CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 416

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N416S416LnonsyntCatTa254325390.99842729519-29521
N416S416LnonsynTCACTT254310.00039323629519-29521
N416S416LnonsynTCaCTa254310.00039323629519-29521
N416S416LnonsyntCAtTG254310.00039323629519-29521
N416S416LnonsynTCACTC254310.00039323629519-29521
N416S416SsyntcAtcT13057180.55019229519-29521
N416S416SsyntcAtcG13055680.43524929519-29521
N416S416SsyntcAtcC1305190.014559429519-29521
N416S416PnonsynTcaCca65630.96923129519-29521
N416S416PnonsynTcACcT6520.030769229519-29521
N416S416AnonsynTcaGca43420.97674429519-29521
N416S416AnonsynTcAGcC4310.023255829519-29521
N416S416deldelTCA---3737129519-29521
N416S416TnonsynTcaAca3434129519-29521
N416S416XnonsyntCatGa28140.529519-29521
N416S416XnonsyntCatAa28130.46428629519-29521
N416S416XnonsyntCAtAG2810.035714329519-29521
N416S416del1deltCat-a320.66666729519-29521
N416S416del1delTca-ca310.33333329519-29521
N416S416del2deltCAt--22129519-29521
N416S416FnonsyntCAtTT210.529519-29521
N416S416FnonsyntCAtTC210.529519-29521
N416S416GnonsynTCAGGG11129519-29521
N416S416HnonsynTCACAT11129519-29521

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N416S416LtCatTa25392543All0.000486
N416S416LtCAtTG12543All0
N416S416LTCACTC12543All0
N416S416LTCACTT12543All0
N416S416LTCaCTa12543All0
N416S416StcAtcT7181305All0.000137
N416S416StcAtcG5681305All0.000109
N416S416StcAtcC191305All0.000004
N416S416StcAtcG411423AY.40.00064
N416S416StcAtcT9423AY.40.000014
N416S416StcAtcC3423AY.40.000005
N416S416LtCatTa415415AY.40.000646
N416S416LtCatTa406407B.1.1.70.000363
N416S416LTCACTT1407B.1.1.70.000001
N416S416StcAtcT223225AY.390.005511
N416S416StcAtcG2225AY.390.000049
N416S416StcAtcT213213B.1.1.2401
N416S416LtCatTa187188B.1.617.20.000704
N416S416LTCACTC1188B.1.617.20.000004
N416S416LtCatTa116116B.1.20.001021
N416S416LtCatTa115115AY.1030.000714
N416S416StcAtcG60100B.1.1.70.000054
N416S416StcAtcT38100B.1.1.70.000034
N416S416StcAtcC2100B.1.1.70.000002
N416S416LtCatTa8484AY.440.000511
N416S416LtCatTa8080AY.430.000354
N416S416LtCatTa7777AY.250.000463
N416S416LtCatTa7474AY.30.000736
N416S416PTcaCca6365All0.000012
N416S416PTcACcT265All0
N416S416LtCatTa4949AY.1190.00173
N416S416LtCatTa4949B.1.177.210.003747
N416S416ATcaGca4243All0.000008
N416S416ATcAGcC143All0
N416S416LtCatTa4343B.1.5260.001011
N416S416LtCatTa4040B.1.1770.000527
N416S416delTCA---3737All0.000007
N416S416LtCatTa3737B.1.4290.000871
N416S416StcAtcT3536B.1.5260.000823
N416S416StcAtcG136B.1.5260.000024
N416S416TTcaAca3434All0.000007
N416S416StcAtcT2434B.10.00022
N416S416StcAtcG1034B.10.000092
N416S416StcAtcT3333AY.710.015677
