CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 398 | A398V | nonsyn | gCa | gTa | 13552 | 13547 | 0.999631 | 29465-29467 | |
N | 398 | A398V | nonsyn | gCA | gTT | 13552 | 3 | 0.00022137 | 29465-29467 | |
N | 398 | A398V | nonsyn | gCA | gTC | 13552 | 1 | 0.0000737898 | 29465-29467 | |
N | 398 | A398V | nonsyn | gCA | gTG | 13552 | 1 | 0.0000737898 | 29465-29467 | |
N | 398 | A398S | nonsyn | Gca | Tca | 1414 | 1412 | 0.998586 | 29465-29467 | |
N | 398 | A398S | nonsyn | GcA | TcC | 1414 | 2 | 0.00141443 | 29465-29467 | |
N | 398 | A398A | syn | gcA | gcC | 574 | 268 | 0.466899 | 29465-29467 | |
N | 398 | A398A | syn | gcA | gcT | 574 | 161 | 0.280488 | 29465-29467 | |
N | 398 | A398A | syn | gcA | gcG | 574 | 145 | 0.252613 | 29465-29467 | |
N | 398 | A398T | nonsyn | Gca | Aca | 115 | 114 | 0.991304 | 29465-29467 | |
N | 398 | A398T | nonsyn | GcA | AcC | 115 | 1 | 0.00869565 | 29465-29467 | |
N | 398 | A398del | del | GCA | --- | 49 | 49 | 1 | 29465-29467 | |
N | 398 | A398P | nonsyn | Gca | Cca | 42 | 41 | 0.97619 | 29465-29467 | |
N | 398 | A398P | nonsyn | GcA | CcT | 42 | 1 | 0.0238095 | 29465-29467 | |
N | 398 | A398E | nonsyn | gCa | gAa | 11 | 11 | 1 | 29465-29467 | |
N | 398 | A398del1 | del | gcA | gc- | 10 | 7 | 0.7 | 29465-29467 | |
N | 398 | A398del1 | del | Gca | -ca | 10 | 3 | 0.3 | 29465-29467 | |
N | 398 | A398G | nonsyn | gCa | gGa | 7 | 6 | 0.857143 | 29465-29467 | |
N | 398 | A398G | nonsyn | gCA | gGG | 7 | 1 | 0.142857 | 29465-29467 | |
N | 398 | A398L | nonsyn | GCa | TTa | 2 | 2 | 1 | 29465-29467 | |
N | 398 | A398D | nonsyn | gCA | gAT | 2 | 2 | 1 | 29465-29467 | |
N | 398 | A398Q | nonsyn | GCa | CAa | 1 | 1 | 1 | 29465-29467 | |
N | 398 | A398del2 | del | gCA | g-- | 1 | 1 | 1 | 29465-29467 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 398 | A398V | gCa | gTa | 13547 | 13552 | All | 0.002591 |
N | 398 | A398V | gCA | gTT | 3 | 13552 | All | 0.000001 |
N | 398 | A398V | gCA | gTC | 1 | 13552 | All | 0 |
N | 398 | A398V | gCA | gTG | 1 | 13552 | All | 0 |
N | 398 | A398V | gCa | gTa | 4512 | 4512 | AD.2 | 0.987957 |
N | 398 | A398V | gCa | gTa | 4410 | 4411 | B.1.1.7 | 0.003948 |
N | 398 | A398V | gCA | gTG | 1 | 4411 | B.1.1.7 | 0.000001 |
N | 398 | A398S | Gca | Tca | 1412 | 1414 | All | 0.00027 |
N | 398 | A398S | GcA | TcC | 2 | 1414 | All | 0 |
N | 398 | A398V | gCa | gTa | 719 | 719 | AY.4 | 0.001119 |
N | 398 | A398A | gcA | gcC | 268 | 574 | All | 0.000051 |
N | 398 | A398A | gcA | gcT | 161 | 574 | All | 0.000031 |
N | 398 | A398A | gcA | gcG | 145 | 574 | All | 0.000028 |
N | 398 | A398V | gCa | gTa | 307 | 307 | B.1.551 | 0.396129 |
N | 398 | A398V | gCa | gTa | 306 | 306 | B.1 | 0.002803 |
N | 398 | A398V | gCa | gTa | 247 | 247 | B.1.2 | 0.002175 |
N | 398 | A398V | gCa | gTa | 241 | 241 | AD.1 | 0.99177 |
N | 398 | A398S | Gca | Tca | 231 | 232 | AY.4 | 0.00036 |
N | 398 | A398S | GcA | TcC | 1 | 232 | AY.4 | 0.000002 |
N | 398 | A398S | Gca | Tca | 231 | 231 | B.1.617.2 | 0.00087 |
N | 398 | A398A | gcA | gcC | 166 | 201 | AY.4 | 0.000258 |
N | 398 | A398A | gcA | gcT | 31 | 201 | AY.4 | 0.000048 |
N | 398 | A398A | gcA | gcG | 4 | 201 | AY.4 | 0.000006 |
N | 398 | A398V | gCa | gTa | 167 | 167 | B.1.177 | 0.002199 |
N | 398 | A398V | gCa | gTa | 166 | 166 | AY.39 | 0.004102 |
N | 398 | A398V | gCa | gTa | 150 | 150 | B.1.617.2 | 0.000565 |
N | 398 | A398S | Gca | Tca | 145 | 145 | AY.98 | 0.011454 |
N | 398 | A398V | gCa | gTa | 138 | 138 | Q.8 | 0.022757 |
N | 398 | A398S | Gca | Tca | 125 | 126 | B.1.1.7 | 0.000112 |
N | 398 | A398S | GcA | TcC | 1 | 126 | B.1.1.7 | 0.000001 |
N | 398 | A398V | gCa | gTa | 120 | 120 | AY.103 | 0.000745 |
N | 398 | A398V | gCa | gTa | 118 | 118 | B.1.1 | 0.002141 |
N | 398 | A398T | Gca | Aca | 114 | 115 | All | 0.000022 |
N | 398 | A398T | GcA | AcC | 1 | 115 | All | 0 |
N | 398 | A398V | gCa | gTa | 107 | 107 | B.1.1.317 | 0.044051 |
N | 398 | A398V | gCa | gTa | 104 | 104 | B.1.1.315 | 0.881356 |
N | 398 | A398V | gCa | gTa | 86 | 86 | B.1.526 | 0.002021 |
N | 398 | A398A | gcA | gcC | 70 | 82 | AY.25 | 0.000421 |
N | 398 | A398A | gcA | gcG | 10 | 82 | AY.25 | 0.00006 |
N | 398 | A398A | gcA | gcT | 2 | 82 | AY.25 | 0.000012 |
N | 398 | A398V | gCa | gTa | 79 | 79 | AY.25 | 0.000475 |
N | 398 | A398T | Gca | Aca | 75 | 75 | B.1.1.7 | 0.000067 |
N | 398 | A398V | gCa | gTa | 72 | 72 | P.1 | 0.001134 |
N | 398 | A398V | gCa | gTa | 58 | 58 | B.1.351 | 0.001724 |
N | 398 | A398V | gCa | gTa | 54 | 54 | AY.33 | 0.003606 |
N | 398 | A398S | Gca | Tca | 51 | 51 | AY.43 | 0.000226 |
N | 398 | A398V | gCa | gTa | 51 | 51 | AY.44 | 0.00031 |
N | 398 | A398del | GCA | --- | 49 | 49 | All | 0.000009 |
N | 398 | A398V | gCa | gTa | 49 | 49 | AY.26 | 0.001387 |
N | 398 | A398V | gCa | gTa | 46 | 46 | AY.43 | 0.000204 |
N | 398 | A398S | Gca | Tca | 46 | 46 | B.1.2 | 0.000405 |
N | 398 | A398V | gCa | gTa | 43 | 43 | B.1.160 | 0.001341 |
N | 398 | A398P | Gca | Cca | 41 | 42 | All | 0.000008 |
N | 398 | A398P | GcA | CcT | 1 | 42 | All | 0 |
