CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 63

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	63	D63G		nonsyn	gAc	gGc	2684504	2684161	0.999872	28460-28462
N	63	D63G		nonsyn	gAC	gGT	2684504	334	0.000124418	28460-28462
N	63	D63G		nonsyn	gAC	gGA	2684504	9	0.00000335257	28460-28462
N	63	D63S		nonsyn	GAc	AGc	7433	7432	0.999865	28460-28462
N	63	D63S		nonsyn	GAc	TCc	7433	1	0.000134535	28460-28462
N	63	D63V		nonsyn	gAc	gTc	1450	1450	1	28460-28462
N	63	D63Y		nonsyn	Gac	Tac	1364	1363	0.999267	28460-28462
N	63	D63Y		nonsyn	GaC	TaT	1364	1	0.000733138	28460-28462
N	63	D63N		nonsyn	Gac	Aac	805	805	1	28460-28462
N	63	D63D		syn	gaC	gaT	321	321	1	28460-28462
N	63	D63H		nonsyn	Gac	Cac	148	147	0.993243	28460-28462
N	63	D63H		nonsyn	GaC	CaT	148	1	0.00675676	28460-28462
N	63	D63C		nonsyn	GAc	TGc	139	138	0.992806	28460-28462
N	63	D63C		nonsyn	GAC	TGT	139	1	0.00719424	28460-28462
N	63	D63E		nonsyn	gaC	gaA	36	27	0.75	28460-28462
N	63	D63E		nonsyn	gaC	gaG	36	9	0.25	28460-28462
N	63	D63R		nonsyn	GAc	CGc	35	34	0.971429	28460-28462
N	63	D63R		nonsyn	GAC	CGT	35	1	0.0285714	28460-28462
N	63	D63del		del	GAC	---	15	15	1	28460-28462
N	63	D63del1		del	gAc	g-c	5	3	0.6	28460-28462
N	63	D63L		nonsyn	GAc	CTc	5	3	0.6	28460-28462
N	63	D63F		nonsyn	GAc	TTc	5	3	0.6	28460-28462
N	63	D63F		nonsyn	GAC	TTT	5	2	0.4	28460-28462
N	63	D63L		nonsyn	GAC	CTT	5	2	0.4	28460-28462
N	63	D63del1		del	gAC	gG-	5	1	0.2	28460-28462
N	63	D63del1		del	gaC	ga-	5	1	0.2	28460-28462
N	63	D63A		nonsyn	gAc	gCc	4	4	1	28460-28462
N	63	D63I		nonsyn	GAc	ATc	3	3	1	28460-28462

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	63	D63G	gAc	gGc	2684161	2684504	All	0.513378
N	63	D63G	gAC	gGT	334	2684504	All	0.000064
N	63	D63G	gAC	gGA	9	2684504	All	0.000002
N	63	D63G	gAc	gGc	638384	638515	AY.4	0.993595
N	63	D63G	gAC	gGT	130	638515	AY.4	0.000202
N	63	D63G	gAC	gGA	1	638515	AY.4	0.000002
N	63	D63G	gAc	gGc	260075	260117	B.1.617.2	0.97929
N	63	D63G	gAC	gGT	40	260117	B.1.617.2	0.000151
N	63	D63G	gAC	gGA	2	260117	B.1.617.2	0.000008
N	63	D63G	gAc	gGc	210396	210413	AY.43	0.932152
N	63	D63G	gAC	gGT	17	210413	AY.43	0.000075
N	63	D63G	gAc	gGc	162418	162420	AY.25	0.976915
N	63	D63G	gAC	gGT	2	162420	AY.25	0.000012
N	63	D63G	gAc	gGc	158139	158175	AY.103	0.981894
N	63	D63G	gAC	gGT	34	158175	AY.103	0.000211
N	63	D63G	gAC	gGA	2	158175	AY.103	0.000012
N	63	D63G	gAc	gGc	153496	153510	AY.44	0.934293
N	63	D63G	gAC	gGT	14	153510	AY.44	0.000085
N	63	D63G	gAc	gGc	99681	99697	AY.3	0.991466
N	63	D63G	gAC	gGT	16	99697	AY.3	0.000159
N	63	D63G	gAc	gGc	63381	63382	AY.29	0.999748
N	63	D63G	gAC	gGT	1	63382	AY.29	0.000016
N	63	D63G	gAc	gGc	47942	47942	AY.5	0.989964
N	63	D63G	gAc	gGc	45970	45972	AY.4.2	0.997029
N	63	D63G	gAC	gGT	2	45972	AY.4.2	0.000043
N	63	D63G	gAc	gGc	39457	39466	AY.39	0.975041
N	63	D63G	gAC	gGT	9	39466	AY.39	0.000222
N	63	D63G	gAc	gGc	37676	37676	AY.102	0.998939
N	63	D63G	gAc	gGc	34864	34864	AY.26	0.987006
N	63	D63G	gAc	gGc	31563	31563	AY.47	0.981772
N	63	D63G	gAc	gGc	27889	27890	AY.119	0.984712
N	63	D63G	gAC	gGT	1	27890	AY.119	0.000035
N	63	D63G	gAc	gGc	26722	26757	AY.120	0.993494
N	63	D63G	gAC	gGT	35	26757	AY.120	0.001301
N	63	D63G	gAc	gGc	26240	26240	AY.9.2	0.963785
N	63	D63G	gAc	gGc	25455	25456	AY.20	0.989312
N	63	D63G	gAC	gGT	1	25456	AY.20	0.000039
N	63	D63G	gAc	gGc	25021	25021	AY.39.1	0.991166
N	63	D63G	gAc	gGc	24232	24232	AY.6	0.996627
N	63	D63G	gAc	gGc	23497	23499	AY.42	0.945287
N	63	D63G	gAC	gGT	2	23499	AY.42	0.00008
N	63	D63G	gAc	gGc	21392	21401	AY.100	0.984174
N	63	D63G	gAC	gGT	9	21401	AY.100	0.000414
N	63	D63G	gAc	gGc	19383	19384	AY.98.1	0.938735
N	63	D63G	gAC	gGT	1	19384	AY.98.1	0.000048
N	63	D63G	gAc	gGc	17575	17575	AY.75	0.984594
N	63	D63G	gAc	gGc	15549	15549	AY.118	0.974126
N	63	D63G	gAc	gGc	15433	15433	AY.27	0.998835
N	63	D63G	gAc	gGc	14669	14677	AY.9	0.991551
