CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 60 | G60G | syn | ggC | ggT | 4983 | 4926 | 0.988561 | 28451-28453 | |
N | 60 | G60G | syn | ggC | ggG | 4983 | 37 | 0.00742525 | 28451-28453 | |
N | 60 | G60G | syn | ggC | ggA | 4983 | 20 | 0.00401365 | 28451-28453 | |
N | 60 | G60R | nonsyn | Ggc | Cgc | 567 | 562 | 0.991182 | 28451-28453 | |
N | 60 | G60R | nonsyn | GgC | CgT | 567 | 1 | 0.00176367 | 28451-28453 | |
N | 60 | G60R | nonsyn | GgC | CgG | 567 | 1 | 0.00176367 | 28451-28453 | |
N | 60 | G60R | nonsyn | GgC | AgA | 567 | 1 | 0.00176367 | 28451-28453 | |
N | 60 | G60R | nonsyn | GgC | AgG | 567 | 1 | 0.00176367 | 28451-28453 | |
N | 60 | G60R | nonsyn | GgC | CgA | 567 | 1 | 0.00176367 | 28451-28453 | |
N | 60 | G60C | nonsyn | Ggc | Tgc | 174 | 166 | 0.954023 | 28451-28453 | |
N | 60 | G60C | nonsyn | GgC | TgT | 174 | 8 | 0.045977 | 28451-28453 | |
N | 60 | G60S | nonsyn | Ggc | Agc | 156 | 156 | 1 | 28451-28453 | |
N | 60 | G60V | nonsyn | gGc | gTc | 44 | 42 | 0.954545 | 28451-28453 | |
N | 60 | G60V | nonsyn | gGC | gTA | 44 | 1 | 0.0227273 | 28451-28453 | |
N | 60 | G60V | nonsyn | gGC | gTG | 44 | 1 | 0.0227273 | 28451-28453 | |
N | 60 | G60D | nonsyn | gGc | gAc | 9 | 9 | 1 | 28451-28453 | |
N | 60 | G60del | del | GGC | --- | 8 | 8 | 1 | 28451-28453 | |
N | 60 | G60A | nonsyn | gGc | gCc | 8 | 6 | 0.75 | 28451-28453 | |
N | 60 | G60A | nonsyn | gGC | gCG | 8 | 1 | 0.125 | 28451-28453 | |
N | 60 | G60A | nonsyn | gGC | gCA | 8 | 1 | 0.125 | 28451-28453 | |
N | 60 | G60del1 | del | Ggc | -gc | 6 | 4 | 0.666667 | 28451-28453 | |
N | 60 | G60del1 | del | GGc | -Ac | 6 | 1 | 0.166667 | 28451-28453 | |
N | 60 | G60del1 | del | ggC | gg- | 6 | 1 | 0.166667 | 28451-28453 | |
N | 60 | G60T | nonsyn | GGc | ACc | 4 | 2 | 0.5 | 28451-28453 | |
N | 60 | G60T | nonsyn | GGC | ACA | 4 | 1 | 0.25 | 28451-28453 | |
N | 60 | G60T | nonsyn | GGC | ACG | 4 | 1 | 0.25 | 28451-28453 | |
N | 60 | G60L | nonsyn | GGC | CTG | 3 | 1 | 0.333333 | 28451-28453 | |
N | 60 | G60L | nonsyn | GGc | CTc | 3 | 1 | 0.333333 | 28451-28453 | |
N | 60 | G60L | nonsyn | GGC | CTA | 3 | 1 | 0.333333 | 28451-28453 | |
N | 60 | G60P | nonsyn | GGC | CCG | 3 | 1 | 0.333333 | 28451-28453 | |
N | 60 | G60P | nonsyn | GGc | CCc | 3 | 1 | 0.333333 | 28451-28453 | |
N | 60 | G60P | nonsyn | GGC | CCA | 3 | 1 | 0.333333 | 28451-28453 | |
N | 60 | G60del2 | del | GGc | --c | 2 | 2 | 1 | 28451-28453 | |
N | 60 | G60X | nonsyn | GgC | TgA | 2 | 1 | 0.5 | 28451-28453 | |
N | 60 | G60I | nonsyn | GGc | ATc | 2 | 1 | 0.5 | 28451-28453 | |
N | 60 | G60I | nonsyn | GGC | ATA | 2 | 1 | 0.5 | 28451-28453 | |
N | 60 | G60X | nonsyn | GGC | TAA | 2 | 1 | 0.5 | 28451-28453 | |
N | 60 | G60Y | nonsyn | GGc | TAc | 1 | 1 | 1 | 28451-28453 | |
N | 60 | G60E | nonsyn | gGC | gAA | 1 | 1 | 1 | 28451-28453 | |
N | 60 | G60M | nonsyn | GGC | ATG | 1 | 1 | 1 | 28451-28453 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 60 | G60G | ggC | ggT | 4926 | 4983 | All | 0.000942 |
N | 60 | G60G | ggC | ggG | 37 | 4983 | All | 0.000007 |
N | 60 | G60G | ggC | ggA | 20 | 4983 | All | 0.000004 |
N | 60 | G60G | ggC | ggT | 728 | 739 | B.1.1.7 | 0.000652 |
N | 60 | G60G | ggC | ggG | 8 | 739 | B.1.1.7 | 0.000007 |
N | 60 | G60G | ggC | ggA | 3 | 739 | B.1.1.7 | 0.000003 |
N | 60 | G60R | Ggc | Cgc | 562 | 567 | All | 0.000107 |
N | 60 | G60R | GgC | AgA | 1 | 567 | All | 0 |
N | 60 | G60R | GgC | CgA | 1 | 567 | All | 0 |
N | 60 | G60R | GgC | CgT | 1 | 567 | All | 0 |
N | 60 | G60R | GgC | AgG | 1 | 567 | All | 0 |
N | 60 | G60R | GgC | CgG | 1 | 567 | All | 0 |
N | 60 | G60R | Ggc | Cgc | 384 | 384 | B.1.1.7 | 0.000344 |
N | 60 | G60G | ggC | ggT | 341 | 342 | B.1.617.2 | 0.001284 |
N | 60 | G60G | ggC | ggA | 1 | 342 | B.1.617.2 | 0.000004 |
N | 60 | G60G | ggC | ggT | 321 | 321 | AY.4 | 0.0005 |
N | 60 | G60G | ggC | ggT | 270 | 270 | B.1.429 | 0.006353 |
N | 60 | G60G | ggC | ggT | 231 | 258 | B.1.2 | 0.002034 |
N | 60 | G60G | ggC | ggG | 27 | 258 | B.1.2 | 0.000238 |
N | 60 | G60G | ggC | ggT | 258 | 258 | P.1.14 | 0.012333 |
N | 60 | G60G | ggC | ggT | 253 | 253 | P.1 | 0.003986 |
N | 60 | G60G | ggC | ggT | 202 | 204 | B.1 | 0.00185 |
N | 60 | G60G | ggC | ggA | 2 | 204 | B.1 | 0.000018 |
N | 60 | G60C | Ggc | Tgc | 166 | 174 | All | 0.000032 |
N | 60 | G60C | GgC | TgT | 8 | 174 | All | 0.000002 |
