CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 39 | Q39L | nonsyn | cAa | cTa | 689 | 689 | 1 | 28388-28390 | |
N | 39 | Q39Q | syn | caA | caG | 355 | 355 | 1 | 28388-28390 | |
N | 39 | Q39K | nonsyn | Caa | Aaa | 74 | 74 | 1 | 28388-28390 | |
N | 39 | Q39H | nonsyn | caA | caC | 52 | 38 | 0.730769 | 28388-28390 | |
N | 39 | Q39H | nonsyn | caA | caT | 52 | 14 | 0.269231 | 28388-28390 | |
N | 39 | Q39E | nonsyn | Caa | Gaa | 51 | 51 | 1 | 28388-28390 | |
N | 39 | Q39R | nonsyn | cAa | cGa | 45 | 45 | 1 | 28388-28390 | |
N | 39 | Q39del | del | CAA | --- | 41 | 41 | 1 | 28388-28390 | |
N | 39 | Q39X | nonsyn | Caa | Taa | 31 | 30 | 0.967742 | 28388-28390 | |
N | 39 | Q39X | nonsyn | CAa | TGa | 31 | 1 | 0.0322581 | 28388-28390 | |
N | 39 | Q39P | nonsyn | cAa | cCa | 9 | 8 | 0.888889 | 28388-28390 | |
N | 39 | Q39P | nonsyn | cAA | cCC | 9 | 1 | 0.111111 | 28388-28390 | |
N | 39 | Q39del1 | del | cAa | c-a | 2 | 2 | 1 | 28388-28390 | |
N | 39 | Q39T | nonsyn | CAa | ACa | 2 | 1 | 0.5 | 28388-28390 | |
N | 39 | Q39T | nonsyn | CAA | ACC | 2 | 1 | 0.5 | 28388-28390 | |
N | 39 | Q39N | nonsyn | CaA | AaC | 1 | 1 | 1 | 28388-28390 | |
N | 39 | Q39S | nonsyn | CAA | TCG | 1 | 1 | 1 | 28388-28390 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 39 | Q39L | cAa | cTa | 689 | 689 | All | 0.000132 |
N | 39 | Q39Q | caA | caG | 355 | 355 | All | 0.000068 |
N | 39 | Q39L | cAa | cTa | 179 | 179 | B.1.337 | 1 |
N | 39 | Q39L | cAa | cTa | 165 | 165 | AY.9.2 | 0.00606 |
N | 39 | Q39L | cAa | cTa | 103 | 103 | B.1.1.7 | 0.000092 |
N | 39 | Q39Q | caA | caG | 76 | 76 | AY.4 | 0.000118 |
N | 39 | Q39K | Caa | Aaa | 74 | 74 | All | 0.000014 |
N | 39 | Q39K | Caa | Aaa | 58 | 58 | B.1.575 | 0.017597 |
N | 39 | Q39H | caA | caC | 38 | 52 | All | 0.000007 |
N | 39 | Q39H | caA | caT | 14 | 52 | All | 0.000003 |
N | 39 | Q39E | Caa | Gaa | 51 | 51 | All | 0.00001 |
N | 39 | Q39R | cAa | cGa | 45 | 45 | All | 0.000009 |
N | 39 | Q39del | CAA | --- | 41 | 41 | All | 0.000008 |
N | 39 | Q39L | cAa | cTa | 36 | 36 | B.1.1.297 | 0.080537 |
N | 39 | Q39Q | caA | caG | 36 | 36 | B.1.1.7 | 0.000032 |
N | 39 | Q39Q | caA | caG | 33 | 33 | AY.4.2 | 0.000716 |
N | 39 | Q39E | Caa | Gaa | 33 | 33 | AY.5 | 0.000681 |
N | 39 | Q39L | cAa | cTa | 32 | 32 | AY.98.1 | 0.00155 |
N | 39 | Q39X | Caa | Taa | 30 | 31 | All | 0.000006 |
N | 39 | Q39X | CAa | TGa | 1 | 31 | All | 0 |
N | 39 | Q39Q | caA | caG | 20 | 20 | B.1.427 | 0.00101 |