N	63	D63G	gAC	gGT	8	14677	AY.9	0.000541
N	63	D63G	gAc	gGc	14451	14451	AY.33	0.965008
N	63	D63G	gAc	gGc	12882	12883	AY.23	0.898514
N	63	D63G	gAC	gGT	1	12883	AY.23	0.00007
N	63	D63G	gAc	gGc	12523	12523	AY.98	0.989257
N	63	D63G	gAc	gGc	12512	12513	AY.46.6	0.903459
N	63	D63G	gAC	gGT	1	12513	AY.46.6	0.000072
N	63	D63G	gAc	gGc	11508	11508	AY.3.1	0.981158
N	63	D63G	gAc	gGc	11450	11451	AY.9.1	0.95864
N	63	D63G	gAC	gGT	1	11451	AY.9.1	0.000084
N	63	D63G	gAc	gGc	11450	11450	AY.117	0.967715
N	63	D63G	gAc	gGc	11309	11309	AY.14	0.995335
N	63	D63G	gAc	gGc	10653	10653	AY.99.2	0.981753
N	63	D63G	gAc	gGc	10050	10050	AY.54	0.958238
N	63	D63G	gAc	gGc	10031	10031	AY.34	0.972656
N	63	D63G	gAc	gGc	9212	9212	AY.4.5	0.990218
N	63	D63G	gAc	gGc	9098	9099	AY.61	0.953269
N	63	D63G	gAC	gGT	1	9099	AY.61	0.000105
N	63	D63G	gAc	gGc	8796	8797	AY.46	0.915487
N	63	D63G	gAC	gGT	1	8797	AY.46	0.000104
N	63	D63G	gAc	gGc	8698	8698	AY.7.1	0.980277
N	63	D63G	gAc	gGc	8627	8627	AY.74	0.997687
N	63	D63G	gAc	gGc	7967	7967	AY.45	0.969457
N	63	D63S	GAc	AGc	7432	7433	All	0.001421
N	63	D63S	GAc	TCc	1	7433	All	0
N	63	D63S	GAc	AGc	6918	6918	AY.44	0.042108
N	63	D63G	gAc	gGc	6891	6891	AY.113	0.981205
N	63	D63G	gAc	gGc	6774	6774	AY.121	0.916644
N	63	D63G	gAc	gGc	6696	6696	AY.4.2.1	0.997616
N	63	D63G	gAc	gGc	6602	6602	AY.36	0.978509
N	63	D63G	gAc	gGc	6158	6159	AY.13	0.991307
N	63	D63G	gAC	gGT	1	6159	AY.13	0.000161
N	63	D63G	gAc	gGc	6004	6004	AY.46.4	0.987662
N	63	D63G	gAc	gGc	5393	5393	AY.111	0.987729
N	63	D63G	gAc	gGc	5187	5187	AY.75.1	0.935269
N	63	D63G	gAc	gGc	5156	5156	AY.69	0.962479
N	63	D63G	gAc	gGc	5078	5078	AY.7	0.995296
N	63	D63G	gAc	gGc	5036	5036	AY.46.5	0.999206
N	63	D63G	gAc	gGc	4644	4644	AY.70	0.968307
N	63	D63G	gAc	gGc	4534	4534	AY.29.1	0.999779
N	63	D63G	gAc	gGc	4256	4256	AY.114	0.983591
N	63	D63G	gAc	gGc	4222	4222	AY.35	0.98392
N	63	D63G	gAc	gGc	3709	3709	AY.110	0.417963
N	63	D63G	gAc	gGc	3656	3656	AY.93	0.998362
N	63	D63G	gAc	gGc	3498	3498	AY.68	0.957569
N	63	D63G	gAc	gGc	3495	3495	AY.5.4	0.967072
N	63	D63G	gAc	gGc	3418	3418	AY.116	0.980212
N	63	D63G	gAc	gGc	3370	3370	AY.53	0.968948
N	63	D63G	gAc	gGc	3241	3241	AY.92	0.931054
N	63	D63G	gAc	gGc	3192	3192	AY.116.1	0.994083
N	63	D63G	gAc	gGc	3125	3125	AY.37	0.987674
N	63	D63G	gAc	gGc	3090	3090	AY.12	0.976612
N	63	D63G	gAc	gGc	3089	3089	AY.120.1	0.991653
N	63	D63G	gAc	gGc	2984	2984	AY.41	0.877131
N	63	D63G	gAc	gGc	2849	2849	AY.5.3	0.961201
N	63	D63G	gAc	gGc	2791	2791	AY.2	0.993946
N	63	D63G	gAc	gGc	2765	2765	AY.106	0.925988
N	63	D63G	gAc	gGc	2562	2562	AY.63	0.991103
N	63	D63G	gAc	gGc	2522	2524	AY.16	0.957479
N	63	D63G	gAC	gGT	2	2524	AY.16	0.000759
N	63	D63G	gAc	gGc	2507	2510	AY.1	0.992085
N	63	D63G	gAC	gGA	3	2510	AY.1	0.001187
N	63	D63G	gAc	gGc	2436	2436	AY.30	0.963989
N	63	D63G	gAc	gGc	2396	2396	AY.23.1	1
N	63	D63G	gAc	gGc	2357	2357	AY.4.4	0.964403
N	63	D63G	gAc	gGc	2264	2264	AY.85	0.967108
N	63	D63G	gAc	gGc	2262	2262	AY.24	0.975
N	63	D63G	gAc	gGc	2243	2243	AY.62	0.977342
N	63	D63G	gAc	gGc	2193	2193	AY.94	0.970784
N	63	D63G	gAc	gGc	2177	2177	AY.84	0.952318
N	63	D63G	gAc	gGc	2128	2128	AY.107	0.991612
N	63	D63G	gAc	gGc	2117	2117	AY.67	0.982823
N	63	D63G	gAc	gGc	2115	2115	AY.48	0.983721
N	63	D63G	gAc	gGc	2071	2071	B.1	0.018969
N	63	D63G	gAc	gGc	2051	2051	AY.16.1	0.963816
N	63	D63G	gAc	gGc	2049	2049	AY.71	0.973397
N	63	D63G	gAc	gGc	2012	2012	AY.101	0.986758
N	63	D63G	gAc	gGc	1956	1957	AY.34.1	0.99745
N	63	D63G	gAC	gGA	1	1957	AY.34.1	0.00051
N	63	D63G	gAc	gGc	1934	1934	AY.120.2.1	0.963627
N	63	D63G	gAc	gGc	1878	1878	AY.38	0.937594
N	63	D63G	gAc	gGc	1858	1858	AY.10	0.984632
N	63	D63G	gAc	gGc	1855	1855	AY.59	0.982521
N	63	D63G	gAc	gGc	1755	1755	AY.32	0.934505
N	63	D63G	gAc	gGc	1716	1716	AY.7.2	0.959732
N	63	D63G	gAc	gGc	1711	1711	AY.65	0.912047
N	63	D63G	gAc	gGc	1659	1659	AY.64	0.9875
N	63	D63G	gAc	gGc	1648	1648	AY.8	0.998788