N | 60 | G60G | ggC | ggT | 161 | 161 | B.1.532 | 1 |
N | 60 | G60S | Ggc | Agc | 156 | 156 | All | 0.00003 |
N | 60 | G60G | ggC | ggT | 148 | 148 | C.2.1 | 0.986667 |
N | 60 | G60G | ggC | ggT | 117 | 117 | AY.102 | 0.003102 |
N | 60 | G60G | ggC | ggT | 115 | 115 | B.1.1.329 | 0.442308 |
N | 60 | G60G | ggC | ggT | 104 | 107 | B.1.177 | 0.001369 |
N | 60 | G60G | ggC | ggA | 3 | 107 | B.1.177 | 0.00004 |
N | 60 | G60G | ggC | ggT | 93 | 93 | AD.2 | 0.020363 |
N | 60 | G60G | ggC | ggT | 79 | 79 | AY.103 | 0.000491 |
N | 60 | G60G | ggC | ggT | 78 | 78 | AY.43 | 0.000346 |
N | 60 | G60G | ggC | ggT | 75 | 75 | AY.25 | 0.000451 |
N | 60 | G60G | ggC | ggT | 73 | 75 | B.1.1 | 0.001324 |
N | 60 | G60G | ggC | ggA | 1 | 75 | B.1.1 | 0.000018 |
N | 60 | G60G | ggC | ggG | 1 | 75 | B.1.1 | 0.000018 |
N | 60 | G60G | ggC | ggT | 57 | 57 | B.1.1.420 | 0.057344 |
N | 60 | G60G | ggC | ggT | 56 | 56 | B.1.36 | 0.00817 |
N | 60 | G60G | ggC | ggT | 52 | 52 | AY.44 | 0.000317 |
N | 60 | G60G | ggC | ggT | 52 | 52 | B.1.571 | 0.504854 |
N | 60 | G60G | ggC | ggT | 49 | 49 | AY.5 | 0.001012 |
N | 60 | G60S | Ggc | Agc | 48 | 48 | AY.4 | 0.000075 |
N | 60 | G60V | gGc | gTc | 42 | 44 | All | 0.000008 |
N | 60 | G60V | gGC | gTA | 1 | 44 | All | 0 |
N | 60 | G60V | gGC | gTG | 1 | 44 | All | 0 |
N | 60 | G60C | Ggc | Tgc | 41 | 41 | AY.4 | 0.000064 |
N | 60 | G60G | ggC | ggT | 41 | 41 | Q.6 | 0.271523 |
N | 60 | G60G | ggC | ggT | 40 | 40 | B.1.526 | 0.00094 |
N | 60 | G60G | ggC | ggT | 39 | 39 | AY.3 | 0.000388 |
N | 60 | G60G | ggC | ggT | 31 | 31 | C.2 | 0.5 |
N | 60 | G60G | ggC | ggT | 30 | 30 | AY.39 | 0.000741 |
N | 60 | G60G | ggC | ggT | 30 | 30 | B.1.1.318 | 0.009053 |
N | 60 | G60G | ggC | ggT | 25 | 25 | B.1.1.306 | 0.01096 |
N | 60 | G60G | ggC | ggT | 25 | 25 | B.1.351 | 0.000743 |
N | 60 | G60R | Ggc | Cgc | 23 | 23 | AS.2 | 0.359375 |
N | 60 | G60C | Ggc | Tgc | 15 | 22 | B.1.1.7 | 0.000013 |
N | 60 | G60C | GgC | TgT | 7 | 22 | B.1.1.7 | 0.000006 |
N | 60 | G60S | Ggc | Agc | 21 | 21 | B.1.1.7 | 0.000019 |
N | 60 | G60G | ggC | ggT | 19 | 19 | AY.117 | 0.001606 |
N | 60 | G60G | ggC | ggT | 19 | 19 | AY.29 | 0.0003 |
N | 60 | G60G | ggC | ggT | 18 | 18 | AY.33 | 0.001202 |
N | 60 | G60G | ggC | ggT | 18 | 18 | B.1.258 | 0.001198 |
N | 60 | G60R | Ggc | Cgc | 14 | 14 | B.1.561 | 0.005558 |
N | 60 | G60G | ggC | ggT | 14 | 14 | B.1.565 | 0.011345 |
N | 60 | G60G | ggC | ggT | 14 | 14 | P.2 | 0.002613 |
N | 60 | G60G | ggC | ggT | 13 | 13 | AY.106 | 0.004354 |
N | 60 | G60V | gGc | gTc | 13 | 13 | B.1.1.7 | 0.000012 |
N | 60 | G60G | ggC | ggT | 13 | 13 | B.1.243 | 0.000905 |
N | 60 | G60G | ggC | ggT | 12 | 12 | A.29 | 0.06383 |
N | 60 | G60G | ggC | ggT | 12 | 12 | B.1.1.207 | 0.014184 |
N | 60 | G60G | ggC | ggT | 12 | 12 | B.1.1.214 | 0.000665 |
N | 60 | G60G | ggC | ggT | 12 | 12 | B.1.1.397 | 0.027027 |
N | 60 | G60G | ggC | ggT | 12 | 12 | B.1.160 | 0.000374 |
N | 60 | G60G | ggC | ggT | 12 | 12 | B.1.234 | 0.001583 |
N | 60 | G60G | ggC | ggT | 11 | 11 | AY.75 | 0.000616 |
N | 60 | G60G | ggC | ggT | 11 | 11 | B.1.1.28 | 0.003424 |
N | 60 | G60G | ggC | ggT | 11 | 11 | B.1.221 | 0.000781 |
N | 60 | G60R | Ggc | Cgc | 10 | 10 | AY.102 | 0.000265 |
N | 60 | G60S | Ggc | Agc | 10 | 10 | AY.103 | 0.000062 |
N | 60 | G60R | Ggc | Cgc | 10 | 10 | AY.4 | 0.000016 |
N | 60 | G60G | ggC | ggT | 10 | 10 | B.1.1.222 | 0.00204 |
N | 60 | G60G | ggC | ggT | 10 | 10 | B.1.1.519 | 0.000397 |
N | 60 | G60G | ggC | ggT | 10 | 10 | B.1.490 | 1 |
N | 60 | G60C | Ggc | Tgc | 10 | 10 | B.1.617.2 | 0.000038 |
N | 60 | G60D | gGc | gAc | 9 | 9 | All | 0.000002 |
N | 60 | G60C | Ggc | Tgc | 9 | 9 | AY.43 | 0.00004 |
N | 60 | G60G | ggC | ggT | 9 | 9 | AY.98.1 | 0.000436 |
N | 60 | G60G | ggC | ggT | 9 | 9 | B.1.1.189 | 0.013616 |
N | 60 | G60G | ggC | ggT | 9 | 9 | B.1.1.326 | 0.015845 |
N | 60 | G60C | Ggc | Tgc | 9 | 9 | B.1.177 | 0.000119 |
N | 60 | G60R | Ggc | Cgc | 9 | 9 | B.1.617.2 | 0.000034 |
N | 60 | G60G | ggC | ggT | 9 | 9 | B.1.621 | 0.000797 |
N | 60 | G60del | GGC | --- | 8 | 8 | All | 0.000002 |
N | 60 | G60A | gGc | gCc | 6 | 8 | All | 0.000001 |
N | 60 | G60A | gGC | gCA | 1 | 8 | All | 0 |
N | 60 | G60A | gGC | gCG | 1 | 8 | All | 0 |
N | 60 | G60G | ggC | ggT | 8 | 8 | AY.120 | 0.000297 |
N | 60 | G60G | ggC | ggT | 8 | 8 | AY.4.2 | 0.000174 |
