CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 53

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N53F53FsynttCttT3285332853128430-28432
N53F53YnonsyntTctAc750750128430-28432
N53F53LnonsynttCttA32150.4687528430-28432
N53F53LnonsynTtcCtc3290.2812528430-28432
N53F53LnonsynttCttG3260.187528430-28432
N53F53LnonsynTtCCtT3220.062528430-28432
N53F53SnonsyntTctCc1390.69230828430-28432
N53F53SnonsynTTcAGc1310.076923128430-28432
N53F53SnonsynTTCAGT1310.076923128430-28432
N53F53SnonsyntTCtCA1310.076923128430-28432
N53F53SnonsyntTCtCT1310.076923128430-28432
N53F53deldelTTC---88128430-28432
N53F53VnonsynTtcGtc55128430-28432
N53F53CnonsyntTCtGT420.528430-28432
N53F53CnonsyntTctGc420.528430-28432
N53F53InonsynTtcAtc420.528430-28432
N53F53del1delttCtt-420.528430-28432
N53F53RnonsynTTCCGT420.528430-28432
N53F53InonsynTtCAtT410.2528430-28432
N53F53InonsynTtCAtA410.2528430-28432
N53F53RnonsynTTCAGA410.2528430-28432
N53F53del1deltTCtC-410.2528430-28432
N53F53RnonsynTTcCGc410.2528430-28432
N53F53del1delTTc-Cc410.2528430-28432
N53F53TnonsynTTCACT310.33333328430-28432
N53F53TnonsynTTCACA310.33333328430-28432
N53F53TnonsynTTcACc310.33333328430-28432
N53F53XnonsyntTCtGA11128430-28432
N53F53AnonsynTTcGCc11128430-28432

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N53F53FttCttT3285332853All0.006284
N53F53FttCttT1319613196B.1.617.20.049688
N53F53FttCttT1032910329AY.1000.475202
N53F53FttCttT26062606AY.430.011546
N53F53FttCttT938938B.1.1.70.00084
N53F53FttCttT931931B.1.214.20.558153
N53F53FttCttT924924AY.40.001438
N53F53YtTctAc750750All0.000143
N53F53YtTctAc590590AY.7.10.066494
N53F53FttCttT559559AY.1180.035021
N53F53FttCttT276276AY.390.00682
N53F53FttCttT272272AY.440.001656
N53F53FttCttT182182AY.1170.015382
N53F53FttCttT181181AY.250.001089
N53F53FttCttT168168AY.1030.001043
N53F53FttCttT151151AY.30.001502
N53F53FttCttT106106AY.1020.00281
N53F53FttCttT104104AY.860.086307
N53F53FttCttT9898AY.116.10.03052
N53F53YtTctAc8686B.1.1.70.000077
N53F53FttCttT7878AY.980.006162
N53F53FttCttT7373B.1.4290.001718
N53F53FttCttT6262AY.420.002494
N53F53FttCttT5454B.1.20.000475
N53F53FttCttT5151B.10.000467
N53F53FttCttT4545B.1.360.006566
N53F53FttCttT4444AY.840.019248
N53F53FttCttT3737B.1.6280.013037
N53F53FttCttT3636AY.1130.005126
N53F53FttCttT3636AY.4.20.000781
N53F53FttCttT3434AY.900.023272
N53F53FttCttT3333AY.700.006881
N53F53FttCttT3333AY.920.00948
N53F53LttCttA1532All0.000003
N53F53LTtcCtc932All0.000002
N53F53LttCttG632All0.000001
N53F53LTtCCtT232All0
N53F53FttCttT3131B0.003962
N53F53FttCttT3030AY.260.000849
N53F53FttCttT3030AY.290.000473
N53F53YtTctAc2828AY.40.000044
N53F53FttCttT2424AY.50.000496
N53F53FttCttT2323AD.20.005036
N53F53FttCttT2222AY.5.30.007422
N53F53FttCttT2222B.1.1770.00029
N53F53FttCttT2222P.10.000347
N53F53FttCttT2121AY.39.10.000832
N53F53FttCttT2020AY.1190.000706
N53F53FttCttT2020B.1.5260.00047
N53F53FttCttT1919AY.750.001064
N53F53FttCttT1919B.1.2580.001264
N53F53FttCttT1818AY.200.0007
N53F53FttCttT1818AY.98.10.000872
N53F53FttCttT1818B.1.6210.001593
N53F53FttCttT1717AY.1110.003114
