CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 393 | T393I | nonsyn | aCt | aTt | 2007 | 2007 | 1 | 29450-29452 | |
N | 393 | T393T | syn | acT | acC | 239 | 196 | 0.820084 | 29450-29452 | |
N | 393 | T393T | syn | acT | acG | 239 | 35 | 0.146444 | 29450-29452 | |
N | 393 | T393T | syn | acT | acA | 239 | 8 | 0.0334728 | 29450-29452 | |
N | 393 | T393del | del | ACT | --- | 55 | 55 | 1 | 29450-29452 | |
N | 393 | T393A | nonsyn | Act | Gct | 20 | 20 | 1 | 29450-29452 | |
N | 393 | T393P | nonsyn | Act | Cct | 19 | 19 | 1 | 29450-29452 | |
N | 393 | T393S | nonsyn | Act | Tct | 16 | 9 | 0.5625 | 29450-29452 | |
N | 393 | T393S | nonsyn | aCt | aGt | 16 | 6 | 0.375 | 29450-29452 | |
N | 393 | T393S | nonsyn | AcT | TcC | 16 | 1 | 0.0625 | 29450-29452 | |
N | 393 | T393N | nonsyn | aCt | aAt | 8 | 8 | 1 | 29450-29452 | |
N | 393 | T393V | nonsyn | ACt | GTt | 3 | 3 | 1 | 29450-29452 | |
N | 393 | T393F | nonsyn | ACt | TTt | 2 | 2 | 1 | 29450-29452 | |
N | 393 | T393del2 | del | aCT | a-- | 2 | 2 | 1 | 29450-29452 | |
N | 393 | T393R | nonsyn | aCT | aGA | 1 | 1 | 1 | 29450-29452 | |
N | 393 | T393del1 | del | aCt | a-t | 1 | 1 | 1 | 29450-29452 | |
N | 393 | T393E | nonsyn | ACT | GAA | 1 | 1 | 1 | 29450-29452 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 393 | T393I | aCt | aTt | 2007 | 2007 | All | 0.000384 |
N | 393 | T393I | aCt | aTt | 312 | 312 | B.1.1.7 | 0.000279 |
N | 393 | T393I | aCt | aTt | 247 | 247 | B.1.408 | 0.911439 |
N | 393 | T393T | acT | acC | 196 | 239 | All | 0.000037 |
N | 393 | T393T | acT | acG | 35 | 239 | All | 0.000007 |
N | 393 | T393T | acT | acA | 8 | 239 | All | 0.000002 |
N | 393 | T393I | aCt | aTt | 190 | 190 | A.3 | 0.398323 |
N | 393 | T393I | aCt | aTt | 136 | 136 | B.1.577 | 0.093471 |
N | 393 | T393I | aCt | aTt | 130 | 130 | AY.4 | 0.000202 |
N | 393 | T393I | aCt | aTt | 111 | 111 | B.1.177 | 0.001462 |
N | 393 | T393I | aCt | aTt | 102 | 102 | B.1.526 | 0.002397 |
N | 393 | T393I | aCt | aTt | 68 | 68 | B.1.2 | 0.000599 |
N | 393 | T393del | ACT | --- | 55 | 55 | All | 0.000011 |
N | 393 | T393I | aCt | aTt | 51 | 51 | B.1 | 0.000467 |
N | 393 | T393T | acT | acC | 39 | 39 | B.1.429 | 0.000918 |
N | 393 | T393T | acT | acC | 30 | 36 | B.1.1.7 | 0.000027 |
N | 393 | T393T | acT | acA | 4 | 36 | B.1.1.7 | 0.000004 |
N | 393 | T393T | acT | acG | 2 | 36 | B.1.1.7 | 0.000002 |
N | 393 | T393I | aCt | aTt | 32 | 32 | AY.3 | 0.000318 |
N | 393 | T393I | aCt | aTt | 32 | 32 | B.1.1 | 0.000581 |
N | 393 | T393I | aCt | aTt | 32 | 32 | P.1 | 0.000504 |