N | 60 | G60G | ggC | ggT | 8 | 8 | AY.58 | 0.00726 |
N | 60 | G60R | Ggc | Cgc | 8 | 8 | B.1 | 0.000073 |
N | 60 | G60S | Ggc | Agc | 8 | 8 | B.1.177 | 0.000105 |
N | 60 | G60G | ggC | ggT | 8 | 8 | B.1.240 | 0.001725 |
N | 60 | G60G | ggC | ggT | 8 | 8 | B.1.427 | 0.000404 |
N | 60 | G60G | ggC | ggT | 7 | 7 | AY.120.1 | 0.002247 |
N | 60 | G60G | ggC | ggT | 7 | 7 | B.1.1.216 | 0.006233 |
N | 60 | G60G | ggC | ggT | 7 | 7 | B.1.1.33 | 0.002946 |
N | 60 | G60S | Ggc | Agc | 7 | 7 | B.1.177.7 | 0.001154 |
N | 60 | G60G | ggC | ggT | 7 | 7 | B.1.537 | 0.14 |
N | 60 | G60S | Ggc | Agc | 7 | 7 | B.1.617.2 | 0.000026 |
N | 60 | G60del1 | Ggc | -gc | 4 | 6 | All | 0.000001 |
N | 60 | G60del1 | ggC | gg- | 1 | 6 | All | 0 |
N | 60 | G60del1 | GGc | -Ac | 1 | 6 | All | 0 |
N | 60 | G60G | ggC | ggT | 6 | 6 | AY.26 | 0.00017 |
N | 60 | G60C | Ggc | Tgc | 6 | 6 | AY.44 | 0.000037 |
N | 60 | G60G | ggC | ggT | 6 | 6 | AY.47 | 0.000187 |
N | 60 | G60G | ggC | ggT | 6 | 6 | AY.5.4 | 0.00166 |
N | 60 | G60G | ggC | ggT | 6 | 6 | AY.65 | 0.003198 |
N | 60 | G60G | ggC | ggT | 6 | 6 | B | 0.000767 |
N | 60 | G60G | ggC | ggT | 6 | 6 | B.1.1.101 | 0.06 |
N | 60 | G60G | ggC | ggT | 6 | 6 | B.1.36.8 | 0.006 |
N | 60 | G60G | ggC | ggT | 6 | 6 | B.1.396 | 0.004234 |
N | 60 | G60R | Ggc | Cgc | 6 | 6 | B.1.466.2 | 0.002347 |
N | 60 | G60G | ggC | ggT | 6 | 6 | B.1.505 | 0.026316 |
N | 60 | G60G | ggC | ggT | 6 | 6 | Q.3 | 0.00087 |
N | 60 | G60G | ggC | ggT | 5 | 5 | AY.20 | 0.000194 |
N | 60 | G60C | Ggc | Tgc | 5 | 5 | AY.25 | 0.00003 |
N | 60 | G60C | Ggc | Tgc | 5 | 5 | AY.4.2 | 0.000108 |
N | 60 | G60R | Ggc | Cgc | 5 | 5 | AY.46 | 0.00052 |
N | 60 | G60G | ggC | ggT | 5 | 5 | AY.6 | 0.000206 |
N | 60 | G60G | ggC | ggT | 5 | 5 | AY.7.1 | 0.000564 |
N | 60 | G60G | ggC | ggT | 5 | 5 | AY.89 | 0.02451 |
N | 60 | G60G | ggC | ggT | 5 | 5 | B.1.1.1 | 0.001633 |
N | 60 | G60G | ggC | ggT | 5 | 5 | B.1.1.335 | 0.064935 |
N | 60 | G60G | ggC | ggT | 5 | 5 | B.1.177.21 | 0.000382 |
N | 60 | G60R | GgC | AgG | 1 | 5 | B.1.177.73 | 0.000566 |
N | 60 | G60R | GgC | AgA | 1 | 5 | B.1.177.73 | 0.000566 |
N | 60 | G60R | GgC | CgA | 1 | 5 | B.1.177.73 | 0.000566 |
N | 60 | G60R | Ggc | Cgc | 1 | 5 | B.1.177.73 | 0.000566 |
N | 60 | G60R | GgC | CgG | 1 | 5 | B.1.177.73 | 0.000566 |
N | 60 | G60G | ggC | ggT | 5 | 5 | B.1.258.6 | 0.098039 |
N | 60 | G60G | ggC | ggT | 5 | 5 | B.1.381 | 0.039062 |
N | 60 | G60R | Ggc | Cgc | 5 | 5 | B.1.403 | 0.01634 |
N | 60 | G60R | Ggc | Cgc | 5 | 5 | B.1.621 | 0.000443 |
N | 60 | G60G | ggC | ggT | 5 | 5 | C.37 | 0.00058 |
N | 60 | G60G | ggC | ggT | 5 | 5 | P.1.12 | 0.00242 |
N | 60 | G60G | ggC | ggT | 4 | 5 | Q.1 | 0.000505 |
N | 60 | G60G | ggC | ggA | 1 | 5 | Q.1 | 0.000126 |
N | 60 | G60T | GGc | ACc | 2 | 4 | All | 0 |
N | 60 | G60T | GGC | ACA | 1 | 4 | All | 0 |
N | 60 | G60T | GGC | ACG | 1 | 4 | All | 0 |
N | 60 | G60C | Ggc | Tgc | 3 | 4 | AY.102 | 0.00008 |
N | 60 | G60C | GgC | TgT | 1 | 4 | AY.102 | 0.000027 |
N | 60 | G60G | ggC | ggT | 4 | 4 | AY.2 | 0.001425 |
N | 60 | G60C | Ggc | Tgc | 4 | 4 | AY.3 | 0.00004 |
N | 60 | G60R | Ggc | Cgc | 4 | 4 | AY.33 | 0.000267 |
N | 60 | G60S | Ggc | Agc | 4 | 4 | AY.43 | 0.000018 |
N | 60 | G60G | ggC | ggT | 4 | 4 | AY.46 | 0.000416 |
N | 60 | G60G | ggC | ggT | 4 | 4 | AY.46.6 | 0.000289 |
N | 60 | G60G | ggC | ggT | 4 | 4 | AY.56 | 0.006421 |
N | 60 | G60G | ggC | ggT | 4 | 4 | AY.98 | 0.000316 |
N | 60 | G60G | ggC | ggT | 4 | 4 | AY.99.2 | 0.000369 |
N | 60 | G60S | Ggc | Agc | 4 | 4 | B.1 | 0.000037 |
N | 60 | G60R | Ggc | Cgc | 4 | 4 | B.1.1 | 0.000073 |
N | 60 | G60R | Ggc | Cgc | 4 | 4 | B.1.177 | 0.000053 |
N | 60 | G60G | ggC | ggT | 4 | 4 | B.1.177.86 | 0.000734 |
N | 60 | G60R | Ggc | Cgc | 4 | 4 | B.1.243 | 0.000278 |
N | 60 | G60G | ggC | ggT | 4 | 4 | B.1.466.2 | 0.001565 |
N | 60 | G60G | ggC | ggT | 4 | 4 | B.1.575 | 0.001214 |
N | 60 | G60G | ggC | ggT | 4 | 4 | B.1.582 | 0.001963 |
N | 60 | G60V | gGc | gTc | 4 | 4 | B.1.617.2 | 0.000015 |
N | 60 | G60C | Ggc | Tgc | 4 | 4 | C.37 | 0.000464 |
N | 60 | G60L | GGc | CTc | 1 | 3 | All | 0 |
N | 60 | G60P | GGC | CCA | 1 | 3 | All | 0 |
N | 60 | G60P | GGc | CCc | 1 | 3 | All | 0 |
N | 60 | G60P | GGC | CCG | 1 | 3 | All | 0 |
N | 60 | G60L | GGC | CTA | 1 | 3 | All | 0 |
