CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 6

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	6	P6P		syn	ccC	ccT	13407	12992	0.969046	28289-28291
N	6	P6P		syn	ccC	ccA	13407	410	0.030581	28289-28291
N	6	P6P		syn	ccC	ccG	13407	5	0.00037294	28289-28291
N	6	P6L		nonsyn	cCc	cTc	5735	5735	1	28289-28291
N	6	P6T		nonsyn	Ccc	Acc	1241	1240	0.999194	28289-28291
N	6	P6T		nonsyn	CcC	AcT	1241	1	0.000805802	28289-28291
N	6	P6S		nonsyn	Ccc	Tcc	865	860	0.99422	28289-28291
N	6	P6S		nonsyn	CcC	TcT	865	2	0.00231214	28289-28291
N	6	P6S		nonsyn	CCc	AGc	865	2	0.00231214	28289-28291
N	6	P6S		nonsyn	CcC	TcG	865	1	0.00115607	28289-28291
N	6	P6H		nonsyn	cCc	cAc	310	310	1	28289-28291
N	6	P6del		del	CCC	---	32	32	1	28289-28291
N	6	P6D		nonsyn	CCc	GAc	23	23	1	28289-28291
N	6	P6R		nonsyn	cCc	cGc	9	6	0.666667	28289-28291
N	6	P6R		nonsyn	CCC	AGA	9	3	0.333333	28289-28291
N	6	P6V		nonsyn	CCC	GTA	8	6	0.75	28289-28291
N	6	P6V		nonsyn	CCc	GTc	8	2	0.25	28289-28291
N	6	P6Y		nonsyn	CCc	TAc	5	5	1	28289-28291
N	6	P6A		nonsyn	Ccc	Gcc	5	4	0.8	28289-28291
N	6	P6A		nonsyn	CcC	GcG	5	1	0.2	28289-28291
N	6	P6C		nonsyn	CCc	TGc	4	4	1	28289-28291
N	6	P6del2		del	CCc	--c	4	3	0.75	28289-28291
N	6	P6del2		del	cCC	c--	4	1	0.25	28289-28291
N	6	P6M		nonsyn	CCC	ATG	3	3	1	28289-28291
N	6	P6del1		del	Ccc	-cc	3	3	1	28289-28291
N	6	P6Q		nonsyn	cCC	cAG	2	1	0.5	28289-28291
N	6	P6Q		nonsyn	cCC	cAA	2	1	0.5	28289-28291
N	6	P6F		nonsyn	CCC	TTT	1	1	1	28289-28291

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	6	P6P	ccC	ccT	12992	13407	All	0.002485
N	6	P6P	ccC	ccA	410	13407	All	0.000078
N	6	P6P	ccC	ccG	5	13407	All	0.000001
N	6	P6P	ccC	ccT	6326	6378	AY.4	0.009846
N	6	P6P	ccC	ccA	52	6378	AY.4	0.000081
N	6	P6L	cCc	cTc	5735	5735	All	0.001097
N	6	P6L	cCc	cTc	1812	1812	B.1.438.1	0.194358
N	6	P6P	ccC	ccT	1490	1491	B.1.232	0.800645
N	6	P6P	ccC	ccG	1	1491	B.1.232	0.000537
N	6	P6T	Ccc	Acc	1240	1241	All	0.000237
N	6	P6T	CcC	AcT	1	1241	All	0
N	6	P6P	ccC	ccT	880	889	B.1.1.7	0.000788
N	6	P6P	ccC	ccA	9	889	B.1.1.7	0.000008
N	6	P6S	Ccc	Tcc	860	865	All	0.000164
N	6	P6S	CCc	AGc	2	865	All	0
N	6	P6S	CcC	TcT	2	865	All	0
N	6	P6S	CcC	TcG	1	865	All	0
N	6	P6L	cCc	cTc	753	753	AY.103	0.004675
N	6	P6T	Ccc	Acc	545	545	B.1.617.2	0.002052
N	6	P6P	ccC	ccT	532	532	AY.34	0.051585
N	6	P6P	ccC	ccT	225	446	AY.44	0.00137
N	6	P6P	ccC	ccA	221	446	AY.44	0.001345
N	6	P6L	cCc	cTc	382	382	B.1.617.2	0.001438
N	6	P6L	cCc	cTc	375	375	B.1.1.7	0.000336
N	6	P6S	Ccc	Tcc	357	357	AY.4	0.000556
N	6	P6P	ccC	ccT	314	330	B.1.617.2	0.001182
N	6	P6P	ccC	ccA	16	330	B.1.617.2	0.00006
N	6	P6P	ccC	ccT	313	320	B.1.2	0.002756
N	6	P6P	ccC	ccA	7	320	B.1.2	0.000062
N	6	P6H	cCc	cAc	310	310	All	0.000059
N	6	P6L	cCc	cTc	235	235	AY.4	0.000366
N	6	P6P	ccC	ccT	235	235	B.1.596	0.020478
N	6	P6L	cCc	cTc	210	210	B.1.1.159	0.981308
N	6	P6P	ccC	ccT	204	204	B.1.526	0.004795
N	6	P6L	cCc	cTc	177	177	AY.44	0.001077
N	6	P6P	ccC	ccT	163	173	AY.43	0.000722
N	6	P6P	ccC	ccA	10	173	AY.43	0.000044
N	6	P6P	ccC	ccT	161	161	AY.25	0.000968
N	6	P6L	cCc	cTc	155	155	AY.36	0.022973
N	6	P6L	cCc	cTc	146	146	B.1.2	0.001286
N	6	P6P	ccC	ccT	136	145	P.1	0.002143
N	6	P6P	ccC	ccA	9	145	P.1	0.000142
N	6	P6P	ccC	ccT	129	136	AY.103	0.000801
N	6	P6P	ccC	ccA	7	136	AY.103	0.000043
N	6	P6P	ccC	ccT	136	136	B.1.1.413	0.937931
N	6	P6L	cCc	cTc	131	131	B.1	0.0012
N	6	P6P	ccC	ccT	113	122	B.1	0.001035
N	6	P6P	ccC	ccA	9	122	B.1	0.000082
N	6	P6S	Ccc	Tcc	104	104	B.1.1.7	0.000093
N	6	P6T	Ccc	Acc	85	85	AY.98	0.006715
N	6	P6P	ccC	ccT	81	81	B.1.1	0.001469
N	6	P6L	cCc	cTc	80	80	AY.102	0.002121
N	6	P6T	Ccc	Acc	80	80	B.1.429	0.001882
N	6	P6S	Ccc	Tcc	79	79	B.1.258.17	0.008214
N	6	P6P	ccC	ccT	74	77	AY.39	0.001829
N	6	P6P	ccC	ccA	3	77	AY.39	0.000074
