CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 389 | Q389H | nonsyn | caG | caT | 7760 | 7569 | 0.975387 | 29438-29440 | |
N | 389 | Q389H | nonsyn | caG | caC | 7760 | 191 | 0.0246134 | 29438-29440 | |
N | 389 | Q389L | nonsyn | cAg | cTg | 5417 | 5409 | 0.998523 | 29438-29440 | |
N | 389 | Q389L | nonsyn | CAg | TTg | 5417 | 2 | 0.000369208 | 29438-29440 | |
N | 389 | Q389L | nonsyn | cAG | cTT | 5417 | 2 | 0.000369208 | 29438-29440 | |
N | 389 | Q389L | nonsyn | cAG | cTC | 5417 | 2 | 0.000369208 | 29438-29440 | |
N | 389 | Q389L | nonsyn | CAG | TTA | 5417 | 2 | 0.000369208 | 29438-29440 | |
N | 389 | Q389Q | syn | caG | caA | 3952 | 3952 | 1 | 29438-29440 | |
N | 389 | Q389del | del | CAG | --- | 115 | 115 | 1 | 29438-29440 | |
N | 389 | Q389R | nonsyn | cAg | cGg | 36 | 36 | 1 | 29438-29440 | |
N | 389 | Q389K | nonsyn | Cag | Aag | 27 | 21 | 0.777778 | 29438-29440 | |
N | 389 | Q389K | nonsyn | CaG | AaA | 27 | 6 | 0.222222 | 29438-29440 | |
N | 389 | Q389E | nonsyn | Cag | Gag | 23 | 14 | 0.608696 | 29438-29440 | |
N | 389 | Q389E | nonsyn | CaG | GaA | 23 | 9 | 0.391304 | 29438-29440 | |
N | 389 | Q389X | nonsyn | Cag | Tag | 14 | 12 | 0.857143 | 29438-29440 | |
N | 389 | Q389X | nonsyn | CaG | TaA | 14 | 2 | 0.142857 | 29438-29440 | |
N | 389 | Q389P | nonsyn | cAg | cCg | 12 | 12 | 1 | 29438-29440 | |
N | 389 | Q389del1 | del | caG | ca- | 10 | 5 | 0.5 | 29438-29440 | |
N | 389 | Q389del1 | del | Cag | -ag | 10 | 5 | 0.5 | 29438-29440 | |
N | 389 | Q389Y | nonsyn | CaG | TaT | 5 | 3 | 0.6 | 29438-29440 | |
N | 389 | Q389Y | nonsyn | CaG | TaC | 5 | 2 | 0.4 | 29438-29440 | |
N | 389 | Q389N | nonsyn | CaG | AaC | 4 | 2 | 0.5 | 29438-29440 | |
N | 389 | Q389N | nonsyn | CaG | AaT | 4 | 2 | 0.5 | 29438-29440 | |
N | 389 | Q389T | nonsyn | CAg | ACg | 1 | 1 | 1 | 29438-29440 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 389 | Q389H | caG | caT | 7569 | 7760 | All | 0.001448 |
N | 389 | Q389H | caG | caC | 191 | 7760 | All | 0.000037 |
N | 389 | Q389L | cAg | cTg | 5409 | 5417 | All | 0.001035 |
N | 389 | Q389L | CAG | TTA | 2 | 5417 | All | 0 |
N | 389 | Q389L | cAG | cTC | 2 | 5417 | All | 0 |
N | 389 | Q389L | cAG | cTT | 2 | 5417 | All | 0 |
N | 389 | Q389L | CAg | TTg | 2 | 5417 | All | 0 |
N | 389 | Q389L | cAg | cTg | 5178 | 5179 | B.1.2 | 0.045594 |
N | 389 | Q389L | CAg | TTg | 1 | 5179 | B.1.2 | 0.000009 |
N | 389 | Q389Q | caG | caA | 3952 | 3952 | All | 0.000756 |
N | 389 | Q389H | caG | caT | 3160 | 3216 | B.1.1.7 | 0.002829 |
N | 389 | Q389H | caG | caC | 56 | 3216 | B.1.1.7 | 0.00005 |
N | 389 | Q389Q | caG | caA | 1726 | 1726 | AY.62 | 0.75207 |
N | 389 | Q389H | caG | caT | 1171 | 1182 | AY.4 | 0.001823 |
N | 389 | Q389H | caG | caC | 11 | 1182 | AY.4 | 0.000017 |
N | 389 | Q389Q | caG | caA | 983 | 983 | B.1.1.7 | 0.00088 |
N | 389 | Q389Q | caG | caA | 517 | 517 | B.1.617.2 | 0.001947 |
N | 389 | Q389H | caG | caT | 471 | 471 | Q.3 | 0.06831 |
N | 389 | Q389H | caG | caT | 336 | 392 | B.1.617.2 | 0.001265 |
N | 389 | Q389H | caG | caC | 56 | 392 | B.1.617.2 | 0.000211 |
N | 389 | Q389H | caG | caT | 284 | 284 | B.1.623 | 0.152361 |
N | 389 | Q389H | caG | caT | 157 | 164 | AY.43 | 0.000696 |
N | 389 | Q389H | caG | caC | 7 | 164 | AY.43 | 0.000031 |
N | 389 | Q389H | caG | caT | 103 | 118 | B.1.2 | 0.000907 |
N | 389 | Q389H | caG | caC | 15 | 118 | B.1.2 | 0.000132 |
N | 389 | Q389del | CAG | --- | 115 | 115 | All | 0.000022 |
N | 389 | Q389Q | caG | caA | 109 | 109 | AY.43 | 0.000483 |
N | 389 | Q389Q | caG | caA | 106 | 106 | AY.103 | 0.000658 |