N | 393 | T393I | aCt | aTt | 28 | 28 | B.1.617.2 | 0.000105 |
N | 393 | T393I | aCt | aTt | 25 | 25 | AY.103 | 0.000155 |
N | 393 | T393I | aCt | aTt | 24 | 24 | B.1.1.519 | 0.000953 |
N | 393 | T393T | acT | acC | 21 | 21 | AY.5 | 0.000434 |
N | 393 | T393A | Act | Gct | 20 | 20 | All | 0.000004 |
N | 393 | T393P | Act | Cct | 19 | 19 | All | 0.000004 |
N | 393 | T393I | aCt | aTt | 19 | 19 | AY.25 | 0.000114 |
N | 393 | T393I | aCt | aTt | 19 | 19 | B.1.324 | 0.030498 |
N | 393 | T393I | aCt | aTt | 18 | 18 | B.1.177.21 | 0.001376 |
N | 393 | T393T | acT | acC | 14 | 18 | B.1.617.2 | 0.000053 |
N | 393 | T393T | acT | acG | 4 | 18 | B.1.617.2 | 0.000015 |
N | 393 | T393S | Act | Tct | 9 | 16 | All | 0.000002 |
N | 393 | T393S | aCt | aGt | 6 | 16 | All | 0.000001 |
N | 393 | T393S | AcT | TcC | 1 | 16 | All | 0 |
N | 393 | T393I | aCt | aTt | 16 | 16 | B.1.369 | 0.004564 |
N | 393 | T393I | aCt | aTt | 15 | 15 | AY.43 | 0.000066 |
N | 393 | T393T | acT | acC | 14 | 15 | B.1 | 0.000128 |
N | 393 | T393T | acT | acG | 1 | 15 | B.1 | 0.000009 |
N | 393 | T393I | aCt | aTt | 15 | 15 | B.1.160 | 0.000468 |
N | 393 | T393T | acT | acC | 14 | 14 | AY.3 | 0.000139 |
N | 393 | T393I | aCt | aTt | 12 | 12 | B.1.621 | 0.001062 |
N | 393 | T393I | aCt | aTt | 11 | 11 | AY.102 | 0.000292 |
N | 393 | T393T | acT | acC | 9 | 11 | B.1.177 | 0.000119 |
N | 393 | T393T | acT | acG | 1 | 11 | B.1.177 | 0.000013 |
N | 393 | T393T | acT | acA | 1 | 11 | B.1.177 | 0.000013 |
N | 393 | T393I | aCt | aTt | 11 | 11 | B.1.429 | 0.000259 |
N | 393 | T393I | aCt | aTt | 10 | 10 | B.1.351 | 0.000297 |
N | 393 | T393I | aCt | aTt | 10 | 10 | B.1.595 | 0.00261 |
N | 393 | T393T | acT | acG | 9 | 9 | AY.118 | 0.000564 |
N | 393 | T393I | aCt | aTt | 9 | 9 | AY.4.2 | 0.000195 |
N | 393 | T393N | aCt | aAt | 8 | 8 | All | 0.000002 |
N | 393 | T393I | aCt | aTt | 8 | 8 | AY.9 | 0.000541 |
N | 393 | T393I | aCt | aTt | 8 | 8 | B.1.1.486 | 0.012618 |
N | 393 | T393T | acT | acC | 8 | 8 | B.1.2 | 0.00007 |
N | 393 | T393I | aCt | aTt | 8 | 8 | B.1.427 | 0.000404 |
N | 393 | T393I | aCt | aTt | 8 | 8 | B.1.596 | 0.000697 |
N | 393 | T393I | aCt | aTt | 8 | 8 | P.1.1 | 0.002541 |
N | 393 | T393I | aCt | aTt | 7 | 7 | AY.26 | 0.000198 |
N | 393 | T393T | acT | acC | 7 | 7 | AY.43 | 0.000031 |
N | 393 | T393I | aCt | aTt | 7 | 7 | AY.5 | 0.000145 |
N | 393 | T393I | aCt | aTt | 7 | 7 | B.1.36.36 | 0.004214 |
N | 393 | T393I | aCt | aTt | 7 | 7 | B.1.469 | 0.025271 |
N | 393 | T393I | aCt | aTt | 7 | 7 | B.6 | 0.006369 |
N | 393 | T393I | aCt | aTt | 6 | 6 | AY.29 | 0.000095 |