N | 60 | G60L | GGC | CTG | 1 | 3 | All | 0 |
N | 60 | G60C | Ggc | Tgc | 3 | 3 | AY.100 | 0.000138 |
N | 60 | G60G | ggC | ggT | 3 | 3 | AY.113 | 0.000427 |
N | 60 | G60G | ggC | ggT | 3 | 3 | AY.119 | 0.000106 |
N | 60 | G60G | ggC | ggT | 3 | 3 | AY.23 | 0.000209 |
N | 60 | G60S | Ggc | Agc | 3 | 3 | AY.25 | 0.000018 |
N | 60 | G60G | ggC | ggT | 3 | 3 | AY.4.4 | 0.001227 |
N | 60 | G60G | ggC | ggT | 3 | 3 | AY.4.5 | 0.000322 |
N | 60 | G60R | Ggc | Cgc | 3 | 3 | AY.47 | 0.000093 |
N | 60 | G60G | ggC | ggT | 3 | 3 | AY.53 | 0.000863 |
N | 60 | G60G | ggC | ggT | 3 | 3 | AY.74 | 0.000347 |
N | 60 | G60G | ggC | ggT | 3 | 3 | AY.9.1 | 0.000251 |
N | 60 | G60R | Ggc | Cgc | 3 | 3 | B.1.1.266 | 0.036585 |
N | 60 | G60G | ggC | ggT | 3 | 3 | B.1.1.37 | 0.000579 |
N | 60 | G60G | ggC | ggT | 3 | 3 | B.1.1.432 | 0.003797 |
N | 60 | G60G | ggC | ggT | 3 | 3 | B.1.1.63 | 0.001157 |
N | 60 | G60G | ggC | ggT | 3 | 3 | B.1.177.57 | 0.000843 |
N | 60 | G60V | gGc | gTc | 1 | 3 | B.1.177.73 | 0.000566 |
N | 60 | G60A | gGc | gCc | 1 | 3 | B.1.177.73 | 0.000566 |
N | 60 | G60T | GGC | ACG | 1 | 3 | B.1.177.73 | 0.000566 |
N | 60 | G60V | gGC | gTG | 1 | 3 | B.1.177.73 | 0.000566 |
N | 60 | G60P | GGC | CCA | 1 | 3 | B.1.177.73 | 0.000566 |
N | 60 | G60P | GGc | CCc | 1 | 3 | B.1.177.73 | 0.000566 |
N | 60 | G60T | GGC | ACA | 1 | 3 | B.1.177.73 | 0.000566 |
N | 60 | G60P | GGC | CCG | 1 | 3 | B.1.177.73 | 0.000566 |
N | 60 | G60T | GGc | ACc | 1 | 3 | B.1.177.73 | 0.000566 |
N | 60 | G60L | GGc | CTc | 1 | 3 | B.1.177.73 | 0.000566 |
N | 60 | G60L | GGC | CTG | 1 | 3 | B.1.177.73 | 0.000566 |
N | 60 | G60A | gGC | gCA | 1 | 3 | B.1.177.73 | 0.000566 |
N | 60 | G60A | gGC | gCG | 1 | 3 | B.1.177.73 | 0.000566 |
N | 60 | G60V | gGC | gTA | 1 | 3 | B.1.177.73 | 0.000566 |
N | 60 | G60L | GGC | CTA | 1 | 3 | B.1.177.73 | 0.000566 |
N | 60 | G60G | ggC | ggT | 3 | 3 | B.1.456 | 0.009804 |
N | 60 | G60G | ggC | ggT | 3 | 3 | B.1.596 | 0.000261 |
N | 60 | G60S | Ggc | Agc | 3 | 3 | B.1.596 | 0.000261 |
N | 60 | G60G | ggC | ggT | 3 | 3 | B.1.617.1 | 0.000387 |
N | 60 | G60G | ggC | ggT | 3 | 3 | B.1.637 | 0.000219 |
N | 60 | G60G | ggC | ggT | 3 | 3 | D.2 | 0.000225 |
N | 60 | G60G | ggC | ggT | 3 | 3 | N.4 | 0.012766 |
N | 60 | G60G | ggC | ggT | 3 | 3 | P.1.7 | 0.000958 |
N | 60 | G60G | ggC | ggT | 2 | 2 | A.2.5.1 | 0.009615 |
N | 60 | G60G | ggC | ggT | 2 | 2 | AA.5 | 0.032258 |
N | 60 | G60del2 | GGc | --c | 2 | 2 | All | 0 |
N | 60 | G60X | GGC | TAA | 1 | 2 | All | 0 |
N | 60 | G60I | GGC | ATA | 1 | 2 | All | 0 |
N | 60 | G60X | GgC | TgA | 1 | 2 | All | 0 |
N | 60 | G60I | GGc | ATc | 1 | 2 | All | 0 |
N | 60 | G60G | ggC | ggT | 2 | 2 | AY.100 | 0.000092 |
N | 60 | G60R | Ggc | Cgc | 2 | 2 | AY.103 | 0.000012 |
N | 60 | G60C | Ggc | Tgc | 2 | 2 | AY.106 | 0.00067 |
N | 60 | G60G | ggC | ggT | 2 | 2 | AY.110 | 0.000225 |
N | 60 | G60G | ggC | ggT | 2 | 2 | AY.118 | 0.000125 |
N | 60 | G60G | ggC | ggT | 2 | 2 | AY.16 | 0.000759 |
N | 60 | G60R | Ggc | Cgc | 2 | 2 | AY.25 | 0.000012 |
N | 60 | G60G | ggC | ggT | 2 | 2 | AY.27 | 0.000129 |
N | 60 | G60G | ggC | ggT | 2 | 2 | AY.3.1 | 0.000171 |
N | 60 | G60G | ggC | ggT | 2 | 2 | AY.34 | 0.000194 |
N | 60 | G60G | ggC | ggT | 2 | 2 | AY.36 | 0.000296 |
N | 60 | G60S | Ggc | Agc | 2 | 2 | AY.39.1 | 0.000079 |
N | 60 | G60G | ggC | ggT | 2 | 2 | AY.39.1 | 0.000079 |
N | 60 | G60C | Ggc | Tgc | 2 | 2 | AY.39.1 | 0.000079 |
N | 60 | G60V | gGc | gTc | 2 | 2 | AY.4 | 0.000003 |
N | 60 | G60G | ggC | ggT | 2 | 2 | AY.4.2.1 | 0.000298 |
N | 60 | G60C | Ggc | Tgc | 2 | 2 | AY.42 | 0.00008 |
N | 60 | G60G | ggC | ggT | 2 | 2 | AY.42 | 0.00008 |
N | 60 | G60R | Ggc | Cgc | 2 | 2 | AY.44 | 0.000012 |
N | 60 | G60S | Ggc | Agc | 2 | 2 | AY.44 | 0.000012 |
N | 60 | G60G | ggC | ggT | 2 | 2 | AY.45 | 0.000243 |
N | 60 | G60R | Ggc | Cgc | 2 | 2 | AY.46.4 | 0.000329 |
N | 60 | G60C | Ggc | Tgc | 2 | 2 | AY.5 | 0.000041 |
N | 60 | G60R | Ggc | Cgc | 2 | 2 | AY.53 | 0.000575 |
N | 60 | G60G | ggC | ggT | 2 | 2 | AY.62 | 0.000871 |
N | 60 | G60C | Ggc | Tgc | 2 | 2 | AY.7.1 | 0.000225 |
N | 60 | G60G | ggC | ggT | 2 | 2 | AY.72 | 0.002721 |
N | 60 | G60S | Ggc | Agc | 2 | 2 | AY.74 | 0.000231 |
N | 60 | G60G | ggC | ggT | 2 | 2 | AY.84 | 0.000875 |
N | 60 | G60G | ggC | ggA | 1 | 2 | AY.9.2 | 0.000037 |
N | 60 | G60G | ggC | ggT | 1 | 2 | AY.9.2 | 0.000037 |