N | 389 | Q389Q | caG | caA | 104 | 104 | AY.39 | 0.00257 |
N | 389 | Q389H | caG | caT | 95 | 101 | B.1.258 | 0.006322 |
N | 389 | Q389H | caG | caC | 6 | 101 | B.1.258 | 0.000399 |
N | 389 | Q389H | caG | caT | 100 | 100 | AY.103 | 0.000621 |
N | 389 | Q389H | caG | caT | 97 | 97 | B.1.369 | 0.027667 |
N | 389 | Q389Q | caG | caA | 68 | 68 | AY.4.2 | 0.001475 |
N | 389 | Q389H | caG | caT | 63 | 63 | B.1.427 | 0.003181 |
N | 389 | Q389H | caG | caT | 59 | 61 | B.1.466.2 | 0.023083 |
N | 389 | Q389H | caG | caC | 2 | 61 | B.1.466.2 | 0.000782 |
N | 389 | Q389H | caG | caT | 59 | 60 | B.1 | 0.00054 |
N | 389 | Q389H | caG | caC | 1 | 60 | B.1 | 0.000009 |
N | 389 | Q389H | caG | caT | 56 | 56 | AY.35 | 0.013051 |
N | 389 | Q389H | caG | caT | 56 | 56 | B.1.177 | 0.000737 |
N | 389 | Q389H | caG | caT | 55 | 55 | B.1.243 | 0.003827 |
N | 389 | Q389H | caG | caT | 51 | 51 | AY.3 | 0.000507 |
N | 389 | Q389H | caG | caT | 46 | 46 | AY.71 | 0.021853 |
N | 389 | Q389H | caG | caT | 46 | 46 | B.1.575 | 0.013956 |
N | 389 | Q389H | caG | caT | 45 | 45 | B.1.526 | 0.001058 |
N | 389 | Q389H | caG | caT | 44 | 44 | P.1 | 0.000693 |
N | 389 | Q389Q | caG | caA | 41 | 41 | AY.4 | 0.000064 |
N | 389 | Q389H | caG | caT | 38 | 40 | AY.44 | 0.000231 |
N | 389 | Q389H | caG | caC | 2 | 40 | AY.44 | 0.000012 |
N | 389 | Q389R | cAg | cGg | 36 | 36 | All | 0.000007 |
N | 389 | Q389H | caG | caT | 35 | 35 | B.1.1.63 | 0.013503 |
N | 389 | Q389H | caG | caT | 34 | 34 | B.1.396 | 0.023994 |
N | 389 | Q389H | caG | caT | 32 | 32 | B.1.1 | 0.000581 |
N | 389 | Q389L | cAg | cTg | 31 | 32 | B.1.596 | 0.002701 |
N | 389 | Q389L | CAg | TTg | 1 | 32 | B.1.596 | 0.000087 |
N | 389 | Q389Q | caG | caA | 31 | 31 | AY.3 | 0.000308 |
N | 389 | Q389H | caG | caT | 30 | 31 | AY.46 | 0.003122 |
N | 389 | Q389H | caG | caC | 1 | 31 | AY.46 | 0.000104 |
N | 389 | Q389L | cAg | cTg | 31 | 31 | B.1.617.2 | 0.000117 |
N | 389 | Q389H | caG | caT | 30 | 30 | AY.118 | 0.001879 |
N | 389 | Q389L | cAg | cTg | 30 | 30 | AY.61 | 0.003143 |
N | 389 | Q389H | caG | caT | 29 | 29 | B.1.240 | 0.006251 |
N | 389 | Q389H | caG | caT | 28 | 28 | B.1.1.519 | 0.001112 |
N | 389 | Q389K | Cag | Aag | 21 | 27 | All | 0.000004 |
N | 389 | Q389K | CaG | AaA | 6 | 27 | All | 0.000001 |
N | 389 | Q389L | cAg | cTg | 25 | 27 | B.1 | 0.000229 |
N | 389 | Q389L | cAG | cTT | 1 | 27 | B.1 | 0.000009 |
N | 389 | Q389L | cAG | cTC | 1 | 27 | B.1 | 0.000009 |
N | 389 | Q389Q | caG | caA | 26 | 26 | AY.92 | 0.007469 |
N | 389 | Q389H | caG | caT | 26 | 26 | B.1.351 | 0.000773 |
N | 389 | Q389H | caG | caT | 25 | 25 | B.1.429 | 0.000588 |
N | 389 | Q389Q | caG | caA | 24 | 24 | AY.102 | 0.000636 |
N | 389 | Q389H | caG | caT | 24 | 24 | B.1.160 | 0.000749 |
N | 389 | Q389E | Cag | Gag | 14 | 23 | All | 0.000003 |
N | 389 | Q389E | CaG | GaA | 9 | 23 | All | 0.000002 |
N | 389 | Q389del | CAG | --- | 21 | 21 | B.1.617.2 | 0.000079 |
N | 389 | Q389H | caG | caT | 19 | 19 | AY.68 | 0.005201 |
N | 389 | Q389L | cAg | cTg | 19 | 19 | B.1.1.7 | 0.000017 |
N | 389 | Q389H | caG | caT | 18 | 18 | AY.47 | 0.00056 |
N | 389 | Q389H | caG | caT | 17 | 17 | AY.100 | 0.000782 |
N | 389 | Q389H | caG | caT | 17 | 17 | AY.29 | 0.000268 |
N | 389 | Q389Q | caG | caA | 17 | 17 | AY.44 | 0.000103 |
N | 389 | Q389H | caG | caT | 16 | 16 | AY.102 | 0.000424 |
N | 389 | Q389H | caG | caT | 16 | 16 | AY.121 | 0.002165 |
N | 389 | Q389H | caG | caT | 15 | 16 | AY.25 | 0.00009 |
N | 389 | Q389H | caG | caC | 1 | 16 | AY.25 | 0.000006 |
N | 389 | Q389Q | caG | caA | 16 | 16 | B.1 | 0.000147 |
