CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 56

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N56L56LsynctCctT260725860.99194528439-28441
N56L56LsynctCctA2607190.0072880728439-28441
N56L56LsynctCctG260720.00076716528439-28441
N56L56FnonsynCtcTtc5135120.99805128439-28441
N56L56FnonsynCtCTtT51310.0019493228439-28441
N56L56InonsynCtcAtc49390.79591828439-28441
N56L56InonsynCtCAtA49100.20408228439-28441
N56L56deldelCTC---88128439-28441
N56L56PnonsyncTccCc750.71428628439-28441
N56L56PnonsyncTCcCT720.28571428439-28441
N56L56VnonsynCtcGtc44128439-28441
N56L56SnonsynCTCTCT320.66666728439-28441
N56L56SnonsynCTcTCc310.33333328439-28441
N56L56TnonsynCTcACc11128439-28441
N56L56RnonsyncTccGc11128439-28441
N56L56HnonsyncTccAc11128439-28441
N56L56AnonsynCTcGCc11128439-28441

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N56L56LctCctT25862607All0.000495
N56L56LctCctA192607All0.000004
N56L56LctCctG22607All0
N56L56LctCctT15581558B.1.619.10.999359
N56L56LctCctT704704B.1.6190.61324
N56L56FCtcTtc512513All0.000098
N56L56FCtCTtT1513All0
N56L56FCtcTtc138138AY.40.000215
N56L56LctCctT8891B.1.1.70.000079
N56L56LctCctA391B.1.1.70.000003
N56L56ICtcAtc3949All0.000007
N56L56ICtCAtA1049All0.000002
N56L56FCtcTtc4444AY.440.000268
N56L56FCtcTtc3939AY.10.015433
N56L56FCtcTtc3737AY.39.10.001466
N56L56FCtcTtc3535B.1.1.70.000031
N56L56LctCctT3030AY.40.000047
N56L56FCtcTtc3030AY.90.002028
N56L56LctCctT2425AY.440.000146
N56L56LctCctA125AY.440.000006
N56L56LctCctT2525B.1.617.20.000094
N56L56LctCctT2121AY.1030.00013
N56L56FCtcTtc1818AY.250.000108
N56L56FCtcTtc1818B.1.617.20.000068
N56L56FCtcTtc1414AY.1180.000877
N56L56LctCctT1014AY.430.000044
N56L56LctCctA314AY.430.000013
N56L56LctCctG114AY.430.000004
N56L56LctCctT1313B.1.10.000236
N56L56FCtcTtc1111AY.1030.000068
N56L56LctCctT1010AY.200.000389
N56L56LctCctT1010AY.410.002939
N56L56FCtcTtc99AY.1200.000335
N56L56ICtcAtc69B.10.000055
N56L56ICtCAtA39B.10.000027
N56L56delCTC---88All0.000002
N56L56LctCctT88AY.30.00008
N56L56FCtcTtc88AY.390.000198
N56L56LctCctT48B.10.000037
N56L56LctCctA48B.10.000037
N56L56FCtcTtc88B.1.6210.000708
N56L56PcTccCc57All0.000001
N56L56PcTCcCT27All0
N56L56LctCctT77AY.250.000042
N56L56FCtcTtc77AY.30.00007
N56L56FCtcTtc55AY.1020.000133
N56L56LctCctT55AY.3.10.000426
N56L56FCtcTtc55AY.430.000022
N56L56ICtcAtc35AY.430.000013
N56L56ICtCAtA25AY.430.000009
N56L56FCtcTtc55AY.470.000156
N56L56FCtcTtc55B.1.177.40.001055
