CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 398 & Codon = gTa

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N398A398VnonsyngCagTa13552135470.99963129465-29467

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N398A398VgCagTa1354713552All0.002591
N398A398VgCagTa45124512AD.20.987957
N398A398VgCagTa44104411B.1.1.70.003948
N398A398VgCagTa719719AY.40.001119
N398A398VgCagTa307307B.1.5510.396129
N398A398VgCagTa306306B.10.002803
N398A398VgCagTa247247B.1.20.002175
N398A398VgCagTa241241AD.10.99177
N398A398VgCagTa167167B.1.1770.002199
N398A398VgCagTa166166AY.390.004102
N398A398VgCagTa150150B.1.617.20.000565
N398A398VgCagTa138138Q.80.022757
N398A398VgCagTa120120AY.1030.000745
N398A398VgCagTa118118B.1.10.002141
N398A398VgCagTa107107B.1.1.3170.044051
N398A398VgCagTa104104B.1.1.3150.881356
N398A398VgCagTa8686B.1.5260.002021
N398A398VgCagTa7979AY.250.000475
N398A398VgCagTa7272P.10.001134
N398A398VgCagTa5858B.1.3510.001724
N398A398VgCagTa5454AY.330.003606
N398A398VgCagTa5151AY.440.00031
N398A398VgCagTa4949AY.260.001387
N398A398VgCagTa4646AY.430.000204
N398A398VgCagTa4343B.1.1600.001341
N398A398VgCagTa3636B.1.1.5190.00143
N398A398VgCagTa3535B.1.2580.002329
N398A398VgCagTa3131AY.30.000308
N398A398VgCagTa3131B.1.4270.001565
N398A398VgCagTa2828AY.1020.000742
N398A398VgCagTa2626B.1.2340.003431
N398A398VgCagTa2525B.1.4290.000588
N398A398VgCagTa2424B.1.1.630.009259
N398A398VgCagTa2323B.1.2320.012359
N398A398VgCagTa2222AY.4.20.000477
N398A398VgCagTa2222B.1.2430.001531
N398A398VgCagTa2121AD.2.10.954545
N398A398VgCagTa2121AY.9.20.000771
N398A398VgCagTa2020AY.750.00112
N398A398VgCagTa2020B.1.6190.017422
N398A398VgCagTa1717B.1.1110.019976
N398A398VgCagTa1515AY.290.000237
N398A398VgCagTa1515AY.50.00031
N398A398VgCagTa1515B.1.5960.001307
N398A398VgCagTa1414B.1.2410.011364
N398A398VgCagTa1414B.1.5750.004248
N398A398VgCagTa1414B.1.6370.001023
N398A398VgCagTa1313AY.1180.000814
N398A398VgCagTa1313AY.1210.001759
N398A398VgCagTa1313AY.470.000404
N398A398VgCagTa1313B.1.1.250.007391
N398A398VgCagTa1212AY.230.000837
N398A398VgCagTa1111AY.350.002564
N398A398VgCagTa1111C.360.010018
N398A398VgCagTa1010AY.200.000389
N398A398VgCagTa1010B.1.1.3050.03861
N398A398VgCagTa1010B.1.351.20.003026
N398A398VgCagTa1010B.1.6230.005365
N398A398VgCagTa99AY.46.60.00065
N398A398VgCagTa99B.1.1.2700.092784
N398A398VgCagTa99B.1.1.4100.333333
N398A398VgCagTa99B.1.3350.092784
N398A398VgCagTa99B.1.6210.000797
N398A398VgCagTa88AY.5.10.030075
N398A398VgCagTa88AY.770.009019
N398A398VgCagTa88B.1.1.5260.028369
N398A398VgCagTa88B.1.360.001167