N | 389 | Q389H | caG | caT | 16 | 16 | B.1.234 | 0.002111 |
N | 389 | Q389H | caG | caT | 16 | 16 | B.1.561 | 0.006352 |
N | 389 | Q389X | Cag | Tag | 12 | 14 | All | 0.000002 |
N | 389 | Q389X | CaG | TaA | 2 | 14 | All | 0 |
N | 389 | Q389Q | caG | caA | 14 | 14 | B.1.2 | 0.000123 |
N | 389 | Q389H | caG | caT | 13 | 13 | AY.61 | 0.001362 |
N | 389 | Q389R | cAg | cGg | 13 | 13 | B.1.1.7 | 0.000012 |
N | 389 | Q389H | caG | caT | 13 | 13 | B.1.324 | 0.020867 |
N | 389 | Q389P | cAg | cCg | 12 | 12 | All | 0.000002 |
N | 389 | Q389H | caG | caT | 12 | 12 | AY.3.1 | 0.001023 |
N | 389 | Q389H | caG | caT | 12 | 12 | B.1.1.456 | 0.666667 |
N | 389 | Q389H | caG | caT | 12 | 12 | C.36 | 0.010929 |
N | 389 | Q389H | caG | caT | 11 | 11 | AY.9.1 | 0.000921 |
N | 389 | Q389E | CaG | GaA | 9 | 11 | B.1.1.7 | 0.000008 |
N | 389 | Q389E | Cag | Gag | 2 | 11 | B.1.1.7 | 0.000002 |
N | 389 | Q389H | caG | caT | 11 | 11 | P.1.14 | 0.000526 |
N | 389 | Q389del1 | caG | ca- | 5 | 10 | All | 0.000001 |
N | 389 | Q389del1 | Cag | -ag | 5 | 10 | All | 0.000001 |
N | 389 | Q389H | caG | caT | 10 | 10 | AY.23 | 0.000697 |
N | 389 | Q389L | cAg | cTg | 10 | 10 | AY.4 | 0.000016 |
N | 389 | Q389del | CAG | --- | 10 | 10 | AY.43 | 0.000044 |
N | 389 | Q389H | caG | caT | 10 | 10 | P.2 | 0.001866 |
N | 389 | Q389Q | caG | caA | 10 | 10 | Q.1 | 0.001263 |
N | 389 | Q389H | caG | caT | 9 | 9 | A.21 | 0.024931 |
N | 389 | Q389H | caG | caT | 9 | 9 | AY.117 | 0.000761 |
N | 389 | Q389Q | caG | caA | 9 | 9 | AY.117 | 0.000761 |
N | 389 | Q389H | caG | caT | 9 | 9 | AY.36 | 0.001334 |
N | 389 | Q389H | caG | caT | 9 | 9 | AY.42 | 0.000362 |
N | 389 | Q389Q | caG | caA | 9 | 9 | B.1.1 | 0.000163 |
N | 389 | Q389L | cAg | cTg | 9 | 9 | B.1.1.519 | 0.000357 |
N | 389 | Q389Q | caG | caA | 9 | 9 | B.1.526 | 0.000212 |
N | 389 | Q389L | cAg | cTg | 9 | 9 | C.37 | 0.001045 |
N | 389 | Q389Q | caG | caA | 8 | 8 | AY.120 | 0.000297 |
N | 389 | Q389H | caG | caT | 8 | 8 | AY.20 | 0.000311 |
N | 389 | Q389H | caG | caT | 7 | 8 | AY.39 | 0.000173 |
N | 389 | Q389H | caG | caC | 1 | 8 | AY.39 | 0.000025 |
N | 389 | Q389del | CAG | --- | 8 | 8 | AY.4 | 0.000012 |
N | 389 | Q389H | caG | caC | 6 | 8 | AY.4.5 | 0.000645 |
N | 389 | Q389H | caG | caT | 2 | 8 | AY.4.5 | 0.000215 |
N | 389 | Q389H | caG | caT | 8 | 8 | B.1.1.33 | 0.003367 |
N | 389 | Q389H | caG | caT | 5 | 8 | B.1.497 | 0.001574 |
N | 389 | Q389H | caG | caC | 3 | 8 | B.1.497 | 0.000944 |
N | 389 | Q389H | caG | caT | 8 | 8 | B.1.525 | 0.000905 |
N | 389 | Q389H | caG | caT | 7 | 7 | AY.13 | 0.001127 |
N | 389 | Q389del | CAG | --- | 7 | 7 | AY.25 | 0.000042 |
N | 389 | Q389L | cAg | cTg | 6 | 7 | AY.25 | 0.000036 |
N | 389 | Q389L | CAG | TTA | 1 | 7 | AY.25 | 0.000006 |
N | 389 | Q389H | caG | caT | 7 | 7 | AY.4.2 | 0.000152 |
N | 389 | Q389H | caG | caT | 7 | 7 | AY.45 | 0.000852 |
N | 389 | Q389del | CAG | --- | 7 | 7 | B.1.1.7 | 0.000006 |
N | 389 | Q389Q | caG | caA | 7 | 7 | B.1.177 | 0.000092 |
N | 389 | Q389H | caG | caT | 7 | 7 | B.1.177.4 | 0.001477 |
N | 389 | Q389Q | caG | caA | 7 | 7 | B.1.429 | 0.000165 |
N | 389 | Q389Q | caG | caA | 7 | 7 | Q.3 | 0.001015 |
N | 389 | Q389H | caG | caT | 6 | 6 | AY.33 | 0.000401 |
N | 389 | Q389H | caG | caT | 6 | 6 | AY.75 | 0.000336 |
N | 389 | Q389H | caG | caT | 6 | 6 | AY.75.1 | 0.001082 |
N | 389 | Q389H | caG | caT | 4 | 6 | AY.9 | 0.00027 |
N | 389 | Q389H | caG | caC | 2 | 6 | AY.9 | 0.000135 |
N | 389 | Q389L | cAg | cTg | 6 | 6 | AY.91.1 | 0.02439 |
N | 389 | Q389H | caG | caT | 6 | 6 | AY.98 | 0.000474 |