N | 398 | A398S | Gca | Tca | 37 | 37 | AY.103 | 0.00023 |
N | 398 | A398V | gCa | gTa | 36 | 36 | B.1.1.519 | 0.00143 |
N | 398 | A398A | gcA | gcT | 35 | 35 | AY.117 | 0.002958 |
N | 398 | A398A | gcA | gcG | 21 | 35 | B.1.1.7 | 0.000019 |
N | 398 | A398A | gcA | gcT | 13 | 35 | B.1.1.7 | 0.000012 |
N | 398 | A398A | gcA | gcC | 1 | 35 | B.1.1.7 | 0.000001 |
N | 398 | A398V | gCa | gTa | 35 | 35 | B.1.258 | 0.002329 |
N | 398 | A398V | gCa | gTa | 31 | 31 | AY.3 | 0.000308 |
N | 398 | A398V | gCa | gTa | 31 | 31 | B.1.427 | 0.001565 |
N | 398 | A398A | gcA | gcT | 17 | 29 | B.1.617.2 | 0.000064 |
N | 398 | A398A | gcA | gcC | 9 | 29 | B.1.617.2 | 0.000034 |
N | 398 | A398A | gcA | gcG | 3 | 29 | B.1.617.2 | 0.000011 |
N | 398 | A398V | gCa | gTa | 28 | 28 | AY.102 | 0.000742 |
N | 398 | A398V | gCa | gTa | 26 | 26 | B.1.234 | 0.003431 |
N | 398 | A398V | gCa | gTa | 25 | 25 | B.1.429 | 0.000588 |
N | 398 | A398P | Gca | Cca | 24 | 24 | AY.25 | 0.000144 |
N | 398 | A398S | Gca | Tca | 24 | 24 | AY.44 | 0.000146 |
N | 398 | A398S | Gca | Tca | 24 | 24 | B.1 | 0.00022 |
N | 398 | A398V | gCa | gTa | 24 | 24 | B.1.1.63 | 0.009259 |
N | 398 | A398S | Gca | Tca | 24 | 24 | B.1.177.82 | 0.011456 |
N | 398 | A398S | Gca | Tca | 23 | 23 | AY.20 | 0.000894 |
N | 398 | A398V | gCa | gTa | 23 | 23 | B.1.232 | 0.012359 |
N | 398 | A398V | gCa | gTa | 22 | 22 | AY.4.2 | 0.000477 |
N | 398 | A398V | gCa | gTa | 22 | 22 | B.1.243 | 0.001531 |
N | 398 | A398V | gCa | gTa | 21 | 21 | AD.2.1 | 0.954545 |
N | 398 | A398S | Gca | Tca | 21 | 21 | AY.46.6 | 0.001516 |
N | 398 | A398V | gCa | gTa | 21 | 21 | AY.9.2 | 0.000771 |
N | 398 | A398V | gCa | gTa | 20 | 20 | AY.75 | 0.00112 |
N | 398 | A398V | gCa | gTa | 20 | 20 | B.1.619 | 0.017422 |
N | 398 | A398S | Gca | Tca | 19 | 19 | P.1 | 0.000299 |
N | 398 | A398S | Gca | Tca | 18 | 18 | AY.25 | 0.000108 |
N | 398 | A398S | Gca | Tca | 18 | 18 | B.1.396 | 0.012703 |
N | 398 | A398V | gCa | gTa | 17 | 17 | B.1.111 | 0.019976 |
N | 398 | A398S | Gca | Tca | 16 | 16 | AY.4.2 | 0.000347 |
N | 398 | A398V | gCa | gTa | 15 | 15 | AY.29 | 0.000237 |
N | 398 | A398S | Gca | Tca | 15 | 15 | AY.29 | 0.000237 |
N | 398 | A398A | gcA | gcG | 15 | 15 | AY.33 | 0.001002 |
N | 398 | A398V | gCa | gTa | 15 | 15 | AY.5 | 0.00031 |
N | 398 | A398A | gcA | gcG | 15 | 15 | AY.99.2 | 0.001382 |
N | 398 | A398V | gCa | gTa | 15 | 15 | B.1.596 | 0.001307 |
N | 398 | A398V | gCa | gTa | 14 | 14 | B.1.241 | 0.011364 |
N | 398 | A398V | gCa | gTa | 14 | 14 | B.1.575 | 0.004248 |
N | 398 | A398V | gCa | gTa | 14 | 14 | B.1.637 | 0.001023 |
N | 398 | A398V | gCa | gTa | 13 | 13 | AY.118 | 0.000814 |
N | 398 | A398V | gCa | gTa | 13 | 13 | AY.121 | 0.001759 |
N | 398 | A398T | Gca | Aca | 13 | 13 | AY.4 | 0.00002 |
N | 398 | A398V | gCa | gTa | 13 | 13 | AY.47 | 0.000404 |
N | 398 | A398V | gCa | gTa | 13 | 13 | B.1.1.25 | 0.007391 |
N | 398 | A398S | Gca | Tca | 13 | 13 | B.1.177 | 0.000171 |
N | 398 | A398S | Gca | Tca | 12 | 12 | AY.120 | 0.000446 |
N | 398 | A398V | gCa | gTa | 12 | 12 | AY.23 | 0.000837 |
N | 398 | A398S | Gca | Tca | 12 | 12 | AY.39 | 0.000297 |
N | 398 | A398S | Gca | Tca | 12 | 12 | B.1.1 | 0.000218 |
N | 398 | A398A | gcA | gcG | 10 | 12 | B.1.2 | 0.000088 |
N | 398 | A398A | gcA | gcT | 2 | 12 | B.1.2 | 0.000018 |
N | 398 | A398E | gCa | gAa | 11 | 11 | All | 0.000002 |
N | 398 | A398S | Gca | Tca | 11 | 11 | AY.100 | 0.000506 |
N | 398 | A398V | gCa | gTa | 11 | 11 | AY.35 | 0.002564 |
N | 398 | A398S | Gca | Tca | 11 | 11 | AY.39.1 | 0.000436 |
N | 398 | A398V | gCa | gTa | 11 | 11 | C.36 | 0.010018 |
N | 398 | A398del1 | gcA | gc- | 7 | 10 | All | 0.000001 |
N | 398 | A398del1 | Gca | -ca | 3 | 10 | All | 0.000001 |
N | 398 | A398V | gCa | gTa | 10 | 10 | AY.20 | 0.000389 |
N | 398 | A398S | Gca | Tca | 10 | 10 | AY.75 | 0.00056 |
N | 398 | A398A | gcA | gcG | 5 | 10 | B.1.1 | 0.000091 |
N | 398 | A398A | gcA | gcT | 3 | 10 | B.1.1 | 0.000054 |
N | 398 | A398A | gcA | gcC | 2 | 10 | B.1.1 | 0.000036 |
N | 398 | A398V | gCa | gTa | 10 | 10 | B.1.1.305 | 0.03861 |
N | 398 | A398S | Gca | Tca | 10 | 10 | B.1.160 | 0.000312 |
N | 398 | A398V | gCa | gTa | 10 | 10 | B.1.351.2 | 0.003026 |
N | 398 | A398V | gCa | gTa | 10 | 10 | B.1.623 | 0.005365 |
N | 398 | A398A | gcA | gcC | 9 | 10 | P.1 | 0.000142 |
N | 398 | A398A | gcA | gcG | 1 | 10 | P.1 | 0.000016 |
N | 398 | A398S | Gca | Tca | 9 | 9 | AY.3.1 | 0.000767 |
N | 398 | A398V | gCa | gTa | 9 | 9 | AY.46.6 | 0.00065 |
N | 398 | A398V | gCa | gTa | 9 | 9 | B.1.1.270 | 0.092784 |
N | 398 | A398V | gCa | gTa | 9 | 9 | B.1.1.410 | 0.333333 |
N | 398 | A398V | gCa | gTa | 9 | 9 | B.1.335 | 0.092784 |
N | 398 | A398V | gCa | gTa | 9 | 9 | B.1.621 | 0.000797 |
N | 398 | A398S | Gca | Tca | 9 | 9 | P.1.14 | 0.00043 |
N | 398 | A398A | gcA | gcC | 8 | 8 | AY.46.4 | 0.001316 |
N | 398 | A398V | gCa | gTa | 8 | 8 | AY.5.1 | 0.030075 |
N | 398 | A398V | gCa | gTa | 8 | 8 | AY.77 | 0.009019 |
N | 398 | A398A | gcA | gcG | 8 | 8 | AY.98.1 | 0.000387 |
