CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 393

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N393T393InonsynaCtaTt20072007129450-29452
N393T393TsynacTacC2391960.82008429450-29452
N393T393TsynacTacG239350.14644429450-29452
N393T393TsynacTacA23980.033472829450-29452
N393T393deldelACT---5555129450-29452
N393T393AnonsynActGct2020129450-29452
N393T393PnonsynActCct1919129450-29452
N393T393SnonsynActTct1690.562529450-29452
N393T393SnonsynaCtaGt1660.37529450-29452
N393T393SnonsynAcTTcC1610.062529450-29452
N393T393NnonsynaCtaAt88129450-29452
N393T393VnonsynACtGTt33129450-29452
N393T393FnonsynACtTTt22129450-29452
N393T393del2delaCTa--22129450-29452
N393T393RnonsynaCTaGA11129450-29452
N393T393del1delaCta-t11129450-29452
N393T393EnonsynACTGAA11129450-29452

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N393T393IaCtaTt20072007All0.000384
N393T393IaCtaTt312312B.1.1.70.000279
N393T393IaCtaTt247247B.1.4080.911439
N393T393TacTacC196239All0.000037
N393T393TacTacG35239All0.000007
N393T393TacTacA8239All0.000002
N393T393IaCtaTt190190A.30.398323
N393T393IaCtaTt136136B.1.5770.093471
N393T393IaCtaTt130130AY.40.000202
N393T393IaCtaTt111111B.1.1770.001462
N393T393IaCtaTt102102B.1.5260.002397
N393T393IaCtaTt6868B.1.20.000599
N393T393delACT---5555All0.000011
N393T393IaCtaTt5151B.10.000467
N393T393TacTacC3939B.1.4290.000918
N393T393TacTacC3036B.1.1.70.000027
N393T393TacTacA436B.1.1.70.000004
N393T393TacTacG236B.1.1.70.000002
N393T393IaCtaTt3232AY.30.000318
N393T393IaCtaTt3232B.1.10.000581
N393T393IaCtaTt3232P.10.000504
N393T393IaCtaTt2828B.1.617.20.000105
N393T393IaCtaTt2525AY.1030.000155
N393T393IaCtaTt2424B.1.1.5190.000953
N393T393TacTacC2121AY.50.000434
N393T393AActGct2020All0.000004
N393T393PActCct1919All0.000004
N393T393IaCtaTt1919AY.250.000114
N393T393IaCtaTt1919B.1.3240.030498
N393T393IaCtaTt1818B.1.177.210.001376
N393T393TacTacC1418B.1.617.20.000053
N393T393TacTacG418B.1.617.20.000015
N393T393SActTct916All0.000002
N393T393SaCtaGt616All0.000001
N393T393SAcTTcC116All0
N393T393IaCtaTt1616B.1.3690.004564
N393T393IaCtaTt1515AY.430.000066
N393T393TacTacC1415B.10.000128
N393T393TacTacG115B.10.000009
N393T393IaCtaTt1515B.1.1600.000468
N393T393TacTacC1414AY.30.000139
N393T393IaCtaTt1212B.1.6210.001062
N393T393IaCtaTt1111AY.1020.000292
N393T393TacTacC911B.1.1770.000119
N393T393TacTacG111B.1.1770.000013
N393T393TacTacA111B.1.1770.000013
N393T393IaCtaTt1111B.1.4290.000259
N393T393IaCtaTt1010B.1.3510.000297
N393T393IaCtaTt1010B.1.5950.00261
N393T393TacTacG99AY.1180.000564
N393T393IaCtaTt99AY.4.20.000195
N393T393NaCtaAt88All0.000002
N393T393IaCtaTt88AY.90.000541
N393T393IaCtaTt88B.1.1.4860.012618
N393T393TacTacC88B.1.20.00007
N393T393IaCtaTt88B.1.4270.000404
N393T393IaCtaTt88B.1.5960.000697
N393T393IaCtaTt88P.1.10.002541
N393T393IaCtaTt77AY.260.000198
N393T393TacTacC77AY.430.000031
N393T393IaCtaTt77AY.50.000145