N | 389 | Q389H | caG | caT | 5 | 6 | AY.98.1 | 0.000242 |
N | 389 | Q389H | caG | caC | 1 | 6 | AY.98.1 | 0.000048 |
N | 389 | Q389del | CAG | --- | 6 | 6 | B.1 | 0.000055 |
N | 389 | Q389H | caG | caT | 6 | 6 | B.1.1.284 | 0.000644 |
N | 389 | Q389H | caG | caT | 6 | 6 | B.1.1.39 | 0.003058 |
N | 389 | Q389K | Cag | Aag | 6 | 6 | B.1.1.7 | 0.000005 |
N | 389 | Q389H | caG | caT | 6 | 6 | B.1.177.40 | 0.030928 |
N | 389 | Q389H | caG | caT | 6 | 6 | B.1.621.1 | 0.003035 |
N | 389 | Q389K | Cag | Aag | 3 | 5 | 0.166667 | |
N | 389 | Q389K | CaG | AaA | 2 | 5 | 0.111111 | |
N | 389 | Q389Y | CaG | TaT | 3 | 5 | All | 0.000001 |
N | 389 | Q389Y | CaG | TaC | 2 | 5 | All | 0 |
N | 389 | Q389Q | caG | caA | 5 | 5 | AY.20 | 0.000194 |
N | 389 | Q389Q | caG | caA | 5 | 5 | AY.25 | 0.00003 |
N | 389 | Q389P | cAg | cCg | 5 | 5 | AY.3 | 0.00005 |
N | 389 | Q389H | caG | caT | 5 | 5 | AY.5 | 0.000103 |
N | 389 | Q389H | caG | caT | 3 | 5 | AY.9.2 | 0.00011 |
N | 389 | Q389H | caG | caC | 2 | 5 | AY.9.2 | 0.000073 |
N | 389 | Q389Q | caG | caA | 5 | 5 | B.1.177.4 | 0.001055 |
N | 389 | Q389H | caG | caT | 5 | 5 | B.1.177.43 | 0.007386 |
N | 389 | Q389H | caG | caT | 5 | 5 | B.1.177.82 | 0.002387 |
N | 389 | Q389K | Cag | Aag | 5 | 5 | B.1.2 | 0.000044 |
N | 389 | Q389del | CAG | --- | 5 | 5 | C.37 | 0.00058 |
N | 389 | Q389Q | caG | caA | 5 | 5 | C.37 | 0.00058 |
N | 389 | Q389H | caG | caT | 5 | 5 | P.1.10 | 0.001347 |
N | 389 | Q389H | caG | caT | 5 | 5 | Q.8 | 0.000825 |
N | 389 | Q389H | caG | caT | 2 | 4 | 0.111111 | |
N | 389 | Q389N | CaG | AaC | 2 | 4 | 0.111111 | |
N | 389 | Q389N | CaG | AaT | 2 | 4 | 0.111111 | |
N | 389 | Q389Y | CaG | TaC | 2 | 4 | 0.111111 | |
N | 389 | Q389Y | CaG | TaT | 2 | 4 | 0.111111 | |
N | 389 | Q389H | caG | caC | 2 | 4 | 0.111111 | |
N | 389 | Q389N | CaG | AaT | 2 | 4 | All | 0 |
N | 389 | Q389N | CaG | AaC | 2 | 4 | All | 0 |
N | 389 | Q389H | caG | caT | 4 | 4 | AY.120.2 | 0.005141 |
N | 389 | Q389H | caG | caT | 3 | 4 | AY.26 | 0.000085 |
N | 389 | Q389H | caG | caC | 1 | 4 | AY.26 | 0.000028 |
N | 389 | Q389H | caG | caT | 4 | 4 | AY.39.1 | 0.000158 |
N | 389 | Q389E | Cag | Gag | 4 | 4 | AY.4 | 0.000006 |
N | 389 | Q389L | cAg | cTg | 3 | 4 | AY.43 | 0.000013 |
N | 389 | Q389L | cAG | cTC | 1 | 4 | AY.43 | 0.000004 |
N | 389 | Q389H | caG | caT | 3 | 4 | AY.6 | 0.000123 |
N | 389 | Q389H | caG | caC | 1 | 4 | AY.6 | 0.000041 |
N | 389 | Q389H | caG | caT | 4 | 4 | AY.67 | 0.001857 |
N | 389 | Q389H | caG | caT | 4 | 4 | AY.72 | 0.005442 |
N | 389 | Q389H | caG | caT | 4 | 4 | AY.99 | 0.004197 |
N | 389 | Q389del | CAG | --- | 4 | 4 | B.1.1 | 0.000073 |
N | 389 | Q389H | caG | caT | 4 | 4 | B.1.1.311 | 0.001433 |
N | 389 | Q389H | caG | caT | 4 | 4 | B.1.1.349 | 0.041237 |
N | 389 | Q389H | caG | caT | 4 | 4 | B.1.1.462 | 0.034483 |
N | 389 | Q389del | CAG | --- | 4 | 4 | B.1.177 | 0.000053 |
N | 389 | Q389H | caG | caT | 4 | 4 | B.1.221 | 0.000284 |
N | 389 | Q389H | caG | caT | 4 | 4 | B.1.409 | 0.003125 |
N | 389 | Q389H | caG | caT | 4 | 4 | B.1.617.1 | 0.000516 |
N | 389 | Q389H | caG | caT | 4 | 4 | B.1.621 | 0.000354 |
N | 389 | Q389H | caG | caT | 4 | 4 | B.1.630 | 0.020942 |
N | 389 | Q389Q | caG | caA | 4 | 4 | B.40 | 0.001457 |
N | 389 | Q389P | cAg | cCg | 4 | 4 | P.1 | 0.000063 |
N | 389 | Q389H | caG | caT | 3 | 3 | AY.106 | 0.001005 |
N | 389 | Q389H | caG | caT | 3 | 3 | AY.108 | 0.003308 |
N | 389 | Q389H | caG | caT | 3 | 3 | AY.120 | 0.000112 |
N | 389 | Q389L | cAg | cTg | 3 | 3 | AY.13 | 0.000483 |
N | 389 | Q389H | caG | caT | 3 | 3 | AY.16.1 | 0.00141 |