N | 39 | Q39L | cAa | cTa | 19 | 19 | AY.4 | 0.00003 |
N | 39 | Q39Q | caA | caG | 19 | 19 | AY.46 | 0.001978 |
N | 39 | Q39H | caA | caC | 17 | 17 | P.1.12 | 0.008228 |
N | 39 | Q39Q | caA | caG | 16 | 16 | AY.44 | 0.000097 |
N | 39 | Q39L | cAa | cTa | 16 | 16 | B.1.400 | 0.006864 |
N | 39 | Q39Q | caA | caG | 15 | 15 | AY.43 | 0.000066 |
N | 39 | Q39Q | caA | caG | 15 | 15 | B.1 | 0.000137 |
N | 39 | Q39Q | caA | caG | 15 | 15 | C.16 | 0.015907 |
N | 39 | Q39L | cAa | cTa | 12 | 12 | AY.3 | 0.000119 |
N | 39 | Q39L | cAa | cTa | 10 | 10 | B.1.2 | 0.000088 |
N | 39 | Q39L | cAa | cTa | 10 | 10 | B.1.243 | 0.000696 |
N | 39 | Q39P | cAa | cCa | 8 | 9 | All | 0.000002 |
N | 39 | Q39P | cAA | cCC | 1 | 9 | All | 0 |
N | 39 | Q39L | cAa | cTa | 9 | 9 | AY.44 | 0.000055 |
N | 39 | Q39L | cAa | cTa | 9 | 9 | B.1 | 0.000082 |
N | 39 | Q39del | CAA | --- | 9 | 9 | B.1.1.7 | 0.000008 |
N | 39 | Q39Q | caA | caG | 9 | 9 | P.1 | 0.000142 |
N | 39 | Q39Q | caA | caG | 8 | 8 | AE.8 | 0.003912 |
N | 39 | Q39R | cAa | cGa | 8 | 8 | AY.3 | 0.00008 |
N | 39 | Q39Q | caA | caG | 8 | 8 | B.1.2 | 0.00007 |
N | 39 | Q39Q | caA | caG | 7 | 7 | AY.114 | 0.001618 |
N | 39 | Q39L | cAa | cTa | 6 | 6 | B.1.1.277 | 0.004552 |
N | 39 | Q39Q | caA | caG | 6 | 6 | B.1.617.2 | 0.000023 |
N | 39 | Q39P | cAa | cCa | 5 | 5 | AY.103 | 0.000031 |
N | 39 | Q39L | cAa | cTa | 5 | 5 | AY.25 | 0.00003 |
N | 39 | Q39Q | caA | caG | 5 | 5 | AY.29 | 0.000079 |
N | 39 | Q39del | CAA | --- | 5 | 5 | AY.4 | 0.000008 |
N | 39 | Q39Q | caA | caG | 5 | 5 | AY.53 | 0.001438 |
N | 39 | Q39Q | caA | caG | 5 | 5 | AZ.2 | 0.004105 |
N | 39 | Q39Q | caA | caG | 5 | 5 | B.1.1.519 | 0.000199 |
N | 39 | Q39K | Caa | Aaa | 5 | 5 | B.1.2 | 0.000044 |
N | 39 | Q39Q | caA | caG | 5 | 5 | B.1.258 | 0.000333 |
N | 39 | Q39L | cAa | cTa | 5 | 5 | B.1.617.2 | 0.000019 |
N | 39 | Q39X | Caa | Taa | 5 | 5 | D.2 | 0.000375 |
N | 39 | Q39Q | caA | caG | 4 | 4 | AY.103 | 0.000025 |
N | 39 | Q39L | cAa | cTa | 4 | 4 | AY.119 | 0.000141 |
N | 39 | Q39L | cAa | cTa | 4 | 4 | AY.12 | 0.001264 |
N | 39 | Q39del | CAA | --- | 4 | 4 | AY.5 | 0.000083 |
N | 39 | Q39L | cAa | cTa | 4 | 4 | B.1.1.214 | 0.000222 |
N | 39 | Q39X | Caa | Taa | 4 | 4 | B.1.1.7 | 0.000004 |
N | 39 | Q39Q | caA | caG | 4 | 4 | B.1.177 | 0.000053 |
N | 39 | Q39R | cAa | cGa | 4 | 4 | B.1.177 | 0.000053 |
N | 39 | Q39H | caA | caC | 4 | 4 | B.1.2 | 0.000035 |
N | 39 | Q39R | cAa | cGa | 4 | 4 | B.1.258 | 0.000266 |
N | 39 | Q39L | cAa | cTa | 4 | 4 | B.1.617.1 | 0.000516 |