N393T393IaCtaTt77B.1.36.360.004214
N393T393IaCtaTt77B.1.4690.025271
N393T393IaCtaTt77B.60.006369
N393T393IaCtaTt66AY.290.000095
N393T393TacTacC66AY.440.000037
N393T393IaCtaTt66AY.60.000247
N393T393delACT---66B.10.000055
N393T393IaCtaTt66B.1.1.3110.002149
N393T393IaCtaTt66B.1.1.440.014458
N393T393IaCtaTt66N.30.034884
N393T393TacTacG35AY.40.000005
N393T393TacTacA15AY.40.000002
N393T393TacTacC15AY.40.000002
N393T393IaCtaTt55AY.440.00003
N393T393IaCtaTt55AY.580.004537
N393T393delACT---55B.1.1.70.000004
N393T393delACT---55C.370.00058
N393T393TacTacC55P.10.000079
N393T393IaCtaTt55P.20.000933
N393T393TacTacC24AY.250.000012
N393T393TacTacG24AY.250.000012
N393T393IaCtaTt44AY.750.000224
N393T393VACtGTt33All0.000001
N393T393IaCtaTt33AY.1130.000427
N393T393TacTacC33AY.1200.000112
N393T393IaCtaTt33AY.39.10.000119
N393T393PActCct33AY.40.000005
N393T393IaCtaTt33AY.4.10.002212
N393T393IaCtaTt33AY.4.50.000322
N393T393IaCtaTt33AY.450.000365
N393T393TacTacG33AY.540.000286
N393T393IaCtaTt33B0.000383
N393T393delACT---33B.1.10.000054
N393T393IaCtaTt33B.1.1.100.003344
N393T393IaCtaTt33B.1.1.3370.010791
N393T393IaCtaTt33B.1.1.4480.006098
N393T393IaCtaTt33B.1.177.720.010169
N393T393TacTacC33B.1.177.810.000568
N393T393IaCtaTt33B.1.1890.012876
N393T393delACT---33B.1.20.000026
N393T393IaCtaTt33B.1.2060.002447
N393T393IaCtaTt33B.1.2430.000209
N393T393IaCtaTt33B.1.360.000438
N393T393IaCtaTt33B.1.36.180.001261
N393T393IaCtaTt33B.1.4040.003906
N393T393SActTct33B.1.617.20.000011
N393T393IaCtaTt33D.20.000225
N393T393IaCtaTt33Q.10.000379
N393T393IaCtaTt33Q.70.003333
N393T393IaCtaTt33Q.80.000495
N393T393delACT---220.111111
N393T393PActCct220.111111
N393T393IaCtaTt22A0.000774
N393T393FACtTTt22All0
N393T393del2aCTa--22All0
N393T393IaCtaTt22AY.1000.000092
N393T393IaCtaTt22AY.1170.000169
N393T393IaCtaTt22AY.1190.000071
N393T393delACT---22AY.250.000012
N393T393IaCtaTt22AY.360.000296
N393T393IaCtaTt22AY.390.000049
N393T393SActTct22AY.40.000003
N393T393delACT---22AY.40.000003
N393T393TacTacC22AY.450.000243
N393T393IaCtaTt22AY.460.000208
N393T393SaCtaGt22AY.610.00021
N393T393TacTacC22AY.750.000112
N393T393IaCtaTt22AY.840.000875
N393T393TacTacC22AY.890.009804
N393T393IaCtaTt22AY.9.20.000073
N393T393IaCtaTt22AY.98.10.000097
N393T393TacTacC22B.1.10.000036
N393T393IaCtaTt22B.1.1.2140.000111
N393T393IaCtaTt22B.1.1.2160.001781
N393T393IaCtaTt22B.1.1.2220.000408
N393T393IaCtaTt22B.1.1.2310.006192
N393T393IaCtaTt22B.1.1.250.001137
N393T393IaCtaTt22B.1.1.2530.005013
N393T393IaCtaTt22B.1.1.2790.002242
N393T393TacTacC22B.1.1.330.000842
N393T393IaCtaTt22B.1.1.3480.001592
N393T393IaCtaTt22B.1.1.370.000386
N393T393IaCtaTt22B.1.1.3840.047619
N393T393IaCtaTt22B.1.1.4130.013793
N393T393IaCtaTt22B.1.1.4200.002012
N393T393PActCct22B.1.1.70.000002
N393T393AActGct22B.1.1.70.000002
N393T393SaCtaGt22B.1.1.70.000002
N393T393IaCtaTt22B.1.1240.015625
N393T393delACT---22B.1.1770.000026
N393T393IaCtaTt22B.1.177.120.000303
