CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 412 | S412S | syn | agC | agT | 120872 | 120872 | 1 | 29507-29509 | |
N | 412 | S412R | nonsyn | Agc | Cgc | 15019 | 14934 | 0.99434 | 29507-29509 | |
N | 412 | S412R | nonsyn | agC | agA | 15019 | 60 | 0.00399494 | 29507-29509 | |
N | 412 | S412R | nonsyn | agC | agG | 15019 | 21 | 0.00139823 | 29507-29509 | |
N | 412 | S412R | nonsyn | AgC | CgT | 15019 | 4 | 0.000266329 | 29507-29509 | |
N | 412 | S412I | nonsyn | aGc | aTc | 1118 | 1107 | 0.990161 | 29507-29509 | |
N | 412 | S412I | nonsyn | aGC | aTT | 1118 | 11 | 0.009839 | 29507-29509 | |
N | 412 | S412N | nonsyn | aGc | aAc | 769 | 767 | 0.997399 | 29507-29509 | |
N | 412 | S412N | nonsyn | aGC | aAT | 769 | 2 | 0.00260078 | 29507-29509 | |
N | 412 | S412G | nonsyn | Agc | Ggc | 123 | 113 | 0.918699 | 29507-29509 | |
N | 412 | S412G | nonsyn | AgC | GgT | 123 | 8 | 0.0650406 | 29507-29509 | |
N | 412 | S412G | nonsyn | AgC | GgG | 123 | 1 | 0.00813008 | 29507-29509 | |
N | 412 | S412G | nonsyn | AgC | GgA | 123 | 1 | 0.00813008 | 29507-29509 | |
N | 412 | S412del | del | AGC | --- | 26 | 26 | 1 | 29507-29509 | |
N | 412 | S412C | nonsyn | Agc | Tgc | 17 | 17 | 1 | 29507-29509 | |
N | 412 | S412L | nonsyn | AGc | CTc | 13 | 13 | 1 | 29507-29509 | |
N | 412 | S412T | nonsyn | aGc | aCc | 13 | 13 | 1 | 29507-29509 | |
N | 412 | S412W | nonsyn | AgC | TgG | 10 | 10 | 1 | 29507-29509 | |
N | 412 | S412V | nonsyn | AGc | GTc | 7 | 7 | 1 | 29507-29509 | |
N | 412 | S412K | nonsyn | aGC | aAA | 5 | 3 | 0.6 | 29507-29509 | |
N | 412 | S412K | nonsyn | aGC | aAG | 5 | 2 | 0.4 | 29507-29509 | |
N | 412 | S412D | nonsyn | AGc | GAc | 4 | 2 | 0.5 | 29507-29509 | |
N | 412 | S412D | nonsyn | AGC | GAT | 4 | 2 | 0.5 | 29507-29509 | |
N | 412 | S412del1 | del | Agc | -gc | 4 | 2 | 0.5 | 29507-29509 | |
N | 412 | S412del1 | del | aGc | a-c | 4 | 1 | 0.25 | 29507-29509 | |
N | 412 | S412del1 | del | agC | ag- | 4 | 1 | 0.25 | 29507-29509 | |
N | 412 | S412E | nonsyn | AGC | GAG | 1 | 1 | 1 | 29507-29509 | |
N | 412 | S412del2 | del | aGC | a-- | 1 | 1 | 1 | 29507-29509 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 412 | S412S | agC | agT | 120872 | 120872 | All | 0.023118 |
N | 412 | S412S | agC | agT | 97802 | 97802 | AY.3 | 0.972777 |
N | 412 | S412R | Agc | Cgc | 14934 | 15019 | All | 0.002856 |
N | 412 | S412R | agC | agA | 60 | 15019 | All | 0.000011 |
N | 412 | S412R | agC | agG | 21 | 15019 | All | 0.000004 |
N | 412 | S412R | AgC | CgT | 4 | 15019 | All | 0.000001 |
N | 412 | S412R | Agc | Cgc | 14708 | 14712 | AY.27 | 0.951912 |
N | 412 | S412R | AgC | CgT | 4 | 14712 | AY.27 | 0.000259 |
N | 412 | S412S | agC | agT | 11464 | 11464 | AY.3.1 | 0.977406 |
N | 412 | S412S | agC | agT | 1557 | 1557 | B.1.617.2 | 0.005863 |
N | 412 | S412S | agC | agT | 1332 | 1332 | B.1.1.7 | 0.001192 |
N | 412 | S412I | aGc | aTc | 1107 | 1118 | All | 0.000212 |
N | 412 | S412I | aGC | aTT | 11 | 1118 | All | 0.000002 |
N | 412 | S412N | aGc | aAc | 767 | 769 | All | 0.000147 |
N | 412 | S412N | aGC | aAT | 2 | 769 | All | 0 |
N | 412 | S412S | agC | agT | 677 | 677 | AY.11 | 0.906292 |
N | 412 | S412S | agC | agT | 645 | 645 | AY.25 | 0.00388 |
N | 412 | S412S | agC | agT | 627 | 627 | AY.4.2 | 0.013599 |
N | 412 | S412S | agC | agT | 598 | 598 | AY.117 | 0.050541 |
N | 412 | S412S | agC | agT | 504 | 504 | AY.47 | 0.015677 |
N | 412 | S412S | agC | agT | 477 | 477 | Q.3 | 0.069181 |
N | 412 | S412S | agC | agT | 433 | 433 | AY.92 | 0.12439 |
N | 412 | S412S | agC | agT | 301 | 301 | AY.103 | 0.001869 |
N | 412 | S412S | agC | agT | 295 | 295 | AY.44 | 0.001796 |
N | 412 | S412S | agC | agT | 259 | 259 | B.1.2 | 0.002281 |
N | 412 | S412I | aGc | aTc | 249 | 249 | B.1.177 | 0.003279 |
N | 412 | S412S | agC | agT | 226 | 226 | AY.4 | 0.000352 |
N | 412 | S412S | agC | agT | 209 | 209 | AY.105 | 0.134405 |
N | 412 | S412S | agC | agT | 203 | 203 | AY.84 | 0.088801 |
N | 412 | S412N | aGc | aAc | 178 | 178 | B.1.630 | 0.931937 |
N | 412 | S412S | agC | agT | 169 | 169 | AY.119 | 0.005967 |
N | 412 | S412S | agC | agT | 166 | 166 | AY.5.3 | 0.056005 |
N | 412 | S412S | agC | agT | 150 | 150 | AY.43 | 0.000665 |
N | 412 | S412S | agC | agT | 141 | 141 | AY.46.6 | 0.010181 |
N | 412 | S412S | agC | agT | 140 | 140 | AY.102 | 0.003712 |
N | 412 | S412I | aGc | aTc | 134 | 134 | B.1.1.7 | 0.00012 |
N | 412 | S412G | Agc | Ggc | 113 | 123 | All | 0.000022 |
N | 412 | S412G | AgC | GgT | 8 | 123 | All | 0.000002 |
N | 412 | S412G | AgC | GgG | 1 | 123 | All | 0 |
N | 412 | S412G | AgC | GgA | 1 | 123 | All | 0 |
N | 412 | S412S | agC | agT | 114 | 114 | AY.42 | 0.004586 |
N | 412 | S412I | aGc | aTc | 94 | 94 | AY.44 | 0.000572 |
N | 412 | S412S | agC | agT | 91 | 91 | AY.39 | 0.002249 |
