CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 418

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	418	Q418H		nonsyn	caG	caT	17987	17920	0.996275	29525-29527
N	418	Q418H		nonsyn	caG	caC	17987	67	0.00372491	29525-29527
N	418	Q418Q		syn	caG	caA	717	717	1	29525-29527
N	418	Q418L		nonsyn	cAg	cTg	581	578	0.994837	29525-29527
N	418	Q418L		nonsyn	cAG	cTA	581	2	0.00344234	29525-29527
N	418	Q418L		nonsyn	CAg	TTg	581	1	0.00172117	29525-29527
N	418	Q418R		nonsyn	cAg	cGg	358	358	1	29525-29527
N	418	Q418X		nonsyn	Cag	Tag	264	263	0.996212	29525-29527
N	418	Q418X		nonsyn	CaG	TaA	264	1	0.00378788	29525-29527
N	418	Q418del		del	CAG	---	41	41	1	29525-29527
N	418	Q418P		nonsyn	cAg	cCg	28	28	1	29525-29527
N	418	Q418K		nonsyn	Cag	Aag	23	23	1	29525-29527
N	418	Q418E		nonsyn	Cag	Gag	21	21	1	29525-29527
N	418	Q418del1		del	Cag	-ag	11	6	0.545455	29525-29527
N	418	Q418del1		del	caG	ca-	11	5	0.454545	29525-29527
N	418	Q418Y		nonsyn	CaG	TaT	6	5	0.833333	29525-29527
N	418	Q418Y		nonsyn	CaG	TaC	6	1	0.166667	29525-29527
N	418	Q418D		nonsyn	CaG	GaC	4	4	1	29525-29527
N	418	Q418del2		del	CAG	--A	2	1	0.5	29525-29527
N	418	Q418del2		del	cAG	c--	2	1	0.5	29525-29527
N	418	Q418N		nonsyn	CaG	AaT	1	1	1	29525-29527

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	418	Q418H	caG	caT	17920	17987	All	0.003427
N	418	Q418H	caG	caC	67	17987	All	0.000013
N	418	Q418H	caG	caT	11103	11103	R.1	0.99937
N	418	Q418H	caG	caT	2130	2131	B.1.1.519	0.084584
N	418	Q418H	caG	caC	1	2131	B.1.1.519	0.00004
N	418	Q418Q	caG	caA	717	717	All	0.000137
N	418	Q418H	caG	caT	609	610	B.1.617.2	0.002293
N	418	Q418H	caG	caC	1	610	B.1.617.2	0.000004
N	418	Q418L	cAg	cTg	578	581	All	0.000111
N	418	Q418L	cAG	cTA	2	581	All	0
N	418	Q418L	CAg	TTg	1	581	All	0
N	418	Q418H	caG	caT	416	416	AY.75	0.023305
N	418	Q418R	cAg	cGg	358	358	All	0.000068
N	418	Q418H	caG	caT	320	321	B.1.2	0.002818
N	418	Q418H	caG	caC	1	321	B.1.2	0.000009
N	418	Q418H	caG	caT	314	314	AY.102	0.008325
N	418	Q418H	caG	caT	293	294	B.1.1.7	0.000262
N	418	Q418H	caG	caC	1	294	B.1.1.7	0.000001
N	418	Q418H	caG	caT	287	288	B.1.1	0.005206
N	418	Q418H	caG	caC	1	288	B.1.1	0.000018
N	418	Q418H	caG	caT	285	285	AY.98.1	0.013803
N	418	Q418H	caG	caT	280	280	B.1.1.214	0.015528
N	418	Q418X	Cag	Tag	263	264	All	0.00005
N	418	Q418X	CaG	TaA	1	264	All	0
N	418	Q418R	cAg	cGg	225	225	B.1.1.7	0.000201
N	418	Q418H	caG	caT	182	183	B.1.351	0.00541
N	418	Q418H	caG	caC	1	183	B.1.351	0.00003
N	418	Q418H	caG	caT	159	159	AY.103	0.000987
N	418	Q418H	caG	caT	139	140	B.1.177	0.00183
N	418	Q418H	caG	caC	1	140	B.1.177	0.000013
N	418	Q418H	caG	caT	127	134	AY.4	0.000198
N	418	Q418H	caG	caC	7	134	AY.4	0.000011
N	418	Q418H	caG	caT	116	118	B.1	0.001063
N	418	Q418H	caG	caC	2	118	B.1	0.000018
N	418	Q418L	cAg	cTg	118	118	B.1.1.7	0.000106
N	418	Q418L	cAg	cTg	107	107	B.1.617.2	0.000403
N	418	Q418H	caG	caT	103	103	B.1.1.220	0.19145
N	418	Q418Q	caG	caA	97	97	AY.26	0.002746
N	418	Q418Q	caG	caA	92	92	B.1.1.7	0.000082
N	418	Q418H	caG	caT	79	79	AY.39	0.001952
N	418	Q418H	caG	caT	73	75	AY.43	0.000323
N	418	Q418H	caG	caC	2	75	AY.43	0.000009
N	418	Q418L	cAg	cTg	61	61	AY.4	0.000095
