	2	AY.47	0.000062
N	67	P67S	Cct	Tct	2	2	AY.49	0.00639
N	67	P67L	cCt	cTt	2	2	AY.54	0.000191
N	67	P67L	cCt	cTt	2	2	AY.55	0.001835
N	67	P67S	Cct	Tct	2	2	AY.62	0.000871
N	67	P67L	cCt	cTt	2	2	AY.69	0.000373
N	67	P67S	Cct	Tct	2	2	AY.7.1	0.000225
N	67	P67H	cCt	cAt	2	2	AY.7.1	0.000225
N	67	P67P	ccT	ccA	2	2	AY.74	0.000231
N	67	P67P	ccT	ccC	2	2	AY.82	0.002714
N	67	P67S	Cct	Tct	2	2	AY.9	0.000135
N	67	P67P	ccT	ccA	2	2	AY.9.2	0.000073
N	67	P67P	ccT	ccA	1	2	AY.93	0.000273
N	67	P67P	ccT	ccC	1	2	AY.93	0.000273
N	67	P67P	ccT	ccG	2	2	AZ.2	0.001642
N	67	P67L	cCt	cTt	2	2	B	0.000256
N	67	P67P	ccT	ccC	2	2	B.1.1	0.000036
N	67	P67S	Cct	Tct	2	2	B.1.1.169	0.036364
N	67	P67L	cCt	cTt	2	2	B.1.1.216	0.001781
N	67	P67S	Cct	Tct	2	2	B.1.1.216	0.001781
N	67	P67L	cCt	cTt	2	2	B.1.1.25	0.001137
N	67	P67L	cCt	cTt	2	2	B.1.1.28	0.000622
N	67	P67S	Cct	Tct	2	2	B.1.1.301	0.002358
N	67	P67S	Cct	Tct	2	2	B.1.1.33	0.000842
N	67	P67T	Cct	Act	2	2	B.1.1.348	0.001592
N	67	P67S	Cct	Tct	2	2	B.1.1.432	0.002532
N	67	P67S	Cct	Tct	2	2	B.1.1.434	0.000697
N	67	P67S	Cct	Tct	2	2	B.1.1.441	0.1
N	67	P67A	Cct	Gct	2	2	B.1.1.50	0.001358
N	67	P67T	Cct	Act	2	2	B.1.1.519	0.000079
N	67	P67S	Cct	Tct	2	2	B.1.1.526	0.007092
N	67	P67A	Cct	Gct	2	2	B.1.1.7	0.000002
N	67	P67del	CCT	---	2	2	B.1.1.7	0.000002
N	67	P67P	ccT	ccC	2	2	B.1.14	0.035088
N	67	P67R	cCT	cGA	1	2	B.1.157	0.002985
N	67	P67R	cCt	cGt	1	2	B.1.157	0.002985
N	67	P67L	cCt	cTt	2	2	B.1.177.44	0.001038
N	67	P67L	cCt	cTt	2	2	B.1.177.50	0.00939
N	67	P67L	cCt	cTt	2	2	B.1.177.82	0.000955
N	67	P67L	cCt	cTt	2	2	B.1.189	0.008584
N	67	P67S	Cct	Tct	2	2	B.1.211	0.05
N	67	P67S	Cct	Tct	2	2	B.1.214	0.007326
N	67	P67S	Cct	Tct	2	2	B.1.232	0.001075
N	67	P67L	cCt	cTt	2	2	B.1.258	0.000133
N	67	P67S	Cct	Tct	2	2	B.1.258.17	0.000208
N	67	P67S	Cct	Tct	2	2	B.1.265	0.002541
N	67	P67S	Cct	Tct	2	2	B.1.325	0.013793
N	67	P67P	ccT	ccC	1	2	B.1.36	0.000146
N	67	P67P	ccT	ccA	1	2	B.1.36	0.000146
N	67	P67S	Cct	Tct	2	2	B.1.36.29	0.001035
N	67	P67P	ccT	ccC	2	2	B.1.36.8	0.002
N	67	P67S	Cct	Tct	2	2	B.1.382	0.017857
N	67	P67S	Cct	Tct	2	2	B.1.395	0.014085
N	67	P67S	Cct	Tct	2	2	B.1.416.1	0.003125
N	67	P67L	cCt	cTt	2	2	B.1.422	0.001625
N	67	P67S	Cct	Tct	2	2	B.1.517	0.000854