N416S416PTcaCca3131AY.40.000048
N416S416LtCatTa3131B.10.000284
N416S416LtCatTa3030AY.1020.000795
N416S416StcAtcT1629B.1.617.20.00006
N416S416StcAtcG1229B.1.617.20.000045
N416S416StcAtcC129B.1.617.20.000004
N416S416XtCatGa1428All0.000003
N416S416XtCatAa1328All0.000002
N416S416XtCAtAG128All0
N416S416LtCatTa2525AY.390.000618
N416S416LtCatTa2424B.1.3510.000713
N416S416LtCatTa2424P.10.000378
N416S416StcAtcT2222AJ.11
N416S416LtCatTa2222R.10.00198
N416S416LtCatTa2020B.1.5750.006068
N416S416LtCatTa1717AY.70.003332
N416S416LtCatTa1515B.1.10.000272
N416S416LtCatTa1515B.1.4270.000757
N416S416LtCatTa1414AY.46.40.002303
N416S416LtCatTa1414AY.50.000289
N416S416ATcaGca1313AY.130.002093
N416S416LtCatTa1313B.1.3240.020867
N416S416LtCatTa1212AY.260.00034
N416S416LtCatTa1212B.1.1.2130.26087
N416S416StcAtcG811AY.1030.00005
N416S416StcAtcT311AY.1030.000019
N416S416LtCatTa1111AY.1180.000689
N416S416StcAtcG611AY.250.000036
N416S416StcAtcT511AY.250.00003
N416S416LtCatTa1111AY.750.000616
N416S416LtCatTa1111B.1.360.001605
N416S416LtCatTa1111B.1.4090.008594
N416S416LtCatTa1111B.1.5250.001245
N416S416LtCatTa1010AY.290.000158
N416S416LtCatTa1010AY.4.20.000217
N416S416StcAtcG510B.1.10.000091
N416S416StcAtcT510B.1.10.000091
N416S416LtCatTa1010Q.10.001263
N416S416LtCatTa99B.1.1600.000281
N416S416LtCatTa88A.23.10.005634
N416S416LtCatTa88AY.1140.001849
N416S416LtCatTa88AY.200.000311
N416S416StcAtcG68AY.430.000027
N416S416StcAtcT28AY.430.000009
N416S416StcAtcT58AY.440.00003
N416S416StcAtcG38AY.440.000018
N416S416LtCatTa88AY.980.000632
N416S416LtCatTa88B.1.1.5190.000318
N416S416StcAtcT88B.1.5960.000697
N416S416LtCatTa88P.1.60.015564
N416S416LtCatTa77AY.420.000282
N416S416ATcaGca77AY.440.000043
N416S416StcAtcG77AY.460.000729
N416S416StcAtcC77B.1.3620.010786
N416S416LtCatTa77B.1.6210.00062
N416S416LtCatTa66AY.1000.000276
N416S416LtCatTa66AY.116.10.001869
N416S416StcAtcT46AY.30.00004
N416S416StcAtcG26AY.30.00002
N416S416delTCA---66B.1.1.70.000005
N416S416StcAtcT56B.1.20.000044
N416S416StcAtcC16B.1.20.000009
N416S416LtCatTa66B.1.5960.000523
N416S416LtCatTa66P.1.140.000287
N416S416LtCatTa55AY.1060.001674
N416S416LtCatTa55AY.130.000805
N416S416ATcaGca55AY.210.009488
N416S416PTcaCca55AY.30.00005
N416S416LtCatTa55AY.60.000206
N416S416TTcaAca55AY.98.10.000242
N416S416LtCatTa55AY.99.20.000461
N416S416ATcaGca55B.1.1.70.000004
N416S416StcAtcG45B.1.3510.000119
N416S416StcAtcT15B.1.3510.00003
N416S416LtCatTa55B.1.6370.000365
N416S416LtCatTa55D.20.000375
N416S416StcAtcT34AY.160.001139
N416S416StcAtcG14AY.160.00038
N416S416LtCatTa44AY.20.001425
N416S416LtCatTa44AY.210.00759
N416S416LtCatTa44AY.230.000279
N416S416StcAtcT44AY.340.000388
N416S416TTcaAca44AY.40.000006