N | 39 | Q39L | cAa | cTa | 4 | 4 | C.35 | 0.003096 |
N | 39 | Q39L | cAa | cTa | 4 | 4 | P.1 | 0.000063 |
N | 39 | Q39L | cAa | cTa | 3 | 3 | AY.103 | 0.000019 |
N | 39 | Q39Q | caA | caG | 3 | 3 | AY.111 | 0.000549 |
N | 39 | Q39L | cAa | cTa | 3 | 3 | AY.20 | 0.000117 |
N | 39 | Q39R | cAa | cGa | 3 | 3 | AY.26 | 0.000085 |
N | 39 | Q39E | Caa | Gaa | 3 | 3 | AY.4 | 0.000005 |
N | 39 | Q39H | caA | caC | 3 | 3 | AY.43 | 0.000013 |
N | 39 | Q39del | CAA | --- | 3 | 3 | AY.43 | 0.000013 |
N | 39 | Q39X | Caa | Taa | 3 | 3 | B.1 | 0.000027 |
N | 39 | Q39K | Caa | Aaa | 3 | 3 | B.1 | 0.000027 |
N | 39 | Q39H | caA | caC | 3 | 3 | B.1.1 | 0.000054 |
N | 39 | Q39L | cAa | cTa | 3 | 3 | B.1.1.10 | 0.003344 |
N | 39 | Q39L | cAa | cTa | 3 | 3 | B.1.1.25 | 0.001706 |
N | 39 | Q39L | cAa | cTa | 3 | 3 | B.1.1.311 | 0.001074 |
N | 39 | Q39Q | caA | caG | 3 | 3 | B.1.1.63 | 0.001157 |
N | 39 | Q39E | Caa | Gaa | 3 | 3 | B.1.1.7 | 0.000003 |
N | 39 | Q39X | Caa | Taa | 3 | 3 | B.1.2 | 0.000026 |
N | 39 | Q39R | cAa | cGa | 3 | 3 | B.1.2 | 0.000026 |
N | 39 | Q39H | caA | caC | 3 | 3 | B.1.617.2 | 0.000011 |
N | 39 | Q39del | CAA | --- | 3 | 3 | B.1.617.2 | 0.000011 |
N | 39 | Q39E | Caa | Gaa | 3 | 3 | P.3 | 0.004785 |
N | 39 | Q39P | cAa | cCa | 1 | 2 | 0.055556 | |
N | 39 | Q39T | CAA | ACC | 1 | 2 | 0.055556 | |
N | 39 | Q39T | CAa | ACa | 1 | 2 | 0.055556 | |
N | 39 | Q39P | cAA | cCC | 1 | 2 | 0.055556 | |
N | 39 | Q39del1 | cAa | c-a | 2 | 2 | All | 0 |
N | 39 | Q39T | CAa | ACa | 1 | 2 | All | 0 |
N | 39 | Q39T | CAA | ACC | 1 | 2 | All | 0 |
N | 39 | Q39L | cAa | cTa | 2 | 2 | AY.102 | 0.000053 |
N | 39 | Q39H | caA | caT | 2 | 2 | AY.116 | 0.000574 |
N | 39 | Q39L | cAa | cTa | 2 | 2 | AY.23 | 0.000139 |
N | 39 | Q39del | CAA | --- | 2 | 2 | AY.23 | 0.000139 |
N | 39 | Q39Q | caA | caG | 2 | 2 | AY.25 | 0.000012 |
N | 39 | Q39H | caA | caT | 2 | 2 | AY.3 | 0.00002 |
N | 39 | Q39Q | caA | caG | 2 | 2 | AY.35 | 0.000466 |
N | 39 | Q39H | caA | caC | 2 | 2 | AY.39 | 0.000049 |
N | 39 | Q39Q | caA | caG | 2 | 2 | AY.39 | 0.000049 |
N | 39 | Q39del | CAA | --- | 2 | 2 | AY.46 | 0.000208 |
N | 39 | Q39L | cAa | cTa | 2 | 2 | AY.5 | 0.000041 |
N | 39 | Q39L | cAa | cTa | 2 | 2 | AY.61 | 0.00021 |
N | 39 | Q39E | Caa | Gaa | 2 | 2 | AY.85 | 0.000854 |
N | 39 | Q39R | cAa | cGa | 2 | 2 | AZ.3 | 0.00304 |
N | 39 | Q39X | Caa | Taa | 2 | 2 | B.1.1 | 0.000036 |
N | 39 | Q39Q | caA | caG | 2 | 2 | B.1.1.28 | 0.000622 |
