CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 419

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N419A419AsyngcCgcT301126180.86947929528-29530
N419A419AsyngcCgcA30113530.11723729528-29530
N419A419AsyngcCgcG3011400.013284629528-29530
N419A419SnonsynGccTcc574574129528-29530
N419A419TnonsynGccAcc157157129528-29530
N419A419deldelGCC---4444129528-29530
N419A419VnonsyngCcgTc41400.9756129528-29530
N419A419VnonsyngCCgTT4110.024390229528-29530
N419A419PnonsynGccCcc23210.91304329528-29530
N419A419PnonsynGcCCcT2310.043478329528-29530
N419A419PnonsynGcCCcG2310.043478329528-29530
N419A419DnonsyngCcgAc33129528-29530
N419A419GnonsyngCcgGc320.66666729528-29530
N419A419GnonsyngCCgGG310.33333329528-29530
N419A419del1delgCcg-c22129528-29530
N419A419del2delGCc--c11129528-29530
N419A419HnonsynGCcCAc11129528-29530

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N419A419AgcCgcT26183011All0.000501
N419A419AgcCgcA3533011All0.000068
N419A419AgcCgcG403011All0.000008
N419A419SGccTcc574574All0.00011
N419A419AgcCgcT494564B.1.1.70.000442
N419A419AgcCgcA48564B.1.1.70.000043
N419A419AgcCgcG22564B.1.1.70.00002
N419A419AgcCgcT447447AY.810.890438
N419A419AgcCgcT398407AY.40.000619
N419A419AgcCgcA8407AY.40.000012
N419A419AgcCgcG1407AY.40.000002
N419A419AgcCgcA121199B.1.617.20.000456
N419A419AgcCgcT78199B.1.617.20.000294
N419A419TGccAcc157157All0.00003
N419A419AgcCgcT89140AY.430.000394
N419A419AgcCgcA51140AY.430.000226
N419A419AgcCgcT9098AY.390.002224
N419A419AgcCgcA898AY.390.000198
N419A419SGccTcc8181AY.1030.000503
N419A419SGccTcc8080AY.470.002488
N419A419AgcCgcT7174AY.1030.000441
N419A419AgcCgcA374AY.1030.000019
N419A419AgcCgcT5666AY.440.000341
N419A419AgcCgcA1066AY.440.000061
N419A419AgcCgcT5959B.1.5510.076129
N419A419SGccTcc5858B.1.1.70.000052
N419A419AgcCgcT3558B.1.20.000308
N419A419AgcCgcA2058B.1.20.000176
N419A419AgcCgcG358B.1.20.000026
N419A419SGccTcc4747B.1.4270.002373
N419A419SGccTcc4646AY.40.000072
N419A419AgcCgcT4646AY.620.020044
N419A419AgcCgcT4546B.1.5650.036467
N419A419AgcCgcA146B.1.5650.00081
N419A419delGCC---4444All0.000008
N419A419AgcCgcT4444AY.760.21256
N419A419VgCcgTc4041All0.000008
N419A419VgCCgTT141All0
N419A419AgcCgcT3941B.1.2210.00277
N419A419AgcCgcG241B.1.2210.000142
N419A419TGccAcc3838B.1.1.5190.001509
N419A419SGccTcc3535B.1.617.20.000132
N419A419AgcCgcT1731B.10.000156
N419A419AgcCgcA1431B.10.000128
N419A419AgcCgcT2929AY.9.20.001065
N419A419TGccAcc2424B.1.1.70.000021
N419A419PGccCcc2123All0.000004
N419A419PGcCCcG123All0
N419A419PGcCCcT123All0
N419A419SGccTcc2121AY.1180.001316