N	67	P67S	Cct	Tct	2	2	B.1.521	0.00995
N	67	P67P	ccT	ccC	2	2	B.1.525	0.000226
N	67	P67P	ccT	ccC	2	2	B.1.526	0.000047
N	67	P67S	Cct	Tct	2	2	B.1.550	0.027397
N	67	P67L	cCt	cTt	2	2	B.1.551	0.002581
N	67	P67S	Cct	Tct	2	2	B.1.566	0.038462
N	67	P67S	Cct	Tct	2	2	B.1.575	0.000607
N	67	P67S	Cct	Tct	2	2	B.1.581	0.018868
N	67	P67T	Cct	Act	2	2	B.1.588	0.00182
N	67	P67S	Cct	Tct	2	2	B.1.588	0.00182
N	67	P67S	Cct	Tct	2	2	B.1.617.1	0.000258
N	67	P67R	cCt	cGt	2	2	B.1.618	0.008065
N	67	P67S	Cct	Tct	2	2	B.1.623	0.001073
N	67	P67L	cCt	cTt	2	2	B.1.625	0.004706
N	67	P67S	Cct	Tct	2	2	B.1.637	0.000146
N	67	P67S	Cct	Tct	2	2	B.1.88.1	0.009615
N	67	P67S	Cct	Tct	2	2	C.16	0.002121
N	67	P67L	cCt	cTt	2	2	C.36	0.001821
N	67	P67S	Cct	Tct	2	2	C.37	0.000232
N	67	P67S	Cct	Tct	2	2	P.1.12	0.000968
N	67	P67S	Cct	Tct	2	2	P.1.15	0.000465
N	67	P67T	Cct	Act	2	2	P.1.9	0.009615
N	67	P67P	ccT	ccG	1	2	P.2	0.000187
N	67	P67A	CcT	GcG	1	2	P.2	0.000187
N	67	P67P	ccT	ccC	1	2	P.2	0.000187
N	67	P67A	Cct	Gct	1	2	P.2	0.000187
N	67	P67H	cCt	cAt	1	1	A	0.000387
N	67	P67H	cCt	cAt	1	1	A.15	0.015873
N	67	P67S	Cct	Tct	1	1	A.2.2	0.001689
N	67	P67S	Cct	Tct	1	1	A.2.5	0.000499
N	67	P67L	cCt	cTt	1	1	A.2.5	0.000499
N	67	P67P	ccT	ccC	1	1	A.2.5	0.000499
N	67	P67S	Cct	Tct	1	1	A.2.5.2	0.001572
N	67	P67S	Cct	Tct	1	1	A.23.1	0.000704
N	67	P67L	cCt	cTt	1	1	A.25	0.018182
N	67	P67S	Cct	Tct	1	1	AA.1	0.007246
N	67	P67Q	cCT	cAA	1	1	All	0
N	67	P67E	CCT	GAA	1	1	All	0
N	67	P67G	CCT	GGA	1	1	All	0
N	67	P67S	Cct	Tct	1	1	AY.101	0.00049
N	67	P67A	Cct	Gct	1	1	AY.102	0.000027
N	67	P67T	Cct	Act	1	1	AY.102	0.000027
N	67	P67L	cCt	cTt	1	1	AY.106	0.000335
N	67	P67P	ccT	ccC	1	1	AY.109	0.00074
N	67	P67S	Cct	Tct	1	1	AY.109	0.00074
N	67	P67P	ccT	ccC	1	1	AY.111	0.000183
N	67	P67L	cCt	cTt	1	1	AY.113	0.000142
N	67	P67S	Cct	Tct	1	1	AY.113	0.000142
N	67	P67P	ccT	ccC	1	1	AY.114	0.000231
N	67	P67S	Cct	Tct	1	1	AY.114	0.000231
N	67	P67H	cCt	cAt	1	1	AY.116	0.000287
N	67	P67S	Cct	Tct	1	1	AY.116	0.000287
N	67	P67L	cCt	cTt	1	1	AY.116.1	0.000311
N	67	P67P	ccT	ccC	1	1	AY.117	0.000085
N	67	P67L	cCt	cTt	1	1	AY.117	0.000085
N	67	P67L	cCt	cTt	1	1	AY.118	0.000063
N	67	P67H	cCt	cAt	1	1	AY.120	0.000037
N	67	P67S	Cct	Tct	1	1	AY.120	0.000037