N	6	P6P	ccC	ccT	73	73	P.2	0.013624
N	6	P6L	cCc	cTc	64	64	AY.121	0.00866
N	6	P6H	cCc	cAc	61	61	B.1.1.28	0.018985
N	6	P6L	cCc	cTc	60	60	B.1.1	0.001088
N	6	P6P	ccC	ccT	59	59	AY.29	0.000931
N	6	P6P	ccC	ccT	57	58	AY.5	0.001177
N	6	P6P	ccC	ccA	1	58	AY.5	0.000021
N	6	P6L	cCc	cTc	57	57	P.1	0.000898
N	6	P6L	cCc	cTc	56	56	AY.26	0.001585
N	6	P6L	cCc	cTc	52	52	AY.25	0.000313
N	6	P6P	ccC	ccT	39	48	AY.3	0.000388
N	6	P6P	ccC	ccA	9	48	AY.3	0.00009
N	6	P6T	Ccc	Acc	48	48	AY.43	0.000213
N	6	P6H	cCc	cAc	48	48	B.1.617.2	0.000181
N	6	P6H	cCc	cAc	47	47	AY.103	0.000292
N	6	P6L	cCc	cTc	47	47	B.1.243	0.00327
N	6	P6T	Ccc	Acc	46	46	B.1.1.7	0.000041
N	6	P6P	ccC	ccT	46	46	B.1.234	0.006069
N	6	P6P	ccC	ccT	40	42	B.1.177	0.000527
N	6	P6P	ccC	ccA	2	42	B.1.177	0.000026
N	6	P6S	Ccc	Tcc	42	42	B.1.617.2	0.000158
N	6	P6T	Ccc	Acc	41	41	AY.4	0.000064
N	6	P6L	cCc	cTc	41	41	AY.43	0.000182
N	6	P6P	ccC	ccT	40	41	B.1.351	0.001189
N	6	P6P	ccC	ccA	1	41	B.1.351	0.00003
N	6	P6H	cCc	cAc	39	39	AY.119	0.001377
N	6	P6P	ccC	ccT	38	38	B.1.1.353	0.791667
N	6	P6P	ccC	ccT	38	38	B.1.243	0.002644
N	6	P6T	Ccc	Acc	37	37	AY.68	0.010129
N	6	P6P	ccC	ccT	35	35	B.1.1.37	0.00675
N	6	P6del	CCC	---	32	32	All	0.000006
N	6	P6T	Ccc	Acc	32	32	AY.103	0.000199
N	6	P6L	cCc	cTc	32	32	AY.3	0.000318
N	6	P6P	ccC	ccT	32	32	AY.42	0.001287
N	6	P6L	cCc	cTc	32	32	B.1.351	0.000951
N	6	P6L	cCc	cTc	31	31	AY.23	0.002162
N	6	P6T	Ccc	Acc	31	31	AY.5	0.00064
N	6	P6S	Ccc	Tcc	30	30	AY.25	0.00018
N	6	P6P	ccC	ccT	29	30	B.1.160	0.000904
N	6	P6P	ccC	ccA	1	30	B.1.160	0.000031
N	6	P6P	ccC	ccT	29	29	AY.121	0.003924
N	6	P6P	ccC	ccA	17	29	B.1.429	0.0004
N	6	P6P	ccC	ccT	12	29	B.1.429	0.000282
N	6	P6L	cCc	cTc	29	29	R.1	0.00261
N	6	P6L	cCc	cTc	28	28	AY.33	0.00187
N	6	P6P	ccC	ccT	26	27	AY.102	0.000689
N	6	P6P	ccC	ccA	1	27	AY.102	0.000027
N	6	P6S	Ccc	Tcc	27	27	AY.103	0.000168
N	6	P6P	ccC	ccT	27	27	AY.23	0.001883
N	6	P6P	ccC	ccT	27	27	AY.79	0.032688
N	6	P6L	cCc	cTc	26	26	AY.105	0.01672
N	6	P6P	ccC	ccT	26	26	B.1.1.432	0.032911
N	6	P6P	ccC	ccT	24	24	P.1.14	0.001147
N	6	P6D	CCc	GAc	23	23	All	0.000004
N	6	P6T	Ccc	Acc	23	23	AY.44	0.00014
N	6	P6P	ccC	ccT	23	23	AY.61	0.00241
N	6	P6L	cCc	cTc	23	23	B.1.177	0.000303
N	6	P6T	Ccc	Acc	22	22	B.1.177.81	0.004165
N	6	P6T	Ccc	Acc	21	21	AY.29	0.000331
N	6	P6T	Ccc	Acc	20	20	AY.25	0.00012
N	6	P6L	cCc	cTc	20	20	AY.5	0.000413
N	6	P6P	ccC	ccT	19	19	AY.100	0.000874
N	6	P6P	ccC	ccT	18	19	AY.33	0.001202
N	6	P6P	ccC	ccA	1	19	AY.33	0.000067
N	6	P6P	ccC	ccT	19	19	AY.6	0.000781
N	6	P6L	cCc	cTc	18	18	AY.29	0.000284
N	6	P6L	cCc	cTc	18	18	B.1.1.519	0.000715
N	6	P6S	Ccc	Tcc	18	18	B.1.2	0.000158
N	6	P6H	cCc	cAc	17	17	AY.4	0.000026
N	6	P6L	cCc	cTc	17	17	B.1.1.222	0.003468
N	6	P6P	ccC	ccA	16	17	B.1.1.222	0.003264
N	6	P6P	ccC	ccT	1	17	B.1.1.222	0.000204
N	6	P6P	ccC	ccT	17	17	B.1.1.318	0.00513
N	6	P6P	ccC	ccT	17	17	B.1.146	0.072034
N	6	P6T	Ccc	Acc	16	17	P.1	0.000252
N	6	P6T	CcC	AcT	1	17	P.1	0.000016
N	6	P6P	ccC	ccT	16	16	AY.119	0.000565
N	6	P6S	Ccc	Tcc	16	16	AY.43	0.000071
N	6	P6P	ccC	ccT	16	16	B.1.1.176	0.00703
N	6	P6L	cCc	cTc	16	16	B.1.1.424	0.727273
N	6	P6P	ccC	ccT	16	16	B.1.36.38	0.026273
N	6	P6L	cCc	cTc	16	16	B.1.369	0.004564
N	6	P6L	cCc	cTc	16	16	B.1.517	0.006832
N	6	P6P	ccC	ccT	16	16	C.36.3	0.009075
N	6	P6P	ccC	ccT	16	16	P.1.16	0.005986
N	6	P6P	ccC	ccT	14	15	AY.26	0.000396
N	6	P6P	ccC	ccA	1	15	AY.26	0.000028
N	6	P6P	ccC	ccT	15	15	AY.62	0.006536
N	6	P6L	cCc	cTc	15	15	B.1.111	0.017626
N	6	P6L	cCc	cTc	14	14	AY.20	0.000544
N	6	P6P	ccC	ccT	10	14	AY.4.2	0.000217
N	6	P6P	ccC	ccG	4	14	AY.4.2	0.000087
N	6	P6P	ccC	ccT	14	14	AY.9.1	0.001172
N	6	P6S	Ccc	Tcc	14	14	B.1	0.000128
N	6	P6L	cCc	cTc	14	14	B.1.1.397	0.031532
N	6	P6P	ccC	ccT	14	14	B.1.438.1	0.001502