N419A419AgcCgcT2121B.1.1.3610.954545
N419A419AgcCgcA1220B.1.4270.000606
N419A419AgcCgcT820B.1.4270.000404
N419A419AgcCgcT1418AY.250.000084
N419A419AgcCgcA318AY.250.000018
N419A419AgcCgcG118AY.250.000006
N419A419AgcCgcT1617B.1.1770.000211
N419A419AgcCgcG117B.1.1770.000013
N419A419AgcCgcT1717B.1.177.120.002579
N419A419AgcCgcT1617P.10.000252
N419A419AgcCgcA117P.10.000016
N419A419AgcCgcT1616B.1.1600.000499
N419A419SGccTcc1515AY.250.00009
N419A419AgcCgcT1515AY.350.003496
N419A419AgcCgcT1414B.1.10.000254
N419A419AgcCgcT1313AY.1210.001759
N419A419AgcCgcT1313AY.4.20.000282
N419A419SGccTcc1313B.10.000119
N419A419AgcCgcT1313B.1.5260.000306
N419A419AgcCgcT1313C.320.302326
N419A419SGccTcc1212AY.430.000053
N419A419SGccTcc1111AY.350.002564
N419A419AgcCgcT1011AY.99.20.000922
N419A419AgcCgcA111AY.99.20.000092
N419A419VgCcgTc1111B.1.1.70.00001
N419A419AgcCgcT1111B.1.1110.012926
N419A419TGccAcc1111B.1.617.20.000041
N419A419AgcCgcT1010AY.1130.001424
N419A419AgcCgcT1010AY.200.000389
N419A419AgcCgcT1010AY.930.002731
N419A419AgcCgcT69AY.1020.000159
N419A419AgcCgcA39AY.1020.00008
N419A419AgcCgcA59AY.460.00052
N419A419AgcCgcT49AY.460.000416
N419A419SGccTcc99AY.9.20.000331
N419A419TGccAcc99B.10.000082
N419A419AgcCgcT99B.1.5250.001018
N419A419TGccAcc99B.1.5260.000212
N419A419SGccTcc88AY.340.000776
N419A419TGccAcc88AY.40.000012
N419A419SGccTcc88AY.440.000049
N419A419AgcCgcT88AY.610.000838
N419A419TGccAcc88B.1.20.00007
N419A419SGccTcc88B.1.5260.000188
N419A419AgcCgcA48B.1.5960.000349
N419A419AgcCgcT48B.1.5960.000349
N419A419AgcCgcT88B.1.6290.106667
N419A419AgcCgcT78P.1.10.002224
N419A419AgcCgcA18P.1.10.000318
N419A419AgcCgcT88P.1.120.003872
N419A419AgcCgcT77B.1.1.2220.001428
N419A419AgcCgcT77B.1.360.001021
N419A419AgcCgcT77Q.20.004294
N419A419AgcCgcT77Q.30.001015
N419A419AgcCgcT66AY.1200.000223
N419A419AgcCgcT56AY.290.000079
N419A419AgcCgcA16AY.290.000016
N419A419AgcCgcT56AY.30.00005
N419A419AgcCgcA16AY.30.00001
N419A419VgCcgTc66AY.40.000009
N419A419AgcCgcT66AY.470.000187
N419A419AgcCgcT36AY.50.000062
N419A419AgcCgcA36AY.50.000062
N419A419SGccTcc66AY.540.000572
N419A419AgcCgcT46AY.640.002381
N419A419AgcCgcG26AY.640.00119
N419A419AgcCgcT66AY.900.004107
N419A419PGccCcc66B.1.1.70.000005
N419A419AgcCgcT66B.1.4390.035503
N419A419delGCC---66B.1.617.20.000023
N419A419SGccTcc55AY.1210.000677
N419A419AgcCgcT55AY.260.000142
N419A419TGccAcc55AY.440.00003
N419A419SGccTcc55B.1.1.5190.000199
N419A419AgcCgcT55B.1.177.620.005959
N419A419AgcCgcT45B.1.177.810.000757
N419A419AgcCgcA15B.1.177.810.000189
N419A419SGccTcc55B.1.20.000044
