CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 54

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N54T54TsynacCacT325430870.94867928433-28435
N54T54TsynacCacA32541450.044560528433-28435
N54T54TsynacCacG3254220.0067609128433-28435
N54T54SnonsynAccTcc50360.7228433-28435
N54T54SnonsynaCcaGc50140.2828433-28435
N54T54AnonsynAccGcc1515128433-28435
N54T54InonsynaCcaTc1010128433-28435
N54T54deldelACC---88128433-28435
N54T54PnonsynAccCcc870.87528433-28435
N54T54PnonsynAcCCcG810.12528433-28435
N54T54RnonsynACcCGc520.428433-28435
N54T54RnonsynACCCGG510.228433-28435
N54T54RnonsynaCCaGG510.228433-28435
N54T54RnonsynaCCaGA510.228433-28435
N54T54NnonsynaCcaAc44128433-28435
N54T54del1delAcc-cc430.7528433-28435
N54T54del1delaCCa-T410.2528433-28435
N54T54HnonsynACcCAc22128433-28435

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N54T54TacCacT30873254All0.00059
N54T54TacCacA1453254All0.000028
N54T54TacCacG223254All0.000004
N54T54TacCacT550567B.1.1.70.000492
N54T54TacCacA15567B.1.1.70.000013
N54T54TacCacG2567B.1.1.70.000002
N54T54TacCacT446447C.370.051764
N54T54TacCacA1447C.370.000116
N54T54TacCacT321323AY.440.001954
N54T54TacCacA2323AY.440.000012
N54T54TacCacT227240B.1.617.20.000855
N54T54TacCacA11240B.1.617.20.000041
N54T54TacCacG2240B.1.617.20.000008
N54T54TacCacT178178B.1.4290.004188
N54T54TacCacT140145P.10.002206
N54T54TacCacA3145P.10.000047
N54T54TacCacG2145P.10.000032
N54T54TacCacT103130AY.40.00016
N54T54TacCacA27130AY.40.000042
N54T54TacCacT123123B.1.5260.002891
N54T54TacCacT8686B.1.5930.934783
N54T54TacCacT6666R.10.005941
N54T54SAccTcc3650All0.000007
N54T54SaCcaGc1450All0.000003
N54T54TacCacT5050B.1.20.00044
N54T54TacCacT3644B.10.00033
N54T54TacCacA744B.10.000064
N54T54TacCacG144B.10.000009
N54T54TacCacT3341AY.430.000146
N54T54TacCacA741AY.430.000031
N54T54TacCacG141AY.430.000004
N54T54TacCacT3740AY.250.000223
N54T54TacCacA340AY.250.000018
N54T54TacCacT3939AY.4.20.000846
N54T54TacCacT2735B.1.1770.000356
N54T54TacCacA835B.1.1770.000105
N54T54TacCacT2034AY.30.000199
N54T54TacCacA1434AY.30.000139
N54T54TacCacT2626AY.46.60.001877
N54T54TacCacT2426B.1.1600.000749
N54T54TacCacA226B.1.1600.000062
N54T54TacCacT2525AY.1020.000663
N54T54TacCacT2323B.1.617.10.002966
N54T54TacCacT1821AY.1030.000112
N54T54TacCacA321AY.1030.000019
N54T54TacCacT1818B.1.3510.000535
N54T54TacCacT1616AY.290.000252
N54T54AAccGcc1515All0.000003
N54T54TacCacT1212B.1.1.3090.070175
N54T54TacCacT1212B.1.110.30.008621
N54T54TacCacT1111AY.1180.000689
N54T54TacCacT811AY.200.000311
N54T54TacCacA311AY.200.000117
N54T54TacCacA1011AY.340.00097
N54T54TacCacT111AY.340.000097
N54T54SAccTcc1011AY.440.000061
N54T54SaCcaGc111AY.440.000006
N54T54TacCacT1111AY.70.002156