N	6	P6P	ccC	ccT	13	13	A.2.5	0.006487
N	6	P6S	Ccc	Tcc	13	13	AY.119	0.000459
N	6	P6L	cCc	cTc	13	13	AY.46	0.001353
N	6	P6P	ccC	ccT	13	13	B.1.1.301	0.01533
N	6	P6P	ccC	ccT	13	13	B.1.1.306	0.005699
N	6	P6P	ccC	ccT	12	13	B.1.177.82	0.005728
N	6	P6P	ccC	ccA	1	13	B.1.177.82	0.000477
N	6	P6L	cCc	cTc	13	13	B.1.234	0.001715
N	6	P6L	cCc	cTc	13	13	B.1.36.17	0.006423
N	6	P6L	cCc	cTc	13	13	B.1.577	0.008935
N	6	P6D	CCc	GAc	13	13	P.1	0.000205
N	6	P6P	ccC	ccT	13	13	P.1.15	0.00302
N	6	P6P	ccC	ccT	12	12	AY.113	0.001709
N	6	P6L	cCc	cTc	12	12	AY.9.1	0.001005
N	6	P6P	ccC	ccT	12	12	AY.9.2	0.000441
N	6	P6L	cCc	cTc	12	12	B.1.1.406	0.077922
N	6	P6H	cCc	cAc	12	12	B.1.160	0.000374
N	6	P6P	ccC	ccT	11	12	B.1.258.17	0.001144
N	6	P6P	ccC	ccA	1	12	B.1.258.17	0.000104
N	6	P6P	ccC	ccT	12	12	Q.4	0.005457
N	6	P6L	cCc	cTc	11	11	AY.117	0.00093
N	6	P6P	ccC	ccT	11	11	AY.59	0.005826
N	6	P6T	Ccc	Acc	11	11	AY.74	0.001272
N	6	P6P	ccC	ccT	9	11	AY.75	0.000504
N	6	P6P	ccC	ccA	2	11	AY.75	0.000112
N	6	P6H	cCc	cAc	11	11	B.1	0.000101
N	6	P6P	ccC	ccT	10	11	B.1.1.519	0.000397
N	6	P6P	ccC	ccA	1	11	B.1.1.519	0.00004
N	6	P6P	ccC	ccT	11	11	B.1.336	0.026829
N	6	P6S	Ccc	Tcc	9	11	P.1	0.000142
N	6	P6S	CCc	AGc	2	11	P.1	0.000032
N	6	P6L	cCc	cTc	11	11	P.1.16	0.004115
N	6	P6H	cCc	cAc	10	10	AY.100	0.00046
N	6	P6P	ccC	ccT	10	10	AY.14	0.00088
N	6	P6P	ccC	ccT	9	10	AY.46	0.000937
N	6	P6P	ccC	ccA	1	10	AY.46	0.000104
N	6	P6P	ccC	ccT	9	10	B.1.258	0.000599
N	6	P6P	ccC	ccA	1	10	B.1.258	0.000067
N	6	P6T	Ccc	Acc	10	10	B.1.427	0.000505
N	6	P6L	cCc	cTc	10	10	B.1.596	0.000871
N	6	P6R	cCc	cGc	6	9	All	0.000001
N	6	P6R	CCC	AGA	3	9	All	0.000001
N	6	P6S	Ccc	Tcc	9	9	AY.100	0.000414
N	6	P6L	cCc	cTc	9	9	AY.39.2	0.013867
N	6	P6L	cCc	cTc	9	9	AY.47	0.00028
N	6	P6del	CCC	---	9	9	AY.99.2	0.000829
N	6	P6L	cCc	cTc	9	9	B.1.258	0.000599
N	6	P6P	ccC	ccT	9	9	B.1.621	0.000797
N	6	P6H	cCc	cAc	9	9	P.1	0.000142
N	6	P6S	Ccc	Tcc	8	8	AD.2	0.001752
N	6	P6V	CCC	GTA	6	8	All	0.000001
N	6	P6V	CCc	GTc	2	8	All	0
N	6	P6H	cCc	cAc	8	8	AY.111	0.001465
N	6	P6S	Ccc	Tcc	8	8	AY.26	0.000226
N	6	P6T	Ccc	Acc	8	8	AY.3	0.00008
N	6	P6L	cCc	cTc	8	8	AY.39	0.000198
N	6	P6L	cCc	cTc	8	8	AY.55	0.007339
N	6	P6L	cCc	cTc	8	8	AY.64	0.004762
N	6	P6P	ccC	ccT	8	8	AY.70	0.001668
N	6	P6L	cCc	cTc	8	8	AY.74	0.000925
N	6	P6S	Ccc	Tcc	8	8	B.1.1	0.000145
N	6	P6T	Ccc	Acc	8	8	B.1.1.277	0.00607
N	6	P6P	ccC	ccT	8	8	B.1.1.316	0.007401
N	6	P6S	Ccc	Tcc	8	8	B.1.1.519	0.000318
N	6	P6S	Ccc	Tcc	8	8	B.1.1.63	0.003086
N	6	P6L	cCc	cTc	8	8	B.1.177.32	0.010796
N	6	P6T	Ccc	Acc	8	8	B.1.2	0.00007
N	6	P6T	Ccc	Acc	7	7	AY.102	0.000186
N	6	P6P	ccC	ccT	7	7	AY.120.1	0.002247
N	6	P6P	ccC	ccT	4	7	AY.20	0.000155
N	6	P6P	ccC	ccA	3	7	AY.20	0.000117
N	6	P6S	Ccc	Tcc	7	7	AY.29	0.00011
N	6	P6S	Ccc	Tcc	5	7	AY.39	0.000124
N	6	P6S	CcC	TcT	2	7	AY.39	0.000049
N	6	P6L	cCc	cTc	7	7	AY.4.2	0.000152
N	6	P6P	ccC	ccT	7	7	AY.4.5	0.000752
N	6	P6P	ccC	ccT	7	7	AY.46.4	0.001152
N	6	P6P	ccC	ccT	7	7	AY.88	0.006189
N	6	P6L	cCc	cTc	7	7	B.1.617.1	0.000903
N	6	P6L	cCc	cTc	7	7	P.1.14	0.000335
N	6	P6P	ccC	ccT	6	6	A.21	0.01662
N	6	P6L	cCc	cTc	6	6	AY.100	0.000276
N	6	P6P	ccC	ccT	6	6	AY.120	0.000223
N	6	P6S	Ccc	Tcc	6	6	AY.16	0.002278
N	6	P6T	Ccc	Acc	6	6	AY.33	0.000401
N	6	P6P	ccC	ccT	6	6	AY.39.1	0.000238
N	6	P6P	ccC	ccT	6	6	AY.4.4	0.002455
N	6	P6L	cCc	cTc	6	6	AY.4.5	0.000645
N	6	P6L	cCc	cTc	6	6	AY.46.6	0.000433
N	6	P6P	ccC	ccT	5	6	AY.47	0.000156
N	6	P6P	ccC	ccA	1	6	AY.47	0.000031
N	6	P6L	cCc	cTc	6	6	AY.95	0.004566
N	6	P6L	cCc	cTc	6	6	AY.98	0.000474
N	6	P6L	cCc	cTc	6	6	AY.98.1	0.000291
N	6	P6T	Ccc	Acc	6	6	B.1	0.000055
N	6	P6L	cCc	cTc	6	6	B.1.1.28	0.001867
N	6	P6L	cCc	cTc	6	6	B.1.221	0.000426
N	6	P6L	cCc	cTc	6	6	B.1.240	0.001293
N	6	P6L	cCc	cTc	6	6	B.1.241	0.00487