N	418	Q418L	cAg	cTg	59	59	AY.75	0.003305
N	418	Q418Q	caG	caA	59	59	B.1.351	0.001754
N	418	Q418H	caG	caT	43	43	B.1.575	0.013046
N	418	Q418Q	caG	caA	42	42	B.1.617.2	0.000158
N	418	Q418del	CAG	---	41	41	All	0.000008
N	418	Q418Q	caG	caA	39	39	AY.4	0.000061
N	418	Q418L	cAg	cTg	39	39	B.1.351.2	0.0118
N	418	Q418X	Cag	Tag	36	36	B.1.1.7	0.000032
N	418	Q418H	caG	caT	33	34	AY.44	0.000201
N	418	Q418H	caG	caC	1	34	AY.44	0.000006
N	418	Q418H	caG	caT	34	34	B.1.1.525	0.185792
N	418	Q418Q	caG	caA	34	34	B.1.177.12	0.005158
N	418	Q418H	caG	caT	31	31	AY.3	0.000308
N	418	Q418X	Cag	Tag	31	31	AY.4	0.000048
N	418	Q418H	caG	caC	17	31	AY.4.2	0.000369
N	418	Q418H	caG	caT	14	31	AY.4.2	0.000304
N	418	Q418H	caG	caT	30	30	B.1.243	0.002088
N	418	Q418Q	caG	caA	29	29	B.1.594	0.90625
N	418	Q418H	caG	caT	29	29	B.1.625	0.068235
N	418	Q418H	caG	caT	29	29	P.1	0.000457
N	418	Q418P	cAg	cCg	28	28	All	0.000005
N	418	Q418L	cAg	cTg	28	28	B.1.1.289	0.058333
N	418	Q418Q	caG	caA	28	28	P.1	0.000441
N	418	Q418H	caG	caT	24	27	AY.25	0.000144
N	418	Q418H	caG	caC	3	27	AY.25	0.000018
N	418	Q418H	caG	caT	26	27	AY.5	0.000537
N	418	Q418H	caG	caC	1	27	AY.5	0.000021
N	418	Q418Q	caG	caA	25	25	B.1.1.519	0.000993
N	418	Q418R	cAg	cGg	25	25	B.1.617.2	0.000094
N	418	Q418Q	caG	caA	24	24	AY.103	0.000149
N	418	Q418L	cAg	cTg	24	24	AY.43	0.000106
N	418	Q418K	Cag	Aag	23	23	All	0.000004
N	418	Q418H	caG	caT	23	23	AY.120	0.000855
N	418	Q418H	caG	caT	22	22	AY.33	0.001469
N	418	Q418R	cAg	cGg	22	22	B.1.177	0.00029
N	418	Q418E	Cag	Gag	21	21	All	0.000004
N	418	Q418X	Cag	Tag	20	20	AY.43	0.000089
N	418	Q418Q	caG	caA	19	19	AY.25	0.000114
N	418	Q418Q	caG	caA	19	19	P.1.4	0.018555
N	418	Q418H	caG	caT	18	18	P.1.17.1	0.015748
N	418	Q418H	caG	caT	17	17	AY.119	0.0006
N	418	Q418H	caG	caT	17	17	AY.20	0.000661
N	418	Q418H	caG	caT	17	17	AY.9.2	0.000624
N	418	Q418H	caG	caT	17	17	B.1.1.317	0.006999
N	418	Q418L	cAg	cTg	17	17	B.1.177	0.000224
N	418	Q418Q	caG	caA	16	16	AY.23	0.001116
N	418	Q418H	caG	caT	16	16	B.1.596	0.001394
N	418	Q418H	caG	caT	15	15	AY.73	0.00998
N	418	Q418Q	caG	caA	15	15	B.1.177	0.000198
N	418	Q418H	caG	caT	14	14	AY.98	0.001106
N	418	Q418Q	caG	caA	14	14	B	0.001789
N	418	Q418H	caG	caT	13	13	AY.7.1	0.001465
N	418	Q418H	caG	caT	13	13	B.1.1.280	0.040123
N	418	Q418H	caG	caT	9	13	B.1.526	0.000212
N	418	Q418H	caG	caC	4	13	B.1.526	0.000094
N	418	Q418X	Cag	Tag	13	13	B.1.617.2	0.000049
N	418	Q418L	cAg	cTg	12	12	AY.103	0.000075
N	418	Q418X	Cag	Tag	12	12	AY.3	0.000119
N	418	Q418H	caG	caT	12	12	B.1.1.10	0.013378
N	418	Q418del1	Cag	-ag	6	11	All	0.000001
N	418	Q418del1	caG	ca-	5	11	All	0.000001
N	418	Q418L	cAg	cTg	11	11	AY.39	0.000272
N	418	Q418R	cAg	cGg	11	11	AY.4	0.000017
N	418	Q418L	cAg	cTg	11	11	AY.44	0.000067
N	418	Q418X	Cag	Tag	11	11	B.1	0.000101
N	418	Q418H	caG	caT	11	11	B.1.416	0.013959
N	418	Q418H	caG	caT	10	10	AY.29	0.000158
N	418	Q418H	caG	caT	10	10	AY.34	0.00097
N	418	Q418Q	caG	caA	10	10	B.1.160	0.000312
N	418	Q418H	caG	caT	9	9	AY.117	0.000761
N	418	Q418H	caG	caT	9	9	AY.39.1	0.000357
N	418	Q418H	caG	caT	9	9	AY.47	0.00028
N	418	Q418Q	caG	caA	9	9	B.1	0.000082
N	418	Q418X	Cag	Tag	9	9	B.1.177	0.000119
N	418	Q418Q	caG	caA	9	9	B.1.2	0.000079