N | 412 | S412S | agC | agT | 91 | 91 | AY.5 | 0.001879 |
N | 412 | S412S | agC | agT | 89 | 89 | AY.116 | 0.025523 |
N | 412 | S412I | aGc | aTc | 89 | 89 | AZ.4 | 0.298658 |
N | 412 | S412S | agC | agT | 82 | 82 | AY.110 | 0.00924 |
N | 412 | S412S | agC | agT | 76 | 76 | B.1 | 0.000696 |
N | 412 | S412N | aGc | aAc | 76 | 76 | B.1.1.7 | 0.000068 |
N | 412 | S412S | agC | agT | 72 | 72 | AY.26 | 0.002038 |
N | 412 | S412N | aGc | aAc | 72 | 72 | B.1.177 | 0.000948 |
N | 412 | S412R | Agc | Cgc | 67 | 67 | AY.37 | 0.021176 |
N | 412 | S412I | aGc | aTc | 65 | 65 | AY.102 | 0.001723 |
N | 412 | S412N | aGc | aAc | 60 | 60 | B.1.258 | 0.003993 |
N | 412 | S412S | agC | agT | 57 | 57 | AY.45 | 0.006936 |
N | 412 | S412S | agC | agT | 56 | 56 | AY.98.1 | 0.002712 |
N | 412 | S412S | agC | agT | 54 | 54 | B.1.36.16 | 0.076923 |
N | 412 | S412S | agC | agT | 54 | 54 | B.1.427 | 0.002727 |
N | 412 | S412S | agC | agT | 53 | 53 | AY.46 | 0.005516 |
N | 412 | S412I | aGc | aTc | 52 | 52 | B.1.617.2 | 0.000196 |
N | 412 | S412R | Agc | Cgc | 49 | 51 | B.1.617.2 | 0.000185 |
N | 412 | S412R | agC | agA | 2 | 51 | B.1.617.2 | 0.000008 |
N | 412 | S412I | aGc | aTc | 50 | 50 | AY.4 | 0.000078 |
N | 412 | S412S | agC | agT | 49 | 49 | AY.118 | 0.00307 |
N | 412 | S412I | aGc | aTc | 48 | 49 | AY.25 | 0.000289 |
N | 412 | S412I | aGC | aTT | 1 | 49 | AY.25 | 0.000006 |
N | 412 | S412S | agC | agT | 49 | 49 | AY.33 | 0.003272 |
N | 412 | S412S | agC | agT | 47 | 47 | AY.113 | 0.006692 |
N | 412 | S412S | agC | agT | 46 | 46 | AY.106 | 0.015405 |
N | 412 | S412N | aGc | aAc | 42 | 42 | AY.47 | 0.001306 |
N | 412 | S412S | agC | agT | 41 | 41 | P.1 | 0.000646 |
N | 412 | S412S | agC | agT | 40 | 40 | AY.23 | 0.00279 |
N | 412 | S412I | aGc | aTc | 38 | 38 | AY.34 | 0.003685 |
N | 412 | S412S | agC | agT | 38 | 38 | AY.73 | 0.025283 |
N | 412 | S412N | aGc | aAc | 36 | 36 | AY.39 | 0.00089 |
N | 412 | S412S | agC | agT | 36 | 36 | AY.79 | 0.043584 |
N | 412 | S412N | aGc | aAc | 35 | 35 | AY.4 | 0.000054 |
N | 412 | S412S | agC | agT | 34 | 34 | B.1.177.73 | 0.019253 |
N | 412 | S412S | agC | agT | 33 | 33 | AY.62 | 0.014379 |
N | 412 | S412S | agC | agT | 33 | 33 | AY.95 | 0.025114 |
N | 412 | S412S | agC | agT | 32 | 32 | AY.82 | 0.043419 |
N | 412 | S412S | agC | agT | 31 | 31 | AY.99 | 0.032529 |
N | 412 | S412S | agC | agT | 30 | 30 | AY.55 | 0.027523 |
N | 412 | S412S | agC | agT | 30 | 30 | C.37 | 0.003482 |
N | 412 | S412S | agC | agT | 29 | 29 | AY.100 | 0.001334 |
N | 412 | S412R | agC | agA | 24 | 29 | B.1.1.7 | 0.000021 |
N | 412 | S412R | agC | agG | 4 | 29 | B.1.1.7 | 0.000004 |
N | 412 | S412R | Agc | Cgc | 1 | 29 | B.1.1.7 | 0.000001 |
N | 412 | S412S | agC | agT | 27 | 27 | B.1.177 | 0.000356 |
N | 412 | S412I | aGc | aTc | 27 | 27 | B.1.369 | 0.007701 |
N | 412 | S412del | AGC | --- | 26 | 26 | All | 0.000005 |
N | 412 | S412I | aGc | aTc | 24 | 24 | AY.116 | 0.006883 |
N | 412 | S412S | agC | agT | 24 | 24 | B | 0.003067 |
N | 412 | S412S | agC | agT | 23 | 23 | AY.46.1 | 0.023614 |
N | 412 | S412S | agC | agT | 23 | 23 | AY.98 | 0.001817 |
N | 412 | S412S | agC | agT | 23 | 23 | B.1.1 | 0.000417 |
N | 412 | S412S | agC | agT | 23 | 23 | B.1.1.486 | 0.036278 |
N | 412 | S412N | aGc | aAc | 23 | 23 | B.1.160 | 0.000717 |
N | 412 | S412N | aGc | aAc | 23 | 23 | P.1 | 0.000362 |
N | 412 | S412S | agC | agT | 22 | 22 | AY.54 | 0.002098 |
N | 412 | S412G | Agc | Ggc | 22 | 22 | B.1.36.38 | 0.036125 |
N | 412 | S412N | aGc | aAc | 22 | 22 | B.1.77 | 1 |
N | 412 | S412S | agC | agT | 21 | 21 | AY.114 | 0.004853 |
N | 412 | S412S | agC | agT | 20 | 20 | AY.85 | 0.008543 |
N | 412 | S412N | aGc | aAc | 20 | 20 | B.1.588 | 0.018198 |
N | 412 | S412I | aGc | aTc | 19 | 19 | AY.85 | 0.008116 |
N | 412 | S412S | agC | agT | 19 | 19 | AY.93 | 0.005188 |
N | 412 | S412S | agC | agT | 19 | 19 | AY.96 | 0.039419 |
N | 412 | S412S | agC | agT | 19 | 19 | B.1.405 | 0.234568 |
N | 412 | S412S | agC | agT | 19 | 19 | B.1.526 | 0.000447 |
N | 412 | S412G | Agc | Ggc | 18 | 18 | AY.44 | 0.00011 |
N | 412 | S412S | agC | agT | 18 | 18 | AY.91 | 0.013148 |
N | 412 | S412S | agC | agT | 18 | 18 | B.1.177.84 | 0.12 |
N | 412 | S412S | agC | agT | 18 | 18 | B.1.466.2 | 0.007042 |
N | 412 | S412C | Agc | Tgc | 17 | 17 | All | 0.000003 |
N | 412 | S412S | agC | agT | 17 | 17 | B.1.1.464 | 0.025037 |
N | 412 | S412S | agC | agT | 17 | 17 | B.1.243 | 0.001183 |
N | 412 | S412R | Agc | Cgc | 16 | 16 | AY.16 | 0.006074 |
N | 412 | S412S | agC | agT | 16 | 16 | AY.20 | 0.000622 |
N | 412 | S412S | agC | agT | 16 | 16 | AY.34 | 0.001551 |
N | 412 | S412S | agC | agT | 16 | 16 | AY.88 | 0.014147 |
N | 412 | S412N | aGc | aAc | 15 | 15 | AY.33 | 0.001002 |