N	6	P6L	cCc	cTc	6	6	B.1.526	0.000141
N	6	P6T	Ccc	Acc	6	6	B.1.628	0.002114
N	6	P6L	cCc	cTc	6	6	B.6.6	0.005333
N	6	P6P	ccC	ccT	6	6	D.2	0.00045
N	6	P6D	CCc	GAc	6	6	P.1.12	0.002904
N	6	P6S	Ccc	Tcc	6	6	P.2	0.00112
N	6	P6Y	CCc	TAc	5	5	All	0.000001
N	6	P6A	Ccc	Gcc	4	5	All	0.000001
N	6	P6A	CcC	GcG	1	5	All	0
N	6	P6P	ccC	ccT	5	5	AY.110	0.000563
N	6	P6L	cCc	cTc	5	5	AY.118	0.000313
N	6	P6L	cCc	cTc	5	5	AY.15	0.011111
N	6	P6T	Ccc	Acc	5	5	AY.34	0.000485
N	6	P6P	ccC	ccT	5	5	AY.41	0.00147
N	6	P6del	CCC	---	5	5	AY.43	0.000022
N	6	P6L	cCc	cTc	5	5	AY.61	0.000524
N	6	P6T	Ccc	Acc	5	5	AY.9.2	0.000184
N	6	P6H	cCc	cAc	5	5	B.1.1	0.000091
N	6	P6P	ccC	ccT	5	5	B.1.1.286	0.014493
N	6	P6L	cCc	cTc	5	5	B.1.1.317	0.002058
N	6	P6T	Ccc	Acc	5	5	B.1.1.57	0.057471
N	6	P6T	Ccc	Acc	5	5	B.1.1.63	0.001929
N	6	P6Y	CCc	TAc	5	5	B.1.160	0.000156
N	6	P6L	cCc	cTc	5	5	B.1.160	0.000156
N	6	P6P	ccC	ccT	5	5	B.1.36	0.00073
N	6	P6L	cCc	cTc	5	5	B.1.36	0.00073
N	6	P6P	ccC	ccT	5	5	B.1.398	0.014881
N	6	P6P	ccC	ccT	5	5	B.1.404	0.00651
N	6	P6P	ccC	ccT	4	5	B.1.427	0.000202
N	6	P6P	ccC	ccA	1	5	B.1.427	0.00005
N	6	P6L	cCc	cTc	5	5	B.1.429	0.000118
N	6	P6P	ccC	ccT	5	5	B.1.466	0.116279
N	6	P6V	CCC	GTA	5	5	P.1	0.000079
N	6	P6P	ccC	ccT	5	5	Q.8	0.000825
N	6	P6P	ccC	ccT	5	5	R.1	0.00045
N	6	P6L	cCc	cTc	4	4	A.2.5	0.001996
N	6	P6C	CCc	TGc	4	4	All	0.000001
N	6	P6del2	CCc	--c	3	4	All	0.000001
N	6	P6del2	cCC	c--	1	4	All	0
N	6	P6L	cCc	cTc	4	4	AY.116.1	0.001246
N	6	P6P	ccC	ccT	4	4	AY.117	0.000338
N	6	P6H	cCc	cAc	4	4	AY.118	0.000251
N	6	P6L	cCc	cTc	4	4	AY.120	0.000149
N	6	P6P	ccC	ccT	4	4	AY.120.2.1	0.001993
N	6	P6T	Ccc	Acc	4	4	AY.26	0.000113
N	6	P6P	ccC	ccT	3	4	AY.27	0.000194
N	6	P6P	ccC	ccA	1	4	AY.27	0.000065
N	6	P6P	ccC	ccT	4	4	AY.3.1	0.000341
N	6	P6L	cCc	cTc	4	4	AY.42	0.000161
N	6	P6P	ccC	ccT	4	4	AY.45	0.000487
N	6	P6P	ccC	ccT	4	4	AY.5.4	0.001107
N	6	P6L	cCc	cTc	4	4	AY.9.2	0.000147
N	6	P6P	ccC	ccT	4	4	AY.92	0.001149
N	6	P6P	ccC	ccT	4	4	AY.93	0.001092
N	6	P6L	cCc	cTc	4	4	AY.99.2	0.000369
N	6	P6P	ccC	ccT	4	4	B.1.1.214	0.000222
N	6	P6L	cCc	cTc	4	4	B.1.1.33	0.001684
N	6	P6L	cCc	cTc	4	4	B.1.1.37	0.000771
N	6	P6L	cCc	cTc	4	4	B.1.1.50	0.002716
N	6	P6T	Ccc	Acc	4	4	B.1.177	0.000053
N	6	P6R	cCc	cGc	4	4	B.1.177.81	0.000757
N	6	P6P	ccC	ccT	4	4	B.1.400	0.001716
N	6	P6H	cCc	cAc	4	4	B.1.429	0.000094
N	6	P6T	Ccc	Acc	4	4	B.1.526	0.000094
N	6	P6L	cCc	cTc	4	4	B.1.621	0.000354
N	6	P6L	cCc	cTc	4	4	B.1.623	0.002146
N	6	P6P	ccC	ccT	4	4	B.1.637	0.000292
N	6	P6A	Ccc	Gcc	3	4	P.1	0.000047
N	6	P6A	CcC	GcG	1	4	P.1	0.000016
N	6	P6L	cCc	cTc	4	4	P.1.10	0.001078
N	6	P6S	Ccc	Tcc	3	4	P.1.15	0.000697
N	6	P6S	CcC	TcG	1	4	P.1.15	0.000232
N	6	P6L	cCc	cTc	4	4	P.1.17	0.000647
N	6	P6L	cCc	cTc	3	3	A	0.001161
N	6	P6P	ccC	ccT	3	3	A.2	0.001985
N	6	P6del1	Ccc	-cc	3	3	All	0.000001
N	6	P6M	CCC	ATG	3	3	All	0.000001
N	6	P6H	cCc	cAc	3	3	AY.105	0.001929
N	6	P6P	ccC	ccT	2	3	AY.105	0.001286
N	6	P6P	ccC	ccA	1	3	AY.105	0.000643
N	6	P6P	ccC	ccT	3	3	AY.106	0.001005
N	6	P6T	Ccc	Acc	3	3	AY.119	0.000106
N	6	P6L	cCc	cTc	3	3	AY.14	0.000264
N	6	P6P	ccC	ccT	3	3	AY.16.1	0.00141
N	6	P6L	cCc	cTc	3	3	AY.27	0.000194
N	6	P6S	Ccc	Tcc	3	3	AY.3	0.00003
N	6	P6L	cCc	cTc	3	3	AY.3.1	0.000256
N	6	P6L	cCc	cTc	3	3	AY.35	0.000699
N	6	P6T	Ccc	Acc	3	3	AY.42	0.000121
N	6	P6S	Ccc	Tcc	3	3	AY.44	0.000018
N	6	P6S	Ccc	Tcc	3	3	AY.45	0.000365
N	6	P6H	cCc	cAc	3	3	AY.46	0.000312
N	6	P6L	cCc	cTc	3	3	AY.6	0.000123
N	6	P6L	cCc	cTc	3	3	AY.67	0.001393
N	6	P6P	ccC	ccT	3	3	AY.69	0.00056
N	6	P6L	cCc	cTc	3	3	AY.75	0.000168
N	6	P6L	cCc	cTc	3	3	AY.84	0.001312
N	6	P6P	ccC	ccT	3	3	AY.84	0.001312
N	6	P6P	ccC	ccT	3	3	AY.9	0.000203
N	6	P6L	cCc	cTc	3	3	AY.9	0.000203
N	6	P6S	Ccc	Tcc	3	3	AY.9.2	0.00011
N	6	P6L	cCc	cTc	3	3	B	0.000383
N	6	P6S	Ccc	Tcc	3	3	B.1.1.201	0.073171
