CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 407

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N407L407LsynttGttA5493530.64298729492-29494
N407L407LsynTtgCtg5491960.35701329492-29494
N407L407deldelTTG---3232129492-29494
N407L407SnonsyntTgtCg31300.96774229492-29494
N407L407SnonsyntTGtCT3110.032258129492-29494
N407L407FnonsynttGttT26190.73076929492-29494
N407L407FnonsynttGttC2670.26923129492-29494
N407L407XnonsyntTgtAg88129492-29494
N407L407del2delTTg--g44129492-29494
N407L407VnonsynTtgGtg420.529492-29494
N407L407VnonsynTtGGtT410.2529492-29494
N407L407VnonsynTtGGtC410.2529492-29494
N407L407WnonsyntTgtGg33129492-29494
N407L407QnonsynTTgCAg33129492-29494
N407L407MnonsynTtgAtg33129492-29494
N407L407InonsynTtGAtC210.529492-29494
N407L407InonsynTtGAtT210.529492-29494
N407L407del1delttGtt-11129492-29494

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N407L407LttGttA353549All0.000068
N407L407LTtgCtg196549All0.000037
N407L407LttGttA115205B.1.1.70.000103
N407L407LTtgCtg90205B.1.1.70.000081
N407L407LttGttA113115AY.1030.000702
N407L407LTtgCtg2115AY.1030.000012
N407L407LttGttA4040B.1.240.11
N407L407LTtgCtg3737B.1.1600.001154
N407L407delTTG---3232All0.000006
N407L407StTgtCg3031All0.000006
N407L407StTGtCT131All0
N407L407FttGttT1926All0.000004
N407L407FttGttC726All0.000001
N407L407LttGttA1417B.1.617.20.000053
N407L407LTtgCtg317B.1.617.20.000011
N407L407StTgtCg1111B.1.1.70.00001
N407L407LttGttA59AY.40.000008
N407L407LTtgCtg49AY.40.000006
N407L407StTgtCg99B.1.5250.001018
N407L407LTtgCtg89P.10.000126
N407L407LttGttA19P.10.000016
N407L407XtTgtAg88All0.000002
N407L407LttGttA88AY.1000.000368
N407L407LTtgCtg67AY.250.000036
N407L407LttGttA17AY.250.000006
N407L407LttGttA66AY.30.00006
N407L407LttGttA56AY.4.2.10.000745
N407L407LTtgCtg16AY.4.2.10.000149
N407L407FttGttT56B.10.000046
N407L407FttGttC16B.10.000009
N407L407LttGttA66B.1.2410.00487
N407L407LttGttA35B.1.10.000054
N407L407LTtgCtg25B.1.10.000036
N407L407del2TTg--g44All0.000001
N407L407VTtgGtg24All0
N407L407VTtGGtC14All0
N407L407VTtGGtT14All0
N407L407LTtgCtg44AY.9.20.000147
N407L407LTtgCtg44B.10.000037
N407L407FttGttT34B.1.1.70.000003
N407L407FttGttC14B.1.1.70.000001
N407L407LttGttA24B.1.20.000018
N407L407LTtgCtg24B.1.20.000018
N407L407VTtGGtC130.055556
N407L407VTtGGtT130.055556
N407L407VTtgGtg130.055556
N407L407QTTgCAg33All0.000001
N407L407MTtgAtg33All0.000001
N407L407WtTgtGg33All0.000001
N407L407LttGttA23AY.1020.000053
N407L407LTtgCtg13AY.1020.000027
N407L407LTtgCtg23AY.430.000009
N407L407LttGttA13AY.430.000004
N407L407LttGttA23AY.440.000012
N407L407LTtgCtg13AY.440.000006
N407L407LTtgCtg23AY.50.000041
N407L407LttGttA13AY.50.000021
N407L407LttGttA33B.1.2580.0002
N407L407LTtgCtg33B.1.4220.002437
N407L407ITtGAtT120.055556
N407L407ITtGAtC120.055556
N407L407FttGttC120.055556
N407L407FttGttT120.055556
N407L407ITtGAtT12All0
N407L407ITtGAtC12All0
N407L407LttGttA22AY.10.000791
N407L407LTtgCtg22AY.1190.000071
N407L407LttGttA22AY.230.000139
N407L407delTTG---22AY.250.000012
N407L407LttGttA22AY.39.10.000079
N407L407QTTgCAg22AY.5.30.000675
N407L407LttGttA22AY.98.10.000097
N407L407LTtgCtg22B0.000256
N407L407StTgtCg12B0.000128
N407L407StTGtCT12B0.000128
N407L407delTTG---22B.10.000018
N407L407delTTG---22B.1.10.000036
N407L407LTtgCtg22B.1.1770.000026
