CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 39

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N39Q39LnonsyncAacTa689689128388-28390
N39Q39QsyncaAcaG355355128388-28390
N39Q39KnonsynCaaAaa7474128388-28390
N39Q39HnonsyncaAcaC52380.73076928388-28390
N39Q39HnonsyncaAcaT52140.26923128388-28390
N39Q39EnonsynCaaGaa5151128388-28390
N39Q39RnonsyncAacGa4545128388-28390
N39Q39deldelCAA---4141128388-28390
N39Q39XnonsynCaaTaa31300.96774228388-28390
N39Q39XnonsynCAaTGa3110.032258128388-28390
N39Q39PnonsyncAacCa980.88888928388-28390
N39Q39PnonsyncAAcCC910.11111128388-28390
N39Q39del1delcAac-a22128388-28390
N39Q39TnonsynCAaACa210.528388-28390
N39Q39TnonsynCAAACC210.528388-28390
N39Q39NnonsynCaAAaC11128388-28390
N39Q39SnonsynCAATCG11128388-28390

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N39Q39LcAacTa689689All0.000132
N39Q39QcaAcaG355355All0.000068
N39Q39LcAacTa179179B.1.3371
N39Q39LcAacTa165165AY.9.20.00606
N39Q39LcAacTa103103B.1.1.70.000092
N39Q39QcaAcaG7676AY.40.000118
N39Q39KCaaAaa7474All0.000014
N39Q39KCaaAaa5858B.1.5750.017597
N39Q39HcaAcaC3852All0.000007
N39Q39HcaAcaT1452All0.000003
N39Q39ECaaGaa5151All0.00001
N39Q39RcAacGa4545All0.000009
N39Q39delCAA---4141All0.000008
N39Q39LcAacTa3636B.1.1.2970.080537
N39Q39QcaAcaG3636B.1.1.70.000032
N39Q39QcaAcaG3333AY.4.20.000716
N39Q39ECaaGaa3333AY.50.000681
N39Q39LcAacTa3232AY.98.10.00155
N39Q39XCaaTaa3031All0.000006
N39Q39XCAaTGa131All0
N39Q39QcaAcaG2020B.1.4270.00101
N39Q39LcAacTa1919AY.40.00003
N39Q39QcaAcaG1919AY.460.001978
N39Q39HcaAcaC1717P.1.120.008228
N39Q39QcaAcaG1616AY.440.000097
N39Q39LcAacTa1616B.1.4000.006864
N39Q39QcaAcaG1515AY.430.000066
N39Q39QcaAcaG1515B.10.000137
N39Q39QcaAcaG1515C.160.015907
N39Q39LcAacTa1212AY.30.000119
N39Q39LcAacTa1010B.1.20.000088
N39Q39LcAacTa1010B.1.2430.000696
N39Q39PcAacCa89All0.000002
N39Q39PcAAcCC19All0
N39Q39LcAacTa99AY.440.000055
N39Q39LcAacTa99B.10.000082
N39Q39delCAA---99B.1.1.70.000008
N39Q39QcaAcaG99P.10.000142
N39Q39QcaAcaG88AE.80.003912
N39Q39RcAacGa88AY.30.00008
N39Q39QcaAcaG88B.1.20.00007
N39Q39QcaAcaG77AY.1140.001618
N39Q39LcAacTa66B.1.1.2770.004552
N39Q39QcaAcaG66B.1.617.20.000023
N39Q39PcAacCa55AY.1030.000031
N39Q39LcAacTa55AY.250.00003
N39Q39QcaAcaG55AY.290.000079
N39Q39delCAA---55AY.40.000008
N39Q39QcaAcaG55AY.530.001438
N39Q39QcaAcaG55AZ.20.004105
N39Q39QcaAcaG55B.1.1.5190.000199
N39Q39KCaaAaa55B.1.20.000044
N39Q39QcaAcaG55B.1.2580.000333
N39Q39LcAacTa55B.1.617.20.000019
N39Q39XCaaTaa55D.20.000375
N39Q39QcaAcaG44AY.1030.000025
N39Q39LcAacTa44AY.1190.000141
N39Q39LcAacTa44AY.120.001264
N39Q39delCAA---44AY.50.000083
N39Q39LcAacTa44B.1.1.2140.000222
N39Q39XCaaTaa44B.1.1.70.000004
N39Q39QcaAcaG44B.1.1770.000053