N	6	P6P	ccC	ccT	3	3	B.1.1.28	0.000934
N	6	P6L	cCc	cTc	3	3	B.1.1.482	0.069767
N	6	P6del	CCC	---	3	3	B.1.1.7	0.000003
N	6	P6S	Ccc	Tcc	3	3	B.1.139	0.002199
N	6	P6T	Ccc	Acc	3	3	B.1.164	0.044776
N	6	P6L	cCc	cTc	3	3	B.1.177.81	0.000568
N	6	P6P	ccC	ccT	3	3	B.1.221	0.000213
N	6	P6T	Ccc	Acc	3	3	B.1.243	0.000209
N	6	P6P	ccC	ccT	3	3	B.1.420	0.03125
N	6	P6S	Ccc	Tcc	3	3	B.1.429	0.000071
N	6	P6L	cCc	cTc	3	3	B.1.438	0.019608
N	6	P6L	cCc	cTc	3	3	B.1.609	0.001438
N	6	P6L	cCc	cTc	3	3	C.2	0.048387
N	6	P6T	Ccc	Acc	3	3	P.1.17	0.000485
N	6	P6L	cCc	cTc	3	3	P.1.7	0.000958
N	6	P6L	cCc	cTc	2	2	A.21	0.00554
N	6	P6Q	cCC	cAA	1	2	All	0
N	6	P6Q	cCC	cAG	1	2	All	0
N	6	P6T	Ccc	Acc	2	2	AY.100	0.000092
N	6	P6L	cCc	cTc	2	2	AY.113	0.000285
N	6	P6P	ccC	ccT	2	2	AY.116	0.000574
N	6	P6H	cCc	cAc	2	2	AY.117	0.000169
N	6	P6T	Ccc	Acc	2	2	AY.118	0.000125
N	6	P6T	Ccc	Acc	2	2	AY.120	0.000074
N	6	P6H	cCc	cAc	2	2	AY.121	0.000271
N	6	P6T	Ccc	Acc	2	2	AY.20	0.000078
N	6	P6L	cCc	cTc	2	2	AY.30	0.000791
N	6	P6S	Ccc	Tcc	2	2	AY.33	0.000134
N	6	P6T	Ccc	Acc	2	2	AY.4.2	0.000043
N	6	P6H	cCc	cAc	2	2	AY.44	0.000012
N	6	P6L	cCc	cTc	2	2	AY.45	0.000243
N	6	P6del	CCC	---	2	2	AY.46	0.000208
N	6	P6L	cCc	cTc	2	2	AY.46.2	0.001271
N	6	P6P	ccC	ccT	2	2	AY.46.2	0.001271
N	6	P6T	Ccc	Acc	2	2	AY.47	0.000062
N	6	P6T	Ccc	Acc	2	2	AY.5.3	0.000675
N	6	P6L	cCc	cTc	2	2	AY.5.4	0.000553
N	6	P6L	cCc	cTc	2	2	AY.52	0.001629
N	6	P6P	ccC	ccT	2	2	AY.54	0.000191
N	6	P6L	cCc	cTc	2	2	AY.54	0.000191
N	6	P6L	cCc	cTc	2	2	AY.59	0.001059
N	6	P6P	ccC	ccT	2	2	AY.63	0.000774
N	6	P6L	cCc	cTc	2	2	AY.66	0.002139
N	6	P6P	ccC	ccT	2	2	AY.75.1	0.000361
N	6	P6L	cCc	cTc	2	2	AY.75.1	0.000361
N	6	P6L	cCc	cTc	2	2	AY.82	0.002714
N	6	P6L	cCc	cTc	2	2	AY.85	0.000854
N	6	P6P	ccC	ccT	2	2	AY.87	0.001665
N	6	P6L	cCc	cTc	2	2	AY.89	0.009804
N	6	P6P	ccC	ccT	2	2	AY.97	0.003401
N	6	P6P	ccC	ccT	2	2	AY.98.1	0.000097
N	6	P6S	Ccc	Tcc	2	2	AY.98.1	0.000097
N	6	P6P	ccC	ccT	2	2	B	0.000256
N	6	P6S	Ccc	Tcc	2	2	B	0.000256
N	6	P6T	Ccc	Acc	2	2	B.1.1.161	0.007067
N	6	P6P	ccC	ccT	2	2	B.1.1.216	0.001781
N	6	P6L	cCc	cTc	2	2	B.1.1.220	0.003717
N	6	P6L	cCc	cTc	2	2	B.1.1.284	0.000215
N	6	P6P	ccC	ccT	2	2	B.1.1.348	0.001592
N	6	P6L	cCc	cTc	2	2	B.1.1.356	0.017094
N	6	P6P	ccC	ccT	2	2	B.1.1.372	0.001377
N	6	P6S	Ccc	Tcc	2	2	B.1.1.397	0.004505
N	6	P6L	cCc	cTc	2	2	B.1.1.416	0.00181
N	6	P6S	Ccc	Tcc	2	2	B.1.1.448	0.004065
N	6	P6P	ccC	ccT	2	2	B.1.1.50	0.001358
N	6	P6S	Ccc	Tcc	2	2	B.1.1.500	0.04
N	6	P6H	cCc	cAc	2	2	B.1.1.7	0.000002
N	6	P6L	cCc	cTc	2	2	B.1.110.3	0.001437
N	6	P6T	Ccc	Acc	2	2	B.1.160	0.000062
N	6	P6P	ccC	ccT	2	2	B.1.170	0.008621
N	6	P6T	Ccc	Acc	2	2	B.1.177.21	0.000153
N	6	P6L	cCc	cTc	2	2	B.1.177.54	0.001213
N	6	P6P	ccC	ccT	2	2	B.1.177.81	0.000379
N	6	P6L	cCc	cTc	2	2	B.1.177.87	0.001456
N	6	P6H	cCc	cAc	2	2	B.1.2	0.000018
N	6	P6P	ccC	ccT	2	2	B.1.214.2	0.001199
N	6	P6P	ccC	ccT	2	2	B.1.240	0.000431
N	6	P6T	Ccc	Acc	2	2	B.1.351	0.000059
N	6	P6S	Ccc	Tcc	2	2	B.1.351.5	0.001199
N	6	P6T	Ccc	Acc	2	2	B.1.36	0.000292
N	6	P6P	ccC	ccT	2	2	B.1.36.29	0.001035
N	6	P6S	Ccc	Tcc	2	2	B.1.377	0.009132
N	6	P6L	cCc	cTc	2	2	B.1.427	0.000101
N	6	P6P	ccC	ccA	2	2	B.1.432	0.022472
N	6	P6P	ccC	ccT	2	2	B.1.466.2	0.000782
N	6	P6T	Ccc	Acc	2	2	B.1.471	0.005464
N	6	P6L	cCc	cTc	2	2	B.1.507	0.022472
N	6	P6P	ccC	ccT	2	2	B.1.518	0.023529
N	6	P6P	ccC	ccT	2	2	B.1.524	0.002813
N	6	P6L	cCc	cTc	2	2	B.1.525	0.000226
N	6	P6L	cCc	cTc	2	2	B.1.557	0.1
N	6	P6P	ccC	ccT	2	2	B.1.564.1	0.003155
N	6	P6L	cCc	cTc	2	2	B.1.597	0.009259
N	6	P6L	cCc	cTc	2	2	B.1.637	0.000146
N	6	P6T	Ccc	Acc	2	2	C.37	0.000232
N	6	P6L	cCc	cTc	2	2	L.2	0.022727
N	6	P6C	CCc	TGc	2	2	P.1	0.000032
N	6	P6M	CCC	ATG	2	2	P.1	0.000032
N	6	P6R	CCC	AGA	2	2	P.1	0.000032
N	6	P6S	Ccc	Tcc	2	2	P.1.13	0.001797