N53F53FttCttT1717AY.1200.000632
N53F53FttCttT1717AY.190.019384
N53F53FttCttT1717AY.350.003962
N53F53FttCttT1717B.1.10.000308
N53F53FttCttT1717B.1.5750.005158
N53F53FttCttT1616AY.790.01937
N53F53FttCttT1616AY.950.012177
N53F53FttCttT1616B.1.1.10.005227
N53F53FttCttT1616B.1.9.50.090909
N53F53FttCttT1515AY.340.001454
N53F53FttCttT1515AY.450.001825
N53F53FttCttT1515B.1.3510.000446
N53F53FttCttT1515B.1.5960.001307
N53F53FttCttT1414AY.1010.006866
N53F53FttCttT1414AY.1100.001578
N53F53FttCttT1414AY.460.001457
N53F53StTctCc913All0.000002
N53F53STTcAGc113All0
N53F53STTCAGT113All0
N53F53StTCtCA113All0
N53F53StTCtCT113All0
N53F53FttCttT1313AY.620.005664
N53F53FttCttT1212AY.810.023904
N53F53FttCttT1111AY.230.000767
N53F53FttCttT1111AY.46.20.006989
N53F53FttCttT1111C.370.001277
N53F53FttCttT1010AY.46.60.000722
N53F53FttCttT1010AY.470.000311
N53F53FttCttT1010B.1.1.5190.000397
N53F53FttCttT1010B.1.1600.000312
N53F53YtTctAc99AY.1030.000056
N53F53FttCttT99AY.780.013867
N53F53FttCttT99AY.850.003845
N53F53FttCttT99AY.9.20.000331
N53F53FttCttT99B.1.2340.001187
N53F53FttCttT99B.1.4090.007031
N53F53delTTC---88All0.000002
N53F53FttCttT88AY.1050.005145
N53F53FttCttT88AY.330.000534
N53F53FttCttT88B.1.214.30.057143
N53F53FttCttT88Q.10.001011
N53F53FttCttT77AY.1060.002344
N53F53FttCttT77AY.1090.005178
N53F53FttCttT77AY.1160.002007
N53F53FttCttT77AY.29.10.001544
N53F53FttCttT77AY.360.001037
N53F53FttCttT77AY.540.000667
N53F53FttCttT77AY.930.001912
N53F53LttCttA47B.10.000037
N53F53LTtcCtc27B.10.000018
N53F53LTtCCtT17B.10.000009
N53F53FttCttT77B.1.1.250.00398
N53F53FttCttT77B.1.2210.000497
N53F53FttCttT77B.1.4270.000353
N53F53FttCttT66AY.10.002374
N53F53FttCttT66AY.1080.006615
N53F53FttCttT66AY.210.011385
N53F53FttCttT66AY.3.10.000512
N53F53FttCttT66AY.46.50.00119
N53F53FttCttT66AY.550.005505
N53F53FttCttT66AY.880.005305
N53F53LttCttG56B0.000639
N53F53LttCttA16B0.000128
N53F53FttCttT66B.1.3290.003645
N53F53YtTctAc66B.1.617.20.000023
N53F53FttCttT66D.20.00045
N53F53FttCttT66R.10.00054
N53F53STTcAGc150.055556
N53F53STTCAGT150.055556
N53F53StTCtCA150.055556
N53F53StTctCc150.055556
N53F53StTCtCT150.055556
N53F53VTtcGtc55All0.000001
N53F53FttCttT55AW.10.015244
N53F53FttCttT55AY.1070.00233
N53F53FttCttT55AY.1210.000677
N53F53FttCttT55AY.480.002326
N53F53FttCttT55AY.60.000206
N53F53FttCttT55AY.870.004163
N53F53FttCttT55B.1.1.2790.005605
N53F53FttCttT55B.1.177.90.006658
N53F53FttCttT55B.1.6370.000365
N53F53FttCttT55P.1.140.000239
N53F53CtTCtGT24All0
N53F53CtTctGc24All0
N53F53ITtcAtc24All0
N53F53del1ttCtt-24All0
N53F53RTTCCGT24All0
N53F53ITtCAtT14All0
N53F53RTTcCGc14All0
N53F53del1tTCtC-14All0
N53F53ITtCAtA14All0
N53F53del1TTc-Cc14All0
N53F53RTTCAGA14All0
N53F53FttCttT44AY.300.001583
N53F53FttCttT44AY.320.00213
N53F53YtTctAc44AY.430.000018
N53F53FttCttT44AY.600.003752
N53F53FttCttT44AY.680.001095
N53F53FttCttT44AY.730.002661
N53F53FttCttT44AY.940.001771
N53F53FttCttT44AY.990.004197
N53F53FttCttT44B.1.1.1890.006051
N53F53FttCttT44B.1.1.500.002716
N53F53YtTctAc44B.1.20.000035
N53F53FttCttT44B.1.2430.000278