N	418	Q418H	caG	caT	9	9	B.1.258.3	0.015075
N	418	Q418X	Cag	Tag	9	9	D.2	0.000675
N	418	Q418H	caG	caC	5	8	AY.45	0.000608
N	418	Q418H	caG	caT	3	8	AY.45	0.000365
N	418	Q418H	caG	caT	7	8	AY.46	0.000729
N	418	Q418H	caG	caC	1	8	AY.46	0.000104
N	418	Q418H	caG	caT	8	8	AY.84	0.0035
N	418	Q418H	caG	caT	7	8	B.1.160	0.000218
N	418	Q418H	caG	caC	1	8	B.1.160	0.000031
N	418	Q418H	caG	caT	6	8	B.1.429	0.000141
N	418	Q418H	caG	caC	2	8	B.1.429	0.000047
N	418	Q418H	caG	caT	8	8	P.1.14	0.000382
N	418	Q418H	caG	caT	8	8	P.1.17	0.001294
N	418	Q418H	caG	caT	7	7	AY.100	0.000322
N	418	Q418Q	caG	caA	7	7	AY.102	0.000186
N	418	Q418X	Cag	Tag	7	7	AY.103	0.000043
N	418	Q418L	cAg	cTg	7	7	AY.6	0.000288
N	418	Q418Q	caG	caA	7	7	B.1.1	0.000127
N	418	Q418H	caG	caT	7	7	B.1.1.222	0.001428
N	418	Q418K	Cag	Aag	7	7	B.1.1.7	0.000006
N	418	Q418H	caG	caT	7	7	B.1.177.77	0.005084
N	418	Q418H	caG	caT	7	7	B.1.177.85	0.038043
N	418	Q418Q	caG	caA	7	7	B.1.258	0.000466
N	418	Q418Y	CaG	TaT	5	6	All	0.000001
N	418	Q418Y	CaG	TaC	1	6	All	0
N	418	Q418H	caG	caT	6	6	AY.26	0.00017
N	418	Q418X	Cag	Tag	6	6	AY.33	0.000401
N	418	Q418X	Cag	Tag	6	6	AY.4.2	0.00013
N	418	Q418L	cAg	cTg	6	6	AY.46.6	0.000433
N	418	Q418R	cAg	cGg	6	6	AY.61	0.000629
N	418	Q418del	CAG	---	6	6	B.1.1.7	0.000005
N	418	Q418X	Cag	Tag	6	6	B.1.2	0.000053
N	418	Q418R	cAg	cGg	6	6	B.1.561	0.002382
N	418	Q418X	Cag	Tag	6	6	P.1	0.000095
N	418	Q418Q	caG	caA	5	5	AY.100	0.00023
N	418	Q418Q	caG	caA	5	5	AY.3.1	0.000426
N	418	Q418Q	caG	caA	5	5	AY.39	0.000124
N	418	Q418Q	caG	caA	5	5	AY.43	0.000022
N	418	Q418X	Cag	Tag	5	5	AY.44	0.00003
N	418	Q418L	cAg	cTg	5	5	B.1	0.000046
N	418	Q418R	cAg	cGg	5	5	B.1.1	0.000091
N	418	Q418H	caG	caT	5	5	B.1.1.311	0.001791
N	418	Q418E	Cag	Gag	5	5	B.1.1.7	0.000004
N	418	Q418H	caG	caT	5	5	B.1.177.12	0.000758
N	418	Q418R	cAg	cGg	5	5	B.1.177.44	0.002595
N	418	Q418L	cAg	cTg	5	5	B.1.2	0.000044
N	418	Q418R	cAg	cGg	5	5	B.1.221	0.000355
N	418	Q418Q	caG	caA	5	5	B.1.601	0.151515
N	418	Q418del	CAG	---	5	5	B.1.617.2	0.000019
N	418	Q418Q	caG	caA	5	5	B.1.628	0.001762
N	418	Q418L	cAg	cTg	5	5	B.1.637	0.000365
N	418	Q418X	Cag	Tag	5	5	C.36.3	0.002836
N	418	Q418H	caG	caT	5	5	C.37	0.00058
N	418	Q418D	CaG	GaC	4	4	All	0.000001
N	418	Q418X	Cag	Tag	4	4	AY.102	0.000106
N	418	Q418Q	caG	caA	4	4	AY.113	0.00057
N	418	Q418X	Cag	Tag	4	4	AY.25	0.000024
N	418	Q418Q	caG	caA	4	4	AY.3	0.00004
N	418	Q418R	cAg	cGg	4	4	AY.39	0.000099
N	418	Q418H	caG	caT	4	4	AY.4.4	0.001637
N	418	Q418H	caG	caT	4	4	AY.42	0.000161
N	418	Q418Q	caG	caA	4	4	AY.44	0.000024
N	418	Q418R	cAg	cGg	4	4	AY.54	0.000381
N	418	Q418H	caG	caT	3	4	AY.6	0.000123
N	418	Q418H	caG	caC	1	4	AY.6	0.000041
N	418	Q418H	caG	caT	4	4	AY.61	0.000419
N	418	Q418H	caG	caT	4	4	AY.99.2	0.000369
N	418	Q418H	caG	caT	4	4	B.1.1.216	0.003562
N	418	Q418X	Cag	Tag	4	4	B.1.160	0.000125
N	418	Q418L	cAg	cTg	4	4	B.1.160	0.000125
N	418	Q418X	Cag	Tag	4	4	B.1.177.44	0.002076
N	418	Q418R	cAg	cGg	4	4	B.1.36	0.000584
N	418	Q418L	cAg	cTg	4	4	B.1.621	0.000354
N	418	Q418Q	caG	caA	4	4	B.1.637	0.000292
N	418	Q418L	cAg	cTg	4	4	P.1	0.000063
N	418	Q418H	caG	caT	3	3	A.2.5	0.001497
N	418	Q418L	cAg	cTg	3	3	AY.100	0.000138
N	418	Q418H	caG	caT	3	3	AY.106	0.001005