N	67	P67P	ccT	ccA	1	1	AY.120	0.000037
N	67	P67L	cCt	cTt	1	1	AY.16	0.00038
N	67	P67S	Cct	Tct	1	1	AY.16.1	0.00047
N	67	P67del	CCT	---	1	1	AY.18	0.010101
N	67	P67V	CCt	GTt	1	1	AY.18	0.010101
N	67	P67S	Cct	Tct	1	1	AY.19	0.00114
N	67	P67T	Cct	Act	1	1	AY.20	0.000039
N	67	P67A	Cct	Gct	1	1	AY.20	0.000039
N	67	P67H	cCt	cAt	1	1	AY.20	0.000039
N	67	P67P	ccT	ccC	1	1	AY.23	0.00007
N	67	P67S	Cct	Tct	1	1	AY.23	0.00007
N	67	P67L	cCt	cTt	1	1	AY.23.1	0.000417
N	67	P67P	ccT	ccC	1	1	AY.24	0.000431
N	67	P67P	ccT	ccC	1	1	AY.26	0.000028
N	67	P67S	Cct	Tct	1	1	AY.27	0.000065
N	67	P67H	cCt	cAt	1	1	AY.29	0.000016
N	67	P67L	cCt	cTt	1	1	AY.3.1	0.000085
N	67	P67S	Cct	Tct	1	1	AY.32	0.000532
N	67	P67S	Cct	Tct	1	1	AY.34	0.000097
N	67	P67H	cCt	cAt	1	1	AY.34	0.000097
N	67	P67T	Cct	Act	1	1	AY.36	0.000148
N	67	P67P	ccT	ccA	1	1	AY.36	0.000148
N	67	P67P	ccT	ccG	1	1	AY.38	0.000499
N	67	P67L	cCt	cTt	1	1	AY.38	0.000499
N	67	P67P	ccT	ccC	1	1	AY.39	0.000025
N	67	P67S	Cct	Tct	1	1	AY.39.1	0.00004
N	67	P67del	CCT	---	1	1	AY.4	0.000002
N	67	P67S	Cct	Tct	1	1	AY.4.3	0.000842
N	67	P67L	cCt	cTt	1	1	AY.4.5	0.000107
N	67	P67L	cCt	cTt	1	1	AY.42	0.00004
N	67	P67R	cCT	cGC	1	1	AY.44	0.000006
N	67	P67L	cCt	cTt	1	1	AY.46	0.000104
N	67	P67T	Cct	Act	1	1	AY.46	0.000104
N	67	P67R	cCt	cGt	1	1	AY.46	0.000104
N	67	P67H	cCt	cAt	1	1	AY.46	0.000104
N	67	P67P	ccT	ccA	1	1	AY.5	0.000021
N	67	P67H	cCt	cAt	1	1	AY.5	0.000021
N	67	P67T	Cct	Act	1	1	AY.54	0.000095
N	67	P67S	Cct	Tct	1	1	AY.55	0.000917
N	67	P67S	Cct	Tct	1	1	AY.59	0.00053
N	67	P67P	ccT	ccC	1	1	AY.59	0.00053
N	67	P67S	Cct	Tct	1	1	AY.60	0.000938
N	67	P67P	ccT	ccC	1	1	AY.61	0.000105
N	67	P67L	cCt	cTt	1	1	AY.61	0.000105
N	67	P67S	Cct	Tct	1	1	AY.61	0.000105
N	67	P67S	Cct	Tct	1	1	AY.63	0.000387
N	67	P67A	Cct	Gct	1	1	AY.64	0.000595
N	67	P67L	cCt	cTt	1	1	AY.67	0.000464
N	67	P67del	CCT	---	1	1	AY.67	0.000464
N	67	P67S	Cct	Tct	1	1	AY.68	0.000274
N	67	P67L	cCt	cTt	1	1	AY.68	0.000274
N	67	P67L	cCt	cTt	1	1	AY.7	0.000196
N	67	P67L	cCt	cTt	1	1	AY.7.1	0.000113
N	67	P67S	Cct	Tct	1	1	AY.71	0.000475
N	67	P67S	Cct	Tct	1	1	AY.74	0.000116
N	67	P67P	ccT	ccC	1	1	AY.75.1	0.00018
N	67	P67L	cCt	cTt	1	1	AY.75.1	0.00018
N	67	P67L	cCt	cTt	1	1	AY.79	0.001211