N | 412 | S412S | agC | agT | 15 | 15 | AY.90 | 0.010267 |
N | 412 | S412N | aGc | aAc | 15 | 15 | B.1.2 | 0.000132 |
N | 412 | S412N | aGc | aAc | 15 | 15 | B.1.617.2 | 0.000056 |
N | 412 | S412S | agC | agT | 14 | 14 | AY.120 | 0.000521 |
N | 412 | S412I | aGc | aTc | 14 | 14 | AY.43 | 0.000062 |
N | 412 | S412R | Agc | Cgc | 13 | 14 | AY.43 | 0.000058 |
N | 412 | S412R | agC | agA | 1 | 14 | AY.43 | 0.000004 |
N | 412 | S412S | agC | agT | 14 | 14 | B.1.1.519 | 0.000556 |
N | 412 | S412L | AGc | CTc | 13 | 13 | All | 0.000002 |
N | 412 | S412T | aGc | aCc | 13 | 13 | All | 0.000002 |
N | 412 | S412L | AGc | CTc | 13 | 13 | AY.27 | 0.000841 |
N | 412 | S412S | agC | agT | 13 | 13 | AY.37 | 0.004109 |
N | 412 | S412S | agC | agT | 12 | 12 | AY.13 | 0.001932 |
N | 412 | S412I | aGc | aTc | 10 | 12 | AY.20 | 0.000389 |
N | 412 | S412I | aGC | aTT | 2 | 12 | AY.20 | 0.000078 |
N | 412 | S412N | aGc | aAc | 12 | 12 | AY.25 | 0.000072 |
N | 412 | S412S | agC | agT | 12 | 12 | AY.34.1 | 0.006119 |
N | 412 | S412S | agC | agT | 12 | 12 | AY.59 | 0.006356 |
N | 412 | S412R | Agc | Cgc | 12 | 12 | AY.74 | 0.001388 |
N | 412 | S412S | agC | agT | 12 | 12 | AY.75 | 0.000672 |
N | 412 | S412I | aGc | aTc | 12 | 12 | B.1.2 | 0.000106 |
N | 412 | S412S | agC | agT | 12 | 12 | Q.1 | 0.001516 |
N | 412 | S412S | agC | agT | 11 | 11 | AY.39.1 | 0.000436 |
N | 412 | S412G | Agc | Ggc | 11 | 11 | AY.4 | 0.000017 |
N | 412 | S412R | Agc | Cgc | 11 | 11 | AY.75.1 | 0.001983 |
N | 412 | S412R | agC | agA | 8 | 11 | B.1 | 0.000073 |
N | 412 | S412R | Agc | Cgc | 3 | 11 | B.1 | 0.000027 |
N | 412 | S412S | agC | agT | 11 | 11 | B.1.177.35 | 0.007602 |
N | 412 | S412W | AgC | TgG | 10 | 10 | All | 0.000002 |
N | 412 | S412N | aGc | aAc | 10 | 10 | AY.103 | 0.000062 |
N | 412 | S412R | Agc | Cgc | 10 | 10 | AY.47 | 0.000311 |
N | 412 | S412G | Agc | Ggc | 10 | 10 | AY.69 | 0.001867 |
N | 412 | S412S | agC | agT | 10 | 10 | AY.99.2 | 0.000922 |
N | 412 | S412S | agC | agT | 10 | 10 | B.1.351 | 0.000297 |
N | 412 | S412W | AgC | TgG | 10 | 10 | P.1 | 0.000158 |
N | 412 | S412S | agC | agT | 9 | 9 | AY.29 | 0.000142 |
N | 412 | S412S | agC | agT | 9 | 9 | AY.32 | 0.004792 |
N | 412 | S412S | agC | agT | 9 | 9 | AY.58 | 0.008167 |
N | 412 | S412S | agC | agT | 9 | 9 | AY.7 | 0.001764 |
N | 412 | S412S | agC | agT | 9 | 9 | AY.71 | 0.004276 |
N | 412 | S412N | aGc | aAc | 9 | 9 | AY.75 | 0.000504 |
N | 412 | S412N | aGc | aAc | 9 | 9 | B.1 | 0.000082 |
N | 412 | S412I | aGc | aTc | 9 | 9 | B.1.351 | 0.000268 |
N | 412 | S412S | agC | agT | 9 | 9 | B.1.497 | 0.002833 |
N | 412 | S412R | agC | agG | 8 | 8 | AY.120.1 | 0.002568 |
N | 412 | S412R | Agc | Cgc | 8 | 8 | AY.20 | 0.000311 |
N | 412 | S412S | agC | agT | 8 | 8 | AY.38 | 0.003994 |
N | 412 | S412S | agC | agT | 8 | 8 | AY.41 | 0.002352 |
N | 412 | S412S | agC | agT | 8 | 8 | AY.63 | 0.003095 |
N | 412 | S412S | agC | agT | 8 | 8 | AY.69 | 0.001493 |
N | 412 | S412I | aGc | aTc | 8 | 8 | B.1 | 0.000073 |
N | 412 | S412G | Agc | Ggc | 8 | 8 | B.1.1.7 | 0.000007 |
N | 412 | S412S | agC | agT | 8 | 8 | B.1.160 | 0.00025 |
N | 412 | S412G | Agc | Ggc | 7 | 8 | B.1.617.2 | 0.000026 |
N | 412 | S412G | AgC | GgA | 1 | 8 | B.1.617.2 | 0.000004 |
N | 412 | S412V | AGc | GTc | 7 | 7 | All | 0.000001 |
N | 412 | S412S | agC | agT | 7 | 7 | AY.108 | 0.007718 |
N | 412 | S412R | Agc | Cgc | 4 | 7 | AY.25 | 0.000024 |
N | 412 | S412R | agC | agA | 3 | 7 | AY.25 | 0.000018 |
N | 412 | S412I | aGC | aTT | 7 | 7 | AY.3 | 0.00007 |
N | 412 | S412V | AGc | GTc | 7 | 7 | AY.44 | 0.000043 |
N | 412 | S412S | agC | agT | 7 | 7 | AY.46.2 | 0.004447 |
N | 412 | S412S | agC | agT | 7 | 7 | AY.46.4 | 0.001152 |
N | 412 | S412S | agC | agT | 7 | 7 | AY.9.2 | 0.000257 |
N | 412 | S412G | Agc | Ggc | 7 | 7 | B.1.1.525 | 0.038251 |
N | 412 | S412N | aGc | aAc | 7 | 7 | B.1.311 | 0.001922 |
N | 412 | S412S | agC | agT | 7 | 7 | B.1.429 | 0.000165 |
N | 412 | S412S | agC | agT | 7 | 7 | B.1.596 | 0.00061 |
N | 412 | S412S | agC | agT | 7 | 7 | B.6.6 | 0.006222 |
N | 412 | S412I | aGc | aTc | 7 | 7 | C.37 | 0.000812 |
N | 412 | S412I | aGc | aTc | 6 | 6 | AY.109 | 0.004438 |
N | 412 | S412R | Agc | Cgc | 6 | 6 | AY.26 | 0.00017 |
N | 412 | S412I | aGc | aTc | 6 | 6 | AY.4.2.1 | 0.000894 |
N | 412 | S412S | agC | agT | 6 | 6 | AY.61 | 0.000629 |
N | 412 | S412S | agC | agT | 6 | 6 | AY.74 | 0.000694 |
N | 412 | S412I | aGc | aTc | 6 | 6 | B.1.1.176 | 0.002636 |
N | 412 | S412S | agC | agT | 6 | 6 | B.1.1.222 | 0.001224 |
N | 412 | S412I | aGc | aTc | 6 | 6 | B.1.526 | 0.000141 |
N | 412 | S412K | aGC | aAA | 3 | 5 | All | 0.000001 |
N | 412 | S412K | aGC | aAG | 2 | 5 | All | 0 |
N | 412 | S412S | agC | agT | 5 | 5 | AY.111 | 0.000916 |