N | 398 | A398S | Gca | Tca | 8 | 8 | B.1.1.317 | 0.003294 |
N | 398 | A398V | gCa | gTa | 8 | 8 | B.1.1.526 | 0.028369 |
N | 398 | A398A | gcA | gcT | 8 | 8 | B.1.351 | 0.000238 |
N | 398 | A398V | gCa | gTa | 8 | 8 | B.1.36 | 0.001167 |
N | 398 | A398V | gCa | gTa | 8 | 8 | B.1.36.29 | 0.004139 |
N | 398 | A398V | gCa | gTa | 8 | 8 | B.1.525 | 0.000905 |
N | 398 | A398V | gCa | gTa | 8 | 8 | B.1.628 | 0.002819 |
N | 398 | A398G | gCa | gGa | 6 | 7 | All | 0.000001 |
N | 398 | A398G | gCA | gGG | 1 | 7 | All | 0 |
N | 398 | A398S | Gca | Tca | 7 | 7 | AY.102 | 0.000186 |
N | 398 | A398V | gCa | gTa | 7 | 7 | AY.111 | 0.001282 |
N | 398 | A398S | Gca | Tca | 7 | 7 | AY.119 | 0.000247 |
N | 398 | A398A | gcA | gcT | 4 | 7 | AY.43 | 0.000018 |
N | 398 | A398A | gcA | gcG | 3 | 7 | AY.43 | 0.000013 |
N | 398 | A398V | gCa | gTa | 7 | 7 | AY.99.2 | 0.000645 |
N | 398 | A398V | gCa | gTa | 7 | 7 | B.1.1.427 | 1 |
N | 398 | A398V | gCa | gTa | 7 | 7 | B.1.221 | 0.000497 |
N | 398 | A398V | gCa | gTa | 7 | 7 | B.1.36.17 | 0.003458 |
N | 398 | A398V | gCa | gTa | 7 | 7 | B.1.401 | 0.057377 |
N | 398 | A398S | Gca | Tca | 7 | 7 | B.1.526 | 0.000165 |
N | 398 | A398V | gCa | gTa | 7 | 7 | P.1.14 | 0.000335 |
N | 398 | A398S | Gca | Tca | 6 | 6 | AY.111 | 0.001099 |
N | 398 | A398V | gCa | gTa | 6 | 6 | AY.120 | 0.000223 |
N | 398 | A398S | Gca | Tca | 6 | 6 | AY.121 | 0.000812 |
N | 398 | A398A | gcA | gcG | 3 | 6 | AY.20 | 0.000117 |
N | 398 | A398A | gcA | gcT | 3 | 6 | AY.20 | 0.000117 |
N | 398 | A398V | gCa | gTa | 6 | 6 | AY.27 | 0.000388 |
N | 398 | A398S | Gca | Tca | 6 | 6 | AY.34 | 0.000582 |
N | 398 | A398V | gCa | gTa | 6 | 6 | AY.42 | 0.000241 |
N | 398 | A398A | gcA | gcT | 5 | 6 | AY.44 | 0.00003 |
N | 398 | A398A | gcA | gcG | 1 | 6 | AY.44 | 0.000006 |
N | 398 | A398V | gCa | gTa | 6 | 6 | AY.9.1 | 0.000502 |
N | 398 | A398A | gcA | gcG | 4 | 6 | B.1 | 0.000037 |
N | 398 | A398A | gcA | gcT | 2 | 6 | B.1 | 0.000018 |
N | 398 | A398P | Gca | Cca | 6 | 6 | B.1.1.7 | 0.000005 |
N | 398 | A398S | Gca | Tca | 6 | 6 | B.1.351 | 0.000178 |
N | 398 | A398V | gCa | gTa | 6 | 6 | B.1.36.18 | 0.002521 |
N | 398 | A398V | gCa | gTa | 6 | 6 | B.1.369 | 0.001711 |
N | 398 | A398S | Gca | Tca | 6 | 6 | B.1.617.1 | 0.000774 |
N | 398 | A398V | gCa | gTa | 6 | 6 | P.1.7 | 0.001916 |
N | 398 | A398V | gCa | gTa | 5 | 5 | AY.100 | 0.00023 |
N | 398 | A398A | gcA | gcT | 4 | 5 | AY.102 | 0.000106 |
N | 398 | A398A | gcA | gcG | 1 | 5 | AY.102 | 0.000027 |
N | 398 | A398V | gCa | gTa | 5 | 5 | AY.119 | 0.000177 |
N | 398 | A398V | gCa | gTa | 5 | 5 | AY.16 | 0.001898 |
N | 398 | A398T | Gca | Aca | 5 | 5 | AY.25 | 0.00003 |
N | 398 | A398A | gcA | gcT | 3 | 5 | AY.26 | 0.000085 |
N | 398 | A398A | gcA | gcG | 2 | 5 | AY.26 | 0.000057 |
N | 398 | A398A | gcA | gcT | 3 | 5 | AY.3 | 0.00003 |
N | 398 | A398A | gcA | gcG | 2 | 5 | AY.3 | 0.00002 |
N | 398 | A398V | gCa | gTa | 5 | 5 | AY.3.1 | 0.000426 |
N | 398 | A398V | gCa | gTa | 5 | 5 | AY.30 | 0.001979 |
N | 398 | A398V | gCa | gTa | 5 | 5 | AY.39.1 | 0.000198 |
N | 398 | A398V | gCa | gTa | 5 | 5 | AY.4.3 | 0.004209 |
N | 398 | A398V | gCa | gTa | 5 | 5 | AY.54 | 0.000477 |
N | 398 | A398V | gCa | gTa | 5 | 5 | AY.98.1 | 0.000242 |
N | 398 | A398S | Gca | Tca | 5 | 5 | AY.98.1 | 0.000242 |
N | 398 | A398del | GCA | --- | 5 | 5 | B.1 | 0.000046 |
N | 398 | A398V | gCa | gTa | 5 | 5 | B.1.1.121 | 0.012136 |
N | 398 | A398S | Gca | Tca | 5 | 5 | B.1.1.216 | 0.004452 |
N | 398 | A398A | gcA | gcG | 5 | 5 | B.1.1.298 | 0.00431 |
N | 398 | A398S | Gca | Tca | 5 | 5 | B.1.1.305 | 0.019305 |
N | 398 | A398V | gCa | gTa | 5 | 5 | B.1.1.306 | 0.002192 |
N | 398 | A398V | gCa | gTa | 5 | 5 | B.1.177.77 | 0.003631 |
N | 398 | A398V | gCa | gTa | 5 | 5 | B.1.177.80 | 0.00956 |
N | 398 | A398V | gCa | gTa | 5 | 5 | B.1.177.86 | 0.000917 |
N | 398 | A398S | Gca | Tca | 5 | 5 | B.1.596 | 0.000436 |
N | 398 | A398S | Gca | Tca | 5 | 5 | C.36 | 0.004554 |
N | 398 | A398del | GCA | --- | 5 | 5 | C.37 | 0.00058 |
N | 398 | A398V | gCa | gTa | 5 | 5 | C.37 | 0.00058 |
N | 398 | A398V | gCa | gTa | 5 | 5 | P.1.15 | 0.001162 |
N | 398 | A398V | gCa | gTa | 5 | 5 | Q.1 | 0.000632 |
N | 398 | A398E | gCa | gAa | 4 | 4 | 0.222222 | |
N | 398 | A398V | gCA | gTT | 2 | 4 | 0.111111 | |
N | 398 | A398V | gCa | gTa | 2 | 4 | 0.111111 | |
N | 398 | A398A | gcA | gcG | 3 | 4 | AY.100 | 0.000138 |
N | 398 | A398A | gcA | gcT | 1 | 4 | AY.100 | 0.000046 |
N | 398 | A398A | gcA | gcT | 2 | 4 | AY.103 | 0.000012 |
N | 398 | A398A | gcA | gcG | 2 | 4 | AY.103 | 0.000012 |
N | 398 | A398V | gCa | gTa | 4 | 4 | AY.117 | 0.000338 |
N | 398 | A398S | Gca | Tca | 4 | 4 | AY.3 | 0.00004 |
N | 398 | A398T | Gca | Aca | 4 | 4 | AY.34 | 0.000388 |
N | 398 | A398V | gCa | gTa | 4 | 4 | AY.45 | 0.000487 |
N | 398 | A398S | Gca | Tca | 4 | 4 | AY.46 | 0.000416 |
N | 398 | A398S | Gca | Tca | 4 | 4 | AY.54 | 0.000381 |
N | 398 | A398V | gCa | gTa | 4 | 4 | AY.55 | 0.00367 |
