CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 49

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N49T49InonsynaCtaTt138313820.99927728418-28420
N49T49InonsynaCTaTC138310.00072306628418-28420
N49T49NnonsynaCtaAt1621600.98765428418-28420
N49T49NnonsynaCTaAC16220.012345728418-28420
N49T49VnonsynACtGTt80790.987528418-28420
N49T49VnonsynACTGTG8010.012528418-28420
N49T49AnonsynActGct41400.9756128418-28420
N49T49AnonsynAcTGcC4110.024390228418-28420
N49T49TsynacTacC40190.47528418-28420
N49T49TsynacTacA40180.4528418-28420
N49T49TsynacTacG4030.07528418-28420
N49T49deldelACT---1111128418-28420
N49T49SnonsynaCtaGt750.71428628418-28420
N49T49SnonsynActTct720.28571428418-28420
N49T49PnonsynActCct55128418-28420
N49T49RnonsynaCTaGA22128418-28420
N49T49DnonsynACtGAt210.528418-28420
N49T49DnonsynACTGAC210.528418-28420
N49T49XnonsynACTTGA210.528418-28420
N49T49del1delAct-ct210.528418-28420
N49T49del1delacTac-210.528418-28420
N49T49XnonsynACTTAA210.528418-28420
N49T49EnonsynACTGAG11128418-28420

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N49T49IaCtaTt13821383All0.000264
N49T49IaCTaTC11383All0
N49T49IaCtaTt666666AY.520.542345
N49T49IaCtaTt245245B.1.617.20.000923
N49T49NaCtaAt160162All0.000031
N49T49NaCTaAC2162All0
N49T49VACtGTt7980All0.000015
N49T49VACTGTG180All0
N49T49NaCtaAt7979B.1.1.70.000071
N49T49VACtGTt6666AY.520.053746
N49T49IaCtaTt6262B.1.10.001125
N49T49IaCtaTt4343B.1.1.70.000038
N49T49AActGct4041All0.000008
N49T49AAcTGcC141All0
N49T49TacTacC1940All0.000004
N49T49TacTacA1840All0.000003
N49T49TacTacG340All0.000001
N49T49IaCtaTt3737AY.610.003877
N49T49IaCtaTt3535AY.40.000054
N49T49IaCtaTt3030AY.620.013072
N49T49IaCtaTt3030P.10.000473
N49T49IaCtaTt2222AY.430.000097
N49T49NaCtaAt2121AY.40.000033
N49T49IaCtaTt2121N.50.037102
N49T49NaCtaAt1616B.1.10.00029
N49T49IaCtaTt1414B.1.6210.001239
N49T49IaCtaTt1313AY.1030.000081
N49T49IaCtaTt1313B.10.000119
N49T49VACtGTt1213B.1.617.20.000045
N49T49VACTGTG113B.1.617.20.000004
N49T49IaCtaTt1212B.1.20.000106
N49T49AActGct1212B.1.617.20.000045
N49T49delACT---1111All0.000002
N49T49AActGct88AY.1020.000212
N49T49IaCtaTt88B.1.1.2190.04
N49T49IaCtaTt88B.1.2580.000532
N49T49SaCtaGt57All0.000001
N49T49SActTct27All0
N49T49AActGct77AY.440.000043
N49T49IaCtaTt77B.1.1.390.003568
N49T49TacTacC47B.1.1.70.000004
N49T49TacTacA27B.1.1.70.000002
N49T49TacTacG17B.1.1.70.000001
N49T49IaCtaTt77B.1.4290.000165
N49T49IaCtaTt66B.1.1.500.004073
N49T49PActCct55All0.000001
N49T49IaCtaTt55B.1.1.2650.015773
N49T49IaCtaTt55B.1.177.600.001092
N49T49NaCtaAt55B.1.177.600.001092
N49T49TacTacA45B.1.20.000035
N49T49TacTacC15B.1.20.000009
N49T49IaCtaTt44AY.200.000155
N49T49NaCtaAt44AY.260.000113
N49T49NaCtaAt44AY.440.000024
N49T49NaCtaAt44AY.46.60.000289
N49T49IaCtaTt44AY.750.000224
N49T49IaCtaTt44B.1.1.250.002274
N49T49IaCtaTt44B.1.1.5190.000159
N49T49IaCtaTt44B.1.1770.000053
N49T49IaCtaTt44B.1.5090.003463
N49T49IaCtaTt33AY.1190.000106
N49T49TacTacA23AY.40.000003
N49T49TacTacC13AY.40.000002
N49T49TacTacC23AY.440.000012
N49T49TacTacG13AY.440.000006
N49T49IaCtaTt33AY.540.000286
N49T49PActCct33B.10.000027
N49T49NaCtaAt23B.10.000018
N49T49NaCTaAC13B.10.000009
N49T49IaCtaTt33B.1.1.2220.000612
N49T49NaCtaAt33B.1.3510.000089
N49T49NaCtaAt33B.1.617.20.000011
N49T49TacTacC220.111111
N49T49AAcTGcC120.055556
N49T49DACtGAt120.055556
N49T49DACTGAC120.055556
N49T49NaCTaAC120.055556
N49T49NaCtaAt120.055556
N49T49AActGct120.055556
N49T49RaCTaGA22All0
N49T49del1acTac-12All0
N49T49del1Act-ct12All0
N49T49XACTTGA12All0
N49T49DACTGAC12All0
N49T49DACtGAt12All0
N49T49XACTTAA12All0
N49T49IaCtaTt22AY.1020.000053