N416S416LtCatTa44AY.450.000487
N416S416LtCatTa44AY.470.000124
N416S416PTcaCca44AY.50.000083
N416S416StcAtcT34AY.50.000062
N416S416StcAtcG14AY.50.000021
N416S416LtCatTa44AY.700.000834
N416S416LtCatTa44AY.98.10.000194
N416S416LtCatTa44B.1.1.10.001307
N416S416StcAtcC44B.1.1.2140.000222
N416S416XtCatGa44B.1.1.70.000004
N416S416PTcaCca44B.1.1.70.000004
N416S416LtCatTa44B.1.2430.000278
N416S416LtCatTa44B.1.258.170.000416
N416S416StcAtcG34B.1.4270.000151
N416S416StcAtcT14B.1.4270.00005
N416S416XtCatAa34B.1.617.20.000011
N416S416XtCAtAG14B.1.617.20.000004
N416S416del1tCat-a23All0
N416S416del1Tca-ca13All0
N416S416LtCatTa33AY.1170.000254
N416S416StcAtcT33AY.1190.000106
N416S416LtCatTa33AY.140.000264
N416S416StcAtcT23AY.140.000176
N416S416StcAtcG13AY.140.000088
N416S416StcAtcT33AY.260.000085
N416S416LtCatTa33AY.29.10.000662
N416S416LtCatTa33AY.330.0002
N416S416LtCatTa33AY.360.000445
N416S416TTcaAca33AY.39.10.000119
N416S416StcAtcT23AY.39.10.000079
N416S416StcAtcG13AY.39.10.00004
N416S416StcAtcT33AY.4.20.000065
N416S416LtCatTa33AY.460.000312
N416S416LtCatTa33AY.540.000286
N416S416LtCatTa33AY.590.001589
N416S416LtCatTa33AY.610.000314
N416S416LtCatTa33AY.9.10.000251
N416S416LtCatTa33B.1.1.3180.000905
N416S416LtCatTa33B.1.1.3650.01676
N416S416LtCatTa33B.1.1270.006593
N416S416StcAtcT33B.1.1770.00004
N416S416LtCatTa33B.1.214.20.001799
N416S416LtCatTa33B.1.2210.000213
N416S416TTcaAca33B.1.360.000438
N416S416LtCatTa33B.1.36.80.003
N416S416LtCatTa33B.1.438.10.000322
N416S416StcAtcG33B.1.4970.000944
N416S416delTCA---33B.1.617.20.000011
N416S416LtCatTa33C.370.000348
N416S416delTCA---33P.10.000047
N416S416StcAtcG23P.10.000032
N416S416StcAtcT13P.10.000016
N416S416StcAtcT33Q.10.000379
N416S416del2tCAt--22All0
N416S416FtCAtTC12All0
N416S416FtCAtTT12All0
N416S416LtCatTa22AY.120.000632
N416S416TTcaAca22AY.200.000078
N416S416ATcaGca22AY.200.000078
N416S416PTcaCca22AY.200.000078
N416S416StcAtcT22AY.200.000078
N416S416delTCA---22AY.250.000012
N416S416ATcaGca22AY.250.000012
N416S416LtCatTa22AY.270.000129
N416S416StcAtcT22AY.330.000134
N416S416LtCatTa22AY.370.000632
N416S416delTCA---22AY.40.000003
N416S416LtCatTa22AY.4.10.001475
N416S416TTcaAca22AY.4.20.000043
N416S416LtCatTa22AY.4.40.000818
N416S416StcAtcT22AY.4.50.000215
N416S416LtCatTa22AY.4.50.000215
N416S416LtCatTa12AY.400.000964
N416S416LtCAtTG12AY.400.000964
N416S416StcAtcT12AY.420.00004
N416S416StcAtcG12AY.420.00004
N416S416PTcaCca22AY.430.000009
N416S416TTcaAca22AY.440.000012
N416S416LtCatTa22AY.46.60.000144
N416S416LtCatTa22AY.5.30.000675
N416S416StcAtcG22AY.5.40.000553
N416S416LtCatTa22AY.660.002139
N416S416LtCatTa22AY.7.10.000225
N416S416LtCatTa22AY.740.000231