N | 412 | S412I | aGc | aTc | 5 | 5 | AY.39 | 0.000124 |
N | 412 | S412R | agC | agG | 5 | 5 | AY.4 | 0.000008 |
N | 412 | S412I | aGc | aTc | 5 | 5 | AY.46.6 | 0.000361 |
N | 412 | S412R | Agc | Cgc | 5 | 5 | AY.62 | 0.002179 |
N | 412 | S412S | agC | agT | 5 | 5 | AY.68 | 0.001369 |
N | 412 | S412I | aGc | aTc | 5 | 5 | AY.98 | 0.000395 |
N | 412 | S412N | aGc | aAc | 5 | 5 | AY.99.2 | 0.000461 |
N | 412 | S412S | agC | agT | 5 | 5 | B.1.1.317 | 0.002058 |
N | 412 | S412S | agC | agT | 5 | 5 | B.1.1.63 | 0.001929 |
N | 412 | S412S | agC | agT | 5 | 5 | B.1.221 | 0.000355 |
N | 412 | S412N | aGc | aAc | 5 | 5 | B.1.234 | 0.00066 |
N | 412 | S412S | agC | agT | 5 | 5 | B.1.258 | 0.000333 |
N | 412 | S412S | agC | agT | 5 | 5 | D.2 | 0.000375 |
N | 412 | S412D | AGc | GAc | 2 | 4 | All | 0 |
N | 412 | S412del1 | Agc | -gc | 2 | 4 | All | 0 |
N | 412 | S412D | AGC | GAT | 2 | 4 | All | 0 |
N | 412 | S412del1 | agC | ag- | 1 | 4 | All | 0 |
N | 412 | S412del1 | aGc | a-c | 1 | 4 | All | 0 |
N | 412 | S412R | agC | agA | 4 | 4 | AY.103 | 0.000025 |
N | 412 | S412I | aGc | aTc | 4 | 4 | AY.103 | 0.000025 |
N | 412 | S412S | agC | agT | 4 | 4 | AY.109 | 0.002959 |
N | 412 | S412I | aGc | aTc | 4 | 4 | AY.119 | 0.000141 |
N | 412 | S412G | AgC | GgT | 4 | 4 | AY.3.1 | 0.000341 |
N | 412 | S412C | Agc | Tgc | 4 | 4 | AY.4 | 0.000006 |
N | 412 | S412N | aGc | aAc | 4 | 4 | AY.4.2 | 0.000087 |
N | 412 | S412S | agC | agT | 4 | 4 | AY.4.2.1 | 0.000596 |
N | 412 | S412S | agC | agT | 4 | 4 | AY.4.3 | 0.003367 |
N | 412 | S412S | agC | agT | 4 | 4 | AY.53 | 0.00115 |
N | 412 | S412S | agC | agT | 4 | 4 | AY.6 | 0.000165 |
N | 412 | S412N | aGc | aAc | 4 | 4 | AY.74 | 0.000463 |
N | 412 | S412S | agC | agT | 4 | 4 | AY.75.1 | 0.000721 |
N | 412 | S412I | aGc | aTc | 4 | 4 | AY.81 | 0.007968 |
N | 412 | S412R | Agc | Cgc | 4 | 4 | AY.9 | 0.00027 |
N | 412 | S412I | aGc | aTc | 4 | 4 | B.1.1 | 0.000073 |
N | 412 | S412N | aGc | aAc | 3 | 4 | B.1.1 | 0.000054 |
N | 412 | S412N | aGC | aAT | 1 | 4 | B.1.1 | 0.000018 |
N | 412 | S412I | aGc | aTc | 4 | 4 | B.1.1.174 | 0.013514 |
N | 412 | S412S | agC | agT | 4 | 4 | B.1.1.214 | 0.000222 |
N | 412 | S412S | agC | agT | 4 | 4 | B.1.1.312 | 0.007648 |
N | 412 | S412S | agC | agT | 4 | 4 | B.1.1.33 | 0.001684 |
N | 412 | S412S | agC | agT | 4 | 4 | B.1.111 | 0.0047 |
N | 412 | S412S | agC | agT | 4 | 4 | B.1.177.42 | 0.003578 |
N | 412 | S412R | agC | agA | 3 | 4 | B.1.2 | 0.000026 |
N | 412 | S412R | Agc | Cgc | 1 | 4 | B.1.2 | 0.000009 |
N | 412 | S412I | aGc | aTc | 4 | 4 | B.1.221 | 0.000284 |
N | 412 | S412S | agC | agT | 4 | 4 | C.36.3 | 0.002269 |
N | 412 | S412I | aGc | aTc | 4 | 4 | P.1 | 0.000063 |
N | 412 | S412N | aGc | aAc | 4 | 4 | P.1.17 | 0.000647 |
N | 412 | S412S | agC | agT | 4 | 4 | P.1.2 | 0.004624 |
N | 412 | S412S | agC | agT | 4 | 4 | P.2 | 0.000747 |
N | 412 | S412S | agC | agT | 3 | 3 | AY.10 | 0.00159 |
N | 412 | S412I | aGc | aTc | 3 | 3 | AY.117 | 0.000254 |
N | 412 | S412S | agC | agT | 3 | 3 | AY.121 | 0.000406 |
N | 412 | S412G | Agc | Ggc | 3 | 3 | AY.20 | 0.000117 |
N | 412 | S412C | Agc | Tgc | 3 | 3 | AY.25 | 0.000018 |
N | 412 | S412I | aGc | aTc | 3 | 3 | AY.26 | 0.000085 |
N | 412 | S412C | Agc | Tgc | 3 | 3 | AY.29 | 0.000047 |
N | 412 | S412G | Agc | Ggc | 2 | 3 | AY.33 | 0.000134 |
N | 412 | S412G | AgC | GgT | 1 | 3 | AY.33 | 0.000067 |
N | 412 | S412S | agC | agT | 3 | 3 | AY.4.5 | 0.000322 |
N | 412 | S412S | agC | agT | 3 | 3 | AY.5.4 | 0.00083 |
N | 412 | S412S | agC | agT | 3 | 3 | AY.57 | 0.001969 |
N | 412 | S412S | agC | agT | 3 | 3 | AY.64 | 0.001786 |
N | 412 | S412R | Agc | Cgc | 3 | 3 | AY.75 | 0.000168 |
N | 412 | S412R | agC | agA | 3 | 3 | AY.94 | 0.001328 |
N | 412 | S412G | Agc | Ggc | 2 | 3 | B.1.1 | 0.000036 |
N | 412 | S412G | AgC | GgT | 1 | 3 | B.1.1 | 0.000018 |
N | 412 | S412S | agC | agT | 3 | 3 | B.1.1.1 | 0.00098 |
N | 412 | S412S | agC | agT | 3 | 3 | B.1.1.28 | 0.000934 |
N | 412 | S412S | agC | agT | 3 | 3 | B.1.1.37 | 0.000579 |
N | 412 | S412S | agC | agT | 3 | 3 | B.1.139 | 0.002199 |
N | 412 | S412T | aGc | aCc | 3 | 3 | B.1.2 | 0.000026 |
N | 412 | S412I | aGc | aTc | 3 | 3 | B.1.243 | 0.000209 |
N | 412 | S412N | aGc | aAc | 3 | 3 | B.1.243 | 0.000209 |
N | 412 | S412S | agC | agT | 3 | 3 | B.1.369 | 0.000856 |
N | 412 | S412I | aGc | aTc | 3 | 3 | B.1.427 | 0.000151 |
N | 412 | S412N | aGc | aAc | 3 | 3 | B.1.427 | 0.000151 |
N | 412 | S412S | agC | agT | 3 | 3 | B.1.517 | 0.001281 |
N | 412 | S412S | agC | agT | 3 | 3 | B.1.525 | 0.000339 |
N | 412 | S412T | aGc | aCc | 3 | 3 | B.1.617.2 | 0.000011 |
N | 412 | S412S | agC | agT | 3 | 3 | B.1.621 | 0.000266 |
N | 412 | S412I | aGc | aTc | 3 | 3 | B.1.621.1 | 0.001517 |