N | 389 | Q389L | cAg | cTg | 3 | 3 | AY.20 | 0.000117 |
N | 389 | Q389L | cAg | cTg | 2 | 3 | AY.44 | 0.000012 |
N | 389 | Q389L | CAG | TTA | 1 | 3 | AY.44 | 0.000006 |
N | 389 | Q389Q | caG | caA | 3 | 3 | AY.45 | 0.000365 |
N | 389 | Q389H | caG | caT | 2 | 3 | AY.54 | 0.000191 |
N | 389 | Q389H | caG | caC | 1 | 3 | AY.54 | 0.000095 |
N | 389 | Q389H | caG | caT | 3 | 3 | AY.64 | 0.001786 |
N | 389 | Q389H | caG | caT | 3 | 3 | AY.74 | 0.000347 |
N | 389 | Q389L | cAg | cTg | 3 | 3 | AY.75.1 | 0.000541 |
N | 389 | Q389Q | caG | caA | 3 | 3 | AY.90 | 0.002053 |
N | 389 | Q389H | caG | caT | 3 | 3 | B.1.1.216 | 0.002671 |
N | 389 | Q389H | caG | caT | 3 | 3 | B.1.1.25 | 0.001706 |
N | 389 | Q389H | caG | caT | 3 | 3 | B.1.1.27 | 0.016949 |
N | 389 | Q389H | caG | caC | 3 | 3 | B.1.1.317 | 0.001235 |
N | 389 | Q389H | caG | caT | 3 | 3 | B.1.1.50 | 0.002037 |
N | 389 | Q389R | cAg | cGg | 3 | 3 | B.1.160 | 0.000094 |
N | 389 | Q389del | CAG | --- | 3 | 3 | B.1.2 | 0.000026 |
N | 389 | Q389H | caG | caT | 3 | 3 | B.1.229 | 0.029126 |
N | 389 | Q389H | caG | caT | 3 | 3 | B.1.36 | 0.000438 |
N | 389 | Q389H | caG | caT | 3 | 3 | B.1.36.29 | 0.001552 |
N | 389 | Q389Q | caG | caA | 3 | 3 | B.1.427 | 0.000151 |
N | 389 | Q389H | caG | caT | 3 | 3 | B.1.507 | 0.033708 |
N | 389 | Q389Q | caG | caA | 3 | 3 | B.1.596 | 0.000261 |
N | 389 | Q389H | caG | caT | 2 | 3 | B.1.596 | 0.000174 |
N | 389 | Q389H | caG | caC | 1 | 3 | B.1.596 | 0.000087 |
N | 389 | Q389Q | caG | caA | 3 | 3 | B.1.617.1 | 0.000387 |
N | 389 | Q389H | caG | caT | 3 | 3 | B.1.637 | 0.000219 |
N | 389 | Q389del | CAG | --- | 3 | 3 | P.1 | 0.000047 |
N | 389 | Q389H | caG | caT | 3 | 3 | P.1.7 | 0.000958 |
N | 389 | Q389del1 | Cag | -ag | 2 | 2 | 0.111111 | |
N | 389 | Q389Q | caG | caA | 2 | 2 | 0.111111 | |
N | 389 | Q389del | CAG | --- | 2 | 2 | 0.111111 | |
N | 389 | Q389X | CaG | TaA | 2 | 2 | 0.111111 | |
N | 389 | Q389H | caG | caT | 2 | 2 | A.2.5 | 0.000998 |
N | 389 | Q389H | caG | caT | 2 | 2 | A.2.5.2 | 0.003145 |
N | 389 | Q389Q | caG | caA | 2 | 2 | AY.100 | 0.000092 |
N | 389 | Q389H | caG | caT | 2 | 2 | AY.109 | 0.001479 |
N | 389 | Q389H | caG | caT | 2 | 2 | AY.16 | 0.000759 |
N | 389 | Q389del | CAG | --- | 2 | 2 | AY.23 | 0.000139 |
N | 389 | Q389R | cAg | cGg | 2 | 2 | AY.23 | 0.000139 |
N | 389 | Q389E | Cag | Gag | 2 | 2 | AY.3 | 0.00002 |
N | 389 | Q389H | caG | caT | 2 | 2 | AY.32 | 0.001065 |
N | 389 | Q389H | caG | caT | 2 | 2 | AY.34 | 0.000194 |
N | 389 | Q389Q | caG | caA | 2 | 2 | AY.37 | 0.000632 |
N | 389 | Q389L | cAg | cTg | 2 | 2 | AY.39 | 0.000049 |
N | 389 | Q389Q | caG | caA | 2 | 2 | AY.39.1 | 0.000079 |
N | 389 | Q389Q | caG | caA | 2 | 2 | AY.42 | 0.00008 |
N | 389 | Q389R | cAg | cGg | 2 | 2 | AY.43 | 0.000009 |
N | 389 | Q389del | CAG | --- | 2 | 2 | AY.44 | 0.000012 |
N | 389 | Q389H | caG | caT | 2 | 2 | AY.46.4 | 0.000329 |
N | 389 | Q389H | caG | caT | 2 | 2 | AY.46.6 | 0.000144 |
N | 389 | Q389H | caG | caT | 2 | 2 | AY.48 | 0.00093 |
N | 389 | Q389H | caG | caT | 2 | 2 | AY.5.4 | 0.000553 |
N | 389 | Q389H | caG | caT | 2 | 2 | AY.55 | 0.001835 |
N | 389 | Q389L | cAg | cTg | 2 | 2 | AY.55 | 0.001835 |
N | 389 | Q389L | cAg | cTg | 2 | 2 | AY.57 | 0.001312 |
N | 389 | Q389H | caG | caT | 2 | 2 | AY.65 | 0.001066 |
N | 389 | Q389Q | caG | caA | 2 | 2 | AY.75 | 0.000112 |
N | 389 | Q389H | caG | caC | 2 | 2 | AY.85 | 0.000854 |
N | 389 | Q389H | caG | caT | 2 | 2 | B | 0.000256 |
N | 389 | Q389R | cAg | cGg | 2 | 2 | B.1 | 0.000018 |
N | 389 | Q389L | cAg | cTg | 2 | 2 | B.1.1 | 0.000036 |