N56L56LctCctT55B.1.20.000044
N56L56VCtcGtc44All0.000001
N56L56ICtcAtc44AY.440.000024
N56L56FCtcTtc44AY.680.001095
N56L56LctCctA24B0.000256
N56L56LctCctT24B0.000256
N56L56LctCctT44B.1.2980.008457
N56L56FCtcTtc44B.1.3510.000119
N56L56FCtcTtc44B.1.438.10.000429
N56L56FCtcTtc44P.10.000063
N56L56LctCctT44P.10.000063
N56L56SCTCTCT23All0
N56L56SCTcTCc13All0
N56L56LctCctT33AY.1130.000427
N56L56ICtcAtc33AY.200.000117
N56L56FCtcTtc33AY.98.10.000145
N56L56FCtcTtc33B.1.1100.013575
N56L56FCtcTtc33B.1.1770.00004
N56L56LctCctT23B.1.1770.000026
N56L56LctCctA13B.1.1770.000013
N56L56LctCctT33D.20.000225
N56L56ICtCAtA12A0.000387
N56L56ICtcAtc12A0.000387
N56L56LctCctT22AY.1020.000053
N56L56FCtcTtc22AY.140.000176
N56L56LctCctT22AY.390.000049
N56L56ICtcAtc22AY.40.000003
N56L56LctCctT22AY.46.30.001867
N56L56ICtcAtc12AY.520.000814
N56L56ICtCAtA12AY.520.000814
N56L56FCtcTtc22AY.70.000392
N56L56FCtcTtc22AY.7.20.001119
N56L56ICtcAtc22AY.75.10.000361
N56L56LctCctT22AY.98.10.000097
N56L56ICtCAtA12B0.000128
N56L56ICtcAtc12B0.000128
N56L56FCtcTtc22B.10.000018
N56L56SCTcTCc12B.1.10.000018
N56L56FCtcTtc12B.1.10.000018
N56L56PcTccCc12B.1.10.000018
N56L56PcTCcCT12B.1.10.000018
N56L56FCtCTtT12B.1.10.000018
N56L56SCTCTCT12B.1.10.000018
N56L56FCtcTtc22B.1.1600.000062
N56L56FCtcTtc22B.1.2430.000139
N56L56ICtcAtc12B.1.3010.005917
N56L56ICtCAtA12B.1.3010.005917
N56L56LctCctT22B.1.3690.00057
N56L56FCtcTtc22B.1.466.20.000782
N56L56FCtcTtc22B.1.5260.000047
N56L56ICtCAtA12B.1.6230.000536
N56L56ICtcAtc12B.1.6230.000536
N56L56LctCctT22C.370.000232
N56L56FCtcTtc22D.20.00015
N56L56delCTC---22P.10.000032
N56L56FCtcTtc22P.1.120.000968
N56L56LctCctT22P.1.140.000096
N56L56PcTccCc110.055556
N56L56LctCctA11A0.000387
N56L56HcTccAc11All0
N56L56ACTcGCc11All0
N56L56TCTcACc11All0
N56L56RcTccGc11All0
N56L56LctCctT11AY.1000.000046
N56L56FCtcTtc11AY.1000.000046
N56L56LctCctT11AY.1010.00049
N56L56LctCctT11AY.1100.000113
N56L56LctCctT11AY.1110.000183
N56L56FCtcTtc11AY.1130.000142
N56L56LctCctT11AY.116.10.000311
N56L56FCtcTtc11AY.1190.000035
N56L56ICtcAtc11AY.1210.000135
N56L56FCtcTtc11AY.1210.000135
N56L56LctCctT11AY.140.000088
N56L56FCtcTtc11AY.200.000039
N56L56LctCctG11AY.230.00007
N56L56SCTCTCT11AY.250.000006
N56L56LctCctT11AY.260.000028
N56L56LctCctT11AY.290.000016
N56L56FCtcTtc11AY.3.10.000085
N56L56LctCctT11AY.320.000532
N56L56ICtcAtc11AY.330.000067
N56L56ICtcAtc11AY.390.000025
N56L56VCtcGtc11AY.40.000002
N56L56FCtcTtc11AY.4.50.000107