N	418	Q418L	cAg	cTg	3	3	AY.20	0.000117
N	418	Q418H	caG	caT	3	3	AY.23	0.000209
N	418	Q418R	cAg	cGg	3	3	AY.3	0.00003
N	418	Q418L	cAg	cTg	2	3	AY.3	0.00002
N	418	Q418L	CAg	TTg	1	3	AY.3	0.00001
N	418	Q418L	cAg	cTg	3	3	AY.30	0.001187
N	418	Q418X	Cag	Tag	3	3	AY.36	0.000445
N	418	Q418P	cAg	cCg	3	3	AY.39.1	0.000119
N	418	Q418P	cAg	cCg	3	3	AY.4	0.000005
N	418	Q418E	Cag	Gag	3	3	AY.44	0.000018
N	418	Q418K	Cag	Aag	3	3	AY.5	0.000062
N	418	Q418Q	caG	caA	3	3	AY.5	0.000062
N	418	Q418Q	caG	caA	3	3	AY.61	0.000314
N	418	Q418H	caG	caT	3	3	AY.62	0.001307
N	418	Q418X	Cag	Tag	3	3	AY.70	0.000626
N	418	Q418H	caG	caT	3	3	AY.75.1	0.000541
N	418	Q418L	cAg	cTg	3	3	AY.9.2	0.00011
N	418	Q418Q	caG	caA	3	3	AY.98.1	0.000145
N	418	Q418R	cAg	cGg	3	3	B.1	0.000027
N	418	Q418del	CAG	---	3	3	B.1	0.000027
N	418	Q418X	Cag	Tag	3	3	B.1.1	0.000054
N	418	Q418H	caG	caT	3	3	B.1.1.161	0.010601
N	418	Q418H	caG	caT	3	3	B.1.1.318	0.000905
N	418	Q418L	cAg	cTg	3	3	B.1.1.33	0.001263
N	418	Q418H	caG	caT	3	3	B.1.1.37	0.000579
N	418	Q418H	caG	caT	3	3	B.1.1.39	0.001529
N	418	Q418H	caG	caT	3	3	B.1.1.521	0.016043
N	418	Q418P	cAg	cCg	3	3	B.1.1.7	0.000003
N	418	Q418H	caG	caT	3	3	B.1.1.83	0.00813
N	418	Q418Y	CaG	TaT	3	3	B.1.177	0.00004
N	418	Q418Q	caG	caA	3	3	B.1.177.7	0.000495
N	418	Q418H	caG	caT	3	3	B.1.351.2	0.000908
N	418	Q418H	caG	caT	3	3	B.1.351.3	0.002629
N	418	Q418Q	caG	caA	3	3	B.1.36.7	0.012
N	418	Q418Q	caG	caA	3	3	B.1.446	0.06
N	418	Q418H	caG	caT	3	3	B.1.525	0.000339
N	418	Q418H	caG	caT	2	3	B.1.577	0.001375
N	418	Q418H	caG	caC	1	3	B.1.577	0.000687
N	418	Q418H	caG	caT	3	3	B.1.621	0.000266
N	418	Q418H	caG	caT	3	3	B.1.621.1	0.001517
N	418	Q418H	caG	caT	3	3	B.1.637	0.000219
N	418	Q418H	caG	caT	3	3	B.1.9.1	0.096774
N	418	Q418X	Cag	Tag	3	3	B.40	0.001093
N	418	Q418del	CAG	---	3	3	P.1	0.000047
N	418	Q418P	cAg	cCg	3	3	P.1	0.000047
N	418	Q418Q	caG	caA	3	3	P.1.1	0.000953
N	418	Q418H	caG	caT	3	3	P.1.15	0.000697
N	418	Q418H	caG	caT	2	2	A.23.1	0.001408
N	418	Q418del2	CAG	--A	1	2	All	0
N	418	Q418del2	cAG	c--	1	2	All	0
N	418	Q418R	cAg	cGg	2	2	AY.101	0.000981
N	418	Q418L	cAg	cTg	2	2	AY.102	0.000053
N	418	Q418R	cAg	cGg	2	2	AY.103	0.000012
N	418	Q418H	caG	caT	2	2	AY.113	0.000285
N	418	Q418P	cAg	cCg	2	2	AY.117	0.000169
N	418	Q418Q	caG	caA	2	2	AY.119	0.000071
N	418	Q418H	caG	caT	2	2	AY.14	0.000176
N	418	Q418Q	caG	caA	2	2	AY.20	0.000078
N	418	Q418R	cAg	cGg	2	2	AY.23	0.000139
N	418	Q418L	cAg	cTg	2	2	AY.25	0.000012
N	418	Q418del	CAG	---	2	2	AY.25	0.000012
N	418	Q418X	Cag	Tag	2	2	AY.26	0.000057
N	418	Q418X	Cag	Tag	2	2	AY.27	0.000129
N	418	Q418E	Cag	Gag	2	2	AY.29	0.000032
N	418	Q418H	caG	caT	2	2	AY.32	0.001065
N	418	Q418Q	caG	caA	2	2	AY.33	0.000134
N	418	Q418Q	caG	caA	2	2	AY.36	0.000296
N	418	Q418H	caG	caT	2	2	AY.37	0.000632
N	418	Q418del	CAG	---	2	2	AY.4	0.000003
N	418	Q418K	Cag	Aag	2	2	AY.4	0.000003
N	418	Q418P	cAg	cCg	2	2	AY.4.2	0.000043
N	418	Q418X	Cag	Tag	2	2	AY.4.3	0.001684
N	418	Q418X	Cag	Tag	2	2	AY.4.5	0.000215
N	418	Q418del	CAG	---	2	2	AY.44	0.000012
N	418	Q418H	caG	caT	2	2	AY.46.1	0.002053
N	418	Q418L	cAg	cTg	2	2	AY.5	0.000041
N	418	Q418H	caG	caT	2	2	AY.5.3	0.000675
N	418	Q418H	caG	caT	2	2	AY.5.4	0.000553