N	63	D63G	gAc	gGc	1518	1519	AY.57	0.996063
N	63	D63G	gAC	gGT	1	1519	AY.57	0.000656
N	63	D63G	gAc	gGc	1518	1518	AY.105	0.976206
N	63	D63G	gAc	gGc	1470	1470	AY.73	0.978044
N	63	D63G	gAc	gGc	1458	1458	AY.90	0.997947
N	63	D63V	gAc	gTc	1450	1450	All	0.000277
N	63	D63G	gAc	gGc	1447	1447	AY.46.2	0.919314
N	63	D63G	gAc	gGc	1378	1378	AY.39.1.1	0.998551
N	63	D63Y	Gac	Tac	1363	1364	All	0.000261
N	63	D63Y	GaC	TaT	1	1364	All	0
N	63	D63G	gAc	gGc	1350	1350	AY.4.1	0.995575
N	63	D63G	gAc	gGc	1320	1320	AY.109	0.976331
N	63	D63G	gAc	gGc	1320	1320	AY.91	0.964207
N	63	D63V	gAc	gTc	1263	1263	AY.4	0.001966
N	63	D63G	gAc	gGc	1258	1258	AY.95	0.957382
N	63	D63G	gAc	gGc	1246	1246	AY.50	0.996003
N	63	D63G	gAc	gGc	1196	1196	AY.87	0.995837
N	63	D63G	gAc	gGc	1190	1190	AY.52	0.969055
N	63	D63G	gAc	gGc	1183	1184	AY.86	0.981743
N	63	D63G	gAC	gGT	1	1184	AY.86	0.00083
N	63	D63G	gAc	gGc	1109	1109	AY.88	0.980548
N	63	D63G	gAc	gGc	1079	1079	AY.55	0.989908
N	63	D63G	gAc	gGc	1065	1065	AY.58	0.966425
N	63	D63G	gAc	gGc	1059	1059	AY.4.3	0.891414
N	63	D63G	gAc	gGc	1059	1059	AY.46.3	0.988796
N	63	D63G	gAc	gGc	1039	1039	AY.51	0.944545
N	63	D63G	gAc	gGc	1004	1004	AY.40	0.968177
N	63	D63G	gAc	gGc	965	965	AY.46.1	0.99076
N	63	D63G	gAc	gGc	958	958	AY.60	0.898687
N	63	D63Y	Gac	Tac	950	950	B.1.1.7	0.00085
N	63	D63G	gAc	gGc	917	917	AY.66	0.980749
N	63	D63G	gAc	gGc	895	895	AY.108	0.98677
N	63	D63G	gAc	gGc	883	883	AY.80	0.996614
N	63	D63G	gAc	gGc	871	871	AY.99	0.913956
N	63	D63G	gAc	gGc	869	869	AY.77	0.979707
N	63	D63G	gAc	gGc	855	855	AY.19	0.974914
N	63	D63G	gAc	gGc	820	821	AY.79	0.992736
N	63	D63G	gAC	gGT	1	821	AY.79	0.001211
N	63	D63N	Gac	Aac	805	805	All	0.000154
N	63	D63G	gAc	gGc	753	753	AY.120.2	0.967866
N	63	D63G	gAc	gGc	733	733	AY.11	0.981258
N	63	D63G	gAc	gGc	709	709	AY.72	0.964626
N	63	D63G	gAc	gGc	700	700	AY.82	0.949796
N	63	D63G	gAc	gGc	640	640	AY.39.2	0.986133
N	63	D63G	gAc	gGc	632	632	AY.99.1	0.981366
N	63	D63G	gAc	gGc	605	605	AY.56	0.971108
N	63	D63G	gAc	gGc	597	597	AY.78	0.919877
N	63	D63G	gAc	gGc	580	580	AY.83	1
N	63	D63G	gAc	gGc	539	539	AY.97	0.916667
N	63	D63G	gAc	gGc	529	529	AY.28	1
N	63	D63G	gAc	gGc	506	506	AY.9.2.1	1
N	63	D63G	gAc	gGc	502	503	AY.104	0.996032
N	63	D63G	gAC	gGT	1	503	AY.104	0.001984
N	63	D63G	gAc	gGc	503	503	AY.21	0.954459
N	63	D63G	gAc	gGc	487	487	AY.81	0.97012
N	63	D63G	gAc	gGc	474	474	AY.22	0.991632
N	63	D63G	gAc	gGc	448	448	AY.15	0.995556
N	63	D63G	gAc	gGc	403	403	AY.5.2	0.992611
N	63	D63N	Gac	Aac	332	332	B.1	0.003041
N	63	D63D	gaC	gaT	321	321	All	0.000061
N	63	D63G	gAc	gGc	309	309	AY.49	0.98722
N	63	D63S	GAc	AGc	286	286	B.1.617.2	0.001077
N	63	D63G	gAc	gGc	285	285	B	0.036426
N	63	D63G	gAc	gGc	266	266	AY.5.1	1
N	63	D63G	gAc	gGc	239	239	AY.91.1	0.971545
N	63	D63D	gaC	gaT	215	215	B.1.1.7	0.000192
N	63	D63G	gAc	gGc	203	203	AY.76	0.980676
N	63	D63G	gAc	gGc	202	202	AY.89	0.990196
N	63	D63H	Gac	Cac	147	148	All	0.000028
N	63	D63H	GaC	CaT	1	148	All	0
N	63	D63C	GAc	TGc	138	139	All	0.000026
N	63	D63C	GAC	TGT	1	139	All	0
N	63	D63G	gAc	gGc	122	122	AY.17	1
N	63	D63N	Gac	Aac	120	120	B.1.517	0.051238
N	63	D63G	gAc	gGc	119	119	AY.96	0.246888
N	63	D63G	gAc	gGc	104	104	AY.115	0.541667
N	63	D63N	Gac	Aac	87	87	B.1.1.7	0.000078
N	63	D63S	GAc	AGc	81	81	AY.4	0.000126
N	63	D63H	Gac	Cac	80	80	B.1.1.7	0.000072
N	63	D63N	Gac	Aac	77	77	B.1.2	0.000678
N	63	D63G	gAc	gGc	71	71	B.1.1.7	0.000064
N	63	D63N	Gac	Aac	55	55	AY.44	0.000335
N	63	D63G	gAc	gGc	53	53	AY.31	0.981481
N	63	D63G	gAc	gGc	51	51	B.1.596	0.004444
N	63	D63C	GAc	TGc	50	50	AY.4	0.000078
N	63	D63Y	Gac	Tac	49	49	B.1.526	0.001152
N	63	D63G	gAc	gGc	48	48	B.1.1	0.000871
N	63	D63V	gAc	gTc	46	46	AY.43	0.000204
N	63	D63V	gAc	gTc	39	39	B.1.617.2	0.000147
N	63	D63E	gaC	gaA	27	36	All	0.000005
N	63	D63E	gaC	gaG	9	36	All	0.000002
N	63	D63R	GAc	CGc	34	35	All	0.000007
N	63	D63R	GAC	CGT	1	35	All	0