N419A419AgcCgcT55B.1.351.20.001513
N419A419AgcCgcT55B.1.4290.000118
N419A419AgcCgcT55B.1.5280.238095
N419A419AgcCgcT44AY.1000.000184
N419A419AgcCgcT34AY.1170.000254
N419A419AgcCgcA14AY.1170.000085
N419A419TGccAcc44AY.250.000024
N419A419AgcCgcA24AY.270.000129
N419A419AgcCgcT24AY.270.000129
N419A419SGccTcc44AY.330.000267
N419A419AgcCgcT34AY.450.000365
N419A419AgcCgcA14AY.450.000122
N419A419SGccTcc44AY.690.000747
N419A419AgcCgcT44AY.880.003537
N419A419AgcCgcT44AY.98.10.000194
N419A419SGccTcc44B.1.10.000073
N419A419AgcCgcT44B.1.1.2140.000222
N419A419AgcCgcT44B.1.1.2940.005063
N419A419AgcCgcT44B.1.1.340.052632
N419A419delGCC---44B.1.1.70.000004
N419A419AgcCgcT44B.1.2430.000278
N419A419AgcCgcT44B.1.4800.00995
N419A419AgcCgcT44B.1.617.10.000516
N419A419AgcCgcT44B.1.6210.000354
N419A419SGccTcc44P.10.000063
N419A419AgcCgcT33A.10.000846
N419A419DgCcgAc33All0.000001
N419A419GgCcgGc23All0
N419A419GgCCgGG13All0
N419A419TGccAcc33AY.1030.000019
N419A419TGccAcc33AY.260.000085
N419A419SGccTcc33AY.30.00003
N419A419SGccTcc33AY.390.000074
N419A419AgcCgcT23AY.420.00008
N419A419AgcCgcA13AY.420.00004
N419A419AgcCgcT33AY.46.60.000217
N419A419AgcCgcT23AY.510.001818
N419A419AgcCgcA13AY.510.000909
N419A419AgcCgcT23AY.690.000373
N419A419AgcCgcA13AY.690.000187
N419A419AgcCgcT33AY.750.000168
N419A419delGCC---33B.10.000027
N419A419VgCcgTc33B.10.000027
N419A419SGccTcc33B.1.1.100.003344
N419A419SGccTcc33B.1.1.2630.004673
N419A419TGccAcc33B.1.110.30.002155
N419A419AgcCgcT33B.1.1390.002199
N419A419SGccTcc33B.1.1770.00004
N419A419AgcCgcT33B.1.177.860.00055
N419A419SGccTcc33B.1.2430.000209
N419A419AgcCgcT33B.1.258.170.000312
N419A419AgcCgcA23B.1.36.270.001527
N419A419AgcCgcT13B.1.36.270.000763
N419A419VgCcgTc33B.1.4290.000071
N419A419AgcCgcT23B.1.466.20.000782
N419A419AgcCgcG13B.1.466.20.000391
N419A419AgcCgcG33B.1.5770.002062
N419A419AgcCgcA33B.1.5950.000783
N419A419AgcCgcT33B.1.6280.001057
N419A419AgcCgcT33B.1.9.50.017045
N419A419AgcCgcT33C.160.003181
N419A419AgcCgcT23C.370.000232
N419A419AgcCgcA13C.370.000116
N419A419delGCC---33P.10.000047
N419A419AgcCgcT23P.1.140.000096
N419A419AgcCgcA13P.1.140.000048
N419A419AgcCgcT12A0.000387
N419A419AgcCgcA12A0.000387
N419A419AgcCgcT22AH.30.007605
N419A419del1gCcg-c22All0
N419A419AgcCgcT22AY.1040.003968
N419A419AgcCgcT22AY.1050.001286
N419A419AgcCgcT22AY.1080.002205
N419A419SGccTcc22AY.140.000176
N419A419AgcCgcT22AY.160.000759
N419A419AgcCgcT22AY.20.000712
N419A419AgcCgcT22AY.230.000139
N419A419delGCC---22AY.250.000012
N419A419TGccAcc22AY.3.10.000171
N419A419SGccTcc22AY.320.001065
N419A419AgcCgcT22AY.330.000134