N	418	Q418H	caG	caT	2	2	AY.54	0.000191
N	418	Q418H	caG	caT	2	2	AY.68	0.000547
N	418	Q418K	Cag	Aag	2	2	AY.69	0.000373
N	418	Q418H	caG	caT	2	2	AY.9.1	0.000167
N	418	Q418X	Cag	Tag	2	2	AY.9.2	0.000073
N	418	Q418H	caG	caT	2	2	AY.92	0.000575
N	418	Q418P	cAg	cCg	2	2	AY.98.1	0.000097
N	418	Q418K	Cag	Aag	2	2	B.1	0.000018
N	418	Q418del	CAG	---	2	2	B.1.1	0.000036
N	418	Q418L	cAg	cTg	2	2	B.1.1	0.000036
N	418	Q418H	caG	caT	2	2	B.1.1.1	0.000653
N	418	Q418H	caG	caT	2	2	B.1.1.198	0.002937
N	418	Q418H	caG	caT	2	2	B.1.1.25	0.001137
N	418	Q418H	caG	caT	2	2	B.1.1.28	0.000622
N	418	Q418H	caG	caT	2	2	B.1.1.291	0.001485
N	418	Q418H	caG	caT	2	2	B.1.1.305	0.007722
N	418	Q418H	caG	caT	2	2	B.1.1.306	0.000877
N	418	Q418Q	caG	caA	2	2	B.1.1.37	0.000386
N	418	Q418H	caG	caT	2	2	B.1.1.51	0.003436
N	418	Q418H	caG	caT	2	2	B.1.1.523	0.003125
N	418	Q418H	caG	caT	2	2	B.1.1.70	0.000682
N	418	Q418H	caG	caC	2	2	B.1.177.32	0.002699
N	418	Q418del1	Cag	-ag	2	2	B.1.2	0.000018
N	418	Q418K	Cag	Aag	2	2	B.1.2	0.000018
N	418	Q418R	cAg	cGg	2	2	B.1.2	0.000018
N	418	Q418Q	caG	caA	2	2	B.1.234	0.000264
N	418	Q418Q	caG	caA	2	2	B.1.236	0.004107
N	418	Q418H	caG	caT	2	2	B.1.258	0.000133
N	418	Q418R	cAg	cGg	2	2	B.1.258	0.000133
N	418	Q418H	caG	caT	2	2	B.1.265	0.002541
N	418	Q418H	caG	caC	2	2	B.1.311	0.000549
N	418	Q418L	cAg	cTg	2	2	B.1.351	0.000059
N	418	Q418L	cAg	cTg	2	2	B.1.36	0.000292
N	418	Q418H	caG	caT	2	2	B.1.36.8	0.002
N	418	Q418H	caG	caT	2	2	B.1.396	0.001411
N	418	Q418X	Cag	Tag	2	2	B.1.427	0.000101
N	418	Q418Q	caG	caA	2	2	B.1.427	0.000101
N	418	Q418X	Cag	Tag	2	2	B.1.429	0.000047
N	418	Q418H	caG	caT	2	2	B.1.503	0.004975
N	418	Q418H	caG	caT	2	2	B.1.575.1	0.004878
N	418	Q418H	caG	caT	2	2	B.1.595	0.000522
N	418	Q418H	caG	caT	2	2	B.1.617.1	0.000258
N	418	Q418E	Cag	Gag	2	2	B.1.617.2	0.000008
N	418	Q418P	cAg	cCg	2	2	B.1.617.2	0.000008
N	418	Q418H	caG	caT	2	2	C.16	0.002121
N	418	Q418Q	caG	caA	2	2	C.37	0.000232
N	418	Q418H	caG	caT	2	2	L.3	0.007092
N	418	Q418Q	caG	caA	2	2	P.1.10	0.000539
N	418	Q418H	caG	caT	2	2	P.2	0.000373
N	418	Q418H	caG	caC	2	2	P.3	0.00319
N	418	Q418H	caG	caT	2	2	Q.3	0.00029
N	418	Q418H	caG	caT	1	1	A.2.4	0.003367
N	418	Q418L	cAg	cTg	1	1	A.2.5	0.000499
N	418	Q418H	caG	caT	1	1	AE.8	0.000489
N	418	Q418N	CaG	AaT	1	1	All	0
N	418	Q418H	caG	caT	1	1	AM.4	0.003571
N	418	Q418H	caG	caT	1	1	AU.3	0.00211
N	418	Q418X	Cag	Tag	1	1	AY.100	0.000046
N	418	Q418D	CaG	GaC	1	1	AY.103	0.000006
N	418	Q418H	caG	caT	1	1	AY.104	0.001984
N	418	Q418E	Cag	Gag	1	1	AY.106	0.000335
N	418	Q418R	cAg	cGg	1	1	AY.106	0.000335
N	418	Q418L	cAg	cTg	1	1	AY.109	0.00074
N	418	Q418X	Cag	Tag	1	1	AY.113	0.000142
N	418	Q418P	cAg	cCg	1	1	AY.113	0.000142
N	418	Q418del	CAG	---	1	1	AY.114	0.000231
N	418	Q418R	cAg	cGg	1	1	AY.116	0.000287
N	418	Q418H	caG	caT	1	1	AY.116	0.000287
N	418	Q418Q	caG	caA	1	1	AY.117	0.000085
N	418	Q418H	caG	caT	1	1	AY.118	0.000063
N	418	Q418L	cAg	cTg	1	1	AY.120	0.000037
N	418	Q418Q	caG	caA	1	1	AY.120	0.000037
N	418	Q418X	Cag	Tag	1	1	AY.120	0.000037
N	418	Q418Q	caG	caA	1	1	AY.121	0.000135
N	418	Q418P	cAg	cCg	1	1	AY.121	0.000135
N	418	Q418del	CAG	---	1	1	AY.13	0.000161
N	418	Q418Q	caG	caA	1	1	AY.14	0.000088