N	63	D63G	gAc	gGc	31	31	AY.18	0.313131
N	63	D63G	gAc	gGc	30	30	B.1.214	0.10989
N	63	D63Y	Gac	Tac	28	28	B.1.2	0.000247
N	63	D63G	gAc	gGc	28	28	B.1.617.1	0.003611
N	63	D63Y	Gac	Tac	27	27	B.1	0.000247
N	63	D63R	GAc	CGc	25	25	AY.4	0.000039
N	63	D63C	GAc	TGc	25	25	AY.4.2	0.000542
N	63	D63Y	Gac	Tac	25	25	B.1.429	0.000588
N	63	D63H	Gac	Cac	24	24	B.1.177	0.000316
N	63	D63G	gAc	gGc	23	23	P.1	0.000362
N	63	D63V	gAc	gTc	20	20	AY.25	0.00012
N	63	D63N	Gac	Aac	20	20	B.1.177.8	0.015049
N	63	D63Y	Gac	Tac	19	19	B.1.438.1	0.002038
N	63	D63S	GAc	AGc	18	18	AY.9	0.001217
N	63	D63H	Gac	Cac	18	18	B.1.2	0.000158
N	63	D63G	gAc	gGc	17	17	B.1.2	0.00015
N	63	D63G	gAc	gGc	17	17	R.1	0.00153
N	63	D63del	GAC	---	15	15	All	0.000003
N	63	D63G	gAc	gGc	15	15	B.1.177	0.000198
N	63	D63S	GAc	AGc	14	14	AY.25	0.000084
N	63	D63S	GAc	AGc	14	14	AY.43	0.000062
N	63	D63Y	Gac	Tac	14	14	B.1.177.60	0.003058
N	63	D63Y	Gac	Tac	13	13	B.1.1.214	0.000721
N	63	D63Y	Gac	Tac	13	13	B.1.177	0.000171
N	63	D63V	gAc	gTc	12	12	AY.39	0.000297
N	63	D63Y	Gac	Tac	12	12	B.1.1	0.000218
N	63	D63G	gAc	gGc	12	12	B.1.1.526	0.042553
N	63	D63D	gaC	gaT	12	12	B.1.2	0.000106
N	63	D63Y	Gac	Tac	12	12	P.1	0.000189
N	63	D63S	GAc	AGc	11	11	AY.103	0.000068
N	63	D63Y	Gac	Tac	11	11	B.1.1.519	0.000437
N	63	D63C	GAc	TGc	11	11	B.1.617.2	0.000041
N	63	D63G	gAc	gGc	11	11	B.1.623	0.005901
N	63	D63V	gAc	gTc	10	10	AY.3	0.000099
N	63	D63S	GAc	AGc	10	10	AY.47	0.000311
N	63	D63N	Gac	Aac	10	10	B.1.1	0.000181
N	63	D63D	gaC	gaT	10	10	B.1.160.29	0.042194
N	63	D63G	gAc	gGc	10	10	B.1.177.73	0.005663
N	63	D63G	gAc	gGc	10	10	B.1.621	0.000885
N	63	D63G	gAc	gGc	9	9	A	0.003483
N	63	D63E	gaC	gaG	7	9	B.1.1.28	0.002179
N	63	D63E	gaC	gaA	2	9	B.1.1.28	0.000622
N	63	D63E	gaC	gaA	9	9	B.1.1.7	0.000008
N	63	D63Y	Gac	Tac	9	9	B.1.436	0.009259
N	63	D63G	gAc	gGc	9	9	B.1.526	0.000212
N	63	D63G	gAc	gGc	9	9	B.1.576	0.00816
N	63	D63Y	Gac	Tac	9	9	P.2	0.00168
N	63	D63D	gaC	gaT	8	8	B.1.177.77	0.00581
N	63	D63Y	Gac	Tac	8	8	B.1.258	0.000532
N	63	D63G	gAc	gGc	8	8	B.1.351	0.000238
N	63	D63Y	Gac	Tac	8	8	B.1.93	0.00747
N	63	D63V	gAc	gTc	7	7	AY.103	0.000043
N	63	D63C	GAc	TGc	7	7	AY.25	0.000042
N	63	D63S	GAc	AGc	7	7	AY.3	0.00007
N	63	D63C	GAc	TGc	7	7	AY.43	0.000031
N	63	D63N	Gac	Aac	7	7	B.1.177	0.000092
N	63	D63G	gAc	gGc	7	7	B.1.628	0.002467
N	63	D63Y	Gac	Tac	7	7	B.1.637	0.000512
N	63	D63D	gaC	gaT	7	7	P.1	0.00011
N	63	D63S	GAc	AGc	6	6	AY.117	0.000507
N	63	D63S	GAc	AGc	6	6	AY.45	0.00073
N	63	D63S	GAc	AGc	6	6	AY.99.2	0.000553
N	63	D63G	gAc	gGc	6	6	B.1.160	0.000187
N	63	D63Y	Gac	Tac	6	6	B.1.429.1	0.072289
N	63	D63Y	Gac	Tac	6	6	B.1.628	0.002114
N	63	D63N	Gac	Aac	5	5	A.3	0.010482
N	63	D63L	GAc	CTc	3	5	All	0.000001
N	63	D63F	GAc	TTc	3	5	All	0.000001
N	63	D63del1	gAc	g-c	3	5	All	0.000001
N	63	D63L	GAC	CTT	2	5	All	0
N	63	D63F	GAC	TTT	2	5	All	0
N	63	D63del1	gAC	gG-	1	5	All	0
N	63	D63del1	gaC	ga-	1	5	All	0
N	63	D63S	GAc	AGc	5	5	AY.119	0.000177
N	63	D63V	gAc	gTc	5	5	AY.44	0.00003
N	63	D63C	GAc	TGc	5	5	AY.5	0.000103
N	63	D63V	gAc	gTc	5	5	AY.75.1	0.000902
N	63	D63D	gaC	gaT	5	5	B.1	0.000046
N	63	D63G	gAc	gGc	5	5	B.1.1.317	0.002058
N	63	D63G	gAc	gGc	5	5	B.1.1.53	0.068493
N	63	D63Y	Gac	Tac	5	5	B.1.160.8	0.006443
N	63	D63Y	Gac	Tac	5	5	B.1.177.85	0.027174
N	63	D63Y	Gac	Tac	5	5	B.1.243	0.000348
N	63	D63G	gAc	gGc	5	5	B.1.375	0.004098
N	63	D63D	gaC	gaT	5	5	B.1.429	0.000118
N	63	D63G	gAc	gGc	5	5	B.1.462	0.036232
N	63	D63N	Gac	Aac	5	5	B.1.575	0.001517
N	63	D63A	gAc	gCc	4	4	All	0.000001
N	63	D63S	GAc	AGc	4	4	AY.116	0.001147
N	63	D63V	gAc	gTc	4	4	AY.119	0.000141
N	63	D63S	GAc	AGc	4	4	AY.26	0.000113
N	63	D63C	GAc	TGc	4	4	AY.3	0.00004
N	63	D63E	gaC	gaA	4	4	AY.4	0.000006
N	63	D63C	GAc	TGc	4	4	AY.44	0.000024
N	63	D63D	gaC	gaT	4	4	B.1.1	0.000073
N	63	D63D	gaC	gaT	4	4	B.1.1.29	0.041237
N	63	D63N	Gac	Aac	4	4	B.1.1.58	0.021505
N	63	D63G	gAc	gGc	4	4	B.1.157	0.01194