N49T49TacTacA22AY.1040.003968
N49T49IaCtaTt22AY.250.000012
N49T49NaCtaAt22AY.250.000012
N49T49NaCtaAt22AY.30.00002
N49T49AActGct22AY.40.000003
N49T49IaCtaTt22AY.4.20.000043
N49T49AActGct22AY.430.000009
N49T49IaCtaTt22AY.440.000012
N49T49IaCtaTt22AY.470.000062
N49T49IaCtaTt22AY.75.10.000361
N49T49IaCtaTt22AY.930.000546
N49T49TacTacC22B.1.10.000036
N49T49IaCtaTt22B.1.177.110.003396
N49T49IaCtaTt22B.1.177.730.001133
N49T49IaCtaTt22B.1.2340.000264
N49T49IaCtaTt22B.1.2430.000139
N49T49IaCtaTt22B.1.5260.000047
N49T49XACTTAA12B.1.617.20.000004
N49T49XACTTGA12B.1.617.20.000004
N49T49NaCtaAt22C.370.000232
N49T49NaCtaAt22P.10.000032
N49T49EACTGAG11All0
N49T49IaCtaTt11AY.1000.000046
N49T49RaCTaGA11AY.1010.00049
N49T49NaCtaAt11AY.1020.000027
N49T49VACtGTt11AY.1030.000006
N49T49AActGct11AY.1030.000006
N49T49IaCtaTt11AY.1170.000085
N49T49TacTacA11AY.1200.000037
N49T49IaCtaTt11AY.1200.000037
N49T49SaCtaGt11AY.1200.000037
N49T49TacTacA11AY.140.000088
N49T49IaCtaTt11AY.16.10.00047
N49T49PActCct11AY.240.000431
N49T49IaCtaTt11AY.260.000028
N49T49IaCtaTt11AY.280.00189
N49T49SActTct11AY.290.000016
N49T49TacTacA11AY.290.000016
N49T49IaCtaTt11AY.30.00001
N49T49AActGct11AY.300.000396
N49T49IaCtaTt11AY.300.000396
N49T49NaCtaAt11AY.360.000148
N49T49AActGct11AY.390.000025
N49T49IaCtaTt11AY.390.000025
N49T49IaCtaTt11AY.39.10.00004
N49T49IaCtaTt11AY.39.1.10.000725
N49T49NaCtaAt11AY.4.20.000022
N49T49IaCtaTt11AY.420.00004
N49T49NaCtaAt11AY.430.000004
N49T49IaCtaTt11AY.450.000122
N49T49NaCtaAt11AY.460.000104
N49T49NaCtaAt11AY.46.20.000635
N49T49AActGct11AY.46.60.000072
N49T49IaCTaTC11AY.480.000465
N49T49IaCtaTt11AY.50.000021
N49T49AActGct11AY.550.000917
N49T49NaCtaAt11AY.60.000041
N49T49delACT---11AY.600.000938
N49T49NaCtaAt11AY.620.000436
N49T49IaCtaTt11AY.640.000595
N49T49IaCtaTt11AY.670.000464
N49T49del1acTac-11AY.790.001211
N49T49TacTacC11AY.820.001357
N49T49IaCtaTt11AY.850.000427
N49T49AActGct11AY.860.00083
N49T49IaCtaTt11AY.90.000068
N49T49delACT---11AY.9.20.000037
N49T49IaCtaTt11AY.9.20.000037
N49T49IaCtaTt11AY.980.000079
N49T49AActGct11AY.980.000079
N49T49SaCtaGt11B0.000128
N49T49TacTacC11B.10.000009
N49T49AActGct11B.10.000009
N49T49del1Act-ct11B.1.10.000018
N49T49delACT---11B.1.10.000018
N49T49delACT---11B.1.1.1390.022727
N49T49IaCtaTt11B.1.1.1610.003534
N49T49delACT---11B.1.1.2160.00089
N49T49IaCtaTt11B.1.1.2630.001558
N49T49IaCtaTt11B.1.1.2820.011628
N49T49TacTacA11B.1.1.3690.000446
N49T49TacTacC11B.1.1.3720.000689
N49T49IaCtaTt11B.1.1.4090.002833
N49T49IaCtaTt11B.1.1.630.000386
N49T49delACT---11B.1.1.630.000386
N49T49delACT---11B.1.1.70.000001
N49T49SaCtaGt11B.1.1.70.000001
N49T49IaCtaTt11B.1.1600.000031
N49T49TacTacC11B.1.1600.000031
N49T49PActCct11B.1.1670.007812
N49T49TacTacA11B.1.1770.000013
N49T49NaCtaAt11B.1.177.100.000878
N49T49delACT---11B.1.177.630.002703
N49T49TacTacC11B.1.177.730.000566
N49T49IaCtaTt11B.1.177.860.000183
N49T49SaCtaGt11B.1.20.000009
N49T49IaCtaTt11B.1.2210.000071
N49T49TacTacC11B.1.2580.000067
N49T49IaCtaTt11B.1.3510.00003
N49T49EACTGAG11B.1.360.000146
N49T49IaCtaTt11B.1.36.380.001642
N49T49delACT---11B.1.4390.005917
N49T49IaCtaTt11B.1.4620.007246
N49T49delACT---11B.1.5250.000113
N49T49TacTacA11B.1.5260.000024
N49T49NaCtaAt11B.1.5260.000024
N49T49TacTacA11B.1.617.20.000004
N49T49TacTacG11B.6.60.000889
N49T49TacTacC11C.180.002591
N49T49IaCtaTt11C.350.000774
N49T49IaCtaTt11C.36.30.000567
N49T49RaCTaGA11P.10.000016
N49T49delACT---11P.10.000016
N49T49SaCtaGt11P.10.000016
N49T49TacTacA11P.10.000016
N49T49IaCtaTt11P.1.10.000318
N49T49IaCtaTt11P.20.000187
N49T49IaCtaTt11R.10.00009
N49T49SActTct11R.10.00009