N39Q39RcAacGa44B.1.1770.000053
N39Q39HcaAcaC44B.1.20.000035
N39Q39RcAacGa44B.1.2580.000266
N39Q39LcAacTa44B.1.617.10.000516
N39Q39LcAacTa44C.350.003096
N39Q39LcAacTa44P.10.000063
N39Q39LcAacTa33AY.1030.000019
N39Q39QcaAcaG33AY.1110.000549
N39Q39LcAacTa33AY.200.000117
N39Q39RcAacGa33AY.260.000085
N39Q39ECaaGaa33AY.40.000005
N39Q39HcaAcaC33AY.430.000013
N39Q39delCAA---33AY.430.000013
N39Q39XCaaTaa33B.10.000027
N39Q39KCaaAaa33B.10.000027
N39Q39HcaAcaC33B.1.10.000054
N39Q39LcAacTa33B.1.1.100.003344
N39Q39LcAacTa33B.1.1.250.001706
N39Q39LcAacTa33B.1.1.3110.001074
N39Q39QcaAcaG33B.1.1.630.001157
N39Q39ECaaGaa33B.1.1.70.000003
N39Q39XCaaTaa33B.1.20.000026
N39Q39RcAacGa33B.1.20.000026
N39Q39HcaAcaC33B.1.617.20.000011
N39Q39delCAA---33B.1.617.20.000011
N39Q39ECaaGaa33P.30.004785
N39Q39PcAacCa120.055556
N39Q39TCAAACC120.055556
N39Q39TCAaACa120.055556
N39Q39PcAAcCC120.055556
N39Q39del1cAac-a22All0
N39Q39TCAaACa12All0
N39Q39TCAAACC12All0
N39Q39LcAacTa22AY.1020.000053
N39Q39HcaAcaT22AY.1160.000574
N39Q39LcAacTa22AY.230.000139
N39Q39delCAA---22AY.230.000139
N39Q39QcaAcaG22AY.250.000012
N39Q39HcaAcaT22AY.30.00002
N39Q39QcaAcaG22AY.350.000466
N39Q39HcaAcaC22AY.390.000049
N39Q39QcaAcaG22AY.390.000049
N39Q39delCAA---22AY.460.000208
N39Q39LcAacTa22AY.50.000041
N39Q39LcAacTa22AY.610.00021
N39Q39ECaaGaa22AY.850.000854
N39Q39RcAacGa22AZ.30.00304
N39Q39XCaaTaa22B.1.10.000036
N39Q39QcaAcaG22B.1.1.280.000622
N39Q39LcAacTa22B.1.1.3060.000877
N39Q39HcaAcaC22B.1.1.3980.006452
N39Q39HcaAcaC12B.1.1.70.000001
N39Q39HcaAcaT12B.1.1.70.000001
N39Q39LcAacTa22B.1.1.700.000682
N39Q39QcaAcaG22B.1.360.000292
N39Q39RcAacGa22B.1.36.10.002281
N39Q39LcAacTa22B.1.4280.002041
N39Q39LcAacTa22B.1.5960.000174
N39Q39QcaAcaG22C.370.000232
N39Q39HcaAcaC110.055556
N39Q39KCaaAaa110.055556
N39Q39RcAacGa110.055556
N39Q39NCaAAaC110.055556
N39Q39RcAacGa11A.23.10.000704
N39Q39SCAATCG11All0
N39Q39NCaAAaC11All0
N39Q39QcaAcaG11AY.1020.000027
N39Q39RcAacGa11AY.1030.000006
N39Q39XCaaTaa11AY.1100.000113
N39Q39ECaaGaa11AY.1170.000085
N39Q39QcaAcaG11AY.1190.000035
N39Q39KCaaAaa11AY.1200.000037
N39Q39LcAacTa11AY.1200.000037
N39Q39ECaaGaa11AY.220.002092
N39Q39KCaaAaa11AY.250.000006
N39Q39RcAacGa11AY.250.000006
N39Q39LcAacTa11AY.260.000028
N39Q39HcaAcaT11AY.260.000028
N39Q39ECaaGaa11AY.290.000016
N39Q39HcaAcaT11AY.290.000016
N39Q39KCaaAaa11AY.390.000025
N39Q39ECaaGaa11AY.39.10.00004
N39Q39QcaAcaG11AY.39.10.00004
N39Q39PcAacCa11AY.40.000002
N39Q39KCaaAaa11AY.40.000002
N39Q39LcAacTa11AY.4.20.000022
N39Q39RcAacGa11AY.4.20.000022
N39Q39delCAA---11AY.4.40.000409
N39Q39PcAacCa11AY.430.000004
N39Q39LcAacTa11AY.430.000004
N39Q39delCAA---11AY.440.000006
N39Q39XCAaTGa11AY.440.000006
N39Q39LcAacTa11AY.450.000122