N	63	D63Y	Gac	Tac	4	4	B.1.160	0.000125
N	63	D63E	gaC	gaA	4	4	B.1.2	0.000035
N	63	D63G	gAc	gGc	4	4	B.1.466.2	0.001565
N	63	D63D	gaC	gaT	4	4	B.1.526	0.000094
N	63	D63N	Gac	Aac	4	4	B.1.582	0.001963
N	63	D63Y	Gac	Tac	4	4	B.1.617.1	0.000516
N	63	D63N	Gac	Aac	4	4	D.2	0.0003
N	63	D63Y	Gac	Tac	4	4	P.1.14	0.000191
N	63	D63G	gAc	gGc	3	3		0.166667
N	63	D63I	GAc	ATc	3	3	All	0.000001
N	63	D63V	gAc	gTc	3	3	AY.100	0.000138
N	63	D63V	gAc	gTc	3	3	AY.121	0.000406
N	63	D63S	GAc	AGc	3	3	AY.14	0.000264
N	63	D63V	gAc	gTc	3	3	AY.26	0.000085
N	63	D63S	GAc	AGc	3	3	AY.32	0.001597
N	63	D63V	gAc	gTc	3	3	AY.42	0.000121
N	63	D63I	GAc	ATc	3	3	AY.44	0.000018
N	63	D63S	GAc	AGc	3	3	AY.46	0.000312
N	63	D63V	gAc	gTc	3	3	AY.51	0.002727
N	63	D63C	GAc	TGc	3	3	AY.98.1	0.000145
N	63	D63Y	Gac	Tac	3	3	B.1.1.1	0.00098
N	63	D63Y	Gac	Tac	3	3	B.1.1.222	0.000612
N	63	D63G	gAc	gGc	3	3	B.1.1.294	0.003797
N	63	D63E	gaC	gaA	3	3	B.1.1.416	0.002715
N	63	D63Y	Gac	Tac	3	3	B.1.177.21	0.000229
N	63	D63D	gaC	gaT	3	3	B.1.214.2	0.001799
N	63	D63N	Gac	Aac	3	3	B.1.258	0.0002
N	63	D63Y	Gac	Tac	3	3	B.1.258.17	0.000312
N	63	D63Y	Gac	Tac	3	3	B.1.351	0.000089
N	63	D63D	gaC	gaT	3	3	B.1.36	0.000438
N	63	D63Y	Gac	Tac	3	3	B.1.367	0.002377
N	63	D63Y	Gac	Tac	3	3	B.1.427	0.000151
N	63	D63N	Gac	Aac	3	3	B.1.429	0.000071
N	63	D63G	gAc	gGc	3	3	B.1.432	0.033708
N	63	D63G	gAc	gGc	3	3	B.1.474	0.005703
N	63	D63N	Gac	Aac	3	3	B.1.525	0.000339
N	63	D63Y	Gac	Tac	3	3	B.1.525	0.000339
N	63	D63Y	Gac	Tac	3	3	B.1.575	0.00091
N	63	D63Y	Gac	Tac	3	3	B.1.596	0.000261
N	63	D63G	gAc	gGc	3	3	B.1.609	0.001438
N	63	D63Y	Gac	Tac	3	3	B.1.619.1	0.001924
N	63	D63N	Gac	Aac	3	3	B.1.621	0.000266
N	63	D63G	gAc	gGc	3	3	B.40	0.001093
N	63	D63Y	Gac	Tac	3	3	C.37	0.000348
N	63	D63Y	Gac	Tac	3	3	D.2	0.000225
N	63	D63H	Gac	Cac	3	3	P.1	0.000047
N	63	D63G	gAc	gGc	3	3	P.1.1	0.000953
N	63	D63G	gAc	gGc	3	3	P.1.7	0.000958
N	63	D63H	Gac	Cac	3	3	R.1	0.00027
N	63	D63G	gAc	gGc	2	2	A.2.5	0.000998
N	63	D63C	GAc	TGc	2	2	AY.102	0.000053
N	63	D63V	gAc	gTc	2	2	AY.110	0.000225
N	63	D63S	GAc	AGc	2	2	AY.118	0.000125
N	63	D63S	GAc	AGc	2	2	AY.20	0.000078
N	63	D63C	GAc	TGc	2	2	AY.26	0.000057
N	63	D63S	GAc	AGc	2	2	AY.4.2	0.000043
N	63	D63H	Gac	Cac	1	2	AY.43	0.000004
N	63	D63F	GAc	TTc	1	2	AY.43	0.000004
N	63	D63Y	GaC	TaT	1	2	AY.43	0.000004
N	63	D63L	GAC	CTT	1	2	AY.43	0.000004
N	63	D63H	GaC	CaT	1	2	AY.43	0.000004
N	63	D63F	GAC	TTT	1	2	AY.43	0.000004
N	63	D63Y	Gac	Tac	1	2	AY.43	0.000004
N	63	D63L	GAc	CTc	1	2	AY.43	0.000004
N	63	D63R	GAc	CGc	2	2	AY.44	0.000012
N	63	D63S	GAc	AGc	2	2	AY.46.3	0.001867
N	63	D63V	gAc	gTc	2	2	AY.47	0.000062
N	63	D63V	gAc	gTc	2	2	AY.5	0.000041
N	63	D63S	GAc	AGc	2	2	AY.54	0.000191
N	63	D63S	GAc	AGc	2	2	AY.61	0.00021
N	63	D63C	GAc	TGc	2	2	AY.70	0.000417
N	63	D63S	GAc	AGc	2	2	AY.84	0.000875
N	63	D63C	GAc	TGc	2	2	AY.9	0.000135
N	63	D63S	GAc	AGc	2	2	AY.9.2	0.000073
N	63	D63F	GAC	TTT	1	2	AY.99	0.001049
N	63	D63C	GAc	TGc	1	2	AY.99	0.001049
N	63	D63L	GAC	CTT	1	2	AY.99	0.001049
N	63	D63L	GAc	CTc	1	2	AY.99	0.001049
N	63	D63R	GAc	CGc	1	2	AY.99	0.001049
N	63	D63R	GAC	CGT	1	2	AY.99	0.001049
N	63	D63F	GAc	TTc	1	2	AY.99	0.001049
N	63	D63C	GAC	TGT	1	2	AY.99	0.001049
N	63	D63N	Gac	Aac	2	2	B	0.000256
N	63	D63Y	Gac	Tac	2	2	B.1.1.198	0.002937
N	63	D63N	Gac	Aac	2	2	B.1.1.214	0.000111
N	63	D63D	gaC	gaT	2	2	B.1.1.222	0.000408
N	63	D63H	Gac	Cac	2	2	B.1.1.253	0.005013
N	63	D63Y	Gac	Tac	2	2	B.1.1.28	0.000622
N	63	D63Y	Gac	Tac	2	2	B.1.1.311	0.000716
N	63	D63D	gaC	gaT	2	2	B.1.1.318	0.000604
N	63	D63N	Gac	Aac	2	2	B.1.1.318	0.000604
N	63	D63G	gAc	gGc	2	2	B.1.1.432	0.002532
N	63	D63G	gAc	gGc	2	2	B.1.1.448	0.004065
N	63	D63N	Gac	Aac	2	2	B.1.1.519	0.000079
N	63	D63D	gaC	gaT	2	2	B.1.1.521	0.010695
N	63	D63N	Gac	Aac	2	2	B.1.1.63	0.000772
N	63	D63V	gAc	gTc	2	2	B.1.1.7	0.000002
N	63	D63D	gaC	gaT	2	2	B.1.160	0.000062
N	63	D63N	Gac	Aac	2	2	B.1.160.15	0.009901