N | 412 | S412I | aGc | aTc | 3 | 3 | P.1.14 | 0.000143 |
N | 412 | S412S | agC | agT | 3 | 3 | Q.8 | 0.000495 |
N | 412 | S412G | AgC | GgG | 1 | 2 | 0.055556 | |
N | 412 | S412G | Agc | Ggc | 1 | 2 | 0.055556 | |
N | 412 | S412R | agC | agA | 2 | 2 | A.1 | 0.000564 |
N | 412 | S412S | agC | agT | 2 | 2 | A.2.5 | 0.000998 |
N | 412 | S412S | agC | agT | 2 | 2 | A.23.1 | 0.001408 |
N | 412 | S412I | aGc | aTc | 2 | 2 | AH.3 | 0.007605 |
N | 412 | S412I | aGc | aTc | 2 | 2 | AY.110 | 0.000225 |
N | 412 | S412N | aGc | aAc | 2 | 2 | AY.119 | 0.000071 |
N | 412 | S412N | aGc | aAc | 2 | 2 | AY.121 | 0.000271 |
N | 412 | S412I | aGc | aTc | 2 | 2 | AY.121 | 0.000271 |
N | 412 | S412del | AGC | --- | 2 | 2 | AY.25 | 0.000012 |
N | 412 | S412N | aGc | aAc | 2 | 2 | AY.29 | 0.000032 |
N | 412 | S412S | agC | agT | 2 | 2 | AY.29.1 | 0.000441 |
N | 412 | S412G | AgC | GgT | 2 | 2 | AY.3 | 0.00002 |
N | 412 | S412R | Agc | Cgc | 2 | 2 | AY.39.1 | 0.000079 |
N | 412 | S412N | aGc | aAc | 2 | 2 | AY.39.1 | 0.000079 |
N | 412 | S412I | aGc | aTc | 2 | 2 | AY.45 | 0.000243 |
N | 412 | S412I | aGc | aTc | 2 | 2 | AY.47 | 0.000062 |
N | 412 | S412S | agC | agT | 2 | 2 | AY.48 | 0.00093 |
N | 412 | S412I | aGc | aTc | 2 | 2 | AY.64 | 0.00119 |
N | 412 | S412R | Agc | Cgc | 2 | 2 | AY.67 | 0.000929 |
N | 412 | S412S | agC | agT | 2 | 2 | AY.67 | 0.000929 |
N | 412 | S412S | agC | agT | 2 | 2 | AY.7.1 | 0.000225 |
N | 412 | S412S | agC | agT | 2 | 2 | AY.7.2 | 0.001119 |
N | 412 | S412I | aGc | aTc | 2 | 2 | AY.79 | 0.002421 |
N | 412 | S412S | agC | agT | 2 | 2 | AY.9 | 0.000135 |
N | 412 | S412S | agC | agT | 2 | 2 | AY.9.1 | 0.000167 |
N | 412 | S412I | aGc | aTc | 2 | 2 | AY.9.2 | 0.000073 |
N | 412 | S412I | aGc | aTc | 2 | 2 | AY.99.2 | 0.000184 |
N | 412 | S412G | Agc | Ggc | 2 | 2 | B.1 | 0.000018 |
N | 412 | S412del | AGC | --- | 2 | 2 | B.1 | 0.000018 |
N | 412 | S412del | AGC | --- | 2 | 2 | B.1.1 | 0.000036 |
N | 412 | S412D | AGC | GAT | 1 | 2 | B.1.1 | 0.000018 |
N | 412 | S412D | AGc | GAc | 1 | 2 | B.1.1 | 0.000018 |
N | 412 | S412R | agC | agA | 1 | 2 | B.1.1.1 | 0.000327 |
N | 412 | S412R | agC | agG | 1 | 2 | B.1.1.1 | 0.000327 |
N | 412 | S412S | agC | agT | 2 | 2 | B.1.1.10 | 0.00223 |
N | 412 | S412I | aGc | aTc | 2 | 2 | B.1.1.216 | 0.001781 |
N | 412 | S412I | aGc | aTc | 2 | 2 | B.1.1.231 | 0.006192 |
N | 412 | S412S | agC | agT | 2 | 2 | B.1.1.301 | 0.002358 |
N | 412 | S412N | aGc | aAc | 2 | 2 | B.1.1.317 | 0.000823 |
N | 412 | S412S | agC | agT | 2 | 2 | B.1.1.329 | 0.007692 |
N | 412 | S412S | agC | agT | 2 | 2 | B.1.1.398 | 0.006452 |
N | 412 | S412I | aGc | aTc | 2 | 2 | B.1.1.420 | 0.002012 |
N | 412 | S412S | agC | agT | 2 | 2 | B.1.1.420 | 0.002012 |
N | 412 | S412C | Agc | Tgc | 2 | 2 | B.1.1.7 | 0.000002 |
N | 412 | S412del1 | Agc | -gc | 1 | 2 | B.1.1.7 | 0.000001 |
N | 412 | S412del1 | aGc | a-c | 1 | 2 | B.1.1.7 | 0.000001 |
N | 412 | S412I | aGc | aTc | 2 | 2 | B.1.201 | 0.011364 |
N | 412 | S412S | agC | agT | 2 | 2 | B.1.234 | 0.000264 |
N | 412 | S412N | aGc | aAc | 2 | 2 | B.1.289 | 0.005319 |
N | 412 | S412R | Agc | Cgc | 2 | 2 | B.1.351 | 0.000059 |
N | 412 | S412S | agC | agT | 2 | 2 | B.1.36 | 0.000292 |
N | 412 | S412S | agC | agT | 2 | 2 | B.1.36.29 | 0.001035 |
N | 412 | S412K | aGC | aAA | 2 | 2 | B.1.429 | 0.000047 |
N | 412 | S412N | aGc | aAc | 2 | 2 | B.1.438.1 | 0.000215 |
N | 412 | S412S | agC | agT | 2 | 2 | B.1.438.1 | 0.000215 |
N | 412 | S412S | agC | agT | 2 | 2 | B.1.453 | 0.006472 |
N | 412 | S412S | agC | agT | 2 | 2 | B.1.474 | 0.003802 |
N | 412 | S412S | agC | agT | 2 | 2 | B.1.560 | 0.009259 |
N | 412 | S412S | agC | agT | 2 | 2 | B.1.575.1 | 0.004878 |
N | 412 | S412S | agC | agT | 2 | 2 | B.1.576 | 0.001813 |
N | 412 | S412I | aGc | aTc | 2 | 2 | B.1.577 | 0.001375 |
N | 412 | S412S | agC | agT | 2 | 2 | B.1.588 | 0.00182 |
N | 412 | S412N | aGc | aAc | 2 | 2 | B.1.595 | 0.000522 |
N | 412 | S412N | aGc | aAc | 2 | 2 | B.1.596 | 0.000174 |
N | 412 | S412R | agC | agA | 2 | 2 | B.1.596 | 0.000174 |
N | 412 | S412I | aGc | aTc | 2 | 2 | B.1.596 | 0.000174 |
N | 412 | S412S | agC | agT | 2 | 2 | B.1.604 | 0.034483 |
N | 412 | S412del | AGC | --- | 2 | 2 | B.1.617.2 | 0.000008 |
N | 412 | S412I | aGc | aTc | 2 | 2 | B.1.617.3 | 0.00597 |
N | 412 | S412S | agC | agT | 2 | 2 | B.1.619 | 0.001742 |
N | 412 | S412S | agC | agT | 2 | 2 | B.1.628 | 0.000705 |
N | 412 | S412S | agC | agT | 2 | 2 | C.36 | 0.001821 |
N | 412 | S412I | aGc | aTc | 2 | 2 | N.4 | 0.008511 |
N | 412 | S412del | AGC | --- | 2 | 2 | P.1 | 0.000032 |
N | 412 | S412N | aGc | aAc | 1 | 1 | 0.055556 | |
N | 412 | S412R | agC | agG | 1 | 1 | 0.055556 | |
N | 412 | S412D | AGc | GAc | 1 | 1 | 0.055556 | |
N | 412 | S412K | aGC | aAG | 1 | 1 | 0.055556 | |