N | 389 | Q389H | caG | caT | 2 | 2 | B.1.1.10 | 0.00223 |
N | 389 | Q389H | caG | caT | 2 | 2 | B.1.1.163 | 0.015267 |
N | 389 | Q389H | caG | caT | 2 | 2 | B.1.1.168 | 0.052632 |
N | 389 | Q389Q | caG | caA | 2 | 2 | B.1.1.170 | 0.002494 |
N | 389 | Q389H | caG | caT | 2 | 2 | B.1.1.196 | 0.011429 |
N | 389 | Q389H | caG | caT | 2 | 2 | B.1.1.222 | 0.000408 |
N | 389 | Q389H | caG | caT | 2 | 2 | B.1.1.243 | 0.008163 |
N | 389 | Q389H | caG | caT | 2 | 2 | B.1.1.326 | 0.003521 |
N | 389 | Q389H | caG | caT | 2 | 2 | B.1.1.347 | 0.036364 |
N | 389 | Q389Q | caG | caA | 2 | 2 | B.1.1.354 | 0.008772 |
N | 389 | Q389Q | caG | caA | 2 | 2 | B.1.1.377 | 0.002762 |
N | 389 | Q389H | caG | caT | 2 | 2 | B.1.1.389 | 0.012121 |
N | 389 | Q389H | caG | caT | 2 | 2 | B.1.1.398 | 0.006452 |
N | 389 | Q389H | caG | caT | 2 | 2 | B.1.1.409 | 0.005666 |
N | 389 | Q389del1 | caG | ca- | 2 | 2 | B.1.1.519 | 0.000079 |
N | 389 | Q389del1 | Cag | -ag | 2 | 2 | B.1.1.7 | 0.000002 |
N | 389 | Q389P | cAg | cCg | 2 | 2 | B.1.1.7 | 0.000002 |
N | 389 | Q389X | Cag | Tag | 2 | 2 | B.1.1.7 | 0.000002 |
N | 389 | Q389L | cAg | cTg | 2 | 2 | B.1.177 | 0.000026 |
N | 389 | Q389R | cAg | cGg | 2 | 2 | B.1.177 | 0.000026 |
N | 389 | Q389X | Cag | Tag | 2 | 2 | B.1.2 | 0.000018 |
N | 389 | Q389R | cAg | cGg | 2 | 2 | B.1.2 | 0.000018 |
N | 389 | Q389Q | caG | caA | 2 | 2 | B.1.214.2 | 0.001199 |
N | 389 | Q389H | caG | caT | 2 | 2 | B.1.351.3 | 0.001753 |
N | 389 | Q389H | caG | caC | 1 | 2 | B.1.400 | 0.000429 |
N | 389 | Q389H | caG | caT | 1 | 2 | B.1.400 | 0.000429 |
N | 389 | Q389L | cAg | cTg | 2 | 2 | B.1.429 | 0.000047 |
N | 389 | Q389H | caG | caT | 2 | 2 | B.1.517 | 0.000854 |
N | 389 | Q389del | CAG | --- | 2 | 2 | B.1.526 | 0.000047 |
N | 389 | Q389H | caG | caT | 2 | 2 | B.1.564 | 0.000852 |
N | 389 | Q389H | caG | caT | 2 | 2 | B.1.612 | 0.005305 |
N | 389 | Q389Q | caG | caA | 2 | 2 | B.1.621 | 0.000177 |
N | 389 | Q389del | CAG | --- | 2 | 2 | B.1.621.1 | 0.001012 |
N | 389 | Q389H | caG | caT | 2 | 2 | C.36.3 | 0.001134 |
N | 389 | Q389H | caG | caT | 2 | 2 | C.37 | 0.000232 |
N | 389 | Q389H | caG | caC | 1 | 2 | D.2 | 0.000075 |
N | 389 | Q389H | caG | caT | 1 | 2 | D.2 | 0.000075 |
N | 389 | Q389del | CAG | --- | 2 | 2 | P.1.14 | 0.000096 |
N | 389 | Q389H | caG | caT | 2 | 2 | Q.4 | 0.00091 |
N | 389 | Q389Q | caG | caA | 2 | 2 | Q.8 | 0.00033 |
N | 389 | Q389P | cAg | cCg | 1 | 1 | 0.055556 | |
N | 389 | Q389T | CAg | ACg | 1 | 1 | 0.055556 | |
N | 389 | Q389K | Cag | Aag | 1 | 1 | A | 0.000387 |
N | 389 | Q389H | caG | caT | 1 | 1 | A | 0.000387 |
N | 389 | Q389Q | caG | caA | 1 | 1 | A | 0.000387 |
N | 389 | Q389L | cAg | cTg | 1 | 1 | A.2.5.2 | 0.001572 |
N | 389 | Q389H | caG | caT | 1 | 1 | A.27 | 0.001656 |
N | 389 | Q389H | caG | caT | 1 | 1 | A.5 | 0.001923 |
N | 389 | Q389R | cAg | cGg | 1 | 1 | AE.1 | 0.011364 |
N | 389 | Q389T | CAg | ACg | 1 | 1 | All | 0 |
N | 389 | Q389K | CaG | AaA | 1 | 1 | AU.1 | 0.001266 |
N | 389 | Q389H | caG | caT | 1 | 1 | AU.2 | 0.002421 |
N | 389 | Q389X | Cag | Tag | 1 | 1 | AU.3 | 0.00211 |
N | 389 | Q389del | CAG | --- | 1 | 1 | AY.100 | 0.000046 |
N | 389 | Q389del | CAG | --- | 1 | 1 | AY.101 | 0.00049 |
N | 389 | Q389del | CAG | --- | 1 | 1 | AY.102 | 0.000027 |
N | 389 | Q389X | Cag | Tag | 1 | 1 | AY.102 | 0.000027 |
N | 389 | Q389L | cAg | cTg | 1 | 1 | AY.102 | 0.000027 |
N | 389 | Q389E | Cag | Gag | 1 | 1 | AY.103 | 0.000006 |
N | 389 | Q389L | cAg | cTg | 1 | 1 | AY.103 | 0.000006 |
N | 389 | Q389H | caG | caT | 1 | 1 | AY.105 | 0.000643 |
N | 389 | Q389L | cAG | cTT | 1 | 1 | AY.105 | 0.000643 |