N419A419AgcCgcA22AY.360.000296
N419A419AgcCgcT12AY.380.000499
N419A419AgcCgcA12AY.380.000499
N419A419delGCC---22AY.40.000003
N419A419SGccTcc22AY.4.20.000043
N419A419SGccTcc22AY.420.00008
N419A419VgCcgTc22AY.430.000009
N419A419delGCC---22AY.440.000012
N419A419AgcCgcT12AY.5.30.000337
N419A419AgcCgcA12AY.5.30.000337
N419A419SGccTcc22AY.620.000871
N419A419SGccTcc22AY.670.000929
N419A419SGccTcc22AY.730.001331
N419A419SGccTcc22AY.99.20.000184
N419A419TGccAcc22B0.000256
N419A419PGccCcc22B.10.000018
N419A419delGCC---22B.1.10.000036
N419A419AgcCgcG22B.1.1.1410.004024
N419A419AgcCgcT22B.1.1.2530.005013
N419A419SGccTcc22B.1.1.3110.000716
N419A419SGccTcc22B.1.1.3250.051282
N419A419AgcCgcT22B.1.1.330.000842
N419A419AgcCgcT22B.1.1.5190.000079
N419A419GgCcgGc12B.1.1.700.000341
N419A419GgCCgGG12B.1.1.700.000341
N419A419AgcCgcT22B.1.110.30.001437
N419A419VgCcgTc22B.1.120.016
N419A419AgcCgcA22B.1.1310.017544
N419A419SGccTcc22B.1.1600.000062
N419A419AgcCgcT22B.1.160.300.005952
N419A419AgcCgcT22B.1.177.820.000955
N419A419TGccAcc22B.1.2340.000264
N419A419AgcCgcT12B.1.2340.000132
N419A419AgcCgcA12B.1.2340.000132
N419A419SGccTcc22B.1.2400.000431
N419A419AgcCgcT22B.1.2580.000133
N419A419SGccTcc22B.1.3490.00143
N419A419AgcCgcT22B.1.36.290.001035
N419A419SGccTcc22B.1.36.290.001035
N419A419VgCcgTc22B.1.3870.08
N419A419SGccTcc22B.1.3990.003868
N419A419TGccAcc22B.1.4290.000047
N419A419PGccCcc22B.1.5260.000047
N419A419AgcCgcA22B.1.6050.011905
N419A419AgcCgcT22C.140.008658
N419A419PGccCcc22D.20.00015
N419A419AgcCgcG12P.20.000187
N419A419AgcCgcA12P.20.000187
N419A419AgcCgcT22Q.10.000253
N419A419AgcCgcT11A.2.5.10.004808
N419A419TGccAcc11A.2.5.20.001572
N419A419AgcCgcT11AD.20.000219
N419A419del2GCc--c11All0
N419A419HGCcCAc11All0
N419A419AgcCgcT11AN.10.02
N419A419TGccAcc11AS.10.009524
N419A419VgCcgTc11AU.10.001266
N419A419AgcCgcT11AY.10.000396
N419A419AgcCgcT11AY.1010.00049
N419A419TGccAcc11AY.1020.000027
N419A419SGccTcc11AY.1020.000027
N419A419AgcCgcT11AY.1060.000335
N419A419SGccTcc11AY.1060.000335
N419A419AgcCgcT11AY.1110.000183
N419A419AgcCgcT11AY.1140.000231
N419A419delGCC---11AY.1140.000231
N419A419AgcCgcT11AY.1160.000287
N419A419SGccTcc11AY.116.10.000311
N419A419AgcCgcT11AY.116.10.000311
N419A419AgcCgcT11AY.1180.000063
N419A419AgcCgcT11AY.1190.000035
N419A419SGccTcc11AY.1200.000037
N419A419AgcCgcT11AY.120.10.000321
N419A419delGCC---11AY.130.000161
N419A419TGccAcc11AY.140.000088
N419A419SGccTcc11AY.160.00038
N419A419SGccTcc11AY.200.000039
N419A419SGccTcc11AY.230.00007
N419A419AgcCgcT11AY.240.000431