N | 412 | S412E | AGC | GAG | 1 | 1 | 0.055556 | |
N | 412 | S412S | agC | agT | 1 | 1 | A.19 | 0.009434 |
N | 412 | S412R | agC | agA | 1 | 1 | A.2.5 | 0.000499 |
N | 412 | S412S | agC | agT | 1 | 1 | AD.2 | 0.000219 |
N | 412 | S412del2 | aGC | a-- | 1 | 1 | All | 0 |
N | 412 | S412E | AGC | GAG | 1 | 1 | All | 0 |
N | 412 | S412N | aGc | aAc | 1 | 1 | AW.1 | 0.003049 |
N | 412 | S412S | agC | agT | 1 | 1 | AY.1 | 0.000396 |
N | 412 | S412S | agC | agT | 1 | 1 | AY.101 | 0.00049 |
N | 412 | S412G | Agc | Ggc | 1 | 1 | AY.102 | 0.000027 |
N | 412 | S412C | Agc | Tgc | 1 | 1 | AY.103 | 0.000006 |
N | 412 | S412G | Agc | Ggc | 1 | 1 | AY.103 | 0.000006 |
N | 412 | S412S | agC | agT | 1 | 1 | AY.107 | 0.000466 |
N | 412 | S412I | aGc | aTc | 1 | 1 | AY.111 | 0.000183 |
N | 412 | S412R | Agc | Cgc | 1 | 1 | AY.113 | 0.000142 |
N | 412 | S412del | AGC | --- | 1 | 1 | AY.114 | 0.000231 |
N | 412 | S412I | aGc | aTc | 1 | 1 | AY.114 | 0.000231 |
N | 412 | S412I | aGc | aTc | 1 | 1 | AY.118 | 0.000063 |
N | 412 | S412N | aGc | aAc | 1 | 1 | AY.120 | 0.000037 |
N | 412 | S412I | aGc | aTc | 1 | 1 | AY.120 | 0.000037 |
N | 412 | S412S | agC | agT | 1 | 1 | AY.120.1 | 0.000321 |
N | 412 | S412S | agC | agT | 1 | 1 | AY.120.2.1 | 0.000498 |
N | 412 | S412N | aGc | aAc | 1 | 1 | AY.13 | 0.000161 |
N | 412 | S412S | agC | agT | 1 | 1 | AY.14 | 0.000088 |
N | 412 | S412I | aGc | aTc | 1 | 1 | AY.16 | 0.00038 |
N | 412 | S412S | agC | agT | 1 | 1 | AY.16 | 0.00038 |
N | 412 | S412N | aGc | aAc | 1 | 1 | AY.23 | 0.00007 |
N | 412 | S412S | agC | agT | 1 | 1 | AY.24 | 0.000431 |
N | 412 | S412G | Agc | Ggc | 1 | 1 | AY.25 | 0.000006 |
N | 412 | S412N | aGc | aAc | 1 | 1 | AY.26 | 0.000028 |
N | 412 | S412del | AGC | --- | 1 | 1 | AY.26 | 0.000028 |
N | 412 | S412I | aGc | aTc | 1 | 1 | AY.29 | 0.000016 |
N | 412 | S412T | aGc | aCc | 1 | 1 | AY.29 | 0.000016 |
N | 412 | S412N | aGC | aAT | 1 | 1 | AY.3 | 0.00001 |
N | 412 | S412I | aGc | aTc | 1 | 1 | AY.33 | 0.000067 |
N | 412 | S412del1 | agC | ag- | 1 | 1 | AY.33 | 0.000067 |
N | 412 | S412T | aGc | aCc | 1 | 1 | AY.33 | 0.000067 |
N | 412 | S412N | aGc | aAc | 1 | 1 | AY.34.1 | 0.00051 |
N | 412 | S412S | agC | agT | 1 | 1 | AY.35 | 0.000233 |
N | 412 | S412R | Agc | Cgc | 1 | 1 | AY.36 | 0.000148 |
N | 412 | S412I | aGc | aTc | 1 | 1 | AY.37 | 0.000316 |
N | 412 | S412G | Agc | Ggc | 1 | 1 | AY.39 | 0.000025 |
N | 412 | S412R | Agc | Cgc | 1 | 1 | AY.39 | 0.000025 |
N | 412 | S412T | aGc | aCc | 1 | 1 | AY.39 | 0.000025 |
N | 412 | S412del | AGC | --- | 1 | 1 | AY.4 | 0.000002 |
N | 412 | S412G | Agc | Ggc | 1 | 1 | AY.4.2 | 0.000022 |
N | 412 | S412I | aGc | aTc | 1 | 1 | AY.4.4 | 0.000409 |
N | 412 | S412G | Agc | Ggc | 1 | 1 | AY.4.5 | 0.000107 |
N | 412 | S412I | aGc | aTc | 1 | 1 | AY.40 | 0.000964 |
N | 412 | S412I | aGc | aTc | 1 | 1 | AY.42 | 0.00004 |
N | 412 | S412G | Agc | Ggc | 1 | 1 | AY.43 | 0.000004 |
N | 412 | S412N | aGc | aAc | 1 | 1 | AY.43 | 0.000004 |
N | 412 | S412C | Agc | Tgc | 1 | 1 | AY.43 | 0.000004 |
N | 412 | S412T | aGc | aCc | 1 | 1 | AY.43 | 0.000004 |
N | 412 | S412del | AGC | --- | 1 | 1 | AY.43 | 0.000004 |
N | 412 | S412R | agC | agA | 1 | 1 | AY.44 | 0.000006 |
N | 412 | S412G | Agc | Ggc | 1 | 1 | AY.45 | 0.000122 |
N | 412 | S412S | agC | agT | 1 | 1 | AY.46.3 | 0.000934 |
N | 412 | S412del | AGC | --- | 1 | 1 | AY.47 | 0.000031 |
N | 412 | S412I | aGc | aTc | 1 | 1 | AY.48 | 0.000465 |
N | 412 | S412I | aGc | aTc | 1 | 1 | AY.5 | 0.000021 |
N | 412 | S412N | aGc | aAc | 1 | 1 | AY.5.3 | 0.000337 |
N | 412 | S412I | aGc | aTc | 1 | 1 | AY.50 | 0.000799 |
N | 412 | S412S | agC | agT | 1 | 1 | AY.52 | 0.000814 |
N | 412 | S412I | aGc | aTc | 1 | 1 | AY.55 | 0.000917 |
N | 412 | S412I | aGc | aTc | 1 | 1 | AY.56 | 0.001605 |
N | 412 | S412I | aGc | aTc | 1 | 1 | AY.6 | 0.000041 |
N | 412 | S412N | aGc | aAc | 1 | 1 | AY.6 | 0.000041 |
N | 412 | S412R | Agc | Cgc | 1 | 1 | AY.61 | 0.000105 |
N | 412 | S412del | AGC | --- | 1 | 1 | AY.62 | 0.000436 |
N | 412 | S412S | agC | agT | 1 | 1 | AY.65 | 0.000533 |
N | 412 | S412N | aGc | aAc | 1 | 1 | AY.69 | 0.000187 |
N | 412 | S412N | aGc | aAc | 1 | 1 | AY.7.1 | 0.000113 |
N | 412 | S412S | agC | agT | 1 | 1 | AY.70 | 0.000209 |
N | 412 | S412I | aGc | aTc | 1 | 1 | AY.71 | 0.000475 |
N | 412 | S412N | aGc | aAc | 1 | 1 | AY.8 | 0.000606 |
N | 412 | S412I | aGc | aTc | 1 | 1 | AY.84 | 0.000437 |
N | 412 | S412I | aGc | aTc | 1 | 1 | AY.86 | 0.00083 |
N | 412 | S412S | agC | agT | 1 | 1 | AY.87 | 0.000833 |
N | 412 | S412S | agC | agT | 1 | 1 | AY.89 | 0.004902 |
N | 412 | S412I | aGc | aTc | 1 | 1 | AY.9 | 0.000068 |
N | 412 | S412I | aGc | aTc | 1 | 1 | AY.90 | 0.000684 |
N | 412 | S412I | aGc | aTc | 1 | 1 | AY.98.1 | 0.000048 |