N | 389 | Q389Q | caG | caA | 1 | 1 | AY.110 | 0.000113 |
N | 389 | Q389Q | caG | caA | 1 | 1 | AY.114 | 0.000231 |
N | 389 | Q389del | CAG | --- | 1 | 1 | AY.114 | 0.000231 |
N | 389 | Q389L | cAg | cTg | 1 | 1 | AY.116 | 0.000287 |
N | 389 | Q389L | cAg | cTg | 1 | 1 | AY.119 | 0.000035 |
N | 389 | Q389Q | caG | caA | 1 | 1 | AY.119 | 0.000035 |
N | 389 | Q389H | caG | caT | 1 | 1 | AY.120.1 | 0.000321 |
N | 389 | Q389del1 | caG | ca- | 1 | 1 | AY.121 | 0.000135 |
N | 389 | Q389H | caG | caT | 1 | 1 | AY.14 | 0.000088 |
N | 389 | Q389Q | caG | caA | 1 | 1 | AY.14 | 0.000088 |
N | 389 | Q389L | cAg | cTg | 1 | 1 | AY.16.1 | 0.00047 |
N | 389 | Q389Q | caG | caA | 1 | 1 | AY.23 | 0.00007 |
N | 389 | Q389L | cAg | cTg | 1 | 1 | AY.23 | 0.00007 |
N | 389 | Q389K | Cag | Aag | 1 | 1 | AY.25 | 0.000006 |
N | 389 | Q389R | cAg | cGg | 1 | 1 | AY.25 | 0.000006 |
N | 389 | Q389Q | caG | caA | 1 | 1 | AY.26 | 0.000028 |
N | 389 | Q389H | caG | caT | 1 | 1 | AY.27 | 0.000065 |
N | 389 | Q389L | cAg | cTg | 1 | 1 | AY.29 | 0.000016 |
N | 389 | Q389R | cAg | cGg | 1 | 1 | AY.29 | 0.000016 |
N | 389 | Q389E | Cag | Gag | 1 | 1 | AY.29 | 0.000016 |
N | 389 | Q389del | CAG | --- | 1 | 1 | AY.29.1 | 0.000221 |
N | 389 | Q389R | cAg | cGg | 1 | 1 | AY.3 | 0.00001 |
N | 389 | Q389H | caG | caT | 1 | 1 | AY.30 | 0.000396 |
N | 389 | Q389del | CAG | --- | 1 | 1 | AY.31 | 0.018519 |
N | 389 | Q389Q | caG | caA | 1 | 1 | AY.32 | 0.000532 |
N | 389 | Q389del | CAG | --- | 1 | 1 | AY.33 | 0.000067 |
N | 389 | Q389H | caG | caT | 1 | 1 | AY.37 | 0.000316 |
N | 389 | Q389Q | caG | caA | 1 | 1 | AY.38 | 0.000499 |
N | 389 | Q389K | Cag | Aag | 1 | 1 | AY.4 | 0.000002 |
N | 389 | Q389R | cAg | cGg | 1 | 1 | AY.4 | 0.000002 |
N | 389 | Q389H | caG | caT | 1 | 1 | AY.40 | 0.000964 |
N | 389 | Q389H | caG | caT | 1 | 1 | AY.41 | 0.000294 |
N | 389 | Q389X | Cag | Tag | 1 | 1 | AY.44 | 0.000006 |
N | 389 | Q389L | cAg | cTg | 1 | 1 | AY.46 | 0.000104 |
N | 389 | Q389H | caG | caT | 1 | 1 | AY.46.5 | 0.000198 |
N | 389 | Q389Q | caG | caA | 1 | 1 | AY.47 | 0.000031 |
N | 389 | Q389del | CAG | --- | 1 | 1 | AY.47 | 0.000031 |
N | 389 | Q389Q | caG | caA | 1 | 1 | AY.5.4 | 0.000277 |
N | 389 | Q389Q | caG | caA | 1 | 1 | AY.55 | 0.000917 |
N | 389 | Q389Q | caG | caA | 1 | 1 | AY.58 | 0.000907 |
N | 389 | Q389Q | caG | caA | 1 | 1 | AY.60 | 0.000938 |
N | 389 | Q389del | CAG | --- | 1 | 1 | AY.62 | 0.000436 |
N | 389 | Q389Q | caG | caA | 1 | 1 | AY.67 | 0.000464 |
N | 389 | Q389E | Cag | Gag | 1 | 1 | AY.67 | 0.000464 |
N | 389 | Q389Q | caG | caA | 1 | 1 | AY.69 | 0.000187 |
N | 389 | Q389H | caG | caT | 1 | 1 | AY.69 | 0.000187 |
N | 389 | Q389H | caG | caT | 1 | 1 | AY.7.2 | 0.000559 |
N | 389 | Q389Q | caG | caA | 1 | 1 | AY.71 | 0.000475 |
N | 389 | Q389L | cAg | cTg | 1 | 1 | AY.71 | 0.000475 |
N | 389 | Q389L | cAg | cTg | 1 | 1 | AY.75 | 0.000056 |
N | 389 | Q389Q | caG | caA | 1 | 1 | AY.75.1 | 0.00018 |
N | 389 | Q389H | caG | caT | 1 | 1 | AY.79 | 0.001211 |
N | 389 | Q389H | caG | caT | 1 | 1 | AY.80 | 0.001129 |
N | 389 | Q389del | CAG | --- | 1 | 1 | AY.84 | 0.000437 |
N | 389 | Q389H | caG | caT | 1 | 1 | AY.84 | 0.000437 |
N | 389 | Q389Q | caG | caA | 1 | 1 | AY.9 | 0.000068 |
N | 389 | Q389Q | caG | caA | 1 | 1 | AY.9.2 | 0.000037 |
N | 389 | Q389H | caG | caC | 1 | 1 | AY.91 | 0.00073 |
N | 389 | Q389H | caG | caT | 1 | 1 | AY.99.1 | 0.001553 |
N | 389 | Q389H | caG | caT | 1 | 1 | AY.99.2 | 0.000092 |
N | 389 | Q389Q | caG | caA | 1 | 1 | B | 0.000128 |
N | 389 | Q389del1 | caG | ca- | 1 | 1 | B.1 | 0.000009 |