N56L56LctCctT11AY.420.00004
N56L56LctCctT11AY.470.000031
N56L56PcTCcCT11AY.480.000465
N56L56ICtcAtc11AY.50.000021
N56L56LctCctT11AY.50.000021
N56L56FCtcTtc11AY.50.000021
N56L56LctCctA11AY.520.000814
N56L56PcTccCc11AY.540.000095
N56L56FCtcTtc11AY.590.00053
N56L56FCtcTtc11AY.610.000105
N56L56LctCctT11AY.720.001361
N56L56ICtcAtc11AY.850.000427
N56L56delCTC---11AY.9.20.000037
N56L56LctCctT11AY.99.20.000092
N56L56LctCctT11AZ.10.000867
N56L56RcTccGc11B0.000128
N56L56FCtcTtc11B0.000128
N56L56PcTccCc11B.10.000009
N56L56delCTC---11B.1.10.000018
N56L56ICtcAtc11B.1.10.000018
N56L56delCTC---11B.1.1.1390.022727
N56L56FCtcTtc11B.1.1.1570.000913
N56L56FCtcTtc11B.1.1.2140.000055
N56L56delCTC---11B.1.1.2160.00089
N56L56LctCctT11B.1.1.2220.000204
N56L56FCtcTtc11B.1.1.3180.000302
N56L56LctCctT11B.1.1.3690.000446
N56L56FCtcTtc11B.1.1.4340.000349
N56L56LctCctT11B.1.1.5190.00004
N56L56FCtcTtc11B.1.1.5190.00004
N56L56delCTC---11B.1.1.630.000386
N56L56ICtcAtc11B.1.1.70.000001
N56L56HcTccAc11B.1.1.70.000001
N56L56VCtcGtc11B.1.1.700.000341
N56L56ICtcAtc11B.1.1.700.000341
N56L56FCtcTtc11B.1.1.830.00271
N56L56VCtcGtc11B.1.1770.000013
N56L56ICtcAtc11B.1.1770.000013
N56L56LctCctT11B.1.177.120.000152
N56L56ICtcAtc11B.1.177.600.000218
N56L56ACTcGCc11B.1.177.630.002703
N56L56FCtcTtc11B.1.20.000009
N56L56ICtcAtc11B.1.20.000009
N56L56FCtcTtc11B.1.2210.000071
N56L56LctCctT11B.1.2340.000132
N56L56PcTccCc11B.1.2430.00007
N56L56LctCctT11B.1.2430.00007
N56L56LctCctT11B.1.2580.000067
N56L56LctCctT11B.1.258.110.000396
N56L56FCtcTtc11B.1.258.170.000104
N56L56LctCctA11B.1.3010.005917
N56L56FCtcTtc11B.1.360.000146
N56L56TCTcACc11B.1.360.000146
N56L56FCtcTtc11B.1.3960.000706
N56L56LctCctT11B.1.3970.004854
N56L56FCtcTtc11B.1.4290.000024
N56L56LctCctT11B.1.4290.000024
N56L56delCTC---11B.1.4390.005917
N56L56ICtcAtc11B.1.5260.000024
N56L56LctCctA11B.1.5800.004065
N56L56ICtcAtc11B.1.5820.000491
N56L56FCtcTtc11B.1.5950.000261
N56L56LctCctT11B.1.6110.04
N56L56FCtcTtc11B.1.617.10.000129
N56L56VCtcGtc11B.1.617.20.000004
N56L56ICtcAtc11B.1.617.20.000004
N56L56LctCctT11B.1.617.30.002985
N56L56LctCctT11B.1.6200.000946
N56L56LctCctT11B.1.6210.000089
N56L56LctCctT11B.1.621.10.000506
N56L56LctCctA11B.1.6230.000536
N56L56FCtcTtc11B.1.6280.000352
N56L56FCtcTtc11B.1.6370.000073
N56L56FCtcTtc11P.1.140.000048
N56L56FCtcTtc11P.1.150.000232
N56L56FCtcTtc11P.1.170.000162
N56L56LctCctT11P.20.000187
N56L56LctCctT11Q.80.000165