N | 412 | S412S | agC | agT | 1 | 1 | AZ.3 | 0.00152 |
N | 412 | S412R | agC | agA | 1 | 1 | B | 0.000128 |
N | 412 | S412I | aGc | aTc | 1 | 1 | B | 0.000128 |
N | 412 | S412T | aGc | aCc | 1 | 1 | B.1 | 0.000009 |
N | 412 | S412T | aGc | aCc | 1 | 1 | B.1.1 | 0.000018 |
N | 412 | S412N | aGc | aAc | 1 | 1 | B.1.1.1 | 0.000327 |
N | 412 | S412I | aGc | aTc | 1 | 1 | B.1.1.1 | 0.000327 |
N | 412 | S412C | Agc | Tgc | 1 | 1 | B.1.1.132 | 0.014925 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.1.153 | 0.001095 |
N | 412 | S412N | aGc | aAc | 1 | 1 | B.1.1.153 | 0.001095 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.1.174 | 0.003378 |
N | 412 | S412I | aGc | aTc | 1 | 1 | B.1.1.214 | 0.000055 |
N | 412 | S412I | aGc | aTc | 1 | 1 | B.1.1.232 | 0.001815 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.1.25 | 0.000569 |
N | 412 | S412I | aGc | aTc | 1 | 1 | B.1.1.25 | 0.000569 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.1.258 | 0.003257 |
N | 412 | S412N | aGc | aAc | 1 | 1 | B.1.1.27 | 0.00565 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.1.273 | 0.006757 |
N | 412 | S412N | aGc | aAc | 1 | 1 | B.1.1.274 | 0.005051 |
N | 412 | S412G | Agc | Ggc | 1 | 1 | B.1.1.291 | 0.000742 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.1.306 | 0.000438 |
N | 412 | S412G | Agc | Ggc | 1 | 1 | B.1.1.318 | 0.000302 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.1.351 | 0.002793 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.1.354 | 0.004386 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.1.368 | 0.003086 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.1.369 | 0.000446 |
N | 412 | S412del | AGC | --- | 1 | 1 | B.1.1.37 | 0.000193 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.1.409 | 0.002833 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.1.434 | 0.000349 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.1.51 | 0.001718 |
N | 412 | S412I | aGc | aTc | 1 | 1 | B.1.1.519 | 0.00004 |
N | 412 | S412N | aGc | aAc | 1 | 1 | B.1.1.519 | 0.00004 |
N | 412 | S412N | aGc | aAc | 1 | 1 | B.1.1.63 | 0.000386 |
N | 412 | S412del | AGC | --- | 1 | 1 | B.1.1.7 | 0.000001 |
N | 412 | S412N | aGc | aAc | 1 | 1 | B.1.1.70 | 0.000341 |
N | 412 | S412I | aGc | aTc | 1 | 1 | B.1.128 | 0.000635 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.157 | 0.002985 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.160.16 | 0.000929 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.160.29 | 0.004219 |
N | 412 | S412del | AGC | --- | 1 | 1 | B.1.162 | 0.005025 |
N | 412 | S412R | agC | agG | 1 | 1 | B.1.177 | 0.000013 |
N | 412 | S412N | aGc | aAc | 1 | 1 | B.1.177.21 | 0.000076 |
N | 412 | S412del1 | Agc | -gc | 1 | 1 | B.1.177.21 | 0.000076 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.177.21 | 0.000076 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.177.33 | 0.001645 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.177.43 | 0.001477 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.177.44 | 0.000519 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.177.54 | 0.000606 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.177.57 | 0.000281 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.177.60 | 0.000218 |
N | 412 | S412K | aGC | aAA | 1 | 1 | B.1.177.63 | 0.002703 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.177.7 | 0.000165 |
N | 412 | S412R | agC | agA | 1 | 1 | B.1.177.73 | 0.000566 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.177.79 | 0.002342 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.177.81 | 0.000189 |
N | 412 | S412N | aGc | aAc | 1 | 1 | B.1.177.86 | 0.000183 |
N | 412 | S412G | Agc | Ggc | 1 | 1 | B.1.177.86 | 0.000183 |
N | 412 | S412K | aGC | aAG | 1 | 1 | B.1.177.86 | 0.000183 |
N | 412 | S412R | agC | agG | 1 | 1 | B.1.177.86 | 0.000183 |
N | 412 | S412I | aGc | aTc | 1 | 1 | B.1.179 | 0.003759 |
N | 412 | S412N | aGc | aAc | 1 | 1 | B.1.182 | 0.007246 |
N | 412 | S412G | Agc | Ggc | 1 | 1 | B.1.2 | 0.000009 |
N | 412 | S412del | AGC | --- | 1 | 1 | B.1.2 | 0.000009 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.206 | 0.000816 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.214.2 | 0.0006 |
N | 412 | S412G | Agc | Ggc | 1 | 1 | B.1.221 | 0.000071 |
N | 412 | S412C | Agc | Tgc | 1 | 1 | B.1.221 | 0.000071 |
N | 412 | S412I | aGc | aTc | 1 | 1 | B.1.234 | 0.000132 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.240 | 0.000216 |
N | 412 | S412N | aGc | aAc | 1 | 1 | B.1.241 | 0.000812 |
N | 412 | S412del | AGC | --- | 1 | 1 | B.1.258.16 | 0.001637 |
N | 412 | S412G | Agc | Ggc | 1 | 1 | B.1.284 | 0.013158 |
N | 412 | S412I | aGc | aTc | 1 | 1 | B.1.346 | 0.001311 |