N | 393 | T393T | acT | acC | 6 | 6 | AY.44 | 0.000037 |
N | 393 | T393I | aCt | aTt | 6 | 6 | AY.6 | 0.000247 |
N | 393 | T393del | ACT | --- | 6 | 6 | B.1 | 0.000055 |
N | 393 | T393I | aCt | aTt | 6 | 6 | B.1.1.311 | 0.002149 |
N | 393 | T393I | aCt | aTt | 6 | 6 | B.1.1.44 | 0.014458 |
N | 393 | T393I | aCt | aTt | 6 | 6 | N.3 | 0.034884 |
N | 393 | T393T | acT | acG | 3 | 5 | AY.4 | 0.000005 |
N | 393 | T393T | acT | acA | 1 | 5 | AY.4 | 0.000002 |
N | 393 | T393T | acT | acC | 1 | 5 | AY.4 | 0.000002 |
N | 393 | T393I | aCt | aTt | 5 | 5 | AY.44 | 0.00003 |
N | 393 | T393I | aCt | aTt | 5 | 5 | AY.58 | 0.004537 |
N | 393 | T393del | ACT | --- | 5 | 5 | B.1.1.7 | 0.000004 |
N | 393 | T393del | ACT | --- | 5 | 5 | C.37 | 0.00058 |
N | 393 | T393T | acT | acC | 5 | 5 | P.1 | 0.000079 |
N | 393 | T393I | aCt | aTt | 5 | 5 | P.2 | 0.000933 |
N | 393 | T393T | acT | acC | 2 | 4 | AY.25 | 0.000012 |
N | 393 | T393T | acT | acG | 2 | 4 | AY.25 | 0.000012 |
N | 393 | T393I | aCt | aTt | 4 | 4 | AY.75 | 0.000224 |
N | 393 | T393V | ACt | GTt | 3 | 3 | All | 0.000001 |
N | 393 | T393I | aCt | aTt | 3 | 3 | AY.113 | 0.000427 |
N | 393 | T393T | acT | acC | 3 | 3 | AY.120 | 0.000112 |
N | 393 | T393I | aCt | aTt | 3 | 3 | AY.39.1 | 0.000119 |
N | 393 | T393P | Act | Cct | 3 | 3 | AY.4 | 0.000005 |
N | 393 | T393I | aCt | aTt | 3 | 3 | AY.4.1 | 0.002212 |
N | 393 | T393I | aCt | aTt | 3 | 3 | AY.4.5 | 0.000322 |
N | 393 | T393I | aCt | aTt | 3 | 3 | AY.45 | 0.000365 |
N | 393 | T393T | acT | acG | 3 | 3 | AY.54 | 0.000286 |
N | 393 | T393I | aCt | aTt | 3 | 3 | B | 0.000383 |
N | 393 | T393del | ACT | --- | 3 | 3 | B.1.1 | 0.000054 |
N | 393 | T393I | aCt | aTt | 3 | 3 | B.1.1.10 | 0.003344 |
N | 393 | T393I | aCt | aTt | 3 | 3 | B.1.1.337 | 0.010791 |
N | 393 | T393I | aCt | aTt | 3 | 3 | B.1.1.448 | 0.006098 |
N | 393 | T393I | aCt | aTt | 3 | 3 | B.1.177.72 | 0.010169 |
N | 393 | T393T | acT | acC | 3 | 3 | B.1.177.81 | 0.000568 |
N | 393 | T393I | aCt | aTt | 3 | 3 | B.1.189 | 0.012876 |
N | 393 | T393del | ACT | --- | 3 | 3 | B.1.2 | 0.000026 |
N | 393 | T393I | aCt | aTt | 3 | 3 | B.1.206 | 0.002447 |
N | 393 | T393I | aCt | aTt | 3 | 3 | B.1.243 | 0.000209 |
N | 393 | T393I | aCt | aTt | 3 | 3 | B.1.36 | 0.000438 |
N | 393 | T393I | aCt | aTt | 3 | 3 | B.1.36.18 | 0.001261 |
N | 393 | T393I | aCt | aTt | 3 | 3 | B.1.404 | 0.003906 |
N | 393 | T393S | Act | Tct | 3 | 3 | B.1.617.2 | 0.000011 |
N | 393 | T393I | aCt | aTt | 3 | 3 | D.2 | 0.000225 |
N | 393 | T393I | aCt | aTt | 3 | 3 | Q.1 | 0.000379 |