N416S416LtCatTa22AY.75.10.000361
N416S416LtCatTa22AY.840.000875
N416S416LtCatTa22AY.880.001768
N416S416LtCatTa22AY.9.20.000073
N416S416LtCatTa22AY.940.000885
N416S416LtCatTa22AY.960.004149
N416S416StcAtcT22AY.980.000158
N416S416LtCatTa22AY.99.10.003106
N416S416delTCA---22B.10.000018
N416S416PTcaCca22B.10.000018
N416S416XtCatGa12B.10.000009
N416S416XtCatAa12B.10.000009
N416S416delTCA---22B.1.10.000036
N416S416LtCatTa22B.1.1.2140.000111
N416S416LtCatTa22B.1.1.2800.006173
N416S416LtCatTa22B.1.1.2840.000215
N416S416StcAtcT12B.1.1.330.000421
N416S416StcAtcC12B.1.1.330.000421
N416S416LtCatTa22B.1.1.3330.002153
N416S416LtCatTa22B.1.1.4160.00181
N416S416LtCatTa22B.1.1.4340.000697
N416S416del2tCAt--22B.1.1.70.000002
N416S416LtCatTa22B.1.1.700.000682
N416S416StcAtcT22B.1.160.160.001859
N416S416LtCatTa22B.1.177.100.001756
N416S416LtCatTa22B.1.177.540.001213
N416S416LtCatTa22B.1.177.570.000562
N416S416StcAtcG22B.1.177.600.000437
N416S416LtCatTa22B.1.177.860.000367
N416S416TTcaAca22B.1.20.000018
N416S416StcAtcT22B.1.2210.000142
N416S416LtCatTa22B.1.2340.000264
N416S416LtCatTa22B.1.2580.000133
N416S416LtCatTa22B.1.4280.002041
N416S416LtCatTa22B.1.4690.00722
N416S416LtCatTa22B.1.4920.014085
N416S416LtCatTa22B.1.5090.001732
N416S416LtCatTa22B.1.5170.000854
N416S416LtCatTa22B.1.617.10.000258
N416S416XtCatAa22B.1.617.10.000258
N416S416LtCatTa22B.1.6280.000705
N416S416LtCatTa22B.1.6300.010471
N416S416TTcaAca22B.1.6370.000146
N416S416LtCatTa22B.1.6390.043478
N416S416ATcaGca22N.50.003534
N416S416LtCatTa22P.1.100.000539
N416S416LtCatTa22P.1.70.000639
N416S416LtCatTa22P.30.00319
N416S416LtCatTa22Q.40.00091
N416S416LtCatTa22Q.80.00033
N416S416XtCatAa11A0.000387
N416S416StcAtcT11A0.000387
N416S416LtCatTa11A.10.000282
N416S416LtCatTa11A.20.000662
N416S416StcAtcG11A.290.005319
N416S416LtCatTa11AE.80.000489
N416S416LtCatTa11AH.20.012048
N416S416GTCAGGG11All0
N416S416HTCACAT11All0
N416S416StcAtcG11AY.1000.000046
N416S416XtCatGa11AY.1030.000006
N416S416XtCatGa11AY.1040.001984
N416S416LtCatTa11AY.1050.000643
N416S416StcAtcT11AY.1060.000335
N416S416LtCatTa11AY.1080.001103
N416S416LtCatTa11AY.1100.000113
N416S416StcAtcT11AY.1130.000142
N416S416LtCatTa11AY.1130.000142
N416S416delTCA---11AY.1140.000231
N416S416StcAtcT11AY.1160.000287
N416S416StcAtcT11AY.1170.000085
N416S416StcAtcG11AY.120.000316
N416S416ATcaGca11AY.120.000316
N416S416LtCatTa11AY.1200.000037
N416S416StcAtcT11AY.1200.000037
N416S416StcAtcT11AY.1210.000135
N416S416delTCA---11AY.130.000161
N416S416StcAtcT11AY.130.000161
N416S416LtCatTa11AY.16.10.00047
N416S416XtCatAa11AY.230.00007
N416S416PTcaCca11AY.230.00007
N416S416StcAtcT11AY.240.000431
N416S416XtCatGa11AY.250.000006