N | 412 | S412N | aGc | aAc | 1 | 1 | B.1.351 | 0.00003 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.351.5 | 0.0006 |
N | 412 | S412N | aGc | aAc | 1 | 1 | B.1.36.1 | 0.00114 |
N | 412 | S412I | aGc | aTc | 1 | 1 | B.1.36.17 | 0.000494 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.36.18 | 0.00042 |
N | 412 | S412R | Agc | Cgc | 1 | 1 | B.1.36.18 | 0.00042 |
N | 412 | S412N | aGc | aAc | 1 | 1 | B.1.36.29 | 0.000517 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.36.8 | 0.001 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.362 | 0.001541 |
N | 412 | S412I | aGc | aTc | 1 | 1 | B.1.362 | 0.001541 |
N | 412 | S412N | aGc | aAc | 1 | 1 | B.1.391 | 0.001127 |
N | 412 | S412N | aGc | aAc | 1 | 1 | B.1.396 | 0.000706 |
N | 412 | S412del | AGC | --- | 1 | 1 | B.1.415 | 0.014286 |
N | 412 | S412del | AGC | --- | 1 | 1 | B.1.427 | 0.00005 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.428 | 0.00102 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.436 | 0.001029 |
N | 412 | S412del | AGC | --- | 1 | 1 | B.1.438.1 | 0.000107 |
N | 412 | S412G | Agc | Ggc | 1 | 1 | B.1.456 | 0.003268 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.469 | 0.00361 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.470 | 0.001404 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.485 | 0.014925 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.509 | 0.000866 |
N | 412 | S412N | aGc | aAc | 1 | 1 | B.1.517 | 0.000427 |
N | 412 | S412del | AGC | --- | 1 | 1 | B.1.526 | 0.000024 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.546 | 0.003704 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.564 | 0.000426 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.580 | 0.004065 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.586 | 0.010989 |
N | 412 | S412del | AGC | --- | 1 | 1 | B.1.596 | 0.000087 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.600 | 0.005848 |
N | 412 | S412R | Agc | Cgc | 1 | 1 | B.1.604 | 0.017241 |
N | 412 | S412N | aGc | aAc | 1 | 1 | B.1.609 | 0.000479 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.617.1 | 0.000129 |
N | 412 | S412G | Agc | Ggc | 1 | 1 | B.1.617.1 | 0.000129 |
N | 412 | S412C | Agc | Tgc | 1 | 1 | B.1.617.2 | 0.000004 |
N | 412 | S412D | AGC | GAT | 1 | 1 | B.1.617.2 | 0.000004 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.620 | 0.000946 |
N | 412 | S412N | aGc | aAc | 1 | 1 | B.1.621 | 0.000089 |
N | 412 | S412I | aGc | aTc | 1 | 1 | B.1.621 | 0.000089 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.623 | 0.000536 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.625 | 0.002353 |
N | 412 | S412N | aGc | aAc | 1 | 1 | B.1.637 | 0.000073 |
N | 412 | S412I | aGc | aTc | 1 | 1 | B.1.637 | 0.000073 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.637 | 0.000073 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.78 | 0.008547 |
N | 412 | S412S | agC | agT | 1 | 1 | B.1.8 | 0.001972 |
N | 412 | S412S | agC | agT | 1 | 1 | B.28 | 0.003279 |
N | 412 | S412T | aGc | aCc | 1 | 1 | B.3 | 0.000831 |
N | 412 | S412S | agC | agT | 1 | 1 | B.4 | 0.002208 |
N | 412 | S412S | agC | agT | 1 | 1 | B.40 | 0.000364 |
N | 412 | S412R | Agc | Cgc | 1 | 1 | B.40 | 0.000364 |
N | 412 | S412S | agC | agT | 1 | 1 | B.52 | 0.010101 |
N | 412 | S412N | aGc | aAc | 1 | 1 | B.55 | 0.00295 |
N | 412 | S412I | aGC | aTT | 1 | 1 | C.1 | 0.002392 |
N | 412 | S412S | agC | agT | 1 | 1 | C.1.1 | 0.076923 |
N | 412 | S412S | agC | agT | 1 | 1 | C.18 | 0.002591 |
N | 412 | S412G | Agc | Ggc | 1 | 1 | C.35 | 0.000774 |
N | 412 | S412G | Agc | Ggc | 1 | 1 | C.36 | 0.000911 |
N | 412 | S412R | agC | agA | 1 | 1 | C.36.3 | 0.000567 |
N | 412 | S412N | aGc | aAc | 1 | 1 | C.37 | 0.000116 |
N | 412 | S412S | agC | agT | 1 | 1 | N.5 | 0.001767 |
N | 412 | S412del2 | aGC | a-- | 1 | 1 | P.1 | 0.000016 |
N | 412 | S412G | Agc | Ggc | 1 | 1 | P.1 | 0.000016 |
N | 412 | S412I | aGc | aTc | 1 | 1 | P.1.11 | 0.010204 |
N | 412 | S412N | aGc | aAc | 1 | 1 | P.1.12 | 0.000484 |
N | 412 | S412N | aGc | aAc | 1 | 1 | P.1.13 | 0.000898 |
N | 412 | S412N | aGc | aAc | 1 | 1 | P.1.14 | 0.000048 |
N | 412 | S412S | agC | agT | 1 | 1 | P.1.14 | 0.000048 |
N | 412 | S412G | Agc | Ggc | 1 | 1 | P.1.14 | 0.000048 |
N | 412 | S412S | agC | agT | 1 | 1 | P.1.15 | 0.000232 |
N | 412 | S412S | agC | agT | 1 | 1 | P.1.4 | 0.000977 |
N | 412 | S412R | agC | agA | 1 | 1 | P.2 | 0.000187 |
N | 412 | S412I | aGc | aTc | 1 | 1 | Q.3 | 0.000145 |
N | 412 | S412S | agC | agT | 1 | 1 | Q.5 | 0.016949 |
N | 412 | S412N | aGc | aAc | 1 | 1 | Q.8 | 0.000165 |
N | 412 | S412R | agC | agA | 1 | 1 | Q.8 | 0.000165 |
N | 412 | S412S | agC | agT | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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