N419A419TGccAcc11AY.240.000431
N419A419PGcCCcG11AY.250.000006
N419A419delGCC---11AY.260.000028
N419A419SGccTcc11AY.270.000065
N419A419TGccAcc11AY.280.00189
N419A419delGCC---11AY.290.000016
N419A419AgcCgcA11AY.29.10.000221
N419A419TGccAcc11AY.30.00001
N419A419SGccTcc11AY.3.10.000085
N419A419AgcCgcT11AY.300.000396
N419A419delGCC---11AY.360.000148
N419A419TGccAcc11AY.380.000499
N419A419SGccTcc11AY.380.000499
N419A419SGccTcc11AY.39.10.00004
N419A419AgcCgcT11AY.39.10.00004
N419A419AgcCgcA11AY.4.2.10.000149
N419A419SGccTcc11AY.4.2.10.000149
N419A419AgcCgcT11AY.4.50.000107
N419A419delGCC---11AY.430.000004
N419A419PGccCcc11AY.430.000004
N419A419PGccCcc11AY.440.000006
N419A419VgCcgTc11AY.440.000006
N419A419AgcCgcT11AY.46.20.000635
N419A419delGCC---11AY.470.000031
N419A419AgcCgcT11AY.480.000465
N419A419SGccTcc11AY.50.000021
N419A419TGccAcc11AY.5.40.000277
N419A419SGccTcc11AY.60.000041
N419A419delGCC---11AY.620.000436
N419A419SGccTcc11AY.650.000533
N419A419AgcCgcA11AY.70.000196
N419A419TGccAcc11AY.7.10.000113
N419A419SGccTcc11AY.740.000116
N419A419AgcCgcT11AY.740.000116
N419A419SGccTcc11AY.750.000056
N419A419VgCcgTc11AY.90.000068
N419A419delGCC---11AY.9.10.000084
N419A419AgcCgcA11AY.910.00073
N419A419SGccTcc11AY.920.000287
N419A419SGccTcc11AY.98.10.000048
N419A419delGCC---11AY.990.001049
N419A419AgcCgcT11B0.000128
N419A419GgCcgGc11B.10.000009
N419A419DgCcgAc11B.10.000009
N419A419PGccCcc11B.1.10.000018
N419A419TGccAcc11B.1.10.000018
N419A419AgcCgcT11B.1.1.1440.028571
N419A419AgcCgcT11B.1.1.1640.005155
N419A419AgcCgcA11B.1.1.2020.076923
N419A419AgcCgcT11B.1.1.2160.00089
N419A419SGccTcc11B.1.1.2200.001859
N419A419TGccAcc11B.1.1.270.00565
N419A419AgcCgcT11B.1.1.2730.006757
N419A419AgcCgcT11B.1.1.2770.000759
N419A419SGccTcc11B.1.1.2850.006536
N419A419SGccTcc11B.1.1.2910.000742
N419A419AgcCgcT11B.1.1.3060.000438
N419A419AgcCgcT11B.1.1.3180.000302
N419A419AgcCgcT11B.1.1.3260.001761
N419A419delGCC---11B.1.1.370.000193
N419A419AgcCgcT11B.1.1.370.000193
N419A419VgCcgTc11B.1.1.390.00051
N419A419AgcCgcT11B.1.1.4130.006897
N419A419AgcCgcT11B.1.1.4330.001425
N419A419AgcCgcT11B.1.1.4850.016667
N419A419AgcCgcA11B.1.1.500.000679
N419A419DgCcgAc11B.1.1.5190.00004
N419A419AgcCgcT11B.1.1.5230.001563
N419A419AgcCgcT11B.1.1.630.000386
N419A419AgcCgcG11B.1.1.700.000341
N419A419TGccAcc11B.1.1.700.000341
N419A419VgCcgTc11B.1.160.170.001701
N419A419PGccCcc11B.1.160.200.008929
N419A419PGccCcc11B.1.1640.014925
N419A419TGccAcc11B.1.1770.000013
N419A419VgCcgTc11B.1.1770.000013
N419A419PGccCcc11B.1.1770.000013
N419A419SGccTcc11B.1.177.230.003236