N | 398 | A398S | Gca | Tca | 4 | 4 | AY.9.1 | 0.000335 |
N | 398 | A398V | gCa | gTa | 4 | 4 | B.1.1.216 | 0.003562 |
N | 398 | A398V | gCa | gTa | 4 | 4 | B.1.1.222 | 0.000816 |
N | 398 | A398del | GCA | --- | 4 | 4 | B.1.1.7 | 0.000004 |
N | 398 | A398del1 | gcA | gc- | 2 | 4 | B.1.1.7 | 0.000002 |
N | 398 | A398del1 | Gca | -ca | 2 | 4 | B.1.1.7 | 0.000002 |
N | 398 | A398V | gCa | gTa | 4 | 4 | B.1.400 | 0.001716 |
N | 398 | A398V | gCa | gTa | 4 | 4 | B.1.466.2 | 0.001565 |
N | 398 | A398V | gCa | gTa | 4 | 4 | B.1.564 | 0.001704 |
N | 398 | A398V | gCa | gTa | 4 | 4 | B.1.582 | 0.001963 |
N | 398 | A398V | gCa | gTa | 4 | 4 | B.1.595 | 0.001044 |
N | 398 | A398V | gCa | gTa | 4 | 4 | D.2 | 0.0003 |
N | 398 | A398V | gCa | gTa | 4 | 4 | P.2 | 0.000747 |
N | 398 | A398V | gCa | gTa | 3 | 3 | A | 0.001161 |
N | 398 | A398V | gCa | gTa | 3 | 3 | AE.8 | 0.001467 |
N | 398 | A398V | gCa | gTa | 3 | 3 | AY.113 | 0.000427 |
N | 398 | A398A | gcA | gcG | 2 | 3 | AY.39 | 0.000049 |
N | 398 | A398A | gcA | gcC | 1 | 3 | AY.39 | 0.000025 |
N | 398 | A398E | gCa | gAa | 3 | 3 | AY.4 | 0.000005 |
N | 398 | A398S | Gca | Tca | 3 | 3 | AY.4.5 | 0.000322 |
N | 398 | A398A | gcA | gcT | 3 | 3 | AY.45 | 0.000365 |
N | 398 | A398A | gcA | gcT | 3 | 3 | AY.5 | 0.000062 |
N | 398 | A398V | gCa | gTa | 3 | 3 | AY.6 | 0.000123 |
N | 398 | A398V | gCa | gTa | 3 | 3 | AY.61 | 0.000314 |
N | 398 | A398V | gCa | gTa | 3 | 3 | AY.75.1 | 0.000541 |
N | 398 | A398V | gCa | gTa | 3 | 3 | AY.94 | 0.001328 |
N | 398 | A398del | GCA | --- | 3 | 3 | B.1.1 | 0.000054 |
N | 398 | A398V | gCa | gTa | 3 | 3 | B.1.1.214 | 0.000166 |
N | 398 | A398V | gCa | gTa | 3 | 3 | B.1.1.369 | 0.001339 |
N | 398 | A398V | gCa | gTa | 3 | 3 | B.1.1.434 | 0.001046 |
N | 398 | A398S | Gca | Tca | 3 | 3 | B.1.1.519 | 0.000119 |
N | 398 | A398G | gCa | gGa | 2 | 3 | B.1.1.7 | 0.000002 |
N | 398 | A398G | gCA | gGG | 1 | 3 | B.1.1.7 | 0.000001 |
N | 398 | A398V | gCa | gTa | 3 | 3 | B.1.110.3 | 0.002155 |
N | 398 | A398T | Gca | Aca | 3 | 3 | B.1.177.32 | 0.004049 |
N | 398 | A398V | gCa | gTa | 3 | 3 | B.1.177.60 | 0.000655 |
N | 398 | A398V | gCa | gTa | 3 | 3 | B.1.177.81 | 0.000568 |
N | 398 | A398del | GCA | --- | 3 | 3 | B.1.2 | 0.000026 |
N | 398 | A398del1 | gcA | gc- | 2 | 3 | B.1.2 | 0.000018 |
N | 398 | A398del1 | Gca | -ca | 1 | 3 | B.1.2 | 0.000009 |
N | 398 | A398S | Gca | Tca | 3 | 3 | B.1.221 | 0.000213 |
N | 398 | A398S | Gca | Tca | 3 | 3 | B.1.36 | 0.000438 |
N | 398 | A398V | gCa | gTa | 3 | 3 | B.1.396 | 0.002117 |
N | 398 | A398S | Gca | Tca | 3 | 3 | B.1.404 | 0.003906 |
N | 398 | A398P | Gca | Cca | 3 | 3 | B.1.422 | 0.002437 |
N | 398 | A398S | Gca | Tca | 3 | 3 | B.1.427 | 0.000151 |
N | 398 | A398V | gCa | gTa | 3 | 3 | B.1.568 | 0.003333 |
N | 398 | A398V | gCa | gTa | 3 | 3 | B.1.617.1 | 0.000387 |
N | 398 | A398S | Gca | Tca | 3 | 3 | C.37 | 0.000348 |
N | 398 | A398S | Gca | Tca | 3 | 3 | P.2 | 0.00056 |
N | 398 | A398V | gCa | gTa | 3 | 3 | Q.6 | 0.019868 |
N | 398 | A398D | gCA | gAT | 2 | 2 | 0.111111 | |
N | 398 | A398del | GCA | --- | 2 | 2 | 0.111111 | |
N | 398 | A398D | gCA | gAT | 2 | 2 | All | 0 |
N | 398 | A398L | GCa | TTa | 2 | 2 | All | 0 |
N | 398 | A398S | Gca | Tca | 2 | 2 | AY.113 | 0.000285 |
N | 398 | A398S | Gca | Tca | 2 | 2 | AY.13 | 0.000322 |
N | 398 | A398V | gCa | gTa | 2 | 2 | AY.16.1 | 0.00094 |
N | 398 | A398S | Gca | Tca | 2 | 2 | AY.23 | 0.000139 |
N | 398 | A398del | GCA | --- | 2 | 2 | AY.25 | 0.000012 |
N | 398 | A398S | Gca | Tca | 2 | 2 | AY.26 | 0.000057 |
N | 398 | A398V | gCa | gTa | 2 | 2 | AY.29.1 | 0.000441 |
N | 398 | A398V | gCa | gTa | 2 | 2 | AY.38 | 0.000999 |
N | 398 | A398A | gcA | gcG | 1 | 2 | AY.39.1 | 0.00004 |
N | 398 | A398A | gcA | gcT | 1 | 2 | AY.39.1 | 0.00004 |
N | 398 | A398V | gCa | gTa | 2 | 2 | AY.4.4 | 0.000818 |
N | 398 | A398V | gCa | gTa | 2 | 2 | AY.4.5 | 0.000215 |
N | 398 | A398S | Gca | Tca | 2 | 2 | AY.45 | 0.000243 |
N | 398 | A398S | Gca | Tca | 2 | 2 | AY.46.3 | 0.001867 |
N | 398 | A398V | gCa | gTa | 2 | 2 | AY.46.4 | 0.000329 |
N | 398 | A398S | Gca | Tca | 2 | 2 | AY.47 | 0.000062 |
N | 398 | A398S | Gca | Tca | 2 | 2 | AY.5.3 | 0.000675 |
N | 398 | A398V | gCa | gTa | 2 | 2 | AY.5.4 | 0.000553 |
N | 398 | A398V | gCa | gTa | 2 | 2 | AY.62 | 0.000871 |
N | 398 | A398V | gCa | gTa | 2 | 2 | AY.65 | 0.001066 |
N | 398 | A398V | gCa | gTa | 2 | 2 | AY.67 | 0.000929 |
N | 398 | A398V | gCa | gTa | 2 | 2 | AY.69 | 0.000373 |
N | 398 | A398S | Gca | Tca | 2 | 2 | AY.9.2 | 0.000073 |
N | 398 | A398V | gCa | gTa | 2 | 2 | AY.92 | 0.000575 |
N | 398 | A398V | gCa | gTa | 2 | 2 | AY.96 | 0.004149 |
N | 398 | A398V | gCa | gTa | 2 | 2 | AY.98 | 0.000158 |
N | 398 | A398V | gCa | gTa | 2 | 2 | B | 0.000256 |
N | 398 | A398del | GCA | --- | 2 | 2 | B.1.1.189 | 0.003026 |
N | 398 | A398S | Gca | Tca | 2 | 2 | B.1.1.222 | 0.000408 |
N | 398 | A398S | Gca | Tca | 2 | 2 | B.1.1.258 | 0.006515 |
N | 398 | A398V | gCa | gTa | 2 | 2 | B.1.1.284 | 0.000215 |
N | 398 | A398S | Gca | Tca | 2 | 2 | B.1.1.306 | 0.000877 |