N416S416delTCA---11AY.260.000028
N416S416PTcaCca11AY.270.000065
N416S416ATcaGca11AY.270.000065
N416S416delTCA---11AY.270.000065
N416S416XtCatGa11AY.290.000016
N416S416ATcaGca11AY.290.000016
N416S416PTcaCca11AY.3.10.000085
N416S416LtCatTa11AY.3.10.000085
N416S416LtCatTa11AY.340.000097
N416S416LtCatTa11AY.39.10.00004
N416S416XtCatAa11AY.40.000002
N416S416FtCAtTC11AY.40.000002
N416S416PTcaCca11AY.4.20.000022
N416S416XtCatAa11AY.430.000004
N416S416delTCA---11AY.430.000004
N416S416delTCA---11AY.440.000006
N416S416PTcaCca11AY.440.000006
N416S416XtCatGa11AY.46.10.001027
N416S416LtCatTa11AY.46.10.001027
N416S416TTcaAca11AY.46.20.000635
N416S416ATcaGca11AY.46.60.000072
N416S416StcAtcT11AY.46.60.000072
N416S416delTCA---11AY.470.000031
N416S416StcAtcG11AY.470.000031
N416S416PTcaCca11AY.470.000031
N416S416del1tCat-a11AY.480.000465
N416S416TTcaAca11AY.50.000021
N416S416delTCA---11AY.50.000021
N416S416ATcAGcC11AY.50.000021
N416S416TTcaAca11AY.5.40.000277
N416S416LtCatTa11AY.530.000288
N416S416LtCatTa11AY.550.000917
N416S416XtCatAa11AY.610.000105
N416S416delTCA---11AY.620.000436
N416S416LtCatTa11AY.620.000436
N416S416LtCatTa11AY.630.000387
N416S416LtCatTa11AY.640.000595
N416S416LtCatTa11AY.650.000533
N416S416LtCatTa11AY.670.000464
N416S416LtCatTa11AY.680.000274
N416S416LtCatTa11AY.730.000665
N416S416StcAtcT11AY.740.000116
N416S416StcAtcT11AY.870.000833
N416S416delTCA---11AY.9.10.000084
N416S416StcAtcG11AY.9.10.000084
N416S416LtCatTa11AY.910.00073
N416S416LtCatTa11AY.91.10.004065
N416S416LtCatTa11AY.950.000761
N416S416LtCatTa11AY.970.001701
N416S416StcAtcT11AY.99.20.000092
N416S416PTcaCca11AY.99.20.000092
N416S416LTCaCTa11B0.000128
N416S416GTCAGGG11B.10.000009
N416S416TTcaAca11B.10.000009
N416S416TTcaAca11B.1.10.000018
N416S416XtCatAa11B.1.10.000018
N416S416PTcACcT11B.1.10.000018
N416S416StcAtcG11B.1.1.10.000327
N416S416StcAtcT11B.1.1.1660.033333
N416S416LtCatTa11B.1.1.1740.003378
N416S416LtCatTa11B.1.1.2220.000204
N416S416LtCatTa11B.1.1.2410.00207
N416S416LtCatTa11B.1.1.2430.004082
N416S416LtCatTa11B.1.1.250.000569
N416S416XtCatGa11B.1.1.270.00565
N416S416StcAtcT11B.1.1.2700.010309
N416S416LtCatTa11B.1.1.2770.000759
N416S416LtCatTa11B.1.1.280.000311
N416S416XtCatGa11B.1.1.280.000311
N416S416LtCatTa11B.1.1.2910.000742
N416S416LtCatTa11B.1.1.3060.000438
N416S416StcAtcT11B.1.1.3070.002532
N416S416LtCatTa11B.1.1.3170.000412
N416S416LtCatTa11B.1.1.3480.000796
N416S416LtCatTa11B.1.1.3690.000446
N416S416delTCA---11B.1.1.370.000193
N416S416PTcaCca11B.1.1.3720.000689
N416S416StcAtcT11B.1.1.4160.000905
N416S416StcAtcG11B.1.1.500.000679
N416S416TTcaAca11B.1.1.5190.00004
N416S416TTcaAca11B.1.1.70.000001
N416S416PTcaCca11B.1.1.700.000341