N | 39 | Q39L | cAa | cTa | 2 | 2 | B.1.1.306 | 0.000877 |
N | 39 | Q39H | caA | caC | 2 | 2 | B.1.1.398 | 0.006452 |
N | 39 | Q39H | caA | caC | 1 | 2 | B.1.1.7 | 0.000001 |
N | 39 | Q39H | caA | caT | 1 | 2 | B.1.1.7 | 0.000001 |
N | 39 | Q39L | cAa | cTa | 2 | 2 | B.1.1.70 | 0.000682 |
N | 39 | Q39Q | caA | caG | 2 | 2 | B.1.36 | 0.000292 |
N | 39 | Q39R | cAa | cGa | 2 | 2 | B.1.36.1 | 0.002281 |
N | 39 | Q39L | cAa | cTa | 2 | 2 | B.1.428 | 0.002041 |
N | 39 | Q39L | cAa | cTa | 2 | 2 | B.1.596 | 0.000174 |
N | 39 | Q39Q | caA | caG | 2 | 2 | C.37 | 0.000232 |
N | 39 | Q39H | caA | caC | 1 | 1 | 0.055556 | |
N | 39 | Q39K | Caa | Aaa | 1 | 1 | 0.055556 | |
N | 39 | Q39R | cAa | cGa | 1 | 1 | 0.055556 | |
N | 39 | Q39N | CaA | AaC | 1 | 1 | 0.055556 | |
N | 39 | Q39R | cAa | cGa | 1 | 1 | A.23.1 | 0.000704 |
N | 39 | Q39S | CAA | TCG | 1 | 1 | All | 0 |
N | 39 | Q39N | CaA | AaC | 1 | 1 | All | 0 |
N | 39 | Q39Q | caA | caG | 1 | 1 | AY.102 | 0.000027 |
N | 39 | Q39R | cAa | cGa | 1 | 1 | AY.103 | 0.000006 |
N | 39 | Q39X | Caa | Taa | 1 | 1 | AY.110 | 0.000113 |
N | 39 | Q39E | Caa | Gaa | 1 | 1 | AY.117 | 0.000085 |
N | 39 | Q39Q | caA | caG | 1 | 1 | AY.119 | 0.000035 |
N | 39 | Q39K | Caa | Aaa | 1 | 1 | AY.120 | 0.000037 |
N | 39 | Q39L | cAa | cTa | 1 | 1 | AY.120 | 0.000037 |
N | 39 | Q39E | Caa | Gaa | 1 | 1 | AY.22 | 0.002092 |
N | 39 | Q39K | Caa | Aaa | 1 | 1 | AY.25 | 0.000006 |
N | 39 | Q39R | cAa | cGa | 1 | 1 | AY.25 | 0.000006 |
N | 39 | Q39L | cAa | cTa | 1 | 1 | AY.26 | 0.000028 |
N | 39 | Q39H | caA | caT | 1 | 1 | AY.26 | 0.000028 |
N | 39 | Q39E | Caa | Gaa | 1 | 1 | AY.29 | 0.000016 |
N | 39 | Q39H | caA | caT | 1 | 1 | AY.29 | 0.000016 |
N | 39 | Q39K | Caa | Aaa | 1 | 1 | AY.39 | 0.000025 |
N | 39 | Q39E | Caa | Gaa | 1 | 1 | AY.39.1 | 0.00004 |
N | 39 | Q39Q | caA | caG | 1 | 1 | AY.39.1 | 0.00004 |
N | 39 | Q39P | cAa | cCa | 1 | 1 | AY.4 | 0.000002 |
N | 39 | Q39K | Caa | Aaa | 1 | 1 | AY.4 | 0.000002 |
N | 39 | Q39L | cAa | cTa | 1 | 1 | AY.4.2 | 0.000022 |
N | 39 | Q39R | cAa | cGa | 1 | 1 | AY.4.2 | 0.000022 |
N | 39 | Q39del | CAA | --- | 1 | 1 | AY.4.4 | 0.000409 |
N | 39 | Q39P | cAa | cCa | 1 | 1 | AY.43 | 0.000004 |
N | 39 | Q39L | cAa | cTa | 1 | 1 | AY.43 | 0.000004 |
N | 39 | Q39del | CAA | --- | 1 | 1 | AY.44 | 0.000006 |
N | 39 | Q39X | CAa | TGa | 1 | 1 | AY.44 | 0.000006 |
N | 39 | Q39L | cAa | cTa | 1 | 1 | AY.45 | 0.000122 |
N | 39 | Q39del | CAA | --- | 1 | 1 | AY.46.6 | 0.000072 |