N	67	P67S	Cct	Tct	1	1	AY.79	0.001211
N	67	P67L	cCt	cTt	1	1	AY.8	0.000606
N	67	P67S	Cct	Tct	1	1	AY.83	0.001724
N	67	P67P	ccT	ccC	1	1	AY.84	0.000437
N	67	P67L	cCt	cTt	1	1	AY.9	0.000068
N	67	P67P	ccT	ccC	1	1	AY.9.1	0.000084
N	67	P67L	cCt	cTt	1	1	AY.9.1	0.000084
N	67	P67del	CCT	---	1	1	AY.9.2	0.000037
N	67	P67L	cCt	cTt	1	1	AY.91	0.00073
N	67	P67S	Cct	Tct	1	1	AY.92	0.000287
N	67	P67L	cCt	cTt	1	1	AY.93	0.000273
N	67	P67P	ccT	ccC	1	1	AY.95	0.000761
N	67	P67del	CCT	---	1	1	AY.98	0.000079
N	67	P67L	cCt	cTt	1	1	AY.98	0.000079
N	67	P67H	cCt	cAt	1	1	AY.98.1	0.000048
N	67	P67P	ccT	ccC	1	1	AY.98.1	0.000048
N	67	P67del	CCT	---	1	1	AY.99	0.001049
N	67	P67P	ccT	ccA	1	1	AY.99	0.001049
N	67	P67H	cCt	cAt	1	1	AY.99.2	0.000092
N	67	P67P	ccT	ccC	1	1	AY.99.2	0.000092
N	67	P67L	cCt	cTt	1	1	AY.99.2	0.000092
N	67	P67del	CCT	---	1	1	AZ.2	0.000821
N	67	P67V	CCt	GTt	1	1	B	0.000128
N	67	P67del	CCT	---	1	1	B.1	0.000009
N	67	P67del	CCT	---	1	1	B.1.1	0.000018
N	67	P67H	cCT	cAC	1	1	B.1.1	0.000018
N	67	P67S	Cct	Tct	1	1	B.1.1.122	0.045455
N	67	P67del	CCT	---	1	1	B.1.1.139	0.022727
N	67	P67P	ccT	ccC	1	1	B.1.1.141	0.002012
N	67	P67L	cCt	cTt	1	1	B.1.1.141	0.002012
N	67	P67S	Cct	Tct	1	1	B.1.1.148	0.008772
N	67	P67S	Cct	Tct	1	1	B.1.1.161	0.003534
N	67	P67P	ccT	ccC	1	1	B.1.1.170	0.001247
N	67	P67S	Cct	Tct	1	1	B.1.1.174	0.003378
N	67	P67L	cCt	cTt	1	1	B.1.1.189	0.001513
N	67	P67S	Cct	Tct	1	1	B.1.1.192	0.002309
N	67	P67S	Cct	Tct	1	1	B.1.1.198	0.001468
N	67	P67L	cCt	cTt	1	1	B.1.1.210	0.005714
N	67	P67S	Cct	Tct	1	1	B.1.1.214	0.000055
N	67	P67del	CCT	---	1	1	B.1.1.216	0.00089
N	67	P67P	ccT	ccC	1	1	B.1.1.216	0.00089
N	67	P67L	cCt	cTt	1	1	B.1.1.222	0.000204
N	67	P67H	cCt	cAt	1	1	B.1.1.222	0.000204
N	67	P67S	Cct	Tct	1	1	B.1.1.236	0.006897
N	67	P67S	Cct	Tct	1	1	B.1.1.255	0.00303
N	67	P67S	Cct	Tct	1	1	B.1.1.265	0.003155
N	67	P67S	Cct	Tct	1	1	B.1.1.27	0.00565
N	67	P67S	Cct	Tct	1	1	B.1.1.277	0.000759
N	67	P67S	Cct	Tct	1	1	B.1.1.28	0.000311
N	67	P67H	cCt	cAt	1	1	B.1.1.303	0.002762
N	67	P67S	Cct	Tct	1	1	B.1.1.327	0.1
N	67	P67S	Cct	Tct	1	1	B.1.1.329	0.003846
N	67	P67S	Cct	Tct	1	1	B.1.1.334	0.016393
N	67	P67S	Cct	Tct	1	1	B.1.1.343	0.020833