N39Q39delCAA---11AY.46.60.000072
N39Q39QcaAcaG11AY.470.000031
N39Q39HcaAcaT11AY.470.000031
N39Q39QcaAcaG11AY.5.30.000337
N39Q39delCAA---11AY.5.30.000337
N39Q39LcAacTa11AY.540.000095
N39Q39HcaAcaT11AY.590.00053
N39Q39RcAacGa11AY.60.000041
N39Q39delCAA---11AY.600.000938
N39Q39LcAacTa11AY.75.10.00018
N39Q39XCaaTaa11AY.75.10.00018
N39Q39QcaAcaG11AY.9.10.000084
N39Q39delCAA---11AY.9.10.000084
N39Q39KCaaAaa11AY.980.000079
N39Q39delCAA---11AY.990.001049
N39Q39QcaAcaG11AY.99.20.000092
N39Q39RcAacGa11B0.000128
N39Q39ECaaGaa11B.10.000009
N39Q39RcAacGa11B.10.000009
N39Q39del1cAac-a11B.10.000009
N39Q39delCAA---11B.1.10.000018
N39Q39QcaAcaG11B.1.10.000018
N39Q39RcAacGa11B.1.10.000018
N39Q39delCAA---11B.1.1.1390.022727
N39Q39delCAA---11B.1.1.2160.00089
N39Q39LcAacTa11B.1.1.2220.000204
N39Q39XCaaTaa11B.1.1.2270.004348
N39Q39LcAacTa11B.1.1.2630.001558
N39Q39XCaaTaa11B.1.1.2670.010101
N39Q39QcaAcaG11B.1.1.2860.002899
N39Q39HcaAcaT11B.1.1.3030.002762
N39Q39LcAacTa11B.1.1.3170.000412
N39Q39ECaaGaa11B.1.1.3170.000412
N39Q39LcAacTa11B.1.1.4090.002833
N39Q39QcaAcaG11B.1.1.500.000679
N39Q39LcAacTa11B.1.1.5190.00004
N39Q39QcaAcaG11B.1.1.540.003021
N39Q39RcAacGa11B.1.1.70.000001
N39Q39QcaAcaG11B.1.1.700.000341
N39Q39QcaAcaG11B.1.1420.002899
N39Q39RcAacGa11B.1.1600.000031
N39Q39QcaAcaG11B.1.1600.000031
N39Q39HcaAcaT11B.1.177.70.000165
N39Q39QcaAcaG11B.1.177.70.000165
N39Q39delCAA---11B.1.177.750.001041
N39Q39LcAacTa11B.1.177.810.000189
N39Q39XCaaTaa11B.1.2060.000816
N39Q39RcAacGa11B.1.2210.000071
N39Q39delCAA---11B.1.2210.000071
N39Q39XCaaTaa11B.1.2580.000067
N39Q39RcAacGa11B.1.2650.001271
N39Q39XCaaTaa11B.1.3130.006579
N39Q39LcAacTa11B.1.3360.002439
N39Q39LcAacTa11B.1.3510.00003
N39Q39LcAacTa11B.1.351.20.000303
N39Q39RcAacGa11B.1.3560.001727
N39Q39XCaaTaa11B.1.36.290.000517
N39Q39LcAacTa11B.1.36.80.001
N39Q39RcAacGa11B.1.4270.00005
N39Q39HcaAcaT11B.1.4270.00005
N39Q39SCAATCG11B.1.4290.000024
N39Q39delCAA---11B.1.4390.005917
N39Q39QcaAcaG11B.1.4700.001404
N39Q39RcAacGa11B.1.5000.052632
N39Q39HcaAcaT11B.1.5250.000113
N39Q39KCaaAaa11B.1.5260.000024
N39Q39XCaaTaa11B.1.5640.000426
N39Q39RcAacGa11B.1.5800.004065
N39Q39LcAacTa11B.1.5950.000261
N39Q39KCaaAaa11B.1.5950.000261
N39Q39XCaaTaa11B.1.5960.000087
N39Q39QcaAcaG11B.1.5960.000087
N39Q39XCaaTaa11B.1.617.20.000004
N39Q39ECaaGaa11B.1.617.20.000004
N39Q39HcaAcaT11B.1.617.30.002985
N39Q39HcaAcaC11B.1.6370.000073
N39Q39QcaAcaG11B.1.930.000934
N39Q39RcAacGa11B.400.000364
N39Q39XCaaTaa11C.350.000774
N39Q39del1cAac-a11D.20.000075
N39Q39RcAacGa11P.10.000016
N39Q39HcaAcaC11P.10.000016
N39Q39QcaAcaG11P.1.140.000048
N39Q39XCaaTaa11P.1.140.000048
N39Q39QcaAcaG11P.1.170.000162
N39Q39QcaAcaG11Q.10.000126