N | 398 | A398V | gCa | gTa | 2 | 2 | B.1.1.336 | 0.033333 |
N | 398 | A398S | Gca | Tca | 2 | 2 | B.1.1.34 | 0.026316 |
N | 398 | A398S | Gca | Tca | 2 | 2 | B.1.1.354 | 0.008772 |
N | 398 | A398V | gCa | gTa | 2 | 2 | B.1.1.398 | 0.006452 |
N | 398 | A398V | gCa | gTa | 2 | 2 | B.1.1.46 | 0.008734 |
N | 398 | A398A | gcA | gcG | 2 | 2 | B.1.119 | 0.021053 |
N | 398 | A398V | gCa | gTa | 2 | 2 | B.1.128 | 0.001271 |
N | 398 | A398V | gCa | gTa | 2 | 2 | B.1.139 | 0.001466 |
N | 398 | A398A | gcA | gcG | 2 | 2 | B.1.160 | 0.000062 |
N | 398 | A398S | Gca | Tca | 2 | 2 | B.1.160.17 | 0.003401 |
N | 398 | A398del | GCA | --- | 2 | 2 | B.1.177 | 0.000026 |
N | 398 | A398A | gcA | gcG | 1 | 2 | B.1.177 | 0.000013 |
N | 398 | A398A | gcA | gcT | 1 | 2 | B.1.177 | 0.000013 |
N | 398 | A398T | Gca | Aca | 2 | 2 | B.1.177.10 | 0.001756 |
N | 398 | A398V | gCa | gTa | 2 | 2 | B.1.177.57 | 0.000562 |
N | 398 | A398V | gCa | gTa | 2 | 2 | B.1.236 | 0.004107 |
N | 398 | A398S | Gca | Tca | 2 | 2 | B.1.240 | 0.000431 |
N | 398 | A398S | Gca | Tca | 2 | 2 | B.1.243 | 0.000139 |
N | 398 | A398V | gCa | gTa | 2 | 2 | B.1.323 | 0.041667 |
N | 398 | A398V | gCa | gTa | 2 | 2 | B.1.337 | 0.011173 |
N | 398 | A398V | gCa | gTa | 2 | 2 | B.1.36.31 | 0.003503 |
N | 398 | A398V | gCa | gTa | 2 | 2 | B.1.36.7 | 0.008 |
N | 398 | A398V | gCa | gTa | 2 | 2 | B.1.399 | 0.003868 |
N | 398 | A398S | Gca | Tca | 2 | 2 | B.1.429 | 0.000047 |
N | 398 | A398V | gCa | gTa | 2 | 2 | B.1.433 | 0.00639 |
N | 398 | A398V | gCa | gTa | 2 | 2 | B.1.456 | 0.006536 |
N | 398 | A398V | gCa | gTa | 2 | 2 | B.1.468 | 0.011429 |
N | 398 | A398V | gCa | gTa | 2 | 2 | B.1.470 | 0.002809 |
N | 398 | A398V | gCa | gTa | 2 | 2 | B.1.561 | 0.000794 |
N | 398 | A398S | Gca | Tca | 2 | 2 | B.1.609 | 0.000959 |
N | 398 | A398A | gcA | gcT | 2 | 2 | B.1.618 | 0.008065 |
N | 398 | A398E | gCa | gAa | 2 | 2 | B.1.621 | 0.000177 |
N | 398 | A398V | gCa | gTa | 2 | 2 | B.1.636 | 0.013423 |
N | 398 | A398V | gCa | gTa | 2 | 2 | B.1.91 | 0.004149 |
N | 398 | A398V | gCa | gTa | 2 | 2 | B.23 | 0.005848 |
N | 398 | A398A | gcA | gcT | 2 | 2 | B.3.1 | 0.003317 |
N | 398 | A398S | Gca | Tca | 2 | 2 | B.4 | 0.004415 |
N | 398 | A398T | Gca | Aca | 2 | 2 | C.37 | 0.000232 |
N | 398 | A398S | Gca | Tca | 2 | 2 | D.2 | 0.00015 |
N | 398 | A398del | GCA | --- | 2 | 2 | P.1 | 0.000032 |
N | 398 | A398V | gCa | gTa | 2 | 2 | P.1.1 | 0.000635 |
N | 398 | A398A | gcA | gcG | 2 | 2 | P.1.14 | 0.000096 |
N | 398 | A398V | gCa | gTa | 2 | 2 | Q.4 | 0.00091 |
N | 398 | A398S | Gca | Tca | 2 | 2 | Q.8 | 0.00033 |
N | 398 | A398S | Gca | Tca | 2 | 2 | R.1 | 0.00018 |
N | 398 | A398V | gCa | gTa | 1 | 1 | A.2 | 0.000662 |
N | 398 | A398S | Gca | Tca | 1 | 1 | A.2.2 | 0.001689 |
N | 398 | A398S | Gca | Tca | 1 | 1 | A.23.1 | 0.000704 |
N | 398 | A398V | gCa | gTa | 1 | 1 | A.28 | 0.002646 |
N | 398 | A398L | GCa | TTa | 1 | 1 | AD.2 | 0.000219 |
N | 398 | A398V | gCa | gTa | 1 | 1 | AE.2 | 0.058824 |
N | 398 | A398Q | GCa | CAa | 1 | 1 | All | 0 |
N | 398 | A398del2 | gCA | g-- | 1 | 1 | All | 0 |
N | 398 | A398V | gCa | gTa | 1 | 1 | AM.4 | 0.003571 |
N | 398 | A398V | gCa | gTa | 1 | 1 | AP.1 | 0.001502 |
N | 398 | A398V | gCa | gTa | 1 | 1 | AS.2 | 0.015625 |
N | 398 | A398V | gCa | gTa | 1 | 1 | AY.10 | 0.00053 |
N | 398 | A398del | GCA | --- | 1 | 1 | AY.101 | 0.00049 |
N | 398 | A398G | gCa | gGa | 1 | 1 | AY.102 | 0.000027 |
N | 398 | A398T | Gca | Aca | 1 | 1 | AY.103 | 0.000006 |
N | 398 | A398S | Gca | Tca | 1 | 1 | AY.104 | 0.001984 |
N | 398 | A398S | Gca | Tca | 1 | 1 | AY.106 | 0.000335 |
N | 398 | A398S | Gca | Tca | 1 | 1 | AY.107 | 0.000466 |
N | 398 | A398S | Gca | Tca | 1 | 1 | AY.108 | 0.001103 |
N | 398 | A398V | gCa | gTa | 1 | 1 | AY.108 | 0.001103 |
N | 398 | A398S | Gca | Tca | 1 | 1 | AY.109 | 0.00074 |
N | 398 | A398del | GCA | --- | 1 | 1 | AY.114 | 0.000231 |
N | 398 | A398S | Gca | Tca | 1 | 1 | AY.116 | 0.000287 |
N | 398 | A398V | gCa | gTa | 1 | 1 | AY.116 | 0.000287 |
N | 398 | A398V | gCa | gTa | 1 | 1 | AY.116.1 | 0.000311 |
N | 398 | A398S | Gca | Tca | 1 | 1 | AY.118 | 0.000063 |
N | 398 | A398V | gCa | gTa | 1 | 1 | AY.120.1 | 0.000321 |
N | 398 | A398S | Gca | Tca | 1 | 1 | AY.120.2 | 0.001285 |
N | 398 | A398V | gCa | gTa | 1 | 1 | AY.120.2.1 | 0.000498 |
N | 398 | A398A | gcA | gcG | 1 | 1 | AY.120.2.1 | 0.000498 |
N | 398 | A398S | Gca | Tca | 1 | 1 | AY.14 | 0.000088 |
N | 398 | A398V | gCa | gTa | 1 | 1 | AY.14 | 0.000088 |
N | 398 | A398S | Gca | Tca | 1 | 1 | AY.16 | 0.00038 |
N | 398 | A398V | gCa | gTa | 1 | 1 | AY.22 | 0.002092 |
N | 398 | A398A | gcA | gcG | 1 | 1 | AY.23 | 0.00007 |
N | 398 | A398A | gcA | gcG | 1 | 1 | AY.23.1 | 0.000417 |
N | 398 | A398del2 | gCA | g-- | 1 | 1 | AY.26 | 0.000028 |
N | 398 | A398T | Gca | Aca | 1 | 1 | AY.29 | 0.000016 |
N | 398 | A398A | gcA | gcT | 1 | 1 | AY.29 | 0.000016 |
N | 398 | A398S | Gca | Tca | 1 | 1 | AY.29.1 | 0.000221 |
N | 398 | A398A | gcA | gcT | 1 | 1 | AY.29.1 | 0.000221 |