N407L407LTtgCtg22B.1.177.620.002384
N407L407delTTG---22B.1.20.000018
N407L407FttGttT12B.1.20.000009
N407L407FttGttC12B.1.20.000009
N407L407LttGttA22B.1.3510.000059
N407L407delTTG---22B.1.617.20.000008
N407L407del2TTg--g22C.370.000232
N407L407delTTG---22P.10.000032
N407L407MTtgAtg110.055556
N407L407XtTgtAg11AD.20.000219
N407L407del1ttGtt-11All0
N407L407delTTG---11AY.1010.00049
N407L407FttGttT11AY.1020.000027
N407L407FttGttT11AY.1030.000006
N407L407StTgtCg11AY.1030.000006
N407L407XtTgtAg11AY.1030.000006
N407L407LTtgCtg11AY.1080.001103
N407L407delTTG---11AY.1140.000231
N407L407FttGttC11AY.1180.000063
N407L407QTTgCAg11AY.120.10.000321
N407L407FttGttC11AY.140.000088
N407L407LTtgCtg11AY.140.000088
N407L407delTTG---11AY.260.000028
N407L407LTtgCtg11AY.290.000016
N407L407del1ttGtt-11AY.30.00001
N407L407LTtgCtg11AY.3.10.000085
N407L407LTtgCtg11AY.320.000532
N407L407FttGttT11AY.40.000002
N407L407StTgtCg11AY.40.000002
N407L407delTTG---11AY.40.000002
N407L407LttGttA11AY.4.40.000409
N407L407delTTG---11AY.430.000004
N407L407LttGttA11AY.46.30.000934
N407L407FttGttC11AY.46.60.000072
N407L407delTTG---11AY.470.000031
N407L407LTtgCtg11AY.5.30.000337
N407L407XtTgtAg11AY.5.30.000337
N407L407LttGttA11AY.5.40.000277
N407L407LTtgCtg11AY.590.00053
N407L407LttGttA11AY.60.000041
N407L407delTTG---11AY.620.000436
N407L407MTtgAtg11AY.750.000056
N407L407delTTG---11AY.840.000437
N407L407del2TTg--g11AY.9.20.000037
N407L407LttGttA11AY.99.20.000092
N407L407FttGttT11B0.000128
N407L407VTtgGtg11B.10.000009
N407L407XtTgtAg11B.10.000009
N407L407StTgtCg11B.10.000009
N407L407FttGttT11B.1.10.000018
N407L407XtTgtAg11B.1.1.1390.022727
N407L407LttGttA11B.1.1.2000.007463
N407L407delTTG---11B.1.1.2360.006897
N407L407LttGttA11B.1.1.2540.011236
N407L407StTgtCg11B.1.1.270.00565
N407L407delTTG---11B.1.1.370.000193
N407L407LttGttA11B.1.1.390.00051
N407L407WtTgtGg11B.1.1.460.004367
N407L407WtTgtGg11B.1.1.70.000001
N407L407delTTG---11B.1.1.70.000001
N407L407XtTgtAg11B.1.1.70.000001
N407L407StTgtCg11B.1.1600.000031
N407L407delTTG---11B.1.1620.005025
N407L407delTTG---11B.1.1770.000013
N407L407LttGttA11B.1.177.210.000076
N407L407LTtgCtg11B.1.177.870.000728
N407L407LttGttA11B.1.2400.000216
N407L407WtTgtGg11B.1.2430.00007
N407L407StTgtCg11B.1.3050.002151
N407L407FttGttT11B.1.3050.002151
N407L407StTgtCg11B.1.3110.000275
N407L407LTtgCtg11B.1.3240.001605
N407L407MTtgAtg11B.1.3980.002976
N407L407LttGttA11B.1.3990.001934
N407L407XtTgtAg11B.1.4000.000429
N407L407delTTG---11B.1.4150.014286
N407L407delTTG---11B.1.4270.00005
N407L407delTTG---11B.1.438.10.000107
N407L407LTtgCtg11B.1.438.10.000107
N407L407LTtgCtg11B.1.4590.004082
N407L407delTTG---11B.1.5250.000113
N407L407LttGttA11B.1.5750.000303
N407L407FttGttT11B.1.5820.000491
N407L407delTTG---11B.1.5960.000087
N407L407LTtgCtg11B.1.6090.000479
N407L407StTgtCg11B.1.617.20.000004
N407L407delTTG---11B.1.617.30.002985
N407L407LTtgCtg11B.1.6210.000089
N407L407del2TTg--g11B.1.621.10.000506
N407L407StTgtCg11B.1.6360.006711
N407L407LTtgCtg11B.1.910.002075
N407L407LttGttA11C.370.000116
N407L407XtTgtAg11C.370.000116
N407L407delTTG---11C.370.000116
N407L407FttGttT11D.20.000075
N407L407FttGttT11P.10.000016
N407L407LTtgCtg11P.1.140.000048
N407L407LttGttA11Q.10.000126
N407L407LttGttA11Q.30.000145
N407L407LTtgCtg11Q.80.000165