N	63	D63D	gaC	gaT	2	2	B.1.177	0.000026
N	63	D63N	Gac	Aac	2	2	B.1.210	0.004264
N	63	D63G	gAc	gGc	2	2	B.1.221	0.000142
N	63	D63Y	Gac	Tac	2	2	B.1.221	0.000142
N	63	D63Y	Gac	Tac	2	2	B.1.232	0.001075
N	63	D63D	gaC	gaT	2	2	B.1.232	0.001075
N	63	D63Y	Gac	Tac	2	2	B.1.238	0.029851
N	63	D63G	gAc	gGc	2	2	B.1.243	0.000139
N	63	D63D	gaC	gaT	2	2	B.1.258	0.000133
N	63	D63Y	Gac	Tac	2	2	B.1.258.3	0.00335
N	63	D63G	gAc	gGc	2	2	B.1.260	0.006689
N	63	D63N	Gac	Aac	2	2	B.1.284	0.026316
N	63	D63D	gaC	gaT	2	2	B.1.311	0.000549
N	63	D63G	gAc	gGc	2	2	B.1.325	0.013793
N	63	D63H	Gac	Cac	2	2	B.1.334	0.036364
N	63	D63N	Gac	Aac	2	2	B.1.349	0.00143
N	63	D63N	Gac	Aac	2	2	B.1.351	0.000059
N	63	D63Y	Gac	Tac	2	2	B.1.351.2	0.000605
N	63	D63G	gAc	gGc	2	2	B.1.369	0.00057
N	63	D63G	gAc	gGc	2	2	B.1.378	0.013699
N	63	D63G	gAc	gGc	2	2	B.1.400	0.000858
N	63	D63H	Gac	Cac	2	2	B.1.433	0.00639
N	63	D63N	Gac	Aac	2	2	B.1.473	0.038462
N	63	D63Y	Gac	Tac	2	2	B.1.517	0.000854
N	63	D63G	gAc	gGc	2	2	B.1.582	0.000981
N	63	D63G	gAc	gGc	2	2	B.1.604	0.034483
N	63	D63H	Gac	Cac	2	2	B.1.617.1	0.000258
N	63	D63A	gAc	gCc	2	2	B.1.617.2	0.000008
N	63	D63del1	gAc	g-c	2	2	B.1.617.2	0.000008
N	63	D63N	Gac	Aac	2	2	B.1.621.1	0.001012
N	63	D63G	gAc	gGc	2	2	B.1.629	0.026667
N	63	D63D	gaC	gaT	2	2	B.1.629	0.026667
N	63	D63G	gAc	gGc	2	2	B.1.637	0.000146
N	63	D63G	gAc	gGc	2	2	B.1.81	0.042553
N	63	D63H	Gac	Cac	2	2	B.1.88.1	0.009615
N	63	D63Y	Gac	Tac	2	2	B.29	0.007018
N	63	D63N	Gac	Aac	2	2	B.55	0.0059
N	63	D63G	gAc	gGc	2	2	C.36.3	0.001134
N	63	D63D	gaC	gaT	2	2	C.37	0.000232
N	63	D63Y	Gac	Tac	2	2	P.1.13	0.001797
N	63	D63D	gaC	gaT	2	2	P.1.14	0.000096
N	63	D63G	gAc	gGc	2	2	P.1.17	0.000324
N	63	D63G	gAc	gGc	2	2	P.2	0.000373
N	63	D63N	Gac	Aac	2	2	P.2	0.000373
N	63	D63H	Gac	Cac	2	2	P.2	0.000373
N	63	D63N	Gac	Aac	2	2	Q.4	0.00091
N	63	D63Y	Gac	Tac	2	2	Q.8	0.00033
N	63	D63Y	Gac	Tac	1	1	A	0.000387
N	63	D63G	gAc	gGc	1	1	A.1	0.000282
N	63	D63Y	Gac	Tac	1	1	A.1	0.000282
N	63	D63N	Gac	Aac	1	1	A.2	0.000662
N	63	D63Y	Gac	Tac	1	1	AE.5	0.018519
N	63	D63G	gAc	gGc	1	1	AU.2	0.002421
N	63	D63C	GAc	TGc	1	1	AY.100	0.000046
N	63	D63S	GAc	AGc	1	1	AY.102	0.000027
N	63	D63C	GAc	TGc	1	1	AY.103	0.000006
N	63	D63R	GAc	CGc	1	1	AY.110	0.000113
N	63	D63L	GAc	CTc	1	1	AY.110	0.000113
N	63	D63V	gAc	gTc	1	1	AY.113	0.000142
N	63	D63C	GAc	TGc	1	1	AY.117	0.000085
N	63	D63S	GAc	AGc	1	1	AY.120	0.000037
N	63	D63C	GAc	TGc	1	1	AY.121	0.000135
N	63	D63S	GAc	AGc	1	1	AY.121	0.000135
N	63	D63Y	Gac	Tac	1	1	AY.121	0.000135
N	63	D63V	gAc	gTc	1	1	AY.20	0.000039
N	63	D63V	gAc	gTc	1	1	AY.23	0.00007
N	63	D63C	GAc	TGc	1	1	AY.23	0.00007
N	63	D63S	GAc	AGc	1	1	AY.23	0.00007
N	63	D63S	GAc	AGc	1	1	AY.27	0.000065
N	63	D63S	GAc	AGc	1	1	AY.29	0.000016
N	63	D63del	GAC	---	1	1	AY.3	0.00001
N	63	D63V	gAc	gTc	1	1	AY.32	0.000532
N	63	D63S	GAc	AGc	1	1	AY.33	0.000067
N	63	D63S	GAc	AGc	1	1	AY.39	0.000025
N	63	D63V	gAc	gTc	1	1	AY.4.5	0.000107
N	63	D63R	GAc	CGc	1	1	AY.42	0.00004
N	63	D63E	gaC	gaG	1	1	AY.43	0.000004
N	63	D63R	GAc	CGc	1	1	AY.43	0.000004
N	63	D63del	GAC	---	1	1	AY.43	0.000004
N	63	D63F	GAc	TTc	1	1	AY.44	0.000006
N	63	D63V	gAc	gTc	1	1	AY.45	0.000122
N	63	D63R	GAc	CGc	1	1	AY.45	0.000122
N	63	D63S	GAc	AGc	1	1	AY.46.4	0.000165
N	63	D63V	gAc	gTc	1	1	AY.46.6	0.000072
N	63	D63C	GAc	TGc	1	1	AY.48	0.000465
N	63	D63S	GAc	AGc	1	1	AY.5	0.000021
N	63	D63V	gAc	gTc	1	1	AY.5.4	0.000277
N	63	D63C	GAc	TGc	1	1	AY.54	0.000095
N	63	D63C	GAc	TGc	1	1	AY.57	0.000656
N	63	D63S	GAc	AGc	1	1	AY.57	0.000656
N	63	D63V	gAc	gTc	1	1	AY.59	0.00053
N	63	D63C	GAc	TGc	1	1	AY.6	0.000041
N	63	D63S	GAc	AGc	1	1	AY.62	0.000436
N	63	D63V	gAc	gTc	1	1	AY.67	0.000464
N	63	D63C	GAc	TGc	1	1	AY.67	0.000464
N	63	D63del	GAC	---	1	1	AY.67	0.000464
N	63	D63C	GAc	TGc	1	1	AY.7	0.000196
N	63	D63C	GAc	TGc	1	1	AY.7.1	0.000113
N	63	D63S	GAc	AGc	1	1	AY.75	0.000056
N	63	D63V	gAc	gTc	1	1	AY.75	0.000056
N	63	D63R	GAc	CGc	1	1	AY.75.1	0.00018