N398A398VgCagTa88B.1.36.290.004139
N398A398VgCagTa88B.1.5250.000905
N398A398VgCagTa88B.1.6280.002819
N398A398VgCagTa77AY.1110.001282
N398A398VgCagTa77AY.99.20.000645
N398A398VgCagTa77B.1.1.4271
N398A398VgCagTa77B.1.2210.000497
N398A398VgCagTa77B.1.36.170.003458
N398A398VgCagTa77B.1.4010.057377
N398A398VgCagTa77P.1.140.000335
N398A398VgCagTa66AY.1200.000223
N398A398VgCagTa66AY.270.000388
N398A398VgCagTa66AY.420.000241
N398A398VgCagTa66AY.9.10.000502
N398A398VgCagTa66B.1.36.180.002521
N398A398VgCagTa66B.1.3690.001711
N398A398VgCagTa66P.1.70.001916
N398A398VgCagTa55AY.1000.00023
N398A398VgCagTa55AY.1190.000177
N398A398VgCagTa55AY.160.001898
N398A398VgCagTa55AY.3.10.000426
N398A398VgCagTa55AY.300.001979
N398A398VgCagTa55AY.39.10.000198
N398A398VgCagTa55AY.4.30.004209
N398A398VgCagTa55AY.540.000477
N398A398VgCagTa55AY.98.10.000242
N398A398VgCagTa55B.1.1.1210.012136
N398A398VgCagTa55B.1.1.3060.002192
N398A398VgCagTa55B.1.177.770.003631
N398A398VgCagTa55B.1.177.800.00956
N398A398VgCagTa55B.1.177.860.000917
N398A398VgCagTa55C.370.00058
N398A398VgCagTa55P.1.150.001162
N398A398VgCagTa55Q.10.000632
N398A398VgCagTa240.111111
N398A398VgCagTa44AY.1170.000338
N398A398VgCagTa44AY.450.000487
N398A398VgCagTa44AY.550.00367
N398A398VgCagTa44B.1.1.2160.003562
N398A398VgCagTa44B.1.1.2220.000816
N398A398VgCagTa44B.1.4000.001716
N398A398VgCagTa44B.1.466.20.001565
N398A398VgCagTa44B.1.5640.001704
N398A398VgCagTa44B.1.5820.001963
N398A398VgCagTa44B.1.5950.001044
N398A398VgCagTa44D.20.0003
N398A398VgCagTa44P.20.000747
N398A398VgCagTa33A0.001161
N398A398VgCagTa33AE.80.001467
N398A398VgCagTa33AY.1130.000427
N398A398VgCagTa33AY.60.000123
N398A398VgCagTa33AY.610.000314
N398A398VgCagTa33AY.75.10.000541
N398A398VgCagTa33AY.940.001328
N398A398VgCagTa33B.1.1.2140.000166
N398A398VgCagTa33B.1.1.3690.001339
N398A398VgCagTa33B.1.1.4340.001046
N398A398VgCagTa33B.1.110.30.002155
N398A398VgCagTa33B.1.177.600.000655
N398A398VgCagTa33B.1.177.810.000568
N398A398VgCagTa33B.1.3960.002117
N398A398VgCagTa33B.1.5680.003333
N398A398VgCagTa33B.1.617.10.000387
N398A398VgCagTa33Q.60.019868
N398A398VgCagTa22AY.16.10.00094
N398A398VgCagTa22AY.29.10.000441
N398A398VgCagTa22AY.380.000999
N398A398VgCagTa22AY.4.40.000818
N398A398VgCagTa22AY.4.50.000215
N398A398VgCagTa22AY.46.40.000329
N398A398VgCagTa22AY.5.40.000553
N398A398VgCagTa22AY.620.000871
N398A398VgCagTa22AY.650.001066
N398A398VgCagTa22AY.670.000929
N398A398VgCagTa22AY.690.000373
N398A398VgCagTa22AY.920.000575
N398A398VgCagTa22AY.960.004149
N398A398VgCagTa22AY.980.000158