N | 60 | G60G | ggC | ggT | 2 | 2 | AY.91 | 0.001461 |
N | 60 | G60G | ggC | ggT | 2 | 2 | AY.95 | 0.001522 |
N | 60 | G60C | Ggc | Tgc | 2 | 2 | AY.98.1 | 0.000097 |
N | 60 | G60G | ggC | ggT | 2 | 2 | AY.99 | 0.002099 |
N | 60 | G60S | Ggc | Agc | 2 | 2 | B | 0.000256 |
N | 60 | G60C | Ggc | Tgc | 2 | 2 | B.1 | 0.000018 |
N | 60 | G60G | ggC | ggT | 2 | 2 | B.1.1.111 | 0.029412 |
N | 60 | G60G | ggC | ggT | 2 | 2 | B.1.1.220 | 0.003717 |
N | 60 | G60G | ggC | ggT | 2 | 2 | B.1.1.409 | 0.005666 |
N | 60 | G60C | Ggc | Tgc | 2 | 2 | B.1.1.519 | 0.000079 |
N | 60 | G60G | ggC | ggT | 2 | 2 | B.1.1.521 | 0.010695 |
N | 60 | G60G | ggC | ggT | 2 | 2 | B.1.111 | 0.00235 |
N | 60 | G60G | ggC | ggA | 1 | 2 | B.1.160.26 | 0.002421 |
N | 60 | G60G | ggC | ggT | 1 | 2 | B.1.160.26 | 0.002421 |
N | 60 | G60G | ggC | ggT | 2 | 2 | B.1.177.15 | 0.001262 |
N | 60 | G60G | ggC | ggA | 2 | 2 | B.1.177.2 | 0.009091 |
N | 60 | G60S | Ggc | Agc | 2 | 2 | B.1.177.4 | 0.000422 |
N | 60 | G60R | Ggc | Cgc | 2 | 2 | B.1.177.53 | 0.004785 |
N | 60 | G60R | Ggc | Cgc | 2 | 2 | B.1.177.58 | 0.002663 |
N | 60 | G60G | ggC | ggG | 1 | 2 | B.1.177.73 | 0.000566 |
N | 60 | G60I | GGc | ATc | 1 | 2 | B.1.177.73 | 0.000566 |
N | 60 | G60I | GGC | ATA | 1 | 2 | B.1.177.73 | 0.000566 |
N | 60 | G60G | ggC | ggA | 1 | 2 | B.1.177.73 | 0.000566 |
N | 60 | G60R | Ggc | Cgc | 2 | 2 | B.1.177.81 | 0.000379 |
N | 60 | G60R | Ggc | Cgc | 2 | 2 | B.1.2 | 0.000018 |
N | 60 | G60C | Ggc | Tgc | 2 | 2 | B.1.2 | 0.000018 |
N | 60 | G60V | gGc | gTc | 2 | 2 | B.1.2 | 0.000018 |
N | 60 | G60G | ggC | ggT | 2 | 2 | B.1.311 | 0.000549 |
N | 60 | G60G | ggC | ggT | 2 | 2 | B.1.332 | 0.006993 |
N | 60 | G60R | Ggc | Cgc | 2 | 2 | B.1.351 | 0.000059 |
N | 60 | G60R | Ggc | Cgc | 2 | 2 | B.1.351.3 | 0.001753 |
N | 60 | G60R | Ggc | Cgc | 2 | 2 | B.1.36 | 0.000292 |
N | 60 | G60G | ggC | ggT | 2 | 2 | B.1.369 | 0.00057 |
N | 60 | G60G | ggC | ggT | 2 | 2 | B.1.389 | 0.002004 |
N | 60 | G60G | ggC | ggT | 2 | 2 | B.1.416 | 0.002538 |
N | 60 | G60R | Ggc | Cgc | 2 | 2 | B.1.425 | 0.005988 |
N | 60 | G60C | Ggc | Tgc | 2 | 2 | B.1.427 | 0.000101 |
N | 60 | G60R | Ggc | Cgc | 2 | 2 | B.1.438.1 | 0.000215 |
N | 60 | G60G | ggC | ggT | 2 | 2 | B.1.462 | 0.014493 |
N | 60 | G60del2 | GGc | --c | 2 | 2 | B.1.525 | 0.000226 |
N | 60 | G60C | Ggc | Tgc | 2 | 2 | B.1.526 | 0.000047 |
N | 60 | G60S | Ggc | Agc | 2 | 2 | B.1.561 | 0.000794 |
N | 60 | G60G | ggC | ggT | 2 | 2 | B.1.564.1 | 0.003155 |
N | 60 | G60V | gGc | gTc | 2 | 2 | B.1.623 | 0.001073 |
N | 60 | G60X | GgC | TgA | 1 | 2 | B.1.627 | 0.00202 |
N | 60 | G60X | GGC | TAA | 1 | 2 | B.1.627 | 0.00202 |
N | 60 | G60G | ggC | ggA | 1 | 2 | B.1.627 | 0.00202 |
N | 60 | G60G | ggC | ggT | 1 | 2 | B.1.627 | 0.00202 |
N | 60 | G60G | ggC | ggT | 2 | 2 | B.3 | 0.001661 |
N | 60 | G60R | Ggc | Cgc | 2 | 2 | C.37 | 0.000232 |
N | 60 | G60S | Ggc | Agc | 2 | 2 | P.1 | 0.000032 |
N | 60 | G60G | ggC | ggT | 1 | 1 | A.1 | 0.000282 |
N | 60 | G60V | gGc | gTc | 1 | 1 | A.1 | 0.000282 |
N | 60 | G60S | Ggc | Agc | 1 | 1 | A.23.1 | 0.000704 |
N | 60 | G60G | ggC | ggT | 1 | 1 | A.3 | 0.002096 |
N | 60 | G60G | ggC | ggT | 1 | 1 | A.6 | 0.005128 |
N | 60 | G60G | ggC | ggT | 1 | 1 | AE.8 | 0.000489 |
N | 60 | G60E | gGC | gAA | 1 | 1 | All | 0 |
N | 60 | G60Y | GGc | TAc | 1 | 1 | All | 0 |
N | 60 | G60M | GGC | ATG | 1 | 1 | All | 0 |
N | 60 | G60G | ggC | ggT | 1 | 1 | AT.1 | 0.005128 |
N | 60 | G60G | ggC | ggT | 1 | 1 | AU.1 | 0.001266 |
N | 60 | G60G | ggC | ggT | 1 | 1 | AU.3 | 0.00211 |
N | 60 | G60G | ggC | ggT | 1 | 1 | AY.1 | 0.000396 |
N | 60 | G60R | Ggc | Cgc | 1 | 1 | AY.100 | 0.000046 |
N | 60 | G60S | Ggc | Agc | 1 | 1 | AY.102 | 0.000027 |
N | 60 | G60C | Ggc | Tgc | 1 | 1 | AY.103 | 0.000006 |
N | 60 | G60V | gGc | gTc | 1 | 1 | AY.103 | 0.000006 |
N | 60 | G60G | ggC | ggT | 1 | 1 | AY.105 | 0.000643 |
N | 60 | G60C | Ggc | Tgc | 1 | 1 | AY.108 | 0.001103 |
N | 60 | G60C | Ggc | Tgc | 1 | 1 | AY.110 | 0.000113 |
N | 60 | G60G | ggC | ggT | 1 | 1 | AY.111 | 0.000183 |
N | 60 | G60S | Ggc | Agc | 1 | 1 | AY.113 | 0.000142 |
N | 60 | G60C | Ggc | Tgc | 1 | 1 | AY.113 | 0.000142 |
N | 60 | G60C | Ggc | Tgc | 1 | 1 | AY.117 | 0.000085 |
N | 60 | G60S | Ggc | Agc | 1 | 1 | AY.119 | 0.000035 |
N | 60 | G60C | Ggc | Tgc | 1 | 1 | AY.119 | 0.000035 |