N | 398 | A398V | gCa | gTa | 1 | 1 | AY.32 | 0.000532 |
N | 398 | A398V | gCa | gTa | 1 | 1 | AY.34 | 0.000097 |
N | 398 | A398V | gCa | gTa | 1 | 1 | AY.34.1 | 0.00051 |
N | 398 | A398V | gCa | gTa | 1 | 1 | AY.37 | 0.000316 |
N | 398 | A398L | GCa | TTa | 1 | 1 | AY.4 | 0.000002 |
N | 398 | A398V | gCa | gTa | 1 | 1 | AY.4.1 | 0.000737 |
N | 398 | A398T | Gca | Aca | 1 | 1 | AY.4.2 | 0.000022 |
N | 398 | A398S | Gca | Tca | 1 | 1 | AY.4.4 | 0.000409 |
N | 398 | A398V | gCA | gTT | 1 | 1 | AY.40 | 0.000964 |
N | 398 | A398G | gCa | gGa | 1 | 1 | AY.42 | 0.00004 |
N | 398 | A398A | gcA | gcG | 1 | 1 | AY.42 | 0.00004 |
N | 398 | A398S | Gca | Tca | 1 | 1 | AY.42 | 0.00004 |
N | 398 | A398del1 | gcA | gc- | 1 | 1 | AY.43 | 0.000004 |
N | 398 | A398G | gCa | gGa | 1 | 1 | AY.44 | 0.000006 |
N | 398 | A398P | Gca | Cca | 1 | 1 | AY.44 | 0.000006 |
N | 398 | A398V | gCa | gTa | 1 | 1 | AY.46 | 0.000104 |
N | 398 | A398S | Gca | Tca | 1 | 1 | AY.46.1 | 0.001027 |
N | 398 | A398A | gcA | gcT | 1 | 1 | AY.46.6 | 0.000072 |
N | 398 | A398A | gcA | gcT | 1 | 1 | AY.47 | 0.000031 |
N | 398 | A398V | gCa | gTa | 1 | 1 | AY.49 | 0.003195 |
N | 398 | A398S | Gca | Tca | 1 | 1 | AY.5 | 0.000021 |
N | 398 | A398V | gCa | gTa | 1 | 1 | AY.5.2 | 0.002463 |
N | 398 | A398V | gCa | gTa | 1 | 1 | AY.5.3 | 0.000337 |
N | 398 | A398S | Gca | Tca | 1 | 1 | AY.52 | 0.000814 |
N | 398 | A398V | gCa | gTa | 1 | 1 | AY.52 | 0.000814 |
N | 398 | A398V | gCa | gTa | 1 | 1 | AY.53 | 0.000288 |
N | 398 | A398S | Gca | Tca | 1 | 1 | AY.55 | 0.000917 |
N | 398 | A398S | Gca | Tca | 1 | 1 | AY.59 | 0.00053 |
N | 398 | A398S | Gca | Tca | 1 | 1 | AY.6 | 0.000041 |
N | 398 | A398A | gcA | gcG | 1 | 1 | AY.6 | 0.000041 |
N | 398 | A398Q | GCa | CAa | 1 | 1 | AY.61 | 0.000105 |
N | 398 | A398A | gcA | gcG | 1 | 1 | AY.61 | 0.000105 |
N | 398 | A398P | Gca | Cca | 1 | 1 | AY.61 | 0.000105 |
N | 398 | A398S | Gca | Tca | 1 | 1 | AY.62 | 0.000436 |
N | 398 | A398del | GCA | --- | 1 | 1 | AY.62 | 0.000436 |
N | 398 | A398S | Gca | Tca | 1 | 1 | AY.65 | 0.000533 |
N | 398 | A398V | gCa | gTa | 1 | 1 | AY.7 | 0.000196 |
N | 398 | A398V | gCa | gTa | 1 | 1 | AY.7.1 | 0.000113 |
N | 398 | A398S | Gca | Tca | 1 | 1 | AY.72 | 0.001361 |
N | 398 | A398V | gCa | gTa | 1 | 1 | AY.72 | 0.001361 |
N | 398 | A398V | gCa | gTa | 1 | 1 | AY.73 | 0.000665 |
N | 398 | A398S | Gca | Tca | 1 | 1 | AY.74 | 0.000116 |
N | 398 | A398V | gCa | gTa | 1 | 1 | AY.74 | 0.000116 |
N | 398 | A398A | gcA | gcG | 1 | 1 | AY.75 | 0.000056 |
N | 398 | A398V | gCa | gTa | 1 | 1 | AY.80 | 0.001129 |
N | 398 | A398V | gCa | gTa | 1 | 1 | AY.82 | 0.001357 |
N | 398 | A398del | GCA | --- | 1 | 1 | AY.84 | 0.000437 |
N | 398 | A398A | gcA | gcG | 1 | 1 | AY.85 | 0.000427 |
N | 398 | A398S | Gca | Tca | 1 | 1 | AY.86 | 0.00083 |
N | 398 | A398S | Gca | Tca | 1 | 1 | AY.9 | 0.000068 |
N | 398 | A398del | GCA | --- | 1 | 1 | AY.9.2 | 0.000037 |
N | 398 | A398S | Gca | Tca | 1 | 1 | AY.92 | 0.000287 |
N | 398 | A398V | gCa | gTa | 1 | 1 | AY.99.1 | 0.001553 |
N | 398 | A398V | gCa | gTa | 1 | 1 | AZ.1 | 0.000867 |
N | 398 | A398S | Gca | Tca | 1 | 1 | AZ.2 | 0.000821 |
N | 398 | A398S | Gca | Tca | 1 | 1 | B | 0.000128 |
N | 398 | A398A | gcA | gcG | 1 | 1 | B | 0.000128 |
N | 398 | A398T | Gca | Aca | 1 | 1 | B.1.1 | 0.000018 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.1.1 | 0.000327 |
N | 398 | A398A | gcA | gcG | 1 | 1 | B.1.1.10 | 0.001115 |
N | 398 | A398del | GCA | --- | 1 | 1 | B.1.1.139 | 0.022727 |
N | 398 | A398S | Gca | Tca | 1 | 1 | B.1.1.141 | 0.002012 |
N | 398 | A398P | Gca | Cca | 1 | 1 | B.1.1.148 | 0.008772 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.1.161 | 0.003534 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.1.174 | 0.003378 |
N | 398 | A398S | Gca | Tca | 1 | 1 | B.1.1.181 | 0.004545 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.1.192 | 0.002309 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.1.207 | 0.001182 |
N | 398 | A398S | Gca | Tca | 1 | 1 | B.1.1.220 | 0.001859 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.1.231 | 0.003096 |
N | 398 | A398del | GCA | --- | 1 | 1 | B.1.1.236 | 0.006897 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.1.253 | 0.002506 |
N | 398 | A398T | Gca | Aca | 1 | 1 | B.1.1.263 | 0.001558 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.1.267 | 0.010101 |
N | 398 | A398V | gCA | gTC | 1 | 1 | B.1.1.27 | 0.00565 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.1.273 | 0.006757 |
N | 398 | A398A | gcA | gcG | 1 | 1 | B.1.1.28 | 0.000311 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.1.291 | 0.000742 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.1.301 | 0.001179 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.1.31 | 0.066667 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.1.311 | 0.000358 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.1.318 | 0.000302 |