N	6	P6L	cCc	cTc	2	2	P.1.13	0.001797
N	6	P6T	Ccc	Acc	2	2	P.1.14	0.000096
N	6	P6D	CCc	GAc	2	2	P.1.15	0.000465
N	6	P6L	cCc	cTc	2	2	P.2	0.000373
N	6	P6P	ccC	ccT	2	2	Q.3	0.00029
N	6	P6T	Ccc	Acc	2	2	Q.8	0.00033
N	6	P6S	Ccc	Tcc	1	1	A.2.2	0.001689
N	6	P6L	cCc	cTc	1	1	A.2.5.2	0.001572
N	6	P6P	ccC	ccT	1	1	A.23.1	0.000704
N	6	P6T	Ccc	Acc	1	1	A.23.1	0.000704
N	6	P6S	Ccc	Tcc	1	1	A.3	0.002096
N	6	P6S	Ccc	Tcc	1	1	AA.1	0.007246
N	6	P6L	cCc	cTc	1	1	AE.8	0.000489
N	6	P6F	CCC	TTT	1	1	All	0
N	6	P6del	CCC	---	1	1	AY.100	0.000046
N	6	P6del	CCC	---	1	1	AY.101	0.00049
N	6	P6L	cCc	cTc	1	1	AY.101	0.00049
N	6	P6V	CCc	GTc	1	1	AY.103	0.000006
N	6	P6P	ccC	ccT	1	1	AY.104	0.001984
N	6	P6P	ccC	ccT	1	1	AY.109	0.00074
N	6	P6L	cCc	cTc	1	1	AY.110	0.000113
N	6	P6P	ccC	ccT	1	1	AY.111	0.000183
N	6	P6L	cCc	cTc	1	1	AY.111	0.000183
N	6	P6P	ccC	ccT	1	1	AY.114	0.000231
N	6	P6L	cCc	cTc	1	1	AY.114	0.000231
N	6	P6T	Ccc	Acc	1	1	AY.114	0.000231
N	6	P6T	Ccc	Acc	1	1	AY.117	0.000085
N	6	P6L	cCc	cTc	1	1	AY.119	0.000035
N	6	P6L	cCc	cTc	1	1	AY.12	0.000316
N	6	P6del2	cCC	c--	1	1	AY.120.1	0.000321
N	6	P6L	cCc	cTc	1	1	AY.120.1	0.000321
N	6	P6L	cCc	cTc	1	1	AY.120.2	0.001285
N	6	P6P	ccC	ccT	1	1	AY.13	0.000161
N	6	P6T	Ccc	Acc	1	1	AY.14	0.000088
N	6	P6H	cCc	cAc	1	1	AY.14	0.000088
N	6	P6L	cCc	cTc	1	1	AY.16.1	0.00047
N	6	P6P	ccC	ccT	1	1	AY.19	0.00114
N	6	P6T	Ccc	Acc	1	1	AY.23	0.00007
N	6	P6del	CCC	---	1	1	AY.23	0.00007
N	6	P6L	cCc	cTc	1	1	AY.23.1	0.000417
N	6	P6L	cCc	cTc	1	1	AY.24	0.000431
N	6	P6H	cCc	cAc	1	1	AY.25	0.000006
N	6	P6del1	Ccc	-cc	1	1	AY.25	0.000006
N	6	P6H	cCc	cAc	1	1	AY.29	0.000016
N	6	P6P	ccC	ccT	1	1	AY.29.1	0.000221
N	6	P6P	ccC	ccT	1	1	AY.30	0.000396
N	6	P6P	ccC	ccT	1	1	AY.32	0.000532
N	6	P6del	CCC	---	1	1	AY.33	0.000067
N	6	P6L	cCc	cTc	1	1	AY.34	0.000097
N	6	P6P	ccC	ccT	1	1	AY.34.1	0.00051
N	6	P6S	Ccc	Tcc	1	1	AY.35	0.000233
N	6	P6S	Ccc	Tcc	1	1	AY.37	0.000316
N	6	P6L	cCc	cTc	1	1	AY.38	0.000499
N	6	P6T	Ccc	Acc	1	1	AY.38	0.000499
N	6	P6S	Ccc	Tcc	1	1	AY.38	0.000499
N	6	P6T	Ccc	Acc	1	1	AY.39	0.000025
N	6	P6S	Ccc	Tcc	1	1	AY.39.1	0.00004
N	6	P6P	ccC	ccA	1	1	AY.39.1.1	0.000725
N	6	P6P	ccC	ccT	1	1	AY.39.2	0.001541
N	6	P6S	Ccc	Tcc	1	1	AY.4.2	0.000022
N	6	P6S	Ccc	Tcc	1	1	AY.4.2.1	0.000149
N	6	P6L	cCc	cTc	1	1	AY.4.2.1	0.000149
N	6	P6P	ccC	ccT	1	1	AY.4.3	0.000842
N	6	P6del	CCC	---	1	1	AY.4.4	0.000409
N	6	P6H	cCc	cAc	1	1	AY.42	0.00004
N	6	P6H	cCc	cAc	1	1	AY.43	0.000004
N	6	P6del	CCC	---	1	1	AY.44	0.000006
N	6	P6S	Ccc	Tcc	1	1	AY.46	0.000104
N	6	P6L	cCc	cTc	1	1	AY.46.1	0.001027
N	6	P6P	ccC	ccT	1	1	AY.46.1	0.001027
N	6	P6del	CCC	---	1	1	AY.46.3	0.000934
N	6	P6L	cCc	cTc	1	1	AY.46.4	0.000165
N	6	P6T	Ccc	Acc	1	1	AY.46.4	0.000165
N	6	P6del	CCC	---	1	1	AY.46.6	0.000072
N	6	P6H	cCc	cAc	1	1	AY.46.6	0.000072
N	6	P6S	Ccc	Tcc	1	1	AY.47	0.000031
N	6	P6H	cCc	cAc	1	1	AY.47	0.000031
N	6	P6L	cCc	cTc	1	1	AY.48	0.000465
N	6	P6L	cCc	cTc	1	1	AY.49	0.003195
N	6	P6S	Ccc	Tcc	1	1	AY.5	0.000021
N	6	P6H	cCc	cAc	1	1	AY.5	0.000021
N	6	P6del	CCC	---	1	1	AY.5.3	0.000337
N	6	P6L	cCc	cTc	1	1	AY.5.3	0.000337
N	6	P6S	Ccc	Tcc	1	1	AY.5.3	0.000337
N	6	P6L	cCc	cTc	1	1	AY.53	0.000288
N	6	P6P	ccC	ccT	1	1	AY.53	0.000288
N	6	P6P	ccC	ccT	1	1	AY.55	0.000917
N	6	P6S	Ccc	Tcc	1	1	AY.61	0.000105
N	6	P6T	Ccc	Acc	1	1	AY.61	0.000105
N	6	P6T	Ccc	Acc	1	1	AY.62	0.000436
N	6	P6P	ccC	ccT	1	1	AY.68	0.000274
N	6	P6L	cCc	cTc	1	1	AY.7.1	0.000113
N	6	P6P	ccC	ccT	1	1	AY.71	0.000475
N	6	P6P	ccC	ccT	1	1	AY.72	0.001361
N	6	P6T	Ccc	Acc	1	1	AY.73	0.000665
N	6	P6P	ccC	ccT	1	1	AY.74	0.000116
N	6	P6S	Ccc	Tcc	1	1	AY.75	0.000056
N	6	P6T	Ccc	Acc	1	1	AY.75	0.000056
N	6	P6P	ccC	ccT	1	1	AY.8	0.000606
N	6	P6L	cCc	cTc	1	1	AY.86	0.00083
N	6	P6L	cCc	cTc	1	1	AY.87	0.000833
N	6	P6T	Ccc	Acc	1	1	AY.88	0.000884