N | 393 | T393I | aCt | aTt | 3 | 3 | Q.7 | 0.003333 |
N | 393 | T393I | aCt | aTt | 3 | 3 | Q.8 | 0.000495 |
N | 393 | T393del | ACT | --- | 2 | 2 | 0.111111 | |
N | 393 | T393P | Act | Cct | 2 | 2 | 0.111111 | |
N | 393 | T393I | aCt | aTt | 2 | 2 | A | 0.000774 |
N | 393 | T393F | ACt | TTt | 2 | 2 | All | 0 |
N | 393 | T393del2 | aCT | a-- | 2 | 2 | All | 0 |
N | 393 | T393I | aCt | aTt | 2 | 2 | AY.100 | 0.000092 |
N | 393 | T393I | aCt | aTt | 2 | 2 | AY.117 | 0.000169 |
N | 393 | T393I | aCt | aTt | 2 | 2 | AY.119 | 0.000071 |
N | 393 | T393del | ACT | --- | 2 | 2 | AY.25 | 0.000012 |
N | 393 | T393I | aCt | aTt | 2 | 2 | AY.36 | 0.000296 |
N | 393 | T393I | aCt | aTt | 2 | 2 | AY.39 | 0.000049 |
N | 393 | T393S | Act | Tct | 2 | 2 | AY.4 | 0.000003 |
N | 393 | T393del | ACT | --- | 2 | 2 | AY.4 | 0.000003 |
N | 393 | T393T | acT | acC | 2 | 2 | AY.45 | 0.000243 |
N | 393 | T393I | aCt | aTt | 2 | 2 | AY.46 | 0.000208 |
N | 393 | T393S | aCt | aGt | 2 | 2 | AY.61 | 0.00021 |
N | 393 | T393T | acT | acC | 2 | 2 | AY.75 | 0.000112 |
N | 393 | T393I | aCt | aTt | 2 | 2 | AY.84 | 0.000875 |
N | 393 | T393T | acT | acC | 2 | 2 | AY.89 | 0.009804 |
N | 393 | T393I | aCt | aTt | 2 | 2 | AY.9.2 | 0.000073 |
N | 393 | T393I | aCt | aTt | 2 | 2 | AY.98.1 | 0.000097 |
N | 393 | T393T | acT | acC | 2 | 2 | B.1.1 | 0.000036 |
N | 393 | T393I | aCt | aTt | 2 | 2 | B.1.1.214 | 0.000111 |
N | 393 | T393I | aCt | aTt | 2 | 2 | B.1.1.216 | 0.001781 |
N | 393 | T393I | aCt | aTt | 2 | 2 | B.1.1.222 | 0.000408 |
N | 393 | T393I | aCt | aTt | 2 | 2 | B.1.1.231 | 0.006192 |
N | 393 | T393I | aCt | aTt | 2 | 2 | B.1.1.25 | 0.001137 |
N | 393 | T393I | aCt | aTt | 2 | 2 | B.1.1.253 | 0.005013 |
N | 393 | T393I | aCt | aTt | 2 | 2 | B.1.1.279 | 0.002242 |
N | 393 | T393T | acT | acC | 2 | 2 | B.1.1.33 | 0.000842 |
N | 393 | T393I | aCt | aTt | 2 | 2 | B.1.1.348 | 0.001592 |
N | 393 | T393I | aCt | aTt | 2 | 2 | B.1.1.37 | 0.000386 |
N | 393 | T393I | aCt | aTt | 2 | 2 | B.1.1.384 | 0.047619 |
N | 393 | T393I | aCt | aTt | 2 | 2 | B.1.1.413 | 0.013793 |
N | 393 | T393I | aCt | aTt | 2 | 2 | B.1.1.420 | 0.002012 |
N | 393 | T393P | Act | Cct | 2 | 2 | B.1.1.7 | 0.000002 |
N | 393 | T393A | Act | Gct | 2 | 2 | B.1.1.7 | 0.000002 |
N | 393 | T393S | aCt | aGt | 2 | 2 | B.1.1.7 | 0.000002 |
N | 393 | T393I | aCt | aTt | 2 | 2 | B.1.124 | 0.015625 |
N | 393 | T393del | ACT | --- | 2 | 2 | B.1.177 | 0.000026 |
N | 393 | T393I | aCt | aTt | 2 | 2 | B.1.177.12 | 0.000303 |
N | 393 | T393I | aCt | aTt | 2 | 2 | B.1.177.33 | 0.003289 |
N | 393 | T393I | aCt | aTt | 2 | 2 | B.1.177.45 | 0.000762 |