N	418	Q418H	caG	caT	1	1	AY.15	0.002222
N	418	Q418H	caG	caT	1	1	AY.19	0.00114
N	418	Q418P	cAg	cCg	1	1	AY.20	0.000039
N	418	Q418X	Cag	Tag	1	1	AY.20	0.000039
N	418	Q418P	cAg	cCg	1	1	AY.21	0.001898
N	418	Q418L	cAg	cTg	1	1	AY.23	0.00007
N	418	Q418K	Cag	Aag	1	1	AY.25	0.000006
N	418	Q418Y	CaG	TaC	1	1	AY.25	0.000006
N	418	Q418R	cAg	cGg	1	1	AY.25	0.000006
N	418	Q418R	cAg	cGg	1	1	AY.26	0.000028
N	418	Q418L	cAg	cTg	1	1	AY.26	0.000028
N	418	Q418del	CAG	---	1	1	AY.26	0.000028
N	418	Q418del1	caG	ca-	1	1	AY.29	0.000016
N	418	Q418X	Cag	Tag	1	1	AY.29	0.000016
N	418	Q418Q	caG	caA	1	1	AY.29	0.000016
N	418	Q418N	CaG	AaT	1	1	AY.3	0.00001
N	418	Q418H	caG	caT	1	1	AY.3.1	0.000085
N	418	Q418H	caG	caT	1	1	AY.30	0.000396
N	418	Q418L	cAg	cTg	1	1	AY.33	0.000067
N	418	Q418Q	caG	caA	1	1	AY.34	0.000097
N	418	Q418H	caG	caT	1	1	AY.34.1	0.00051
N	418	Q418R	cAg	cGg	1	1	AY.35	0.000233
N	418	Q418H	caG	caT	1	1	AY.36	0.000148
N	418	Q418del2	cAG	c--	1	1	AY.36	0.000148
N	418	Q418K	Cag	Aag	1	1	AY.39	0.000025
N	418	Q418E	Cag	Gag	1	1	AY.4	0.000002
N	418	Q418H	caG	caT	1	1	AY.4.3	0.000842
N	418	Q418X	Cag	Tag	1	1	AY.4.4	0.000409
N	418	Q418Q	caG	caA	1	1	AY.4.5	0.000107
N	418	Q418P	cAg	cCg	1	1	AY.41	0.000294
N	418	Q418H	caG	caT	1	1	AY.41	0.000294
N	418	Q418R	cAg	cGg	1	1	AY.42	0.00004
N	418	Q418R	cAg	cGg	1	1	AY.43	0.000004
N	418	Q418K	Cag	Aag	1	1	AY.43	0.000004
N	418	Q418E	Cag	Gag	1	1	AY.43	0.000004
N	418	Q418del	CAG	---	1	1	AY.43	0.000004
N	418	Q418R	cAg	cGg	1	1	AY.44	0.000006
N	418	Q418L	cAg	cTg	1	1	AY.45	0.000122
N	418	Q418E	Cag	Gag	1	1	AY.45	0.000122
N	418	Q418L	cAg	cTg	1	1	AY.46	0.000104
N	418	Q418H	caG	caT	1	1	AY.46.3	0.000934
N	418	Q418R	cAg	cGg	1	1	AY.46.6	0.000072
N	418	Q418H	caG	caT	1	1	AY.46.6	0.000072
N	418	Q418del	CAG	---	1	1	AY.47	0.000031
N	418	Q418Q	caG	caA	1	1	AY.47	0.000031
N	418	Q418del	CAG	---	1	1	AY.5	0.000021
N	418	Q418E	Cag	Gag	1	1	AY.5	0.000021
N	418	Q418X	Cag	Tag	1	1	AY.5	0.000021
N	418	Q418Q	caG	caA	1	1	AY.5.4	0.000277
N	418	Q418X	Cag	Tag	1	1	AY.53	0.000288
N	418	Q418Q	caG	caA	1	1	AY.54	0.000095
N	418	Q418P	cAg	cCg	1	1	AY.54	0.000095
N	418	Q418del	CAG	---	1	1	AY.62	0.000436
N	418	Q418H	caG	caT	1	1	AY.64	0.000595
N	418	Q418H	caG	caT	1	1	AY.7	0.000196
N	418	Q418H	caG	caC	1	1	AY.74	0.000116
N	418	Q418E	Cag	Gag	1	1	AY.75	0.000056
N	418	Q418Q	caG	caA	1	1	AY.75	0.000056
N	418	Q418X	Cag	Tag	1	1	AY.75	0.000056
N	418	Q418L	cAg	cTg	1	1	AY.75.1	0.00018
N	418	Q418X	Cag	Tag	1	1	AY.8	0.000606
N	418	Q418H	caG	caT	1	1	AY.82	0.001357
N	418	Q418H	caG	caT	1	1	AY.83	0.001724
N	418	Q418X	Cag	Tag	1	1	AY.84	0.000437
N	418	Q418Q	caG	caA	1	1	AY.88	0.000884
N	418	Q418H	caG	caT	1	1	AY.9	0.000068
N	418	Q418X	Cag	Tag	1	1	AY.9	0.000068
N	418	Q418del	CAG	---	1	1	AY.9.1	0.000084
N	418	Q418Q	caG	caA	1	1	AY.9.1	0.000084
N	418	Q418Q	caG	caA	1	1	AY.9.2	0.000037
N	418	Q418L	cAg	cTg	1	1	AY.98	0.000079
N	418	Q418L	cAg	cTg	1	1	AY.98.1	0.000048
N	418	Q418L	cAg	cTg	1	1	AY.99	0.001049
N	418	Q418del1	caG	ca-	1	1	AY.99	0.001049
N	418	Q418L	cAg	cTg	1	1	AY.99.2	0.000092
N	418	Q418X	Cag	Tag	1	1	AZ.2	0.000821
N	418	Q418del1	Cag	-ag	1	1	B.1	0.000009
N	418	Q418del2	CAG	--A	1	1	B.1	0.000009
N	418	Q418Y	CaG	TaT	1	1	B.1.1	0.000018