N	63	D63S	GAc	AGc	1	1	AY.76	0.004831
N	63	D63V	gAc	gTc	1	1	AY.84	0.000437
N	63	D63V	gAc	gTc	1	1	AY.85	0.000427
N	63	D63S	GAc	AGc	1	1	AY.9.1	0.000084
N	63	D63C	GAc	TGc	1	1	AY.9.1	0.000084
N	63	D63del	GAC	---	1	1	AY.9.2	0.000037
N	63	D63S	GAc	AGc	1	1	AY.92	0.000287
N	63	D63V	gAc	gTc	1	1	AY.98	0.000079
N	63	D63S	GAc	AGc	1	1	AY.98	0.000079
N	63	D63V	gAc	gTc	1	1	AY.99	0.001049
N	63	D63del1	gAC	gG-	1	1	AY.99	0.001049
N	63	D63Y	Gac	Tac	1	1	AZ.1	0.000867
N	63	D63Y	Gac	Tac	1	1	AZ.2	0.000821
N	63	D63Y	Gac	Tac	1	1	B	0.000128
N	63	D63del	GAC	---	1	1	B.1	0.000009
N	63	D63E	gaC	gaA	1	1	B.1	0.000009
N	63	D63E	gaC	gaA	1	1	B.1.1	0.000018
N	63	D63del	GAC	---	1	1	B.1.1	0.000018
N	63	D63G	gAc	gGc	1	1	B.1.1.10	0.001115
N	63	D63del	GAC	---	1	1	B.1.1.139	0.022727
N	63	D63Y	Gac	Tac	1	1	B.1.1.157	0.000913
N	63	D63G	gAc	gGc	1	1	B.1.1.161	0.003534
N	63	D63Y	Gac	Tac	1	1	B.1.1.164	0.005155
N	63	D63N	Gac	Aac	1	1	B.1.1.176	0.000439
N	63	D63D	gaC	gaT	1	1	B.1.1.214	0.000055
N	63	D63del	GAC	---	1	1	B.1.1.216	0.00089
N	63	D63Y	Gac	Tac	1	1	B.1.1.216	0.00089
N	63	D63del1	gaC	ga-	1	1	B.1.1.216	0.00089
N	63	D63N	Gac	Aac	1	1	B.1.1.222	0.000204
N	63	D63G	gAc	gGc	1	1	B.1.1.28	0.000311
N	63	D63H	Gac	Cac	1	1	B.1.1.28	0.000311
N	63	D63N	Gac	Aac	1	1	B.1.1.28	0.000311
N	63	D63Y	Gac	Tac	1	1	B.1.1.298	0.000862
N	63	D63Y	Gac	Tac	1	1	B.1.1.306	0.000438
N	63	D63N	Gac	Aac	1	1	B.1.1.311	0.000358
N	63	D63N	Gac	Aac	1	1	B.1.1.312	0.001912
N	63	D63Y	Gac	Tac	1	1	B.1.1.316	0.000925
N	63	D63N	Gac	Aac	1	1	B.1.1.317	0.000412
N	63	D63N	Gac	Aac	1	1	B.1.1.322	0.008772
N	63	D63N	Gac	Aac	1	1	B.1.1.326	0.001761
N	63	D63G	gAc	gGc	1	1	B.1.1.326	0.001761
N	63	D63Y	Gac	Tac	1	1	B.1.1.33	0.000421
N	63	D63D	gaC	gaT	1	1	B.1.1.362	0.005618
N	63	D63H	Gac	Cac	1	1	B.1.1.39	0.00051
N	63	D63D	gaC	gaT	1	1	B.1.1.39	0.00051
N	63	D63G	gAc	gGc	1	1	B.1.1.409	0.002833
N	63	D63D	gaC	gaT	1	1	B.1.1.416	0.000905
N	63	D63G	gAc	gGc	1	1	B.1.1.416	0.000905
N	63	D63G	gAc	gGc	1	1	B.1.1.512	0.028571
N	63	D63G	gAc	gGc	1	1	B.1.1.523	0.001563
N	63	D63del	GAC	---	1	1	B.1.1.63	0.000386
N	63	D63del	GAC	---	1	1	B.1.1.7	0.000001
N	63	D63A	gAc	gCc	1	1	B.1.1.7	0.000001
N	63	D63S	GAc	TCc	1	1	B.1.1.7	0.000001
N	63	D63D	gaC	gaT	1	1	B.1.1.70	0.000341
N	63	D63Y	Gac	Tac	1	1	B.1.1.70	0.000341
N	63	D63H	Gac	Cac	1	1	B.1.1.83	0.00271
N	63	D63N	Gac	Aac	1	1	B.1.127	0.002198
N	63	D63G	gAc	gGc	1	1	B.1.170	0.00431
N	63	D63A	gAc	gCc	1	1	B.1.177	0.000013
N	63	D63E	gaC	gaA	1	1	B.1.177	0.000013
N	63	D63Y	Gac	Tac	1	1	B.1.177.18	0.00116
N	63	D63Y	Gac	Tac	1	1	B.1.177.23	0.003236
N	63	D63N	Gac	Aac	1	1	B.1.177.41	0.0025
N	63	D63Y	Gac	Tac	1	1	B.1.177.45	0.000381
N	63	D63Y	Gac	Tac	1	1	B.1.177.46	0.000918
N	63	D63N	Gac	Aac	1	1	B.1.177.56	0.000668
N	63	D63Y	Gac	Tac	1	1	B.1.177.56	0.000668
N	63	D63N	Gac	Aac	1	1	B.1.177.58	0.001332
N	63	D63D	gaC	gaT	1	1	B.1.177.60	0.000218
N	63	D63N	Gac	Aac	1	1	B.1.177.60	0.000218
N	63	D63N	Gac	Aac	1	1	B.1.177.62	0.001192
N	63	D63del	GAC	---	1	1	B.1.177.63	0.002703
N	63	D63Y	Gac	Tac	1	1	B.1.177.72	0.00339
N	63	D63Y	Gac	Tac	1	1	B.1.177.73	0.000566
N	63	D63Y	Gac	Tac	1	1	B.1.177.76	0.002494
N	63	D63Y	Gac	Tac	1	1	B.1.177.81	0.000189
N	63	D63N	Gac	Aac	1	1	B.1.177.83	0.001481
N	63	D63Y	Gac	Tac	1	1	B.1.177.83	0.001481
N	63	D63Y	Gac	Tac	1	1	B.1.177.9	0.001332
N	63	D63G	gAc	gGc	1	1	B.1.179	0.003759
N	63	D63R	GAc	CGc	1	1	B.1.2	0.000009
N	63	D63G	gAc	gGc	1	1	B.1.208	0.04
N	63	D63G	gAc	gGc	1	1	B.1.218	0.005155
N	63	D63N	Gac	Aac	1	1	B.1.221	0.000071
N	63	D63Y	Gac	Tac	1	1	B.1.234	0.000132
N	63	D63Y	Gac	Tac	1	1	B.1.240	0.000216
N	63	D63G	gAc	gGc	1	1	B.1.240	0.000216
N	63	D63N	Gac	Aac	1	1	B.1.240	0.000216
N	63	D63D	gaC	gaT	1	1	B.1.243	0.00007
N	63	D63G	gAc	gGc	1	1	B.1.247	0.014925
N	63	D63G	gAc	gGc	1	1	B.1.258	0.000067
N	63	D63G	gAc	gGc	1	1	B.1.258.11	0.000396
N	63	D63del	GAC	---	1	1	B.1.258.11	0.000396