N | 393 | T393I | aCt | aTt | 2 | 2 | B.1.177.55 | 0.004662 |
N | 393 | T393I | aCt | aTt | 2 | 2 | B.1.177.7 | 0.00033 |
N | 393 | T393I | aCt | aTt | 2 | 2 | B.1.177.86 | 0.000367 |
N | 393 | T393I | aCt | aTt | 2 | 2 | B.1.195 | 0.01005 |
N | 393 | T393I | aCt | aTt | 2 | 2 | B.1.221 | 0.000142 |
N | 393 | T393I | aCt | aTt | 2 | 2 | B.1.240 | 0.000431 |
N | 393 | T393I | aCt | aTt | 2 | 2 | B.1.258 | 0.000133 |
N | 393 | T393P | Act | Cct | 2 | 2 | B.1.36.1 | 0.002281 |
N | 393 | T393N | aCt | aAt | 2 | 2 | B.1.36.38 | 0.003284 |
N | 393 | T393I | aCt | aTt | 2 | 2 | B.1.525 | 0.000226 |
N | 393 | T393I | aCt | aTt | 2 | 2 | B.1.564 | 0.000852 |
N | 393 | T393I | aCt | aTt | 2 | 2 | B.1.575 | 0.000607 |
N | 393 | T393I | aCt | aTt | 2 | 2 | B.1.576 | 0.001813 |
N | 393 | T393T | acT | acC | 2 | 2 | B.1.609 | 0.000959 |
N | 393 | T393I | aCt | aTt | 2 | 2 | C.36.3 | 0.001134 |
N | 393 | T393A | Act | Gct | 2 | 2 | C.37 | 0.000232 |
N | 393 | T393I | aCt | aTt | 2 | 2 | C.37 | 0.000232 |
N | 393 | T393del | ACT | --- | 2 | 2 | P.1 | 0.000032 |
N | 393 | T393I | aCt | aTt | 2 | 2 | P.1.14 | 0.000096 |
N | 393 | T393T | acT | acG | 1 | 1 | A.1 | 0.000282 |
N | 393 | T393E | ACT | GAA | 1 | 1 | All | 0 |
N | 393 | T393R | aCT | aGA | 1 | 1 | All | 0 |
N | 393 | T393del1 | aCt | a-t | 1 | 1 | All | 0 |
N | 393 | T393I | aCt | aTt | 1 | 1 | AT.1 | 0.005128 |
N | 393 | T393A | Act | Gct | 1 | 1 | AY.10 | 0.00053 |
N | 393 | T393del | ACT | --- | 1 | 1 | AY.101 | 0.00049 |
N | 393 | T393T | acT | acG | 1 | 1 | AY.102 | 0.000027 |
N | 393 | T393A | Act | Gct | 1 | 1 | AY.103 | 0.000006 |
N | 393 | T393T | acT | acG | 1 | 1 | AY.103 | 0.000006 |
N | 393 | T393S | aCt | aGt | 1 | 1 | AY.107 | 0.000466 |
N | 393 | T393T | acT | acC | 1 | 1 | AY.108 | 0.001103 |
N | 393 | T393A | Act | Gct | 1 | 1 | AY.110 | 0.000113 |
N | 393 | T393del | ACT | --- | 1 | 1 | AY.114 | 0.000231 |
N | 393 | T393I | aCt | aTt | 1 | 1 | AY.116.1 | 0.000311 |
N | 393 | T393I | aCt | aTt | 1 | 1 | AY.118 | 0.000063 |
N | 393 | T393I | aCt | aTt | 1 | 1 | AY.120 | 0.000037 |
N | 393 | T393I | aCt | aTt | 1 | 1 | AY.13 | 0.000161 |
N | 393 | T393del | ACT | --- | 1 | 1 | AY.14 | 0.000088 |
N | 393 | T393N | aCt | aAt | 1 | 1 | AY.14 | 0.000088 |
N | 393 | T393I | aCt | aTt | 1 | 1 | AY.16 | 0.00038 |
N | 393 | T393I | aCt | aTt | 1 | 1 | AY.23 | 0.00007 |
N | 393 | T393A | Act | Gct | 1 | 1 | AY.23 | 0.00007 |
N | 393 | T393N | aCt | aAt | 1 | 1 | AY.23 | 0.00007 |
N | 393 | T393I | aCt | aTt | 1 | 1 | AY.23.1 | 0.000417 |