N393T393IaCtaTt22B.1.177.330.003289
N393T393IaCtaTt22B.1.177.450.000762
N393T393IaCtaTt22B.1.177.550.004662
N393T393IaCtaTt22B.1.177.70.00033
N393T393IaCtaTt22B.1.177.860.000367
N393T393IaCtaTt22B.1.1950.01005
N393T393IaCtaTt22B.1.2210.000142
N393T393IaCtaTt22B.1.2400.000431
N393T393IaCtaTt22B.1.2580.000133
N393T393PActCct22B.1.36.10.002281
N393T393NaCtaAt22B.1.36.380.003284
N393T393IaCtaTt22B.1.5250.000226
N393T393IaCtaTt22B.1.5640.000852
N393T393IaCtaTt22B.1.5750.000607
N393T393IaCtaTt22B.1.5760.001813
N393T393TacTacC22B.1.6090.000959
N393T393IaCtaTt22C.36.30.001134
N393T393AActGct22C.370.000232
N393T393IaCtaTt22C.370.000232
N393T393delACT---22P.10.000032
N393T393IaCtaTt22P.1.140.000096
N393T393TacTacG11A.10.000282
N393T393EACTGAA11All0
N393T393RaCTaGA11All0
N393T393del1aCta-t11All0
N393T393IaCtaTt11AT.10.005128
N393T393AActGct11AY.100.00053
N393T393delACT---11AY.1010.00049
N393T393TacTacG11AY.1020.000027
N393T393AActGct11AY.1030.000006
N393T393TacTacG11AY.1030.000006
N393T393SaCtaGt11AY.1070.000466
N393T393TacTacC11AY.1080.001103
N393T393AActGct11AY.1100.000113
N393T393delACT---11AY.1140.000231
N393T393IaCtaTt11AY.116.10.000311
N393T393IaCtaTt11AY.1180.000063
N393T393IaCtaTt11AY.1200.000037
N393T393IaCtaTt11AY.130.000161
N393T393delACT---11AY.140.000088
N393T393NaCtaAt11AY.140.000088
N393T393IaCtaTt11AY.160.00038
N393T393IaCtaTt11AY.230.00007
N393T393AActGct11AY.230.00007
N393T393NaCtaAt11AY.230.00007
N393T393IaCtaTt11AY.23.10.000417
N393T393SActTct11AY.250.000006
N393T393delACT---11AY.260.000028
N393T393IaCtaTt11AY.320.000532
N393T393IaCtaTt11AY.34.10.00051
N393T393IaCtaTt11AY.350.000233
N393T393SActTct11AY.390.000025
N393T393AActGct11AY.40.000002
N393T393AActGct11AY.4.20.000022
N393T393PActCct11AY.4.30.000842
N393T393TacTacC11AY.4.50.000107
N393T393SAcTTcC11AY.400.000964
N393T393IaCtaTt11AY.420.00004
N393T393PActCct11AY.420.00004
N393T393SaCtaGt11AY.430.000004
N393T393AActGct11AY.430.000004
N393T393AActGct11AY.440.000006
N393T393NaCtaAt11AY.440.000006
N393T393SActTct11AY.460.000104
N393T393IaCtaTt11AY.470.000031
N393T393TacTacC11AY.470.000031
N393T393IaCtaTt11AY.490.003195
N393T393AActGct11AY.50.000021
N393T393IaCtaTt11AY.510.000909
N393T393TacTacG11AY.520.000814
N393T393RaCTaGA11AY.610.000105
N393T393IaCtaTt11AY.610.000105
N393T393TacTacG11AY.620.000436
N393T393delACT---11AY.620.000436
N393T393TacTacG11AY.690.000187
N393T393NaCtaAt11AY.690.000187
N393T393IaCtaTt11AY.700.000209
N393T393IaCtaTt11AY.760.004831
N393T393delACT---11AY.840.000437
N393T393TacTacC11AY.90.000068
N393T393IaCtaTt11AY.9.10.000084
N393T393delACT---11AY.9.20.000037
N393T393TacTacC11AY.920.000287
N393T393IaCtaTt11AY.980.000079
N393T393IaCtaTt11AY.99.20.000092
N393T393del2aCTa--11B0.000128
N393T393del2aCTa--11B.10.000009
N393T393PActCct11B.1.10.000018
N393T393FACtTTt11B.1.10.000018
N393T393IaCtaTt11B.1.1.10.000327