N | 60 | G60V | gGc | gTc | 1 | 1 | AY.120 | 0.000037 |
N | 60 | G60G | ggC | ggT | 1 | 1 | AY.120.2 | 0.001285 |
N | 60 | G60R | Ggc | Cgc | 1 | 1 | AY.120.2.1 | 0.000498 |
N | 60 | G60S | Ggc | Agc | 1 | 1 | AY.121 | 0.000135 |
N | 60 | G60C | Ggc | Tgc | 1 | 1 | AY.2 | 0.000356 |
N | 60 | G60C | Ggc | Tgc | 1 | 1 | AY.20 | 0.000039 |
N | 60 | G60A | gGc | gCc | 1 | 1 | AY.20 | 0.000039 |
N | 60 | G60S | Ggc | Agc | 1 | 1 | AY.23 | 0.00007 |
N | 60 | G60G | ggC | ggT | 1 | 1 | AY.23.1 | 0.000417 |
N | 60 | G60V | gGc | gTc | 1 | 1 | AY.25 | 0.000006 |
N | 60 | G60D | gGc | gAc | 1 | 1 | AY.25 | 0.000006 |
N | 60 | G60S | Ggc | Agc | 1 | 1 | AY.27 | 0.000065 |
N | 60 | G60R | Ggc | Cgc | 1 | 1 | AY.29 | 0.000016 |
N | 60 | G60S | Ggc | Agc | 1 | 1 | AY.29 | 0.000016 |
N | 60 | G60C | Ggc | Tgc | 1 | 1 | AY.3.1 | 0.000085 |
N | 60 | G60G | ggC | ggT | 1 | 1 | AY.32 | 0.000532 |
N | 60 | G60V | gGc | gTc | 1 | 1 | AY.33 | 0.000067 |
N | 60 | G60G | ggC | ggA | 1 | 1 | AY.35 | 0.000233 |
N | 60 | G60C | Ggc | Tgc | 1 | 1 | AY.36 | 0.000148 |
N | 60 | G60R | Ggc | Cgc | 1 | 1 | AY.37 | 0.000316 |
N | 60 | G60G | ggC | ggT | 1 | 1 | AY.38 | 0.000499 |
N | 60 | G60S | Ggc | Agc | 1 | 1 | AY.39 | 0.000025 |
N | 60 | G60R | Ggc | Cgc | 1 | 1 | AY.39 | 0.000025 |
N | 60 | G60A | gGc | gCc | 1 | 1 | AY.4 | 0.000002 |
N | 60 | G60D | gGc | gAc | 1 | 1 | AY.4 | 0.000002 |
N | 60 | G60R | Ggc | Cgc | 1 | 1 | AY.4.2 | 0.000022 |
N | 60 | G60V | gGc | gTc | 1 | 1 | AY.4.2 | 0.000022 |
N | 60 | G60D | gGc | gAc | 1 | 1 | AY.4.2 | 0.000022 |
N | 60 | G60C | Ggc | Tgc | 1 | 1 | AY.4.5 | 0.000107 |
N | 60 | G60G | ggC | ggT | 1 | 1 | AY.41 | 0.000294 |
N | 60 | G60V | gGc | gTc | 1 | 1 | AY.43 | 0.000004 |
N | 60 | G60G | ggC | ggT | 1 | 1 | AY.46.1 | 0.001027 |
N | 60 | G60C | Ggc | Tgc | 1 | 1 | AY.46.4 | 0.000165 |
N | 60 | G60G | ggC | ggT | 1 | 1 | AY.46.4 | 0.000165 |
N | 60 | G60C | Ggc | Tgc | 1 | 1 | AY.48 | 0.000465 |
N | 60 | G60del1 | Ggc | -gc | 1 | 1 | AY.48 | 0.000465 |
N | 60 | G60R | Ggc | Cgc | 1 | 1 | AY.5 | 0.000021 |
N | 60 | G60S | Ggc | Agc | 1 | 1 | AY.5 | 0.000021 |
N | 60 | G60V | gGc | gTc | 1 | 1 | AY.58 | 0.000907 |
N | 60 | G60G | ggC | ggT | 1 | 1 | AY.59 | 0.00053 |
N | 60 | G60S | Ggc | Agc | 1 | 1 | AY.6 | 0.000041 |
N | 60 | G60C | Ggc | Tgc | 1 | 1 | AY.6 | 0.000041 |
N | 60 | G60G | ggC | ggT | 1 | 1 | AY.61 | 0.000105 |
N | 60 | G60R | Ggc | Cgc | 1 | 1 | AY.61 | 0.000105 |
N | 60 | G60G | ggC | ggT | 1 | 1 | AY.64 | 0.000595 |
N | 60 | G60R | Ggc | Cgc | 1 | 1 | AY.67 | 0.000464 |
N | 60 | G60G | ggC | ggT | 1 | 1 | AY.69 | 0.000187 |
N | 60 | G60G | ggC | ggT | 1 | 1 | AY.7 | 0.000196 |
N | 60 | G60V | gGc | gTc | 1 | 1 | AY.7.1 | 0.000113 |
N | 60 | G60G | ggC | ggT | 1 | 1 | AY.70 | 0.000209 |
N | 60 | G60G | ggC | ggT | 1 | 1 | AY.71 | 0.000475 |
N | 60 | G60R | Ggc | Cgc | 1 | 1 | AY.71 | 0.000475 |
N | 60 | G60R | Ggc | Cgc | 1 | 1 | AY.75 | 0.000056 |
N | 60 | G60G | ggC | ggT | 1 | 1 | AY.8 | 0.000606 |
N | 60 | G60G | ggC | ggT | 1 | 1 | AY.81 | 0.001992 |
N | 60 | G60D | gGc | gAc | 1 | 1 | AY.82 | 0.001357 |
N | 60 | G60S | Ggc | Agc | 1 | 1 | AY.9 | 0.000068 |
N | 60 | G60G | ggC | ggT | 1 | 1 | AY.9 | 0.000068 |
N | 60 | G60del | GGC | --- | 1 | 1 | AY.9.2 | 0.000037 |
N | 60 | G60G | ggC | ggT | 1 | 1 | AY.94 | 0.000443 |
N | 60 | G60C | Ggc | Tgc | 1 | 1 | AY.98 | 0.000079 |
N | 60 | G60G | ggC | ggT | 1 | 1 | AZ.2 | 0.000821 |
N | 60 | G60C | Ggc | Tgc | 1 | 1 | B | 0.000128 |
N | 60 | G60D | gGc | gAc | 1 | 1 | B | 0.000128 |
N | 60 | G60T | GGc | ACc | 1 | 1 | B.1 | 0.000009 |
N | 60 | G60A | gGc | gCc | 1 | 1 | B.1 | 0.000009 |
N | 60 | G60V | gGc | gTc | 1 | 1 | B.1 | 0.000009 |
N | 60 | G60del1 | Ggc | -gc | 1 | 1 | B.1 | 0.000009 |
N | 60 | G60del | GGC | --- | 1 | 1 | B.1.1 | 0.000018 |
N | 60 | G60C | Ggc | Tgc | 1 | 1 | B.1.1 | 0.000018 |
N | 60 | G60D | gGc | gAc | 1 | 1 | B.1.1 | 0.000018 |
N | 60 | G60R | Ggc | Cgc | 1 | 1 | B.1.1.1 | 0.000327 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.1.10 | 0.001115 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.1.115 | 0.008929 |
N | 60 | G60del | GGC | --- | 1 | 1 | B.1.1.139 | 0.022727 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.1.174 | 0.003378 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.1.194 | 0.00495 |