N | 393 | T393S | Act | Tct | 1 | 1 | AY.25 | 0.000006 |
N | 393 | T393del | ACT | --- | 1 | 1 | AY.26 | 0.000028 |
N | 393 | T393I | aCt | aTt | 1 | 1 | AY.32 | 0.000532 |
N | 393 | T393I | aCt | aTt | 1 | 1 | AY.34.1 | 0.00051 |
N | 393 | T393I | aCt | aTt | 1 | 1 | AY.35 | 0.000233 |
N | 393 | T393S | Act | Tct | 1 | 1 | AY.39 | 0.000025 |
N | 393 | T393A | Act | Gct | 1 | 1 | AY.4 | 0.000002 |
N | 393 | T393A | Act | Gct | 1 | 1 | AY.4.2 | 0.000022 |
N | 393 | T393P | Act | Cct | 1 | 1 | AY.4.3 | 0.000842 |
N | 393 | T393T | acT | acC | 1 | 1 | AY.4.5 | 0.000107 |
N | 393 | T393S | AcT | TcC | 1 | 1 | AY.40 | 0.000964 |
N | 393 | T393I | aCt | aTt | 1 | 1 | AY.42 | 0.00004 |
N | 393 | T393P | Act | Cct | 1 | 1 | AY.42 | 0.00004 |
N | 393 | T393S | aCt | aGt | 1 | 1 | AY.43 | 0.000004 |
N | 393 | T393A | Act | Gct | 1 | 1 | AY.43 | 0.000004 |
N | 393 | T393A | Act | Gct | 1 | 1 | AY.44 | 0.000006 |
N | 393 | T393N | aCt | aAt | 1 | 1 | AY.44 | 0.000006 |
N | 393 | T393S | Act | Tct | 1 | 1 | AY.46 | 0.000104 |
N | 393 | T393I | aCt | aTt | 1 | 1 | AY.47 | 0.000031 |
N | 393 | T393T | acT | acC | 1 | 1 | AY.47 | 0.000031 |
N | 393 | T393I | aCt | aTt | 1 | 1 | AY.49 | 0.003195 |
N | 393 | T393A | Act | Gct | 1 | 1 | AY.5 | 0.000021 |
N | 393 | T393I | aCt | aTt | 1 | 1 | AY.51 | 0.000909 |
N | 393 | T393T | acT | acG | 1 | 1 | AY.52 | 0.000814 |
N | 393 | T393R | aCT | aGA | 1 | 1 | AY.61 | 0.000105 |
N | 393 | T393I | aCt | aTt | 1 | 1 | AY.61 | 0.000105 |
N | 393 | T393T | acT | acG | 1 | 1 | AY.62 | 0.000436 |
N | 393 | T393del | ACT | --- | 1 | 1 | AY.62 | 0.000436 |
N | 393 | T393T | acT | acG | 1 | 1 | AY.69 | 0.000187 |
N | 393 | T393N | aCt | aAt | 1 | 1 | AY.69 | 0.000187 |
N | 393 | T393I | aCt | aTt | 1 | 1 | AY.70 | 0.000209 |
N | 393 | T393I | aCt | aTt | 1 | 1 | AY.76 | 0.004831 |
N | 393 | T393del | ACT | --- | 1 | 1 | AY.84 | 0.000437 |
N | 393 | T393T | acT | acC | 1 | 1 | AY.9 | 0.000068 |
N | 393 | T393I | aCt | aTt | 1 | 1 | AY.9.1 | 0.000084 |
N | 393 | T393del | ACT | --- | 1 | 1 | AY.9.2 | 0.000037 |
N | 393 | T393T | acT | acC | 1 | 1 | AY.92 | 0.000287 |
N | 393 | T393I | aCt | aTt | 1 | 1 | AY.98 | 0.000079 |
N | 393 | T393I | aCt | aTt | 1 | 1 | AY.99.2 | 0.000092 |
N | 393 | T393del2 | aCT | a-- | 1 | 1 | B | 0.000128 |
N | 393 | T393del2 | aCT | a-- | 1 | 1 | B.1 | 0.000009 |
N | 393 | T393P | Act | Cct | 1 | 1 | B.1.1 | 0.000018 |
N | 393 | T393F | ACt | TTt | 1 | 1 | B.1.1 | 0.000018 |
N | 393 | T393I | aCt | aTt | 1 | 1 | B.1.1.1 | 0.000327 |
N | 393 | T393del | ACT | --- | 1 | 1 | B.1.1.139 | 0.022727 |