N	418	Q418K	Cag	Aag	1	1	B.1.1	0.000018
N	418	Q418L	cAg	cTg	1	1	B.1.1.1	0.000327
N	418	Q418H	caG	caC	1	1	B.1.1.163	0.007634
N	418	Q418H	caG	caT	1	1	B.1.1.196	0.005714
N	418	Q418D	CaG	GaC	1	1	B.1.1.202	0.076923
N	418	Q418R	cAg	cGg	1	1	B.1.1.214	0.000055
N	418	Q418H	caG	caT	1	1	B.1.1.221	0.010101
N	418	Q418R	cAg	cGg	1	1	B.1.1.222	0.000204
N	418	Q418Q	caG	caA	1	1	B.1.1.222	0.000204
N	418	Q418H	caG	caT	1	1	B.1.1.232	0.001815
N	418	Q418H	caG	caT	1	1	B.1.1.236	0.006897
N	418	Q418L	cAg	cTg	1	1	B.1.1.25	0.000569
N	418	Q418H	caG	caT	1	1	B.1.1.261	0.008621
N	418	Q418H	caG	caT	1	1	B.1.1.263	0.001558
N	418	Q418Q	caG	caA	1	1	B.1.1.265	0.003155
N	418	Q418X	CaG	TaA	1	1	B.1.1.27	0.00565
N	418	Q418H	caG	caT	1	1	B.1.1.277	0.000759
N	418	Q418X	Cag	Tag	1	1	B.1.1.279	0.001121
N	418	Q418H	caG	caT	1	1	B.1.1.284	0.000107
N	418	Q418H	caG	caT	1	1	B.1.1.300	0.010753
N	418	Q418X	Cag	Tag	1	1	B.1.1.311	0.000358
N	418	Q418X	Cag	Tag	1	1	B.1.1.323	0.014085
N	418	Q418Q	caG	caA	1	1	B.1.1.326	0.001761
N	418	Q418H	caG	caT	1	1	B.1.1.33	0.000421
N	418	Q418del	CAG	---	1	1	B.1.1.37	0.000193
N	418	Q418L	cAg	cTg	1	1	B.1.1.376	0.005952
N	418	Q418L	cAg	cTg	1	1	B.1.1.389	0.006061
N	418	Q418H	caG	caT	1	1	B.1.1.416	0.000905
N	418	Q418H	caG	caT	1	1	B.1.1.419	0.007407
N	418	Q418R	cAg	cGg	1	1	B.1.1.426	0.035714
N	418	Q418H	caG	caT	1	1	B.1.1.46	0.004367
N	418	Q418H	caG	caT	1	1	B.1.1.464	0.001473
N	418	Q418R	cAg	cGg	1	1	B.1.1.50	0.000679
N	418	Q418Q	caG	caA	1	1	B.1.1.518	0.006329
N	418	Q418X	Cag	Tag	1	1	B.1.1.519	0.00004
N	418	Q418H	caG	caT	1	1	B.1.1.522	0.017241
N	418	Q418H	caG	caT	1	1	B.1.1.526	0.003546
N	418	Q418L	cAg	cTg	1	1	B.1.1.70	0.000341
N	418	Q418H	caG	caT	1	1	B.1.1.8	0.003584
N	418	Q418del1	caG	ca-	1	1	B.1.118	0.006711
N	418	Q418X	Cag	Tag	1	1	B.1.160.29	0.004219
N	418	Q418H	caG	caT	1	1	B.1.161	0.017241
N	418	Q418E	Cag	Gag	1	1	B.1.177	0.000013
N	418	Q418X	Cag	Tag	1	1	B.1.177.21	0.000076
N	418	Q418K	Cag	Aag	1	1	B.1.177.35	0.000691
N	418	Q418H	caG	caT	1	1	B.1.177.4	0.000211
N	418	Q418H	caG	caT	1	1	B.1.177.56	0.000668
N	418	Q418H	caG	caT	1	1	B.1.177.57	0.000281
N	418	Q418H	caG	caT	1	1	B.1.177.60	0.000218
N	418	Q418L	cAG	cTA	1	1	B.1.177.63	0.002703
N	418	Q418H	caG	caT	1	1	B.1.177.65	0.000665
N	418	Q418H	caG	caT	1	1	B.1.177.75	0.001041
N	418	Q418Q	caG	caA	1	1	B.1.177.75	0.001041
N	418	Q418H	caG	caT	1	1	B.1.177.81	0.000189
N	418	Q418Q	caG	caA	1	1	B.1.177.81	0.000189
N	418	Q418H	caG	caC	1	1	B.1.177.83	0.001481
N	418	Q418H	caG	caT	1	1	B.1.177.84	0.006667
N	418	Q418X	Cag	Tag	1	1	B.1.177.85	0.005435
N	418	Q418R	cAg	cGg	1	1	B.1.177.86	0.000183
N	418	Q418H	caG	caT	1	1	B.1.177.86	0.000183
N	418	Q418H	caG	caT	1	1	B.1.195	0.005025
N	418	Q418del	CAG	---	1	1	B.1.2	0.000009
N	418	Q418P	cAg	cCg	1	1	B.1.2	0.000009
N	418	Q418E	Cag	Gag	1	1	B.1.2	0.000009
N	418	Q418H	caG	caC	1	1	B.1.22	0.001318
N	418	Q418H	caG	caT	1	1	B.1.221	0.000071
N	418	Q418H	caG	caT	1	1	B.1.234	0.000132
N	418	Q418X	Cag	Tag	1	1	B.1.234	0.000132
N	418	Q418X	Cag	Tag	1	1	B.1.243	0.00007
N	418	Q418Q	caG	caA	1	1	B.1.243	0.00007
N	418	Q418X	Cag	Tag	1	1	B.1.254	0.025
N	418	Q418del1	caG	ca-	1	1	B.1.258	0.000067
N	418	Q418X	Cag	Tag	1	1	B.1.258	0.000067