N393T393delACT---11B.1.1.1390.022727
N393T393IaCtaTt11B.1.1.1610.003534
N393T393IaCtaTt11B.1.1.1860.003436
N393T393IaCtaTt11B.1.1.2070.001182
N393T393TacTacG11B.1.1.2140.000055
N393T393AActGct11B.1.1.2140.000055
N393T393delACT---11B.1.1.2360.006897
N393T393TacTacA11B.1.1.250.000569
N393T393VACtGTt11B.1.1.270.00565
N393T393PActCct11B.1.1.2820.011628
N393T393PActCct11B.1.1.2840.000107
N393T393IaCtaTt11B.1.1.3060.000438
N393T393IaCtaTt11B.1.1.3170.000412
N393T393TacTacC11B.1.1.3170.000412
N393T393IaCtaTt11B.1.1.3650.005587
N393T393AActGct11B.1.1.370.000193
N393T393delACT---11B.1.1.370.000193
N393T393IaCtaTt11B.1.1.4320.001266
N393T393IaCtaTt11B.1.1.5230.001563
N393T393VACtGTt11B.1.1.70.000001
N393T393FACtTTt11B.1.1.70.000001
N393T393EACTGAA11B.1.1.70.000001
N393T393IaCtaTt11B.1.1.770.041667
N393T393IaCtaTt11B.1.1390.000733
N393T393delACT---11B.1.1600.000031
N393T393IaCtaTt11B.1.160.140.002119
N393T393delACT---11B.1.160.160.000929
N393T393delACT---11B.1.1620.005025
N393T393AActGct11B.1.1770.000013
N393T393PActCct11B.1.1770.000013
N393T393IaCtaTt11B.1.177.100.000878
N393T393SActTct11B.1.177.120.000152
N393T393IaCtaTt11B.1.177.50.001242
N393T393IaCtaTt11B.1.177.540.000606
N393T393IaCtaTt11B.1.177.560.000668
N393T393delACT---11B.1.177.620.001192
N393T393delACT---11B.1.177.630.002703
N393T393IaCtaTt11B.1.177.650.000665
N393T393IaCtaTt11B.1.177.730.000566
N393T393IaCtaTt11B.1.177.80.000752
N393T393IaCtaTt11B.1.177.850.005435
N393T393IaCtaTt11B.1.2390.001221
N393T393PActCct11B.1.2420.018868
N393T393TacTacG11B.1.258.110.000396
N393T393IaCtaTt11B.1.258.170.000104
N393T393AActGct11B.1.3380.008621
N393T393PActCct11B.1.3510.00003
N393T393TacTacC11B.1.3510.00003
N393T393AActGct11B.1.36.160.001425
N393T393IaCtaTt11B.1.36.170.000494
N393T393IaCtaTt11B.1.3670.000792
N393T393delACT---11B.1.4150.014286
N393T393delACT---11B.1.416.10.001563
N393T393VACtGTt11B.1.4270.00005
N393T393IaCtaTt11B.1.4280.00102
N393T393delACT---11B.1.438.10.000107
N393T393TacTacC11B.1.466.20.000391
N393T393PActCct11B.1.5250.000113
N393T393delACT---11B.1.5260.000024
N393T393NaCtaAt11B.1.5260.000024
N393T393IaCtaTt11B.1.5670.003333
N393T393AActGct11B.1.5750.000303
N393T393IaCtaTt11B.1.5820.000491
N393T393TacTacG11B.1.5820.000491
N393T393IaCtaTt11B.1.595.10.005848
N393T393IaCtaTt11B.1.6090.000479
N393T393TacTacA11B.1.617.10.000129
N393T393del1aCta-t11B.1.617.20.000004
N393T393delACT---11B.1.617.20.000004
N393T393PActCct11B.1.617.20.000004
N393T393AActGct11B.1.617.20.000004
N393T393delACT---11B.1.6200.000946
N393T393delACT---11B.1.621.10.000506
N393T393IaCtaTt11B.1.6280.000352
N393T393TacTacG11B.1.6290.013333
N393T393delACT---11B.1.6300.005236
N393T393IaCtaTt11B.1.6370.000073
N393T393IaCtaTt11B.1.930.000934
N393T393IaCtaTt11B.30.000831
N393T393NaCtaAt11B.390.002331
N393T393IaCtaTt11C.110.010638
N393T393IaCtaTt11C.180.002591
N393T393IaCtaTt11P.1.100.000269
N393T393IaCtaTt11P.1.150.000232