N398A398VgCagTa22B0.000256
N398A398VgCagTa22B.1.1.2840.000215
N398A398VgCagTa22B.1.1.3360.033333
N398A398VgCagTa22B.1.1.3980.006452
N398A398VgCagTa22B.1.1.460.008734
N398A398VgCagTa22B.1.1280.001271
N398A398VgCagTa22B.1.1390.001466
N398A398VgCagTa22B.1.177.570.000562
N398A398VgCagTa22B.1.2360.004107
N398A398VgCagTa22B.1.3230.041667
N398A398VgCagTa22B.1.3370.011173
N398A398VgCagTa22B.1.36.310.003503
N398A398VgCagTa22B.1.36.70.008
N398A398VgCagTa22B.1.3990.003868
N398A398VgCagTa22B.1.4330.00639
N398A398VgCagTa22B.1.4560.006536
N398A398VgCagTa22B.1.4680.011429
N398A398VgCagTa22B.1.4700.002809
N398A398VgCagTa22B.1.5610.000794
N398A398VgCagTa22B.1.6360.013423
N398A398VgCagTa22B.1.910.004149
N398A398VgCagTa22B.230.005848
N398A398VgCagTa22P.1.10.000635
N398A398VgCagTa22Q.40.00091
N398A398VgCagTa11A.20.000662
N398A398VgCagTa11A.280.002646
N398A398VgCagTa11AE.20.058824
N398A398VgCagTa11AM.40.003571
N398A398VgCagTa11AP.10.001502
N398A398VgCagTa11AS.20.015625
N398A398VgCagTa11AY.100.00053
N398A398VgCagTa11AY.1080.001103
N398A398VgCagTa11AY.1160.000287
N398A398VgCagTa11AY.116.10.000311
N398A398VgCagTa11AY.120.10.000321
N398A398VgCagTa11AY.120.2.10.000498
N398A398VgCagTa11AY.140.000088
N398A398VgCagTa11AY.220.002092
N398A398VgCagTa11AY.320.000532
N398A398VgCagTa11AY.340.000097
N398A398VgCagTa11AY.34.10.00051
N398A398VgCagTa11AY.370.000316
N398A398VgCagTa11AY.4.10.000737
N398A398VgCagTa11AY.460.000104
N398A398VgCagTa11AY.490.003195
N398A398VgCagTa11AY.5.20.002463
N398A398VgCagTa11AY.5.30.000337
N398A398VgCagTa11AY.520.000814
N398A398VgCagTa11AY.530.000288
N398A398VgCagTa11AY.70.000196
N398A398VgCagTa11AY.7.10.000113
N398A398VgCagTa11AY.720.001361
N398A398VgCagTa11AY.730.000665
N398A398VgCagTa11AY.740.000116
N398A398VgCagTa11AY.800.001129
N398A398VgCagTa11AY.820.001357
N398A398VgCagTa11AY.99.10.001553
N398A398VgCagTa11AZ.10.000867
N398A398VgCagTa11B.1.1.10.000327
N398A398VgCagTa11B.1.1.1610.003534
N398A398VgCagTa11B.1.1.1740.003378
N398A398VgCagTa11B.1.1.1920.002309
N398A398VgCagTa11B.1.1.2070.001182
N398A398VgCagTa11B.1.1.2310.003096
N398A398VgCagTa11B.1.1.2530.002506
N398A398VgCagTa11B.1.1.2670.010101
N398A398VgCagTa11B.1.1.2730.006757
N398A398VgCagTa11B.1.1.2910.000742
N398A398VgCagTa11B.1.1.3010.001179
N398A398VgCagTa11B.1.1.310.066667
N398A398VgCagTa11B.1.1.3110.000358
N398A398VgCagTa11B.1.1.3180.000302
N398A398VgCagTa11B.1.1.330.000421
N398A398VgCagTa11B.1.1.3320.03125
N398A398VgCagTa11B.1.1.3340.016393
N398A398VgCagTa11B.1.1.3510.002793
N398A398VgCagTa11B.1.1.3590.027778
N398A398VgCagTa11B.1.1.370.000193