N419A419AgcCgcT11B.1.177.500.004695
N419A419AgcCgcT11B.1.177.560.000668
N419A419AgcCgcT11B.1.177.630.002703
N419A419AgcCgcT11B.1.177.730.000566
N419A419delGCC---11B.1.177.830.001481
N419A419AgcCgcT11B.1.177.90.001332
N419A419VgCcgTc11B.1.20.000009
N419A419delGCC---11B.1.20.000009
N419A419PGccCcc11B.1.20.000009
N419A419VgCcgTc11B.1.2210.000071
N419A419AgcCgcT11B.1.2220.001692
N419A419AgcCgcA11B.1.2350.002519
N419A419TGccAcc11B.1.2430.00007
N419A419delGCC---11B.1.2580.000067
N419A419delGCC---11B.1.258.160.001637
N419A419TGccAcc11B.1.258.170.000104
N419A419SGccTcc11B.1.258.170.000104
N419A419SGccTcc11B.1.3330.010526
N419A419AgcCgcT11B.1.3490.000715
N419A419SGccTcc11B.1.3510.00003
N419A419VgCcgTc11B.1.3510.00003
N419A419AgcCgcT11B.1.3510.00003
N419A419HGCcCAc11B.1.3510.00003
N419A419AgcCgcT11B.1.36.10.00114
N419A419PGccCcc11B.1.36.10.00114
N419A419AgcCgcT11B.1.36.360.000602
N419A419SGccTcc11B.1.3710.001122
N419A419TGccAcc11B.1.3910.001127
N419A419AgcCgcT11B.1.3990.001934
N419A419delGCC---11B.1.4150.014286
N419A419AgcCgcT11B.1.4260.001009
N419A419delGCC---11B.1.4270.00005
N419A419SGccTcc11B.1.4290.000024
N419A419delGCC---11B.1.438.10.000107
N419A419AgcCgcT11B.1.438.10.000107
N419A419TGccAcc11B.1.438.10.000107
N419A419DgCcgAc11B.1.4530.003236
N419A419PGcCCcT11B.1.4970.000315
N419A419AgcCgcT11B.1.499.10.111111
N419A419AgcCgcA11B.1.5090.000866
N419A419del1gCcg-c11B.1.5160.001957
N419A419AgcCgcT11B.1.5170.000427
N419A419AgcCgcT11B.1.5270.003704
N419A419AgcCgcT11B.1.5610.000397
N419A419AgcCgcT11B.1.5640.000426
N419A419VgCcgTc11B.1.5950.000261
N419A419AgcCgcT11B.1.595.40.007299
N419A419delGCC---11B.1.5960.000087
N419A419PGccCcc11B.1.5960.000087
N419A419TGccAcc11B.1.5960.000087
N419A419SGccTcc11B.1.6090.000479
N419A419AgcCgcT11B.1.6090.000479
N419A419delGCC---11B.1.617.10.000129
N419A419VgCCgTT11B.1.617.10.000129
N419A419del1gCcg-c11B.1.617.20.000004
N419A419del2GCc--c11B.1.617.20.000004
N419A419VgCcgTc11B.1.617.20.000004
N419A419SGccTcc11B.1.617.30.002985
N419A419AgcCgcT11B.1.6190.000871
N419A419SGccTcc11B.1.6210.000089
N419A419SGccTcc11B.1.6370.000073
N419A419TGccAcc11B.1.930.000934
N419A419AgcCgcT11B.230.002924
N419A419AgcCgcT11B.60.00091
N419A419AgcCgcT11C.360.000911
N419A419SGccTcc11D.20.000075
N419A419SGccTcc11N.40.004255
N419A419TGccAcc11P.10.000016
N419A419TGccAcc11P.1.120.000484
N419A419AgcCgcT11P.1.130.000898
N419A419SGccTcc11P.1.140.000048
N419A419TGccAcc11P.1.140.000048
N419A419SGccTcc11P.1.150.000232
N419A419SGccTcc11Q.10.000126
N419A419TGccAcc11Q.30.000145
N419A419AgcCgcT11Q.40.000455