N53F53FttCttT44B.1.258.170.000416
N53F53TTTCACA130.055556
N53F53ITtcAtc130.055556
N53F53TTTcACc130.055556
N53F53ITtCAtT130.055556
N53F53TTTCACT130.055556
N53F53ITtCAtA130.055556
N53F53FttCttT33A.2.50.001497
N53F53TTTCACT13All0
N53F53TTTcACc13All0
N53F53TTTCACA13All0
N53F53FttCttT33AV.10.015152
N53F53FttCttT33AY.1140.000693
N53F53FttCttT33AY.130.000483
N53F53FttCttT33AY.140.000264
N53F53FttCttT33AY.270.000194
N53F53FttCttT33AY.34.10.00153
N53F53FttCttT33AY.380.001498
N53F53FttCttT33AY.4.50.000322
N53F53LttCttA33AY.430.000013
N53F53FttCttT33AY.46.10.00308
N53F53FttCttT33AY.610.000314
N53F53FttCttT33AY.670.001393
N53F53YtTctAc33AY.70.000588
N53F53FttCttT33AY.910.002191
N53F53FttCttT33AY.99.20.000276
N53F53FttCttT33B.1.1.1530.003286
N53F53FttCttT33B.1.1.2010.073171
N53F53YtTctAc33B.1.1770.00004
N53F53FttCttT33B.1.214.10.06
N53F53FttCttT33B.1.6230.001609
N53F53FttCttT33B.1.6310.010101
N53F53FttCttT33C.36.30.001702
N53F53FttCttT33C.380.024194
N53F53LTtcCtc120.055556
N53F53CtTctGc120.055556
N53F53LttCttA120.055556
N53F53CtTCtGT120.055556
N53F53FttCttT22A.10.000564
N53F53FttCttT22AU.30.004219
N53F53FttCttT22AY.1040.003968
N53F53FttCttT22AY.120.20.002571
N53F53FttCttT22AY.16.10.00094
N53F53YtTctAc22AY.440.000012
N53F53FttCttT22AY.530.000575
N53F53FttCttT22AY.690.000373
N53F53VTtcGtc22B.1.10.000036
N53F53LTtcCtc12B.1.10.000018
N53F53LttCttA12B.1.10.000018
N53F53FttCttT22B.1.1.3060.000877
N53F53FttCttT22B.1.1.3070.005063
N53F53FttCttT22B.1.1.330.000842
N53F53FttCttT22B.1.1.370.000386
N53F53FttCttT22B.1.1.4160.00181
N53F53FttCttT22B.1.1.4200.002012
N53F53LTtcCtc22B.1.1.70.000002
N53F53FttCttT22B.1.2390.002442
N53F53FttCttT22B.1.258.110.000793
N53F53YtTctAc22B.1.3510.000059
N53F53YtTctAc22B.1.3690.00057
N53F53FttCttT22B.1.466.20.000782
N53F53FttCttT22B.1.4740.003802
N53F53FttCttT22B.1.5240.002813
N53F53FttCttT22B.1.5650.001621
N53F53FttCttT22B.1.617.10.000258
N53F53FttCttT22B.6.60.001778
N53F53FttCttT22C.350.001548
N53F53RTTcCGc12P.10.000016
N53F53CtTCtGT12P.10.000016
N53F53CtTctGc12P.10.000016
N53F53RTTCCGT12P.10.000016
N53F53LTtCCtT12P.10.000016
N53F53LTtcCtc12P.10.000016
N53F53FttCttT22P.1.120.000968
N53F53FttCttT22P.1.170.000324
N53F53FttCttT22Q.80.00033
N53F53XtTCtGA110.055556
N53F53FttCttT110.055556
N53F53RTTCAGA110.055556
N53F53LttCttA11A0.000387
N53F53FttCttT11A0.000387
N53F53StTctCc11A.50.001923
N53F53XtTCtGA11All0
N53F53ATTcGCc11All0
N53F53FttCttT11AU.20.002421
N53F53RTTCCGT11AY.1010.00049
N53F53YtTctAc11AY.1060.000335
N53F53YtTctAc11AY.1170.000085
N53F53del1tTCtC-11AY.1190.000035
N53F53FttCttT11AY.120.000316
N53F53FttCttT11AY.160.00038
N53F53YtTctAc11AY.200.000039
N53F53FttCttT11AY.240.000431
N53F53StTctCc11AY.250.000006
N53F53ITtcAtc11AY.250.000006
N53F53LttCttA11AY.330.000067
N53F53FttCttT11AY.370.000316
N53F53FttCttT11AY.39.20.001541
N53F53StTctCc11AY.40.000002
N53F53FttCttT11AY.4.40.000409
N53F53FttCttT11AY.410.000294
N53F53FttCttT11AY.46.40.000165
N53F53FttCttT11AY.510.000909
N53F53LttCttA11AY.520.000814
N53F53FttCttT11AY.570.000656
N53F53YtTctAc11AY.580.000907