N | 39 | Q39Q | caA | caG | 1 | 1 | AY.47 | 0.000031 |
N | 39 | Q39H | caA | caT | 1 | 1 | AY.47 | 0.000031 |
N | 39 | Q39Q | caA | caG | 1 | 1 | AY.5.3 | 0.000337 |
N | 39 | Q39del | CAA | --- | 1 | 1 | AY.5.3 | 0.000337 |
N | 39 | Q39L | cAa | cTa | 1 | 1 | AY.54 | 0.000095 |
N | 39 | Q39H | caA | caT | 1 | 1 | AY.59 | 0.00053 |
N | 39 | Q39R | cAa | cGa | 1 | 1 | AY.6 | 0.000041 |
N | 39 | Q39del | CAA | --- | 1 | 1 | AY.60 | 0.000938 |
N | 39 | Q39L | cAa | cTa | 1 | 1 | AY.75.1 | 0.00018 |
N | 39 | Q39X | Caa | Taa | 1 | 1 | AY.75.1 | 0.00018 |
N | 39 | Q39Q | caA | caG | 1 | 1 | AY.9.1 | 0.000084 |
N | 39 | Q39del | CAA | --- | 1 | 1 | AY.9.1 | 0.000084 |
N | 39 | Q39K | Caa | Aaa | 1 | 1 | AY.98 | 0.000079 |
N | 39 | Q39del | CAA | --- | 1 | 1 | AY.99 | 0.001049 |
N | 39 | Q39Q | caA | caG | 1 | 1 | AY.99.2 | 0.000092 |
N | 39 | Q39R | cAa | cGa | 1 | 1 | B | 0.000128 |
N | 39 | Q39E | Caa | Gaa | 1 | 1 | B.1 | 0.000009 |
N | 39 | Q39R | cAa | cGa | 1 | 1 | B.1 | 0.000009 |
N | 39 | Q39del1 | cAa | c-a | 1 | 1 | B.1 | 0.000009 |
N | 39 | Q39del | CAA | --- | 1 | 1 | B.1.1 | 0.000018 |
N | 39 | Q39Q | caA | caG | 1 | 1 | B.1.1 | 0.000018 |
N | 39 | Q39R | cAa | cGa | 1 | 1 | B.1.1 | 0.000018 |
N | 39 | Q39del | CAA | --- | 1 | 1 | B.1.1.139 | 0.022727 |
N | 39 | Q39del | CAA | --- | 1 | 1 | B.1.1.216 | 0.00089 |
N | 39 | Q39L | cAa | cTa | 1 | 1 | B.1.1.222 | 0.000204 |
N | 39 | Q39X | Caa | Taa | 1 | 1 | B.1.1.227 | 0.004348 |
N | 39 | Q39L | cAa | cTa | 1 | 1 | B.1.1.263 | 0.001558 |
N | 39 | Q39X | Caa | Taa | 1 | 1 | B.1.1.267 | 0.010101 |
N | 39 | Q39Q | caA | caG | 1 | 1 | B.1.1.286 | 0.002899 |
N | 39 | Q39H | caA | caT | 1 | 1 | B.1.1.303 | 0.002762 |
N | 39 | Q39L | cAa | cTa | 1 | 1 | B.1.1.317 | 0.000412 |
N | 39 | Q39E | Caa | Gaa | 1 | 1 | B.1.1.317 | 0.000412 |
N | 39 | Q39L | cAa | cTa | 1 | 1 | B.1.1.409 | 0.002833 |
N | 39 | Q39Q | caA | caG | 1 | 1 | B.1.1.50 | 0.000679 |
N | 39 | Q39L | cAa | cTa | 1 | 1 | B.1.1.519 | 0.00004 |
N | 39 | Q39Q | caA | caG | 1 | 1 | B.1.1.54 | 0.003021 |
N | 39 | Q39R | cAa | cGa | 1 | 1 | B.1.1.7 | 0.000001 |
N | 39 | Q39Q | caA | caG | 1 | 1 | B.1.1.70 | 0.000341 |
N | 39 | Q39Q | caA | caG | 1 | 1 | B.1.142 | 0.002899 |
N | 39 | Q39R | cAa | cGa | 1 | 1 | B.1.160 | 0.000031 |
N | 39 | Q39Q | caA | caG | 1 | 1 | B.1.160 | 0.000031 |
N | 39 | Q39H | caA | caT | 1 | 1 | B.1.177.7 | 0.000165 |
N | 39 | Q39Q | caA | caG | 1 | 1 | B.1.177.7 | 0.000165 |