N | 398 | A398S | Gca | Tca | 1 | 1 | B.1.1.326 | 0.001761 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.1.33 | 0.000421 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.1.332 | 0.03125 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.1.334 | 0.016393 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.1.351 | 0.002793 |
N | 398 | A398A | gcA | gcC | 1 | 1 | B.1.1.351 | 0.002793 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.1.359 | 0.027778 |
N | 398 | A398S | Gca | Tca | 1 | 1 | B.1.1.366 | 0.015873 |
N | 398 | A398del | GCA | --- | 1 | 1 | B.1.1.37 | 0.000193 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.1.37 | 0.000193 |
N | 398 | A398A | gcA | gcT | 1 | 1 | B.1.1.37 | 0.000193 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.1.374 | 0.002375 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.1.397 | 0.002252 |
N | 398 | A398S | Gca | Tca | 1 | 1 | B.1.1.409 | 0.002833 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.1.409 | 0.002833 |
N | 398 | A398S | Gca | Tca | 1 | 1 | B.1.1.416 | 0.000905 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.1.417 | 0.002703 |
N | 398 | A398T | Gca | Aca | 1 | 1 | B.1.1.420 | 0.001006 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.1.420 | 0.001006 |
N | 398 | A398del1 | gcA | gc- | 1 | 1 | B.1.1.425 | 0.045455 |
N | 398 | A398S | Gca | Tca | 1 | 1 | B.1.1.433 | 0.001425 |
N | 398 | A398S | Gca | Tca | 1 | 1 | B.1.1.434 | 0.000349 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.1.44 | 0.00241 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.1.453 | 0.008475 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.1.464 | 0.001473 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.1.466 | 0.008696 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.1.50 | 0.000679 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.1.507 | 0.008696 |
N | 398 | A398S | Gca | Tca | 1 | 1 | B.1.1.51 | 0.001718 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.1.523 | 0.001563 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.1.54 | 0.003021 |
N | 398 | A398S | Gca | Tca | 1 | 1 | B.1.1.63 | 0.000386 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.1.70 | 0.000341 |
N | 398 | A398S | Gca | Tca | 1 | 1 | B.1.1.83 | 0.00271 |
N | 398 | A398T | Gca | Aca | 1 | 1 | B.1.124 | 0.007812 |
N | 398 | A398S | Gca | Tca | 1 | 1 | B.1.127 | 0.002198 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.142 | 0.002899 |
N | 398 | A398T | Gca | Aca | 1 | 1 | B.1.160 | 0.000031 |
N | 398 | A398del | GCA | --- | 1 | 1 | B.1.160.16 | 0.000929 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.160.22 | 0.006757 |
N | 398 | A398S | Gca | Tca | 1 | 1 | B.1.160.8 | 0.001289 |
N | 398 | A398del | GCA | --- | 1 | 1 | B.1.162 | 0.005025 |
N | 398 | A398P | Gca | Cca | 1 | 1 | B.1.177 | 0.000013 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.177.16 | 0.000664 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.177.21 | 0.000076 |
N | 398 | A398S | Gca | Tca | 1 | 1 | B.1.177.21 | 0.000076 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.177.23 | 0.003236 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.177.32 | 0.00135 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.177.35 | 0.000691 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.177.44 | 0.000519 |
N | 398 | A398S | Gca | Tca | 1 | 1 | B.1.177.46 | 0.000918 |
N | 398 | A398S | Gca | Tca | 1 | 1 | B.1.177.5 | 0.001242 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.177.6 | 0.000977 |
N | 398 | A398S | Gca | Tca | 1 | 1 | B.1.177.62 | 0.001192 |
N | 398 | A398del | GCA | --- | 1 | 1 | B.1.177.62 | 0.001192 |
N | 398 | A398T | GcA | AcC | 1 | 1 | B.1.177.63 | 0.002703 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.177.65 | 0.000665 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.177.7 | 0.000165 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.177.72 | 0.00339 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.177.73 | 0.000566 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.177.78 | 0.009709 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.177.82 | 0.000477 |
N | 398 | A398A | gcA | gcG | 1 | 1 | B.1.177.86 | 0.000183 |
N | 398 | A398P | Gca | Cca | 1 | 1 | B.1.221 | 0.000071 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.222 | 0.001692 |
N | 398 | A398S | Gca | Tca | 1 | 1 | B.1.234 | 0.000132 |
N | 398 | A398P | GcA | CcT | 1 | 1 | B.1.242 | 0.018868 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.242 | 0.018868 |
N | 398 | A398S | Gca | Tca | 1 | 1 | B.1.258 | 0.000067 |
N | 398 | A398S | Gca | Tca | 1 | 1 | B.1.258.17 | 0.000104 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.258.17 | 0.000104 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.258.2 | 0.004505 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.301 | 0.005917 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.333 | 0.010526 |
N | 398 | A398S | Gca | Tca | 1 | 1 | B.1.336 | 0.002439 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.338 | 0.008621 |