N	63	D63D	gaC	gaT	1	1	B.1.258.17	0.000104
N	63	D63N	Gac	Aac	1	1	B.1.258.17	0.000104
N	63	D63Y	Gac	Tac	1	1	B.1.280	0.007143
N	63	D63G	gAc	gGc	1	1	B.1.301	0.005917
N	63	D63Y	Gac	Tac	1	1	B.1.301	0.005917
N	63	D63N	Gac	Aac	1	1	B.1.323	0.020833
N	63	D63G	gAc	gGc	1	1	B.1.323	0.020833
N	63	D63G	gAc	gGc	1	1	B.1.335	0.010309
N	63	D63G	gAc	gGc	1	1	B.1.340	0.004292
N	63	D63Y	Gac	Tac	1	1	B.1.351.5	0.0006
N	63	D63G	gAc	gGc	1	1	B.1.351.5	0.0006
N	63	D63G	gAc	gGc	1	1	B.1.355	0.011111
N	63	D63Y	Gac	Tac	1	1	B.1.36	0.000146
N	63	D63G	gAc	gGc	1	1	B.1.36.10	0.004785
N	63	D63N	Gac	Aac	1	1	B.1.36.29	0.000517
N	63	D63G	gAc	gGc	1	1	B.1.36.29	0.000517
N	63	D63G	gAc	gGc	1	1	B.1.366	0.004878
N	63	D63G	gAc	gGc	1	1	B.1.367	0.000792
N	63	D63N	Gac	Aac	1	1	B.1.369	0.000285
N	63	D63D	gaC	gaT	1	1	B.1.369	0.000285
N	63	D63Y	Gac	Tac	1	1	B.1.375	0.00082
N	63	D63G	gAc	gGc	1	1	B.1.380	0.006623
N	63	D63Y	Gac	Tac	1	1	B.1.398	0.002976
N	63	D63Y	Gac	Tac	1	1	B.1.400	0.000429
N	63	D63G	gAc	gGc	1	1	B.1.404	0.001302
N	63	D63V	gAc	gTc	1	1	B.1.416	0.001269
N	63	D63G	gAc	gGc	1	1	B.1.427	0.00005
N	63	D63G	gAc	gGc	1	1	B.1.429	0.000024
N	63	D63del	GAC	---	1	1	B.1.429	0.000024
N	63	D63G	gAc	gGc	1	1	B.1.433	0.003195
N	63	D63del	GAC	---	1	1	B.1.439	0.005917
N	63	D63N	Gac	Aac	1	1	B.1.470	0.001404
N	63	D63H	Gac	Cac	1	1	B.1.471	0.002732
N	63	D63D	gaC	gaT	1	1	B.1.480	0.002488
N	63	D63G	gAc	gGc	1	1	B.1.485	0.014925
N	63	D63N	Gac	Aac	1	1	B.1.509	0.000866
N	63	D63del1	gAc	g-c	1	1	B.1.523	0.002451
N	63	D63N	Gac	Aac	1	1	B.1.524	0.001406
N	63	D63G	gAc	gGc	1	1	B.1.525	0.000113
N	63	D63H	Gac	Cac	1	1	B.1.526	0.000024
N	63	D63G	gAc	gGc	1	1	B.1.530	0.007143
N	63	D63G	gAc	gGc	1	1	B.1.537	0.02
N	63	D63G	gAc	gGc	1	1	B.1.551	0.00129
N	63	D63G	gAc	gGc	1	1	B.1.560	0.00463
N	63	D63G	gAc	gGc	1	1	B.1.564	0.000426
N	63	D63Y	Gac	Tac	1	1	B.1.564	0.000426
N	63	D63N	Gac	Aac	1	1	B.1.568	0.001111
N	63	D63G	gAc	gGc	1	1	B.1.573	0.006098
N	63	D63D	gaC	gaT	1	1	B.1.575	0.000303
N	63	D63Y	Gac	Tac	1	1	B.1.575.1	0.002439
N	63	D63G	gAc	gGc	1	1	B.1.577	0.000687
N	63	D63G	gAc	gGc	1	1	B.1.580	0.004065
N	63	D63G	gAc	gGc	1	1	B.1.581	0.009434
N	63	D63Y	Gac	Tac	1	1	B.1.582	0.000491
N	63	D63G	gAc	gGc	1	1	B.1.586	0.010989
N	63	D63Y	Gac	Tac	1	1	B.1.588	0.00091
N	63	D63N	Gac	Aac	1	1	B.1.593	0.01087
N	63	D63G	gAc	gGc	1	1	B.1.595	0.000261
N	63	D63D	gaC	gaT	1	1	B.1.595	0.000261
N	63	D63D	gaC	gaT	1	1	B.1.596	0.000087
N	63	D63N	Gac	Aac	1	1	B.1.596	0.000087
N	63	D63G	gAc	gGc	1	1	B.1.599	0.00365
N	63	D63G	gAc	gGc	1	1	B.1.600	0.005848
N	63	D63Y	Gac	Tac	1	1	B.1.612	0.002653
N	63	D63D	gaC	gaT	1	1	B.1.617.1	0.000129
N	63	D63N	Gac	Aac	1	1	B.1.617.1	0.000129
N	63	D63del	GAC	---	1	1	B.1.617.2	0.000004
N	63	D63D	gaC	gaT	1	1	B.1.619	0.000871
N	63	D63G	gAc	gGc	1	1	B.1.619	0.000871
N	63	D63G	gAc	gGc	1	1	B.1.621.1	0.000506
N	63	D63G	gAc	gGc	1	1	B.1.627	0.00202
N	63	D63G	gAc	gGc	1	1	B.1.631	0.003367
N	63	D63G	gAc	gGc	1	1	B.1.632	0.006711
N	63	D63G	gAc	gGc	1	1	B.1.634	0.003425
N	63	D63H	Gac	Cac	1	1	B.1.637	0.000073
N	63	D63D	gaC	gaT	1	1	B.1.637	0.000073
N	63	D63E	gaC	gaA	1	1	B.1.91	0.002075
N	63	D63G	gAc	gGc	1	1	B.55	0.00295
N	63	D63N	Gac	Aac	1	1	B.6	0.00091
N	63	D63G	gAc	gGc	1	1	C.30	0.001727
N	63	D63Y	Gac	Tac	1	1	C.36.3	0.000567
N	63	D63G	gAc	gGc	1	1	C.37	0.000116
N	63	D63G	gAc	gGc	1	1	C.37.1	0.002618
N	63	D63E	gaC	gaG	1	1	P.1	0.000016
N	63	D63N	Gac	Aac	1	1	P.1	0.000016
N	63	D63Y	Gac	Tac	1	1	P.1.1	0.000318
N	63	D63Y	Gac	Tac	1	1	P.1.10	0.000269
N	63	D63D	gaC	gaT	1	1	P.1.12	0.000484
N	63	D63N	Gac	Aac	1	1	P.1.14	0.000048
N	63	D63G	gAc	gGc	1	1	P.1.14	0.000048
N	63	D63D	gaC	gaT	1	1	P.1.17	0.000162
N	63	D63Y	Gac	Tac	1	1	P.6	0.003145
N	63	D63Y	Gac	Tac	1	1	Q.1	0.000126
N	63	D63D	gaC	gaT	1	1	Q.8	0.000165
N	63	D63N	Gac	Aac	1	1	R.1	0.00009
N	63	D63Y	Gac	Tac	1	1	R.1	0.00009
N	63	D63E	gaC	gaA	1	1	Y.1	0.012821

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.