N54T54TacCacT1111B.1.177.600.002403
N54T54TacCacT1111B.1.6370.000804
N54T54IaCcaTc1010All0.000002
N54T54TacCacT1010AY.1000.00046
N54T54TacCacT810AY.330.000534
N54T54TacCacA210AY.330.000134
N54T54TacCacT1010AY.50.000206
N54T54TacCacT1010B.1.10.000181
N54T54TacCacT89AY.98.10.000387
N54T54TacCacG19AY.98.10.000048
N54T54TacCacT99B.1.1.2980.007759
N54T54delACC---88All0.000002
N54T54PAccCcc78All0.000001
N54T54PAcCCcG18All0
N54T54TacCacT78AY.260.000198
N54T54TacCacA18AY.260.000028
N54T54TacCacT88B.1.1.5190.000318
N54T54TacCacT88B.1.1.700.002729
N54T54TacCacT88B.1.177.650.005323
N54T54TacCacT78B.1.6210.00062
N54T54TacCacA18B.1.6210.000089
N54T54SAccTcc77B.1.2580.000466
N54T54TacCacT77Q.80.001154
N54T54TacCacT66AY.1090.004438
N54T54TacCacT46AY.1170.000338
N54T54TacCacA26AY.1170.000169
N54T54TacCacT46AY.390.000099
N54T54TacCacA26AY.390.000049
N54T54TacCacT66B.1.1.2140.000333
N54T54TacCacT66B.1.3110.001647
N54T54TacCacT66C.36.30.003403
N54T54RACcCGc25All0
N54T54RaCCaGA15All0
N54T54RACCCGG15All0
N54T54RaCCaGG15All0
N54T54TacCacT55AY.10.001979
N54T54TacCacT55AY.1130.000712
N54T54TacCacT45AY.1190.000141
N54T54TacCacG15AY.1190.000035
N54T54TacCacT55AY.360.000741
N54T54TacCacT55B.1.130.011876
N54T54TacCacT55B.1.177.40.001055
N54T54TacCacT55B.1.2210.000355
N54T54TacCacT55B.1.5750.001517
N54T54TacCacT45P.1.140.000191
N54T54TacCacA15P.1.140.000048
N54T54TacCacT55P.30.007974
N54T54NaCcaAc44All0.000001
N54T54del1Acc-cc34All0.000001
N54T54del1aCCa-T14All0
N54T54TacCacT44AY.39.10.000158
N54T54TacCacT44AY.980.000316
N54T54TacCacT44B.1.2320.002149
N54T54TacCacT44B.1.2430.000278
N54T54TacCacT44B.1.258.170.000416
N54T54TacCacG44B.1.4090.003125
N54T54TacCacT44B.1.4270.000202
N54T54SAccTcc44B.1.617.20.000015
N54T54TacCacT44P.1.120.001936
N54T54RACCCGG130.055556
N54T54RACcCGc130.055556
N54T54RaCCaGG130.055556
N54T54TacCacT23A.23.10.001408
N54T54TacCacA13A.23.10.000704
N54T54TacCacG23AY.230.000139
N54T54TacCacT13AY.230.00007
N54T54TacCacT33AY.320.001597
N54T54TacCacT33AY.470.000093
N54T54TacCacT33AY.5.20.007389
N54T54TacCacT33AY.580.002722
N54T54TacCacA23AY.60.000082
N54T54TacCacT13AY.60.000041
N54T54TacCacT33AY.750.000168
N54T54TacCacT33B0.000383
N54T54TacCacT33B.1.1650.035714
N54T54SAccTcc33B.1.20.000026
N54T54TacCacA33B.1.4220.002437
N54T54AAccGcc33B.1.466.20.001174
N54T54TacCacT33B.1.617.30.008955
N54T54TacCacT33C.360.002732
N54T54TacCacT33D.20.000225
N54T54TacCacT33Q.10.000379
N54T54PAccCcc120.055556
N54T54PAcCCcG120.055556
N54T54TacCacT22A.10.000564
N54T54HACcCAc22All0
N54T54TacCacT22AY.1080.002205
N54T54TacCacG12AY.1110.000183
N54T54TacCacT12AY.1110.000183
N54T54TacCacT22AY.1160.000574
N54T54TacCacT22AY.116.10.000623