N | 39 | Q39del | CAA | --- | 1 | 1 | B.1.177.75 | 0.001041 |
N | 39 | Q39L | cAa | cTa | 1 | 1 | B.1.177.81 | 0.000189 |
N | 39 | Q39X | Caa | Taa | 1 | 1 | B.1.206 | 0.000816 |
N | 39 | Q39R | cAa | cGa | 1 | 1 | B.1.221 | 0.000071 |
N | 39 | Q39del | CAA | --- | 1 | 1 | B.1.221 | 0.000071 |
N | 39 | Q39X | Caa | Taa | 1 | 1 | B.1.258 | 0.000067 |
N | 39 | Q39R | cAa | cGa | 1 | 1 | B.1.265 | 0.001271 |
N | 39 | Q39X | Caa | Taa | 1 | 1 | B.1.313 | 0.006579 |
N | 39 | Q39L | cAa | cTa | 1 | 1 | B.1.336 | 0.002439 |
N | 39 | Q39L | cAa | cTa | 1 | 1 | B.1.351 | 0.00003 |
N | 39 | Q39L | cAa | cTa | 1 | 1 | B.1.351.2 | 0.000303 |
N | 39 | Q39R | cAa | cGa | 1 | 1 | B.1.356 | 0.001727 |
N | 39 | Q39X | Caa | Taa | 1 | 1 | B.1.36.29 | 0.000517 |
N | 39 | Q39L | cAa | cTa | 1 | 1 | B.1.36.8 | 0.001 |
N | 39 | Q39R | cAa | cGa | 1 | 1 | B.1.427 | 0.00005 |
N | 39 | Q39H | caA | caT | 1 | 1 | B.1.427 | 0.00005 |
N | 39 | Q39S | CAA | TCG | 1 | 1 | B.1.429 | 0.000024 |
N | 39 | Q39del | CAA | --- | 1 | 1 | B.1.439 | 0.005917 |
N | 39 | Q39Q | caA | caG | 1 | 1 | B.1.470 | 0.001404 |
N | 39 | Q39R | cAa | cGa | 1 | 1 | B.1.500 | 0.052632 |
N | 39 | Q39H | caA | caT | 1 | 1 | B.1.525 | 0.000113 |
N | 39 | Q39K | Caa | Aaa | 1 | 1 | B.1.526 | 0.000024 |
N | 39 | Q39X | Caa | Taa | 1 | 1 | B.1.564 | 0.000426 |
N | 39 | Q39R | cAa | cGa | 1 | 1 | B.1.580 | 0.004065 |
N | 39 | Q39L | cAa | cTa | 1 | 1 | B.1.595 | 0.000261 |
N | 39 | Q39K | Caa | Aaa | 1 | 1 | B.1.595 | 0.000261 |
N | 39 | Q39X | Caa | Taa | 1 | 1 | B.1.596 | 0.000087 |
N | 39 | Q39Q | caA | caG | 1 | 1 | B.1.596 | 0.000087 |
N | 39 | Q39X | Caa | Taa | 1 | 1 | B.1.617.2 | 0.000004 |
N | 39 | Q39E | Caa | Gaa | 1 | 1 | B.1.617.2 | 0.000004 |
N | 39 | Q39H | caA | caT | 1 | 1 | B.1.617.3 | 0.002985 |
N | 39 | Q39H | caA | caC | 1 | 1 | B.1.637 | 0.000073 |
N | 39 | Q39Q | caA | caG | 1 | 1 | B.1.93 | 0.000934 |
N | 39 | Q39R | cAa | cGa | 1 | 1 | B.40 | 0.000364 |
N | 39 | Q39X | Caa | Taa | 1 | 1 | C.35 | 0.000774 |
N | 39 | Q39del1 | cAa | c-a | 1 | 1 | D.2 | 0.000075 |
N | 39 | Q39R | cAa | cGa | 1 | 1 | P.1 | 0.000016 |
N | 39 | Q39H | caA | caC | 1 | 1 | P.1 | 0.000016 |
N | 39 | Q39Q | caA | caG | 1 | 1 | P.1.14 | 0.000048 |
N | 39 | Q39X | Caa | Taa | 1 | 1 | P.1.14 | 0.000048 |
N | 39 | Q39Q | caA | caG | 1 | 1 | P.1.17 | 0.000162 |
N | 39 | Q39Q | caA | caG | 1 | 1 | Q.1 | 0.000126 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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