N | 60 | G60R | Ggc | Cgc | 1 | 1 | B.1.1.207 | 0.001182 |
N | 60 | G60del | GGC | --- | 1 | 1 | B.1.1.216 | 0.00089 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.1.25 | 0.000569 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.1.263 | 0.001558 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.1.269 | 0.001353 |
N | 60 | G60del1 | ggC | gg- | 1 | 1 | B.1.1.306 | 0.000438 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.1.316 | 0.000925 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.1.317 | 0.000412 |
N | 60 | G60R | Ggc | Cgc | 1 | 1 | B.1.1.333 | 0.001076 |
N | 60 | G60V | gGc | gTc | 1 | 1 | B.1.1.333 | 0.001076 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.1.348 | 0.000796 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.1.362 | 0.005618 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.1.366 | 0.015873 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.1.371 | 0.010417 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.1.404 | 0.015873 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.1.434 | 0.000349 |
N | 60 | G60del1 | Ggc | -gc | 1 | 1 | B.1.1.519 | 0.00004 |
N | 60 | G60R | Ggc | Cgc | 1 | 1 | B.1.1.519 | 0.00004 |
N | 60 | G60del | GGC | --- | 1 | 1 | B.1.1.63 | 0.000386 |
N | 60 | G60D | gGc | gAc | 1 | 1 | B.1.1.7 | 0.000001 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.1.70 | 0.000341 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.139 | 0.000733 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.160.15 | 0.00495 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.160.30 | 0.002976 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.170 | 0.00431 |
N | 60 | G60V | gGc | gTc | 1 | 1 | B.1.177 | 0.000013 |
N | 60 | G60G | ggC | ggA | 1 | 1 | B.1.177.12 | 0.000152 |
N | 60 | G60C | Ggc | Tgc | 1 | 1 | B.1.177.12 | 0.000152 |
N | 60 | G60S | Ggc | Agc | 1 | 1 | B.1.177.15 | 0.000631 |
N | 60 | G60S | Ggc | Agc | 1 | 1 | B.1.177.21 | 0.000076 |
N | 60 | G60C | Ggc | Tgc | 1 | 1 | B.1.177.44 | 0.000519 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.177.58 | 0.001332 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.177.60 | 0.000218 |
N | 60 | G60S | Ggc | Agc | 1 | 1 | B.1.177.63 | 0.002703 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.177.65 | 0.000665 |
N | 60 | G60S | Ggc | Agc | 1 | 1 | B.1.177.73 | 0.000566 |
N | 60 | G60M | GGC | ATG | 1 | 1 | B.1.177.73 | 0.000566 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.177.79 | 0.002342 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.177.80 | 0.001912 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.177.9 | 0.001332 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.189 | 0.004292 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.195 | 0.005025 |
N | 60 | G60del1 | GGc | -Ac | 1 | 1 | B.1.2 | 0.000009 |
N | 60 | G60D | gGc | gAc | 1 | 1 | B.1.2 | 0.000009 |
N | 60 | G60S | Ggc | Agc | 1 | 1 | B.1.2 | 0.000009 |
N | 60 | G60S | Ggc | Agc | 1 | 1 | B.1.221 | 0.000071 |
N | 60 | G60R | Ggc | Cgc | 1 | 1 | B.1.221.1 | 0.002907 |
N | 60 | G60V | gGc | gTc | 1 | 1 | B.1.23 | 0.006061 |
N | 60 | G60C | Ggc | Tgc | 1 | 1 | B.1.234 | 0.000132 |
N | 60 | G60C | Ggc | Tgc | 1 | 1 | B.1.242 | 0.018868 |
N | 60 | G60C | Ggc | Tgc | 1 | 1 | B.1.243 | 0.00007 |
N | 60 | G60S | Ggc | Agc | 1 | 1 | B.1.258 | 0.000067 |
N | 60 | G60G | ggC | ggA | 1 | 1 | B.1.258.11 | 0.000396 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.258.17 | 0.000104 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.264.1 | 0.047619 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.314 | 0.007519 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.356 | 0.001727 |
N | 60 | G60C | Ggc | Tgc | 1 | 1 | B.1.36 | 0.000146 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.36.16 | 0.001425 |
N | 60 | G60R | Ggc | Cgc | 1 | 1 | B.1.36.17 | 0.000494 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.36.17 | 0.000494 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.36.19 | 0.009259 |
N | 60 | G60R | Ggc | Cgc | 1 | 1 | B.1.36.22 | 0.001208 |
N | 60 | G60R | Ggc | Cgc | 1 | 1 | B.1.36.25 | 0.002208 |
N | 60 | G60S | Ggc | Agc | 1 | 1 | B.1.36.26 | 0.002857 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.36.29 | 0.000517 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.366 | 0.004878 |