N	67	P67S	Cct	Tct	1	1	B.1.1.362	0.005618
N	67	P67S	Cct	Tct	1	1	B.1.1.371	0.010417
N	67	P67S	Cct	Tct	1	1	B.1.1.377	0.001381
N	67	P67S	Cct	Tct	1	1	B.1.1.381	0.04
N	67	P67S	Cct	Tct	1	1	B.1.1.389	0.006061
N	67	P67S	Cct	Tct	1	1	B.1.1.398	0.003226
N	67	P67S	Cct	Tct	1	1	B.1.1.409	0.002833
N	67	P67L	cCt	cTt	1	1	B.1.1.420	0.001006
N	67	P67S	Cct	Tct	1	1	B.1.1.421	0.030303
N	67	P67S	Cct	Tct	1	1	B.1.1.466	0.008696
N	67	P67P	ccT	ccC	1	1	B.1.1.50	0.000679
N	67	P67S	Cct	Tct	1	1	B.1.1.518	0.006329
N	67	P67H	cCt	cAt	1	1	B.1.1.519	0.00004
N	67	P67del	CCT	---	1	1	B.1.1.63	0.000386
N	67	P67G	CCT	GGA	1	1	B.1.1.7	0.000001
N	67	P67D	CCt	GAt	1	1	B.1.1.7	0.000001
N	67	P67V	CCT	GTA	1	1	B.1.1.7	0.000001
N	67	P67C	CCt	TGt	1	1	B.1.1.7	0.000001
N	67	P67L	cCt	cTt	1	1	B.1.1.70	0.000341
N	67	P67L	cCt	cTt	1	1	B.1.110.3	0.000718
N	67	P67S	Cct	Tct	1	1	B.1.110.3	0.000718
N	67	P67P	ccT	ccC	1	1	B.1.111	0.001175
N	67	P67S	Cct	Tct	1	1	B.1.119	0.010526
N	67	P67L	cCt	cTt	1	1	B.1.128	0.000635
N	67	P67S	Cct	Tct	1	1	B.1.128	0.000635
N	67	P67P	ccT	ccA	1	1	B.1.157	0.002985
N	67	P67R	cCt	cGt	1	1	B.1.160.14	0.002119
N	67	P67S	Cct	Tct	1	1	B.1.170	0.00431
N	67	P67C	CCt	TGt	1	1	B.1.177	0.000013
N	67	P67H	cCt	cAt	1	1	B.1.177	0.000013
N	67	P67S	Cct	Tct	1	1	B.1.177.12	0.000152
N	67	P67L	cCt	cTt	1	1	B.1.177.12	0.000152
N	67	P67L	cCt	cTt	1	1	B.1.177.4	0.000211
N	67	P67P	ccT	ccC	1	1	B.1.177.4	0.000211
N	67	P67L	cCt	cTt	1	1	B.1.177.42	0.000894
N	67	P67L	cCt	cTt	1	1	B.1.177.54	0.000606
N	67	P67del	CCT	---	1	1	B.1.177.63	0.002703
N	67	P67S	Cct	Tct	1	1	B.1.177.7	0.000165
N	67	P67P	ccT	ccA	1	1	B.1.177.7	0.000165
N	67	P67T	Cct	Act	1	1	B.1.177.75	0.001041
N	67	P67T	Cct	Act	1	1	B.1.177.81	0.000189
N	67	P67H	cCt	cAt	1	1	B.1.177.86	0.000183
N	67	P67S	Cct	Tct	1	1	B.1.179	0.003759
N	67	P67S	Cct	Tct	1	1	B.1.189	0.004292
N	67	P67S	Cct	Tct	1	1	B.1.194	0.04
N	67	P67R	cCt	cGt	1	1	B.1.2	0.000009
N	67	P67L	cCt	cTt	1	1	B.1.203	0.0625
N	67	P67L	cCt	cTt	1	1	B.1.210	0.002132
N	67	P67T	Cct	Act	1	1	B.1.221	0.000071
N	67	P67H	cCt	cAt	1	1	B.1.234	0.000132
N	67	P67S	Cct	Tct	1	1	B.1.236	0.002053
N	67	P67P	ccT	ccC	1	1	B.1.240	0.000216
N	67	P67P	ccT	ccC	1	1	B.1.243	0.00007
N	67	P67F	CCt	TTt	1	1	B.1.243	0.00007