N416S416LtCatTa11B.1.1.80.003584
N416S416StcAtcT11B.1.1600.000031
N416S416LtCatTa11B.1.160.100.008065
N416S416PTcaCca11B.1.1770.000013
N416S416LtCatTa11B.1.177.200.001517
N416S416LtCatTa11B.1.177.430.001477
N416S416LtCatTa11B.1.177.50.001242
N416S416LtCatTa11B.1.177.580.001332
N416S416LtCatTa11B.1.177.600.000218
N416S416FtCAtTT11B.1.177.630.002703
N416S416LtCatTa11B.1.177.750.001041
N416S416LtCatTa11B.1.177.820.000477
N416S416StcAtcT11B.1.177.830.001481
N416S416LtCatTa11B.1.177.90.001332
N416S416LtCatTa11B.1.1890.004292
N416S416delTCA---11B.1.20.000009
N416S416XtCatAa11B.1.20.000009
N416S416PTcaCca11B.1.2120.016667
N416S416LtCatTa11B.1.221.10.002907
N416S416LtCatTa11B.1.2320.000537
N416S416StcAtcG11B.1.2560.017241
N416S416StcAtcT11B.1.2580.000067
N416S416LtCatTa11B.1.258.110.000396
N416S416delTCA---11B.1.258.160.001637
N416S416LtCatTa11B.1.258.40.003448
N416S416LtCatTa11B.1.2650.001271
N416S416LtCatTa11B.1.2790.000514
N416S416LtCatTa11B.1.2980.002114
N416S416LtCatTa11B.1.3110.000275
N416S416LtCatTa11B.1.3200.001245
N416S416LtCatTa11B.1.3490.000715
N416S416XtCatGa11B.1.3510.00003
N416S416TTcaAca11B.1.3510.00003
N416S416HTCACAT11B.1.3510.00003
N416S416PTcACcT11B.1.36.10.00114
N416S416LtCatTa11B.1.36.170.000494
N416S416LtCatTa11B.1.36.280.005747
N416S416LtCatTa11B.1.36.290.000517
N416S416del1tCat-a11B.1.36.290.000517
N416S416LtCatTa11B.1.36.330.007576
N416S416LtCatTa11B.1.3610.001289
N416S416LtCatTa11B.1.3670.000792
N416S416LtCatTa11B.1.3960.000706
N416S416LtCatTa11B.1.4040.001302
N416S416delTCA---11B.1.4150.014286
N416S416delTCA---11B.1.4270.00005
N416S416PTcaCca11B.1.4290.000024
N416S416delTCA---11B.1.438.10.000107
N416S416LtCatTa11B.1.4410.009615
N416S416ATcaGca11B.1.4590.004082
N416S416LtCatTa11B.1.4650.003802
N416S416StcAtcG11B.1.4710.002732
N416S416LtCatTa11B.1.4970.000315
N416S416StcAtcG11B.1.5090.000866
N416S416LtCatTa11B.1.5610.000397
N416S416StcAtcG11B.1.5770.000687
N416S416LtCatTa11B.1.595.40.007299
N416S416delTCA---11B.1.5960.000087
N416S416LtCatTa11B.1.6090.000479
N416S416LtCatTa11B.1.6100.003546
N416S416StcAtcG11B.1.617.10.000129
N416S416ATcaGca11B.1.617.20.000004
N416S416TTcaAca11B.1.617.20.000004
N416S416LtCatTa11B.1.619.10.000641
N416S416LtCatTa11B.1.6200.000946
N416S416StcAtcG11B.1.6310.003367
N416S416LtCatTa11B.1.80.001972
N416S416LtCatTa11B.3.10.001658
N416S416LtCatTa11B.400.000364
N416S416LtCatTa11B.550.00295
N416S416PTcaCca11B.60.00091
N416S416del1Tca-ca11P.10.000016
N416S416StcAtcT11P.1.10.000318
N416S416StcAtcT11P.1.110.010204
N416S416LtCatTa11P.1.120.000484
N416S416LtCatTa11P.20.000187
N416S416XtCatGa11Q.10.000126
N416S416LtCatTa11Q.30.000145
N416S416StcAtcG11Q.80.000165