N | 393 | T393I | aCt | aTt | 1 | 1 | B.1.1.161 | 0.003534 |
N | 393 | T393I | aCt | aTt | 1 | 1 | B.1.1.186 | 0.003436 |
N | 393 | T393I | aCt | aTt | 1 | 1 | B.1.1.207 | 0.001182 |
N | 393 | T393T | acT | acG | 1 | 1 | B.1.1.214 | 0.000055 |
N | 393 | T393A | Act | Gct | 1 | 1 | B.1.1.214 | 0.000055 |
N | 393 | T393del | ACT | --- | 1 | 1 | B.1.1.236 | 0.006897 |
N | 393 | T393T | acT | acA | 1 | 1 | B.1.1.25 | 0.000569 |
N | 393 | T393V | ACt | GTt | 1 | 1 | B.1.1.27 | 0.00565 |
N | 393 | T393P | Act | Cct | 1 | 1 | B.1.1.282 | 0.011628 |
N | 393 | T393P | Act | Cct | 1 | 1 | B.1.1.284 | 0.000107 |
N | 393 | T393I | aCt | aTt | 1 | 1 | B.1.1.306 | 0.000438 |
N | 393 | T393I | aCt | aTt | 1 | 1 | B.1.1.317 | 0.000412 |
N | 393 | T393T | acT | acC | 1 | 1 | B.1.1.317 | 0.000412 |
N | 393 | T393I | aCt | aTt | 1 | 1 | B.1.1.365 | 0.005587 |
N | 393 | T393A | Act | Gct | 1 | 1 | B.1.1.37 | 0.000193 |
N | 393 | T393del | ACT | --- | 1 | 1 | B.1.1.37 | 0.000193 |
N | 393 | T393I | aCt | aTt | 1 | 1 | B.1.1.432 | 0.001266 |
N | 393 | T393I | aCt | aTt | 1 | 1 | B.1.1.523 | 0.001563 |
N | 393 | T393V | ACt | GTt | 1 | 1 | B.1.1.7 | 0.000001 |
N | 393 | T393F | ACt | TTt | 1 | 1 | B.1.1.7 | 0.000001 |
N | 393 | T393E | ACT | GAA | 1 | 1 | B.1.1.7 | 0.000001 |
N | 393 | T393I | aCt | aTt | 1 | 1 | B.1.1.77 | 0.041667 |
N | 393 | T393I | aCt | aTt | 1 | 1 | B.1.139 | 0.000733 |
N | 393 | T393del | ACT | --- | 1 | 1 | B.1.160 | 0.000031 |
N | 393 | T393I | aCt | aTt | 1 | 1 | B.1.160.14 | 0.002119 |
N | 393 | T393del | ACT | --- | 1 | 1 | B.1.160.16 | 0.000929 |
N | 393 | T393del | ACT | --- | 1 | 1 | B.1.162 | 0.005025 |
N | 393 | T393A | Act | Gct | 1 | 1 | B.1.177 | 0.000013 |
N | 393 | T393P | Act | Cct | 1 | 1 | B.1.177 | 0.000013 |
N | 393 | T393I | aCt | aTt | 1 | 1 | B.1.177.10 | 0.000878 |
N | 393 | T393S | Act | Tct | 1 | 1 | B.1.177.12 | 0.000152 |
N | 393 | T393I | aCt | aTt | 1 | 1 | B.1.177.5 | 0.001242 |
N | 393 | T393I | aCt | aTt | 1 | 1 | B.1.177.54 | 0.000606 |
N | 393 | T393I | aCt | aTt | 1 | 1 | B.1.177.56 | 0.000668 |
N | 393 | T393del | ACT | --- | 1 | 1 | B.1.177.62 | 0.001192 |
N | 393 | T393del | ACT | --- | 1 | 1 | B.1.177.63 | 0.002703 |
N | 393 | T393I | aCt | aTt | 1 | 1 | B.1.177.65 | 0.000665 |
N | 393 | T393I | aCt | aTt | 1 | 1 | B.1.177.73 | 0.000566 |
N | 393 | T393I | aCt | aTt | 1 | 1 | B.1.177.8 | 0.000752 |
N | 393 | T393I | aCt | aTt | 1 | 1 | B.1.177.85 | 0.005435 |
N | 393 | T393I | aCt | aTt | 1 | 1 | B.1.239 | 0.001221 |
N | 393 | T393P | Act | Cct | 1 | 1 | B.1.242 | 0.018868 |