N	67	P67L	cCt	cTt	1	1	B.1.243	0.00007
N	67	P67S	Cct	Tct	1	1	B.1.247	0.014925
N	67	P67A	Cct	Gct	1	1	B.1.258	0.000067
N	67	P67L	cCt	cTt	1	1	B.1.258.11	0.000396
N	67	P67del	CCT	---	1	1	B.1.258.11	0.000396
N	67	P67L	cCt	cTt	1	1	B.1.258.17	0.000104
N	67	P67L	cCt	cTt	1	1	B.1.265	0.001271
N	67	P67S	Cct	Tct	1	1	B.1.279	0.000514
N	67	P67S	Cct	Tct	1	1	B.1.305	0.002151
N	67	P67S	Cct	Tct	1	1	B.1.306	0.005714
N	67	P67L	cCt	cTt	1	1	B.1.311	0.000275
N	67	P67S	Cct	Tct	1	1	B.1.326	0.007576
N	67	P67S	Cct	Tct	1	1	B.1.335	0.010309
N	67	P67S	Cct	Tct	1	1	B.1.340	0.004292
N	67	P67L	cCt	cTt	1	1	B.1.349	0.000715
N	67	P67H	cCt	cAt	1	1	B.1.351	0.00003
N	67	P67T	Cct	Act	1	1	B.1.351	0.00003
N	67	P67R	cCt	cGt	1	1	B.1.351	0.00003
N	67	P67H	cCt	cAt	1	1	B.1.36	0.000146
N	67	P67S	Cct	Tct	1	1	B.1.36	0.000146
N	67	P67L	cCt	cTt	1	1	B.1.36.10	0.004785
N	67	P67L	cCt	cTt	1	1	B.1.36.29	0.000517
N	67	P67S	Cct	Tct	1	1	B.1.36.35	0.002604
N	67	P67S	Cct	Tct	1	1	B.1.36.39	0.002217
N	67	P67L	cCT	cTC	1	1	B.1.36.8	0.001
N	67	P67S	Cct	Tct	1	1	B.1.36.9	0.003215
N	67	P67P	ccT	ccC	1	1	B.1.36.9	0.003215
N	67	P67S	Cct	Tct	1	1	B.1.363	0.012987
N	67	P67L	cCt	cTt	1	1	B.1.367	0.000792
N	67	P67L	cCt	cTt	1	1	B.1.369	0.000285
N	67	P67S	Cct	Tct	1	1	B.1.370	0.008
N	67	P67S	Cct	Tct	1	1	B.1.371	0.001122
N	67	P67H	cCt	cAt	1	1	B.1.380	0.006623
N	67	P67S	Cct	Tct	1	1	B.1.391	0.001127
N	67	P67L	cCt	cTt	1	1	B.1.391	0.001127
N	67	P67S	Cct	Tct	1	1	B.1.400.1	0.015152
N	67	P67L	cCt	cTt	1	1	B.1.404	0.001302
N	67	P67S	Cct	Tct	1	1	B.1.404	0.001302
N	67	P67S	Cct	Tct	1	1	B.1.409	0.000781
N	67	P67S	Cct	Tct	1	1	B.1.413	0.004255
N	67	P67del	CCT	---	1	1	B.1.415	0.014286
N	67	P67S	Cct	Tct	1	1	B.1.417	0.028571
N	67	P67S	Cct	Tct	1	1	B.1.423	0.010204
N	67	P67R	cCt	cGt	1	1	B.1.429	0.000024
N	67	P67del	CCT	---	1	1	B.1.429	0.000024
N	67	P67S	Cct	Tct	1	1	B.1.433	0.003195
N	67	P67S	Cct	Tct	1	1	B.1.437	0.020833
N	67	P67L	cCt	cTt	1	1	B.1.438	0.006536
N	67	P67del	CCT	---	1	1	B.1.439	0.005917
N	67	P67P	ccT	ccC	1	1	B.1.441	0.009615
N	67	P67S	Cct	Tct	1	1	B.1.443	0.004673
N	67	P67S	Cct	Tct	1	1	B.1.459	0.004082
N	67	P67L	cCt	cTt	1	1	B.1.471	0.002732
N	67	P67S	Cct	Tct	1	1	B.1.473	0.019231
N	67	P67S	Cct	Tct	1	1	B.1.485	0.014925