N	6	P6S	Ccc	Tcc	1	1	AY.89	0.004902
N	6	P6S	Ccc	Tcc	1	1	AY.90	0.000684
N	6	P6T	Ccc	Acc	1	1	AY.92	0.000287
N	6	P6H	cCc	cAc	1	1	AY.94	0.000443
N	6	P6P	ccC	ccT	1	1	AY.98	0.000079
N	6	P6S	Ccc	Tcc	1	1	AY.98	0.000079
N	6	P6H	cCc	cAc	1	1	AY.98.1	0.000048
N	6	P6T	Ccc	Acc	1	1	AY.98.1	0.000048
N	6	P6S	Ccc	Tcc	1	1	AY.99	0.001049
N	6	P6L	cCc	cTc	1	1	AY.99.1	0.001553
N	6	P6H	cCc	cAc	1	1	AY.99.2	0.000092
N	6	P6S	Ccc	Tcc	1	1	AY.99.2	0.000092
N	6	P6P	ccC	ccT	1	1	AY.99.2	0.000092
N	6	P6P	ccC	ccT	1	1	AZ.1	0.000867
N	6	P6P	ccC	ccT	1	1	AZ.2	0.000821
N	6	P6V	CCc	GTc	1	1	B.1	0.000009
N	6	P6A	Ccc	Gcc	1	1	B.1	0.000009
N	6	P6del1	Ccc	-cc	1	1	B.1	0.000009
N	6	P6del	CCC	---	1	1	B.1.1	0.000018
N	6	P6L	cCc	cTc	1	1	B.1.1.1	0.000327
N	6	P6T	Ccc	Acc	1	1	B.1.1.1	0.000327
N	6	P6L	cCc	cTc	1	1	B.1.1.141	0.002012
N	6	P6S	Ccc	Tcc	1	1	B.1.1.157	0.000913
N	6	P6P	ccC	ccT	1	1	B.1.1.16	0.055556
N	6	P6P	ccC	ccT	1	1	B.1.1.174	0.003378
N	6	P6L	cCc	cTc	1	1	B.1.1.176	0.000439
N	6	P6L	cCc	cTc	1	1	B.1.1.189	0.001513
N	6	P6S	Ccc	Tcc	1	1	B.1.1.214	0.000055
N	6	P6T	Ccc	Acc	1	1	B.1.1.214	0.000055
N	6	P6L	cCc	cTc	1	1	B.1.1.216	0.00089
N	6	P6T	Ccc	Acc	1	1	B.1.1.220	0.001859
N	6	P6H	cCc	cAc	1	1	B.1.1.222	0.000204
N	6	P6T	Ccc	Acc	1	1	B.1.1.222	0.000204
N	6	P6P	ccC	ccT	1	1	B.1.1.244	0.015385
N	6	P6L	cCc	cTc	1	1	B.1.1.25	0.000569
N	6	P6H	cCc	cAc	1	1	B.1.1.261	0.008621
N	6	P6S	Ccc	Tcc	1	1	B.1.1.277	0.000759
N	6	P6T	Ccc	Acc	1	1	B.1.1.284	0.000107
N	6	P6L	cCc	cTc	1	1	B.1.1.302	0.002075
N	6	P6L	cCc	cTc	1	1	B.1.1.306	0.000438
N	6	P6S	Ccc	Tcc	1	1	B.1.1.316	0.000925
N	6	P6S	Ccc	Tcc	1	1	B.1.1.326	0.001761
N	6	P6P	ccC	ccT	1	1	B.1.1.326	0.001761
N	6	P6P	ccC	ccT	1	1	B.1.1.33	0.000421
N	6	P6T	Ccc	Acc	1	1	B.1.1.369	0.000446
N	6	P6L	cCc	cTc	1	1	B.1.1.389	0.006061
N	6	P6P	ccC	ccT	1	1	B.1.1.39	0.00051
N	6	P6P	ccC	ccT	1	1	B.1.1.409	0.002833
N	6	P6P	ccC	ccT	1	1	B.1.1.417	0.002703
N	6	P6P	ccC	ccT	1	1	B.1.1.434	0.000349
N	6	P6L	cCc	cTc	1	1	B.1.1.437	0.010417
N	6	P6P	ccC	ccT	1	1	B.1.1.466	0.008696
N	6	P6L	cCc	cTc	1	1	B.1.1.525	0.005464
N	6	P6T	Ccc	Acc	1	1	B.1.1.70	0.000341
N	6	P6T	Ccc	Acc	1	1	B.1.1.8	0.003584
N	6	P6P	ccC	ccT	1	1	B.1.1.99	0.02381
N	6	P6P	ccC	ccT	1	1	B.1.110.3	0.000718
N	6	P6H	cCc	cAc	1	1	B.1.126	0.001276
N	6	P6P	ccC	ccT	1	1	B.1.157	0.002985
N	6	P6S	Ccc	Tcc	1	1	B.1.160.14	0.002119
N	6	P6S	Ccc	Tcc	1	1	B.1.177	0.000013
N	6	P6L	cCc	cTc	1	1	B.1.177.10	0.000878
N	6	P6L	cCc	cTc	1	1	B.1.177.12	0.000152
N	6	P6L	cCc	cTc	1	1	B.1.177.23	0.003236
N	6	P6L	cCc	cTc	1	1	B.1.177.41	0.0025
N	6	P6L	cCc	cTc	1	1	B.1.177.46	0.000918
N	6	P6T	Ccc	Acc	1	1	B.1.177.5	0.001242
N	6	P6P	ccC	ccT	1	1	B.1.177.54	0.000606
N	6	P6P	ccC	ccT	1	1	B.1.177.55	0.002331
N	6	P6P	ccC	ccT	1	1	B.1.177.60	0.000218
N	6	P6T	Ccc	Acc	1	1	B.1.177.60	0.000218
N	6	P6P	ccC	ccT	1	1	B.1.177.63	0.002703
N	6	P6P	ccC	ccT	1	1	B.1.177.7	0.000165
N	6	P6L	cCc	cTc	1	1	B.1.177.74	0.015152
N	6	P6P	ccC	ccT	1	1	B.1.177.77	0.000726
N	6	P6L	cCc	cTc	1	1	B.1.177.80	0.001912
N	6	P6T	Ccc	Acc	1	1	B.1.177.86	0.000183
N	6	P6L	cCc	cTc	1	1	B.1.177.9	0.001332
N	6	P6P	ccC	ccT	1	1	B.1.214	0.003663
N	6	P6del1	Ccc	-cc	1	1	B.1.214.2	0.0006
N	6	P6del2	CCc	--c	1	1	B.1.214.2	0.0006
N	6	P6T	Ccc	Acc	1	1	B.1.221	0.000071
N	6	P6L	cCc	cTc	1	1	B.1.223	0.002778
N	6	P6S	Ccc	Tcc	1	1	B.1.23	0.006061
N	6	P6L	cCc	cTc	1	1	B.1.236	0.002053
N	6	P6P	ccC	ccT	1	1	B.1.237	0.004975
N	6	P6L	cCc	cTc	1	1	B.1.239	0.001221
N	6	P6T	Ccc	Acc	1	1	B.1.239	0.001221
N	6	P6H	cCc	cAc	1	1	B.1.240	0.000216
N	6	P6P	ccC	ccT	1	1	B.1.241	0.000812
N	6	P6T	Ccc	Acc	1	1	B.1.258.11	0.000396
N	6	P6L	cCc	cTc	1	1	B.1.258.17	0.000104
N	6	P6P	ccC	ccT	1	1	B.1.260	0.003344
N	6	P6T	Ccc	Acc	1	1	B.1.260	0.003344
N	6	P6P	ccC	ccT	1	1	B.1.265	0.001271