N398A398VgCagTa11B.1.1.3740.002375
N398A398VgCagTa11B.1.1.3970.002252
N398A398VgCagTa11B.1.1.4090.002833
N398A398VgCagTa11B.1.1.4170.002703
N398A398VgCagTa11B.1.1.4200.001006
N398A398VgCagTa11B.1.1.440.00241
N398A398VgCagTa11B.1.1.4530.008475
N398A398VgCagTa11B.1.1.4640.001473
N398A398VgCagTa11B.1.1.4660.008696
N398A398VgCagTa11B.1.1.500.000679
N398A398VgCagTa11B.1.1.5070.008696
N398A398VgCagTa11B.1.1.5230.001563
N398A398VgCagTa11B.1.1.540.003021
N398A398VgCagTa11B.1.1.700.000341
N398A398VgCagTa11B.1.1420.002899
N398A398VgCagTa11B.1.160.220.006757
N398A398VgCagTa11B.1.177.160.000664
N398A398VgCagTa11B.1.177.210.000076
N398A398VgCagTa11B.1.177.230.003236
N398A398VgCagTa11B.1.177.320.00135
N398A398VgCagTa11B.1.177.350.000691
N398A398VgCagTa11B.1.177.440.000519
N398A398VgCagTa11B.1.177.60.000977
N398A398VgCagTa11B.1.177.650.000665
N398A398VgCagTa11B.1.177.70.000165
N398A398VgCagTa11B.1.177.720.00339
N398A398VgCagTa11B.1.177.730.000566
N398A398VgCagTa11B.1.177.780.009709
N398A398VgCagTa11B.1.177.820.000477
N398A398VgCagTa11B.1.2220.001692
N398A398VgCagTa11B.1.2420.018868
N398A398VgCagTa11B.1.258.170.000104
N398A398VgCagTa11B.1.258.20.004505
N398A398VgCagTa11B.1.3010.005917
N398A398VgCagTa11B.1.3330.010526
N398A398VgCagTa11B.1.3380.008621
N398A398VgCagTa11B.1.351.50.0006
N398A398VgCagTa11B.1.36.10.00114
N398A398VgCagTa11B.1.36.100.004785
N398A398VgCagTa11B.1.36.270.000763
N398A398VgCagTa11B.1.3610.001289
N398A398VgCagTa11B.1.3660.004878
N398A398VgCagTa11B.1.370.014706
N398A398VgCagTa11B.1.3710.001122
N398A398VgCagTa11B.1.3890.001002
N398A398VgCagTa11B.1.3950.007042
N398A398VgCagTa11B.1.4040.001302
N398A398VgCagTa11B.1.4280.00102
N398A398VgCagTa11B.1.428.20.033333
N398A398VgCagTa11B.1.4360.001029
N398A398VgCagTa11B.1.4390.005917
N398A398VgCagTa11B.1.4410.009615
N398A398VgCagTa11B.1.4590.004082
N398A398VgCagTa11B.1.4620.007246
N398A398VgCagTa11B.1.5090.000866
N398A398VgCagTa11B.1.5210.004975
N398A398VgCagTa11B.1.5560.007519
N398A398VgCagTa11B.1.575.10.002439
N398A398VgCagTa11B.1.5800.004065
N398A398VgCagTa11B.1.5860.010989
N398A398VgCagTa11B.1.5880.00091
N398A398VgCagTa11B.1.5970.00463
N398A398VgCagTa11B.1.6120.002653
N398A398VgCagTa11B.1.619.10.000641
N398A398VgCagTa11C.350.000774
N398A398VgCagTa11C.36.30.000567
N398A398VgCagTa11C.400.027778
N398A398VgCagTa11P.1.120.000484
N398A398VgCagTa11P.1.20.001156
N398A398VgCagTa11P.60.003145
N398A398VgCagTa11Q.30.000145
N398A398VgCagTa11R.10.00009
N398A398VgCagTa11U.20.008772
N398A398VgCagTa11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.