N54T54TacCacT22AY.1200.000074
N54T54SaCcaGc22AY.340.000194
N54T54SAccTcc22AY.390.000049
N54T54AAccGcc22AY.40.000003
N54T54SAccTcc12AY.40.000002
N54T54SaCcaGc12AY.40.000002
N54T54TacCacT22AY.420.00008
N54T54TacCacT22AY.46.40.000329
N54T54TacCacT22AY.5.30.000675
N54T54SaCcaGc22AY.740.000231
N54T54TacCacT22AY.75.10.000361
N54T54TacCacT22AY.850.000854
N54T54TacCacT22AY.940.000885
N54T54TacCacT22AY.99.20.000184
N54T54SAccTcc22B.10.000018
N54T54NaCcaAc22B.10.000018
N54T54PAccCcc22B.1.10.000036
N54T54TacCacT22B.1.1.1210.004854
N54T54TacCacT22B.1.1.1710.007353
N54T54TacCacT22B.1.1.2220.000408
N54T54TacCacT22B.1.1.250.001137
N54T54TacCacA22B.1.1.2650.006309
N54T54TacCacT22B.1.1.2770.001517
N54T54TacCacT22B.1.1.2840.000215
N54T54TacCacT22B.1.1.4340.000697
N54T54TacCacT22B.1.1.470.010695
N54T54AAccGcc22B.1.1.70.000002
N54T54SaCcaGc12B.1.1.70.000001
N54T54SAccTcc12B.1.1.70.000001
N54T54TacCacT22B.1.160.200.017857
N54T54TacCacT22B.1.177.120.000303
N54T54TacCacT22B.1.177.210.000153
N54T54TacCacT22B.1.177.350.001382
N54T54TacCacT22B.1.177.810.000379
N54T54TacCacA12B.1.1890.004292
N54T54TacCacT12B.1.1890.004292
N54T54IaCcaTc22B.1.20.000018
N54T54TacCacT22B.1.2580.000133
N54T54SaCcaGc22B.1.3460.002621
N54T54TacCacA22B.1.351.20.000605
N54T54TacCacT22B.1.36.390.004435
N54T54TacCacT22B.1.3960.001411
N54T54TacCacT22B.1.5550.044444
N54T54TacCacT22B.1.5950.000522
N54T54TacCacT12B.1.5960.000087
N54T54TacCacA12B.1.5960.000087
N54T54TacCacT22B.1.6280.000705
N54T54TacCacT22C.37.10.005236
N54T54IaCcaTc22D.20.00015
N54T54TacCacT22P.1.150.000465
N54T54SaCcaGc110.055556
N54T54TacCacG110.055556
N54T54TacCacT11A.20.000662
N54T54TacCacG11A.2.5.20.001572
N54T54TacCacT11A.50.001923
N54T54TacCacT11AD.20.000219
N54T54SaCcaGc11AY.1000.000046
N54T54RACcCGc11AY.1010.00049
N54T54TacCacT11AY.1060.000335
N54T54TacCacT11AY.1070.000466
N54T54TacCacT11AY.1100.000113
N54T54SaCcaGc11AY.1170.000085
N54T54del1Acc-cc11AY.1190.000035
N54T54SAccTcc11AY.1200.000037
N54T54TacCacT11AY.1210.000135
N54T54IaCcaTc11AY.130.000161
N54T54SAccTcc11AY.230.00007
N54T54AAccGcc11AY.230.00007
N54T54AAccGcc11AY.250.000006
N54T54RaCCaGA11AY.250.000006
N54T54TacCacT11AY.280.00189
N54T54TacCacT11AY.29.10.000221
N54T54TacCacA11AY.34.10.00051
N54T54AAccGcc11AY.4.20.000022
N54T54AAccGcc11AY.430.000004
N54T54SaCcaGc11AY.5.40.000277
N54T54TacCacT11AY.610.000105
N54T54TacCacT11AY.620.000436
N54T54TacCacT11AY.740.000116
N54T54TacCacA11AY.770.001127
N54T54TacCacT11AY.800.001129
N54T54SAccTcc11AY.840.000437
N54T54TacCacT11AY.870.000833
N54T54TacCacT11AY.9.10.000084
N54T54delACC---11AY.9.20.000037
N54T54TacCacT11AY.9.20.000037
N54T54SAccTcc11AY.920.000287
N54T54TacCacG11AY.920.000287