N | 393 | T393T | acT | acG | 1 | 1 | B.1.258.11 | 0.000396 |
N | 393 | T393I | aCt | aTt | 1 | 1 | B.1.258.17 | 0.000104 |
N | 393 | T393A | Act | Gct | 1 | 1 | B.1.338 | 0.008621 |
N | 393 | T393P | Act | Cct | 1 | 1 | B.1.351 | 0.00003 |
N | 393 | T393T | acT | acC | 1 | 1 | B.1.351 | 0.00003 |
N | 393 | T393A | Act | Gct | 1 | 1 | B.1.36.16 | 0.001425 |
N | 393 | T393I | aCt | aTt | 1 | 1 | B.1.36.17 | 0.000494 |
N | 393 | T393I | aCt | aTt | 1 | 1 | B.1.367 | 0.000792 |
N | 393 | T393del | ACT | --- | 1 | 1 | B.1.415 | 0.014286 |
N | 393 | T393del | ACT | --- | 1 | 1 | B.1.416.1 | 0.001563 |
N | 393 | T393V | ACt | GTt | 1 | 1 | B.1.427 | 0.00005 |
N | 393 | T393I | aCt | aTt | 1 | 1 | B.1.428 | 0.00102 |
N | 393 | T393del | ACT | --- | 1 | 1 | B.1.438.1 | 0.000107 |
N | 393 | T393T | acT | acC | 1 | 1 | B.1.466.2 | 0.000391 |
N | 393 | T393P | Act | Cct | 1 | 1 | B.1.525 | 0.000113 |
N | 393 | T393del | ACT | --- | 1 | 1 | B.1.526 | 0.000024 |
N | 393 | T393N | aCt | aAt | 1 | 1 | B.1.526 | 0.000024 |
N | 393 | T393I | aCt | aTt | 1 | 1 | B.1.567 | 0.003333 |
N | 393 | T393A | Act | Gct | 1 | 1 | B.1.575 | 0.000303 |
N | 393 | T393I | aCt | aTt | 1 | 1 | B.1.582 | 0.000491 |
N | 393 | T393T | acT | acG | 1 | 1 | B.1.582 | 0.000491 |
N | 393 | T393I | aCt | aTt | 1 | 1 | B.1.595.1 | 0.005848 |
N | 393 | T393I | aCt | aTt | 1 | 1 | B.1.609 | 0.000479 |
N | 393 | T393T | acT | acA | 1 | 1 | B.1.617.1 | 0.000129 |
N | 393 | T393del1 | aCt | a-t | 1 | 1 | B.1.617.2 | 0.000004 |
N | 393 | T393del | ACT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
N | 393 | T393P | Act | Cct | 1 | 1 | B.1.617.2 | 0.000004 |
N | 393 | T393A | Act | Gct | 1 | 1 | B.1.617.2 | 0.000004 |
N | 393 | T393del | ACT | --- | 1 | 1 | B.1.620 | 0.000946 |
N | 393 | T393del | ACT | --- | 1 | 1 | B.1.621.1 | 0.000506 |
N | 393 | T393I | aCt | aTt | 1 | 1 | B.1.628 | 0.000352 |
N | 393 | T393T | acT | acG | 1 | 1 | B.1.629 | 0.013333 |
N | 393 | T393del | ACT | --- | 1 | 1 | B.1.630 | 0.005236 |
N | 393 | T393I | aCt | aTt | 1 | 1 | B.1.637 | 0.000073 |
N | 393 | T393I | aCt | aTt | 1 | 1 | B.1.93 | 0.000934 |
N | 393 | T393I | aCt | aTt | 1 | 1 | B.3 | 0.000831 |
N | 393 | T393N | aCt | aAt | 1 | 1 | B.39 | 0.002331 |
N | 393 | T393I | aCt | aTt | 1 | 1 | C.11 | 0.010638 |
N | 393 | T393I | aCt | aTt | 1 | 1 | C.18 | 0.002591 |
N | 393 | T393I | aCt | aTt | 1 | 1 | P.1.10 | 0.000269 |
N | 393 | T393I | aCt | aTt | 1 | 1 | P.1.15 | 0.000232 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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