N	67	P67S	Cct	Tct	1	1	B.1.497	0.000315
N	67	P67S	Cct	Tct	1	1	B.1.501	0.007353
N	67	P67S	Cct	Tct	1	1	B.1.503	0.002488
N	67	P67P	ccT	ccC	1	1	B.1.517	0.000427
N	67	P67S	Cct	Tct	1	1	B.1.524	0.001406
N	67	P67P	ccT	ccC	1	1	B.1.538	0.008065
N	67	P67S	Cct	Tct	1	1	B.1.556	0.007519
N	67	P67S	Cct	Tct	1	1	B.1.558	0.004566
N	67	P67H	cCt	cAt	1	1	B.1.561	0.000397
N	67	P67L	cCt	cTt	1	1	B.1.565	0.00081
N	67	P67S	Cct	Tct	1	1	B.1.569	0.014493
N	67	P67S	Cct	Tct	1	1	B.1.571	0.009709
N	67	P67P	ccT	ccC	1	1	B.1.576	0.000907
N	67	P67F	CCt	TTt	1	1	B.1.577	0.000687
N	67	P67L	cCt	cTt	1	1	B.1.577	0.000687
N	67	P67S	Cct	Tct	1	1	B.1.595.2	0.04
N	67	P67H	cCt	cAt	1	1	B.1.596	0.000087
N	67	P67R	cCt	cGt	1	1	B.1.596	0.000087
N	67	P67F	CCt	TTt	1	1	B.1.596	0.000087
N	67	P67P	ccT	ccC	1	1	B.1.599	0.00365
N	67	P67S	Cct	Tct	1	1	B.1.602	0.006536
N	67	P67S	Cct	Tct	1	1	B.1.605	0.005952
N	67	P67S	Cct	Tct	1	1	B.1.611	0.04
N	67	P67L	cCt	cTt	1	1	B.1.617.1	0.000129
N	67	P67E	CCT	GAA	1	1	B.1.617.2	0.000004
N	67	P67del	CCT	---	1	1	B.1.617.2	0.000004
N	67	P67Q	cCT	cAA	1	1	B.1.617.2	0.000004
N	67	P67D	CCt	GAt	1	1	B.1.617.2	0.000004
N	67	P67L	cCt	cTt	1	1	B.1.621	0.000089
N	67	P67S	Cct	Tct	1	1	B.1.628	0.000352
N	67	P67S	Cct	Tct	1	1	B.1.631	0.003367
N	67	P67L	cCt	cTt	1	1	B.1.637	0.000073
N	67	P67S	Cct	Tct	1	1	B.1.67	0.043478
N	67	P67S	Cct	Tct	1	1	B.1.70	0.02439
N	67	P67S	Cct	Tct	1	1	B.1.81	0.021277
N	67	P67S	Cct	Tct	1	1	B.1.94	0.027027
N	67	P67S	Cct	Tct	1	1	B.15	0.017544
N	67	P67L	cCt	cTt	1	1	B.40	0.000364
N	67	P67T	Cct	Act	1	1	C.18	0.002591
N	67	P67S	Cct	Tct	1	1	C.35	0.000774
N	67	P67T	Cct	Act	1	1	C.37	0.000116
N	67	P67R	cCt	cGt	1	1	D.2	0.000075
N	67	P67L	cCt	cTt	1	1	L.1	0.001905
N	67	P67del	CCT	---	1	1	P.1	0.000016
N	67	P67P	ccT	ccC	1	1	P.1.1	0.000318
N	67	P67H	cCt	cAt	1	1	P.1.1	0.000318
N	67	P67S	Cct	Tct	1	1	P.1.10	0.000269
N	67	P67P	ccT	ccC	1	1	P.1.13	0.000898
N	67	P67S	Cct	Tct	1	1	P.1.7	0.000319
N	67	P67L	cCt	cTt	1	1	Q.3	0.000145
N	67	P67S	Cct	Tct	1	1	Q.3	0.000145
N	67	P67P	ccT	ccC	1	1	Q.8	0.000165
N	67	P67P	ccT	ccC	1	1	R.1	0.00009
N	67	P67T	Cct	Act	1	1	R.1	0.00009
N	67	P67L	cCt	cTt	1	1	W.4	0.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.