N53F53FttCttT11AY.580.000907
N53F53LTtcCtc11AY.590.00053
N53F53YtTctAc11AY.60.000041
N53F53FttCttT11AY.640.000595
N53F53FttCttT11AY.650.000533
N53F53FttCttT11AY.7.10.000113
N53F53FttCttT11AY.710.000475
N53F53FttCttT11AY.720.001361
N53F53FttCttT11AY.740.000116
N53F53YtTctAc11AY.750.000056
N53F53FttCttT11AY.75.10.00018
N53F53FttCttT11AY.770.001127
N53F53FttCttT11AY.80.000606
N53F53FttCttT11AY.830.001724
N53F53FttCttT11AY.890.004902
N53F53FttCttT11AY.90.000068
N53F53FttCttT11AY.9.10.000084
N53F53delTTC---11AY.9.20.000037
N53F53FttCttT11AY.960.002075
N53F53YtTctAc11AY.99.20.000092
N53F53del1ttCtt-11B.10.000009
N53F53YtTctAc11B.10.000009
N53F53VTtcGtc11B.10.000009
N53F53delTTC---11B.1.10.000018
N53F53FttCttT11B.1.1.1290.009174
N53F53delTTC---11B.1.1.1390.022727
N53F53FttCttT11B.1.1.1590.004673
N53F53delTTC---11B.1.1.2160.00089
N53F53FttCttT11B.1.1.2220.000204
N53F53FttCttT11B.1.1.2490.071429
N53F53FttCttT11B.1.1.2650.003155
N53F53FttCttT11B.1.1.280.000311
N53F53FttCttT11B.1.1.2840.000107
N53F53FttCttT11B.1.1.3030.002762
N53F53FttCttT11B.1.1.3260.001761
N53F53FttCttT11B.1.1.3280.016949
N53F53FttCttT11B.1.1.3540.004386
N53F53FttCttT11B.1.1.3680.003086
N53F53FttCttT11B.1.1.3750.011905
N53F53FttCttT11B.1.1.5280.004808
N53F53delTTC---11B.1.1.630.000386
N53F53del1ttCtt-11B.1.1.70.000001
N53F53VTtcGtc11B.1.1.70.000001
N53F53FttCttT11B.1.1.990.02381
N53F53FttCttT11B.1.1240.007812
N53F53FttCttT11B.1.140.017544
N53F53FttCttT11B.1.1470.000756
N53F53StTctCc11B.1.160.140.002119
N53F53LTtcCtc11B.1.1770.000013
N53F53FttCttT11B.1.177.150.000631
N53F53FttCttT11B.1.177.210.000076
N53F53FttCttT11B.1.177.460.000918
N53F53FttCttT11B.1.177.550.002331
N53F53del1TTc-Cc11B.1.177.630.002703
N53F53VTtcGtc11B.1.177.730.000566
N53F53ATTcGCc11B.1.177.730.000566
N53F53StTctCc11B.1.177.730.000566
N53F53FttCttT11B.1.177.750.001041
N53F53FttCttT11B.1.177.870.000728
N53F53StTctCc11B.1.20.000009
N53F53FttCttT11B.1.2230.002778
N53F53FttCttT11B.1.2320.000537
N53F53YtTctAc11B.1.2580.000067
N53F53LttCttA11B.1.3010.005917
N53F53FttCttT11B.1.3110.000275
N53F53FttCttT11B.1.3200.001245
N53F53FttCttT11B.1.36.170.000494
N53F53FttCttT11B.1.3690.000285
N53F53FttCttT11B.1.3750.00082
N53F53FttCttT11B.1.3960.000706
N53F53LttCttG11B.1.4160.001269
N53F53delTTC---11B.1.4390.005917
N53F53FttCttT11B.1.4530.003236
N53F53FttCttT11B.1.5170.000427
N53F53FttCttT11B.1.5250.000113
N53F53FttCttT11B.1.5330.009615
N53F53FttCttT11B.1.5600.00463
N53F53FttCttT11B.1.575.10.002439
N53F53FttCttT11B.1.5820.000491
N53F53StTctCc11B.1.5820.000491
N53F53FttCttT11B.1.5950.000261
N53F53FttCttT11B.1.6090.000479
N53F53FttCttT11B.1.6200.000946
N53F53delTTC---11B.1.6210.000089
N53F53LttCttA11B.1.6230.000536
N53F53FttCttT11B.1.6300.005236
N53F53FttCttT11B.1.6320.006711
N53F53YtTctAc11B.1.6370.000073
N53F53FttCttT11B.1.80.001972
N53F53FttCttT11B.270.015385
N53F53FttCttT11B.40.002208
N53F53FttCttT11B.400.000364
N53F53StTctCc11B.550.00295
N53F53FttCttT11C.360.000911
N53F53FttCttT11N.50.001767
N53F53delTTC---11P.10.000016
N53F53FttCttT11P.1.150.000232
N53F53YtTctAc11P.1.70.000319