N | 60 | G60S | Ggc | Agc | 1 | 1 | B.1.369 | 0.000285 |
N | 60 | G60V | gGc | gTc | 1 | 1 | B.1.369 | 0.000285 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.404 | 0.001302 |
N | 60 | G60S | Ggc | Agc | 1 | 1 | B.1.427 | 0.00005 |
N | 60 | G60V | gGc | gTc | 1 | 1 | B.1.429 | 0.000024 |
N | 60 | G60del | GGC | --- | 1 | 1 | B.1.429 | 0.000024 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.436 | 0.001029 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.438.1 | 0.000107 |
N | 60 | G60del | GGC | --- | 1 | 1 | B.1.439 | 0.005917 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.459 | 0.004082 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.470 | 0.001404 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.471 | 0.002732 |
N | 60 | G60S | Ggc | Agc | 1 | 1 | B.1.480 | 0.002488 |
N | 60 | G60R | Ggc | Cgc | 1 | 1 | B.1.480 | 0.002488 |
N | 60 | G60C | Ggc | Tgc | 1 | 1 | B.1.489 | 0.043478 |
N | 60 | G60R | Ggc | Cgc | 1 | 1 | B.1.497 | 0.000315 |
N | 60 | G60C | Ggc | Tgc | 1 | 1 | B.1.498 | 0.020408 |
N | 60 | G60R | Ggc | Cgc | 1 | 1 | B.1.509 | 0.000866 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.517 | 0.000427 |
N | 60 | G60C | Ggc | Tgc | 1 | 1 | B.1.521 | 0.004975 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.525 | 0.000113 |
N | 60 | G60A | gGc | gCc | 1 | 1 | B.1.526 | 0.000024 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.527 | 0.003704 |
N | 60 | G60del1 | Ggc | -gc | 1 | 1 | B.1.533 | 0.009615 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.564 | 0.000426 |
N | 60 | G60R | Ggc | Cgc | 1 | 1 | B.1.576 | 0.000907 |
N | 60 | G60V | gGc | gTc | 1 | 1 | B.1.580 | 0.004065 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.588 | 0.00091 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.595 | 0.000261 |
N | 60 | G60A | gGc | gCc | 1 | 1 | B.1.617.2 | 0.000004 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.625 | 0.002353 |
N | 60 | G60Y | GGc | TAc | 1 | 1 | B.1.627 | 0.00202 |
N | 60 | G60D | gGc | gAc | 1 | 1 | B.1.627 | 0.00202 |
N | 60 | G60E | gGC | gAA | 1 | 1 | B.1.627 | 0.00202 |
N | 60 | G60C | Ggc | Tgc | 1 | 1 | B.1.627 | 0.00202 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.1.93 | 0.000934 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.3.1 | 0.001658 |
N | 60 | G60C | Ggc | Tgc | 1 | 1 | B.34 | 0.013699 |
N | 60 | G60R | Ggc | Cgc | 1 | 1 | B.40 | 0.000364 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.40 | 0.000364 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.55 | 0.00295 |
N | 60 | G60G | ggC | ggT | 1 | 1 | B.6.6 | 0.000889 |
N | 60 | G60G | ggC | ggT | 1 | 1 | C.18 | 0.002591 |
N | 60 | G60G | ggC | ggT | 1 | 1 | C.23 | 0.005814 |
N | 60 | G60V | gGc | gTc | 1 | 1 | C.35 | 0.000774 |
N | 60 | G60R | Ggc | Cgc | 1 | 1 | D.2 | 0.000075 |
N | 60 | G60C | Ggc | Tgc | 1 | 1 | D.2 | 0.000075 |
N | 60 | G60V | gGc | gTc | 1 | 1 | D.2 | 0.000075 |
N | 60 | G60R | Ggc | Cgc | 1 | 1 | P.1 | 0.000016 |
N | 60 | G60del | GGC | --- | 1 | 1 | P.1 | 0.000016 |
N | 60 | G60G | ggC | ggT | 1 | 1 | P.1.1 | 0.000318 |
N | 60 | G60G | ggC | ggT | 1 | 1 | P.1.10 | 0.000269 |
N | 60 | G60S | Ggc | Agc | 1 | 1 | P.1.12 | 0.000484 |
N | 60 | G60S | Ggc | Agc | 1 | 1 | P.1.14 | 0.000048 |
N | 60 | G60R | GgC | CgT | 1 | 1 | P.1.14 | 0.000048 |
N | 60 | G60R | Ggc | Cgc | 1 | 1 | P.1.15 | 0.000232 |
N | 60 | G60G | ggC | ggT | 1 | 1 | P.1.15 | 0.000232 |
N | 60 | G60G | ggC | ggT | 1 | 1 | P.1.16 | 0.000374 |
N | 60 | G60G | ggC | ggT | 1 | 1 | P.1.17 | 0.000162 |
N | 60 | G60G | ggC | ggT | 1 | 1 | P.1.2 | 0.001156 |
N | 60 | G60G | ggC | ggT | 1 | 1 | P.1.6 | 0.001946 |
N | 60 | G60R | Ggc | Cgc | 1 | 1 | P.1.7 | 0.000319 |
N | 60 | G60R | Ggc | Cgc | 1 | 1 | P.2 | 0.000187 |
N | 60 | G60G | ggC | ggT | 1 | 1 | P.7 | 0.004367 |
N | 60 | G60S | Ggc | Agc | 1 | 1 | Q.1 | 0.000126 |
N | 60 | G60G | ggC | ggT | 1 | 1 | Q.2 | 0.000613 |
N | 60 | G60R | Ggc | Cgc | 1 | 1 | Q.3 | 0.000145 |
N | 60 | G60C | Ggc | Tgc | 1 | 1 | Q.3 | 0.000145 |
N | 60 | G60G | ggC | ggT | 1 | 1 | Q.7 | 0.001111 |
N | 60 | G60G | ggC | ggT | 1 | 1 | Q.8 | 0.000165 |
N | 60 | G60S | Ggc | Agc | 1 | 1 | R.1 | 0.00009 |
N | 60 | G60G | ggC | ggT | 1 | 1 | W.3 | 0.005263 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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