N54T54HACcCAc11B.10.000009
N54T54PAccCcc11B.10.000009
N54T54del1Acc-cc11B.10.000009
N54T54IaCcaTc11B.10.000009
N54T54delACC---11B.10.000009
N54T54IaCcaTc11B.1.10.000018
N54T54HACcCAc11B.1.10.000018
N54T54NaCcaAc11B.1.10.000018
N54T54delACC---11B.1.10.000018
N54T54TacCacT11B.1.1.10.000327
N54T54TacCacT11B.1.1.1350.004695
N54T54delACC---11B.1.1.1390.022727
N54T54TacCacT11B.1.1.1410.002012
N54T54AAccGcc11B.1.1.1700.001247
N54T54TacCacT11B.1.1.1740.003378
N54T54TacCacT11B.1.1.2070.001182
N54T54TacCacT11B.1.1.2100.005714
N54T54delACC---11B.1.1.2160.00089
N54T54AAccGcc11B.1.1.2410.00207
N54T54TacCacT11B.1.1.280.000311
N54T54TacCacT11B.1.1.3160.000925
N54T54TacCacT11B.1.1.3720.000689
N54T54TacCacA11B.1.1.3800.009804
N54T54TacCacT11B.1.1.3890.006061
N54T54TacCacT11B.1.1.390.00051
N54T54TacCacT11B.1.1.4020.011111
N54T54AAccGcc11B.1.1.440.00241
N54T54delACC---11B.1.1.630.000386
N54T54PAccCcc11B.1.1.70.000001
N54T54del1Acc-cc11B.1.1.70.000001
N54T54IaCcaTc11B.1.1600.000031
N54T54TacCacT11B.1.160.140.002119
N54T54TacCacT11B.1.160.80.001289
N54T54TacCacG11B.1.160.90.007194
N54T54TacCacT11B.1.177.630.002703
N54T54AAccGcc11B.1.177.630.002703
N54T54TacCacT11B.1.177.70.000165
N54T54TacCacT11B.1.177.730.000566
N54T54TacCacT11B.1.177.770.000726
N54T54TacCacT11B.1.177.830.001481
N54T54TacCacA11B.1.177.860.000183
N54T54TacCacT11B.1.1950.005025
N54T54NaCcaAc11B.1.20.000009
N54T54del1aCCa-T11B.1.20.000009
N54T54TacCacA11B.1.220.001318
N54T54TacCacT11B.1.2340.000132
N54T54IaCcaTc11B.1.2430.00007
N54T54TacCacT11B.1.3230.020833
N54T54PAccCcc11B.1.3380.008621
N54T54TacCacT11B.1.3430.020833
N54T54TacCacT11B.1.351.30.000876
N54T54TacCacT11B.1.36.170.000494
N54T54TacCacT11B.1.36.260.002857
N54T54TacCacA11B.1.36.290.000517
N54T54TacCacT11B.1.3690.000285
N54T54TacCacT11B.1.3890.001002
N54T54TacCacT11B.1.4130.004255
N54T54TacCacT11B.1.429.10.012048
N54T54delACC---11B.1.4390.005917
N54T54TacCacT11B.1.4530.003236
N54T54TacCacT11B.1.466.20.000391
N54T54TacCacT11B.1.4710.002732
N54T54TacCacA11B.1.4880.2
N54T54TacCacT11B.1.4990.00105
N54T54TacCacT11B.1.5030.002488
N54T54TacCacT11B.1.5240.001406
N54T54TacCacT11B.1.5810.009434
N54T54TacCacA11B.1.5820.000491
N54T54TacCacG11B.1.6230.000536
N54T54SaCcaGc11B.1.6370.000073
N54T54TacCacT11B.110.005128
N54T54IaCcaTc11B.40.002208
N54T54TacCacT11B.60.00091
N54T54TacCacT11B.610.005747
N54T54TacCacT11C.10.002392
N54T54SAccTcc11C.360.000911
N54T54PAccCcc11P.10.000016
N54T54SAccTcc11P.10.000016
N54T54delACC---11P.10.000016
N54T54TacCacT11P.1.10.000318
N54T54TacCacT11P.1.100.000269
N54T54TacCacT11P.1.10.10.00813
N54T54TacCacT11P.1.170.000162
N54T54TacCacT11P.1.20.001156
N54T54TacCacT11P.20.000187
N54T54TacCacT11Q.30.000145