N | 398 | A398S | Gca | Tca | 1 | 1 | B.1.351.2 | 0.000303 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.351.5 | 0.0006 |
N | 398 | A398S | Gca | Tca | 1 | 1 | B.1.356 | 0.001727 |
N | 398 | A398A | gcA | gcC | 1 | 1 | B.1.36 | 0.000146 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.36.1 | 0.00114 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.36.10 | 0.004785 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.36.27 | 0.000763 |
N | 398 | A398A | gcA | gcG | 1 | 1 | B.1.36.29 | 0.000517 |
N | 398 | A398P | Gca | Cca | 1 | 1 | B.1.36.7 | 0.004 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.361 | 0.001289 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.366 | 0.004878 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.37 | 0.014706 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.371 | 0.001122 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.389 | 0.001002 |
N | 398 | A398S | Gca | Tca | 1 | 1 | B.1.391 | 0.001127 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.395 | 0.007042 |
N | 398 | A398S | Gca | Tca | 1 | 1 | B.1.402 | 0.009804 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.404 | 0.001302 |
N | 398 | A398del | GCA | --- | 1 | 1 | B.1.415 | 0.014286 |
N | 398 | A398del | GCA | --- | 1 | 1 | B.1.416.1 | 0.001563 |
N | 398 | A398S | Gca | Tca | 1 | 1 | B.1.422 | 0.000812 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.428 | 0.00102 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.428.2 | 0.033333 |
N | 398 | A398del | GCA | --- | 1 | 1 | B.1.429 | 0.000024 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.436 | 0.001029 |
N | 398 | A398del | GCA | --- | 1 | 1 | B.1.438.1 | 0.000107 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.439 | 0.005917 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.441 | 0.009615 |
N | 398 | A398S | Gca | Tca | 1 | 1 | B.1.456 | 0.003268 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.459 | 0.004082 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.462 | 0.007246 |
N | 398 | A398E | gCa | gAa | 1 | 1 | B.1.466.2 | 0.000391 |
N | 398 | A398S | Gca | Tca | 1 | 1 | B.1.488 | 0.2 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.509 | 0.000866 |
N | 398 | A398S | Gca | Tca | 1 | 1 | B.1.510 | 0.026316 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.521 | 0.004975 |
N | 398 | A398A | gcA | gcG | 1 | 1 | B.1.526 | 0.000024 |
N | 398 | A398del | GCA | --- | 1 | 1 | B.1.526 | 0.000024 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.556 | 0.007519 |
N | 398 | A398A | gcA | gcT | 1 | 1 | B.1.560 | 0.00463 |
N | 398 | A398A | gcA | gcG | 1 | 1 | B.1.565 | 0.00081 |
N | 398 | A398S | Gca | Tca | 1 | 1 | B.1.575 | 0.000303 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.575.1 | 0.002439 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.580 | 0.004065 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.586 | 0.010989 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.588 | 0.00091 |
N | 398 | A398T | Gca | Aca | 1 | 1 | B.1.595 | 0.000261 |
N | 398 | A398S | Gca | Tca | 1 | 1 | B.1.595 | 0.000261 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.597 | 0.00463 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.612 | 0.002653 |
N | 398 | A398G | gCa | gGa | 1 | 1 | B.1.615 | 0.04 |
N | 398 | A398T | Gca | Aca | 1 | 1 | B.1.617.2 | 0.000004 |
N | 398 | A398del1 | gcA | gc- | 1 | 1 | B.1.617.2 | 0.000004 |
N | 398 | A398E | gCa | gAa | 1 | 1 | B.1.617.2 | 0.000004 |
N | 398 | A398del | GCA | --- | 1 | 1 | B.1.617.2 | 0.000004 |
N | 398 | A398A | gcA | gcG | 1 | 1 | B.1.617.3 | 0.002985 |
N | 398 | A398V | gCa | gTa | 1 | 1 | B.1.619.1 | 0.000641 |
N | 398 | A398A | gcA | gcT | 1 | 1 | B.1.621 | 0.000089 |
N | 398 | A398del | GCA | --- | 1 | 1 | B.1.621.1 | 0.000506 |
N | 398 | A398del | GCA | --- | 1 | 1 | B.1.630 | 0.005236 |
N | 398 | A398S | Gca | Tca | 1 | 1 | B.1.637 | 0.000073 |
N | 398 | A398A | gcA | gcT | 1 | 1 | B.1.637 | 0.000073 |
N | 398 | A398A | gcA | gcT | 1 | 1 | B.3 | 0.000831 |
N | 398 | A398P | Gca | Cca | 1 | 1 | B.40 | 0.000364 |
N | 398 | A398V | gCa | gTa | 1 | 1 | C.35 | 0.000774 |
N | 398 | A398V | gCa | gTa | 1 | 1 | C.36.3 | 0.000567 |
N | 398 | A398V | gCa | gTa | 1 | 1 | C.40 | 0.027778 |
N | 398 | A398P | Gca | Cca | 1 | 1 | P.1 | 0.000016 |
N | 398 | A398S | Gca | Tca | 1 | 1 | P.1.12 | 0.000484 |
N | 398 | A398V | gCa | gTa | 1 | 1 | P.1.12 | 0.000484 |
N | 398 | A398V | gCa | gTa | 1 | 1 | P.1.2 | 0.001156 |
N | 398 | A398A | gcA | gcT | 1 | 1 | P.1.2 | 0.001156 |
N | 398 | A398A | gcA | gcT | 1 | 1 | P.1.7 | 0.000319 |
N | 398 | A398V | gCa | gTa | 1 | 1 | P.6 | 0.003145 |
N | 398 | A398S | Gca | Tca | 1 | 1 | P.7 | 0.004367 |
N | 398 | A398V | gCa | gTa | 1 | 1 | Q.3 | 0.000145 |
N | 398 | A398A | gcA | gcG | 1 | 1 | Q.3 | 0.000145 |
N | 398 | A398V | gCa | gTa | 1 | 1 | R.1 | 0.00009 |
N | 398 | A398V | gCa | gTa | 1 | 1 | U.2 | 0.008772 |
N | 398 | A398V | gCa | gTa | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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