N	418	Q418del	CAG	---	1	1	B.1.258.16	0.001637
N	418	Q418Q	caG	caA	1	1	B.1.258.17	0.000104
N	418	Q418H	caG	caT	1	1	B.1.260	0.003344
N	418	Q418X	Cag	Tag	1	1	B.1.279	0.000514
N	418	Q418H	caG	caT	1	1	B.1.298	0.002114
N	418	Q418H	caG	caT	1	1	B.1.324	0.001605
N	418	Q418H	caG	caC	1	1	B.1.338	0.008621
N	418	Q418X	Cag	Tag	1	1	B.1.351	0.00003
N	418	Q418D	CaG	GaC	1	1	B.1.351	0.00003
N	418	Q418R	cAg	cGg	1	1	B.1.351	0.00003
N	418	Q418Q	caG	caA	1	1	B.1.351.2	0.000303
N	418	Q418H	caG	caC	1	1	B.1.36.1	0.00114
N	418	Q418H	caG	caT	1	1	B.1.36.10	0.004785
N	418	Q418R	cAg	cGg	1	1	B.1.36.16	0.001425
N	418	Q418H	caG	caT	1	1	B.1.36.18	0.00042
N	418	Q418H	caG	caT	1	1	B.1.36.29	0.000517
N	418	Q418X	Cag	Tag	1	1	B.1.36.38	0.001642
N	418	Q418L	cAg	cTg	1	1	B.1.36.8	0.001
N	418	Q418X	Cag	Tag	1	1	B.1.369	0.000285
N	418	Q418H	caG	caT	1	1	B.1.369	0.000285
N	418	Q418H	caG	caT	1	1	B.1.389	0.001002
N	418	Q418X	Cag	Tag	1	1	B.1.396	0.000706
N	418	Q418R	cAg	cGg	1	1	B.1.403	0.003268
N	418	Q418del	CAG	---	1	1	B.1.415	0.014286
N	418	Q418D	CaG	GaC	1	1	B.1.416	0.001269
N	418	Q418del	CAG	---	1	1	B.1.427	0.00005
N	418	Q418H	caG	caT	1	1	B.1.427	0.00005
N	418	Q418R	cAg	cGg	1	1	B.1.427	0.00005
N	418	Q418H	caG	caT	1	1	B.1.428	0.00102
N	418	Q418Q	caG	caA	1	1	B.1.429	0.000024
N	418	Q418del	CAG	---	1	1	B.1.438.1	0.000107
N	418	Q418H	caG	caT	1	1	B.1.468	0.005714
N	418	Q418H	caG	caT	1	1	B.1.470	0.001404
N	418	Q418H	caG	caT	1	1	B.1.524	0.001406
N	418	Q418L	cAG	cTA	1	1	B.1.524	0.001406
N	418	Q418P	cAg	cCg	1	1	B.1.526	0.000024
N	418	Q418Q	caG	caA	1	1	B.1.538	0.008065
N	418	Q418H	caG	caT	1	1	B.1.561	0.000397
N	418	Q418H	caG	caT	1	1	B.1.568	0.001111
N	418	Q418del1	Cag	-ag	1	1	B.1.577	0.000687
N	418	Q418del1	caG	ca-	1	1	B.1.588	0.00091
N	418	Q418Q	caG	caA	1	1	B.1.591	0.010638
N	418	Q418del	CAG	---	1	1	B.1.596	0.000087
N	418	Q418X	Cag	Tag	1	1	B.1.596	0.000087
N	418	Q418Q	caG	caA	1	1	B.1.596	0.000087
N	418	Q418H	caG	caT	1	1	B.1.606	0.006024
N	418	Q418H	caG	caT	1	1	B.1.609	0.000479
N	418	Q418X	Cag	Tag	1	1	B.1.617.1	0.000129
N	418	Q418del	CAG	---	1	1	B.1.617.1	0.000129
N	418	Q418E	Cag	Gag	1	1	B.1.619	0.000871
N	418	Q418X	Cag	Tag	1	1	B.1.621	0.000089
N	418	Q418H	caG	caT	1	1	B.1.628	0.000352
N	418	Q418X	Cag	Tag	1	1	B.1.76	0.011364
N	418	Q418X	Cag	Tag	1	1	B.1.93	0.000934
N	418	Q418H	caG	caT	1	1	B.11	0.005128
N	418	Q418del1	Cag	-ag	1	1	B.40	0.000364
N	418	Q418H	caG	caT	1	1	C.1	0.002392
N	418	Q418X	Cag	Tag	1	1	C.29	0.0625
N	418	Q418X	Cag	Tag	1	1	C.35	0.000774
N	418	Q418H	caG	caT	1	1	C.36	0.000911
N	418	Q418X	Cag	Tag	1	1	C.36	0.000911
N	418	Q418L	cAg	cTg	1	1	C.36.3.1	0.002717
N	418	Q418H	caG	caT	1	1	D.2	0.000075
N	418	Q418Q	caG	caA	1	1	D.2	0.000075
N	418	Q418del1	Cag	-ag	1	1	D.2	0.000075
N	418	Q418X	Cag	Tag	1	1	N.5	0.001767
N	418	Q418R	cAg	cGg	1	1	P.1	0.000016
N	418	Q418H	caG	caT	1	1	P.1.12	0.000484
N	418	Q418Q	caG	caA	1	1	P.1.16	0.000374
N	418	Q418L	cAg	cTg	1	1	P.1.6	0.001946
N	418	Q418R	cAg	cGg	1	1	P.1.7	0.000319
N	418	Q418X	Cag	Tag	1	1	P.1.7	0.000319
N	418	Q418H	caG	caT	1	1	Q.1	0.000126
N	418	Q418L	cAg	cTg	1	1	Q.1	0.000126
N	418	Q418Y	CaG	TaT	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.