N	6	P6T	Ccc	Acc	1	1	B.1.265	0.001271
N	6	P6S	Ccc	Tcc	1	1	B.1.277	0.02381
N	6	P6P	ccC	ccT	1	1	B.1.284	0.013158
N	6	P6P	ccC	ccT	1	1	B.1.311	0.000275
N	6	P6T	Ccc	Acc	1	1	B.1.311	0.000275
N	6	P6L	cCc	cTc	1	1	B.1.319	0.003049
N	6	P6P	ccC	ccT	1	1	B.1.349	0.000715
N	6	P6H	cCc	cAc	1	1	B.1.351	0.00003
N	6	P6S	Ccc	Tcc	1	1	B.1.351	0.00003
N	6	P6L	cCc	cTc	1	1	B.1.351.2	0.000303
N	6	P6P	ccC	ccT	1	1	B.1.36.10	0.004785
N	6	P6P	ccC	ccT	1	1	B.1.36.18	0.00042
N	6	P6P	ccC	ccT	1	1	B.1.36.22	0.001208
N	6	P6S	Ccc	Tcc	1	1	B.1.36.27	0.000763
N	6	P6T	Ccc	Acc	1	1	B.1.36.29	0.000517
N	6	P6P	ccC	ccT	1	1	B.1.36.7	0.004
N	6	P6P	ccC	ccT	1	1	B.1.36.8	0.001
N	6	P6P	ccC	ccT	1	1	B.1.361	0.001289
N	6	P6P	ccC	ccT	1	1	B.1.362	0.001541
N	6	P6P	ccC	ccT	1	1	B.1.369	0.000285
N	6	P6T	Ccc	Acc	1	1	B.1.396	0.000706
N	6	P6L	cCc	cTc	1	1	B.1.408	0.00369
N	6	P6P	ccC	ccT	1	1	B.1.417	0.028571
N	6	P6P	ccC	ccT	1	1	B.1.422	0.000812
N	6	P6P	ccC	ccT	1	1	B.1.428	0.00102
N	6	P6R	cCc	cGc	1	1	B.1.429	0.000024
N	6	P6P	ccC	ccT	1	1	B.1.438	0.006536
N	6	P6P	ccC	ccT	1	1	B.1.443	0.004673
N	6	P6T	Ccc	Acc	1	1	B.1.456	0.003268
N	6	P6L	cCc	cTc	1	1	B.1.459	0.004082
N	6	P6P	ccC	ccT	1	1	B.1.460	0.017857
N	6	P6L	cCc	cTc	1	1	B.1.465	0.003802
N	6	P6H	cCc	cAc	1	1	B.1.466.2	0.000391
N	6	P6L	cCc	cTc	1	1	B.1.466.2	0.000391
N	6	P6T	Ccc	Acc	1	1	B.1.525	0.000113
N	6	P6P	ccC	ccT	1	1	B.1.538	0.008065
N	6	P6L	cCc	cTc	1	1	B.1.538	0.008065
N	6	P6L	cCc	cTc	1	1	B.1.561	0.000397
N	6	P6P	ccC	ccT	1	1	B.1.564	0.000426
N	6	P6L	cCc	cTc	1	1	B.1.565	0.00081
N	6	P6T	Ccc	Acc	1	1	B.1.575	0.000303
N	6	P6L	cCc	cTc	1	1	B.1.580	0.004065
N	6	P6S	Ccc	Tcc	1	1	B.1.595	0.000261
N	6	P6P	ccC	ccT	1	1	B.1.595	0.000261
N	6	P6P	ccC	ccT	1	1	B.1.605	0.005952
N	6	P6P	ccC	ccT	1	1	B.1.607	0.052632
N	6	P6S	Ccc	Tcc	1	1	B.1.609	0.000479
N	6	P6P	ccC	ccT	1	1	B.1.617.1	0.000129
N	6	P6T	Ccc	Acc	1	1	B.1.617.1	0.000129
N	6	P6R	cCc	cGc	1	1	B.1.617.2	0.000004
N	6	P6del	CCC	---	1	1	B.1.617.2	0.000004
N	6	P6del2	CCc	--c	1	1	B.1.617.2	0.000004
N	6	P6L	cCc	cTc	1	1	B.1.619	0.000871
N	6	P6T	Ccc	Acc	1	1	B.1.619.1	0.000641
N	6	P6P	ccC	ccT	1	1	B.1.620	0.000946
N	6	P6P	ccC	ccT	1	1	B.1.621.1	0.000506
N	6	P6L	cCc	cTc	1	1	B.1.621.1	0.000506
N	6	P6H	cCc	cAc	1	1	B.1.623	0.000536
N	6	P6P	ccC	ccT	1	1	B.1.623	0.000536
N	6	P6P	ccC	ccT	1	1	B.1.626	0.005714
N	6	P6P	ccC	ccT	1	1	B.1.93	0.000934
N	6	P6T	Ccc	Acc	1	1	B.6	0.00091
N	6	P6L	cCc	cTc	1	1	B.61	0.005747
N	6	P6P	ccC	ccT	1	1	C.11	0.010638
N	6	P6L	cCc	cTc	1	1	C.37	0.000116
N	6	P6L	cCc	cTc	1	1	D.2	0.000075
N	6	P6L	cCc	cTc	1	1	N.3	0.005814
N	6	P6P	ccC	ccT	1	1	N.4	0.004255
N	6	P6S	Ccc	Tcc	1	1	N.5	0.001767
N	6	P6L	cCc	cTc	1	1	N.6	0.007092
N	6	P6L	cCc	cTc	1	1	N.9	0.005952
N	6	P6del2	CCc	--c	1	1	P.1	0.000016
N	6	P6F	CCC	TTT	1	1	P.1	0.000016
N	6	P6Q	cCC	cAG	1	1	P.1	0.000016
N	6	P6P	ccC	ccT	1	1	P.1.12	0.000484
N	6	P6M	CCC	ATG	1	1	P.1.12	0.000484
N	6	P6V	CCC	GTA	1	1	P.1.12	0.000484
N	6	P6del	CCC	---	1	1	P.1.12	0.000484
N	6	P6L	cCc	cTc	1	1	P.1.12	0.000484
N	6	P6D	CCc	GAc	1	1	P.1.13	0.000898
N	6	P6T	Ccc	Acc	1	1	P.1.13	0.000898
N	6	P6Q	cCC	cAA	1	1	P.1.14	0.000048
N	6	P6C	CCc	TGc	1	1	P.1.15	0.000232
N	6	P6L	cCc	cTc	1	1	P.1.15	0.000232
N	6	P6T	Ccc	Acc	1	1	P.1.16	0.000374
N	6	P6P	ccC	ccT	1	1	P.1.17	0.000162
N	6	P6D	CCc	GAc	1	1	P.1.17	0.000162
N	6	P6R	CCC	AGA	1	1	P.1.17	0.000162
N	6	P6C	CCc	TGc	1	1	P.1.17	0.000162
N	6	P6T	Ccc	Acc	1	1	P.1.7	0.000319
N	6	P6P	ccC	ccT	1	1	P.1.7	0.000319
N	6	P6del	CCC	---	1	1	P.1.7	0.000319
N	6	P6T	Ccc	Acc	1	1	P.2	0.000187
N	6	P6L	cCc	cTc	1	1	Q.1	0.000126
N	6	P6P	ccC	ccT	1	1	Q.1	0.000126
N	6	P6S	Ccc	Tcc	1	1	Q.8	0.000165
N	6	P6H	cCc	cAc	1	1	W.4	0.001351
N	6	P6L	cCc	cTc	1	1	Z.1	0.00289
N	6	P6S	Ccc	Tcc	1	1	Z.1	0.00289

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