N | 389 | Q389X | Cag | Tag | 1 | 1 | B.1 | 0.000009 |
N | 389 | Q389K | Cag | Aag | 1 | 1 | B.1.1 | 0.000018 |
N | 389 | Q389del | CAG | --- | 1 | 1 | B.1.1.139 | 0.022727 |
N | 389 | Q389Q | caG | caA | 1 | 1 | B.1.1.161 | 0.003534 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.1.172 | 0.018182 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.1.198 | 0.001468 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.1.214 | 0.000055 |
N | 389 | Q389Q | caG | caA | 1 | 1 | B.1.1.216 | 0.00089 |
N | 389 | Q389Q | caG | caA | 1 | 1 | B.1.1.219 | 0.005 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.1.221 | 0.010101 |
N | 389 | Q389del | CAG | --- | 1 | 1 | B.1.1.236 | 0.006897 |
N | 389 | Q389K | CaG | AaA | 1 | 1 | B.1.1.27 | 0.00565 |
N | 389 | Q389L | cAg | cTg | 1 | 1 | B.1.1.282 | 0.011628 |
N | 389 | Q389del | CAG | --- | 1 | 1 | B.1.1.284 | 0.000107 |
N | 389 | Q389L | cAg | cTg | 1 | 1 | B.1.1.284 | 0.000107 |
N | 389 | Q389Q | caG | caA | 1 | 1 | B.1.1.291 | 0.000742 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.1.294 | 0.001266 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.1.306 | 0.000438 |
N | 389 | Q389del | CAG | --- | 1 | 1 | B.1.1.318 | 0.000302 |
N | 389 | Q389L | cAg | cTg | 1 | 1 | B.1.1.326 | 0.001761 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.1.337 | 0.003597 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.1.348 | 0.000796 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.1.368 | 0.003086 |
N | 389 | Q389del | CAG | --- | 1 | 1 | B.1.1.37 | 0.000193 |
N | 389 | Q389del | CAG | --- | 1 | 1 | B.1.1.372 | 0.000689 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.1.374 | 0.002375 |
N | 389 | Q389X | Cag | Tag | 1 | 1 | B.1.1.39 | 0.00051 |
N | 389 | Q389Q | caG | caA | 1 | 1 | B.1.1.39 | 0.00051 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.1.397 | 0.002252 |
N | 389 | Q389H | caG | caC | 1 | 1 | B.1.1.413 | 0.006897 |
N | 389 | Q389H | caG | caC | 1 | 1 | B.1.1.416 | 0.000905 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.1.432 | 0.001266 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.1.46 | 0.004367 |
N | 389 | Q389Q | caG | caA | 1 | 1 | B.1.1.48 | 0.002874 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.1.518 | 0.006329 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.1.521 | 0.005348 |
N | 389 | Q389Q | caG | caA | 1 | 1 | B.1.1.58 | 0.005376 |
N | 389 | Q389R | cAg | cGg | 1 | 1 | B.1.1.70 | 0.000341 |
N | 389 | Q389Q | caG | caA | 1 | 1 | B.1.1.70 | 0.000341 |
N | 389 | Q389Q | caG | caA | 1 | 1 | B.1.1.72 | 0.030303 |
N | 389 | Q389Q | caG | caA | 1 | 1 | B.1.1.8 | 0.003584 |
N | 389 | Q389L | cAg | cTg | 1 | 1 | B.1.126 | 0.001276 |
N | 389 | Q389L | cAg | cTg | 1 | 1 | B.1.157 | 0.002985 |
N | 389 | Q389Q | caG | caA | 1 | 1 | B.1.160 | 0.000031 |
N | 389 | Q389L | cAg | cTg | 1 | 1 | B.1.160 | 0.000031 |
N | 389 | Q389del | CAG | --- | 1 | 1 | B.1.160.16 | 0.000929 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.160.7 | 0.002079 |
N | 389 | Q389X | Cag | Tag | 1 | 1 | B.1.160.8 | 0.001289 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.160.9 | 0.007194 |
N | 389 | Q389del | CAG | --- | 1 | 1 | B.1.162 | 0.005025 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.177.17 | 0.000821 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.177.21 | 0.000076 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.177.23 | 0.003236 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.177.31 | 0.011494 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.177.44 | 0.000519 |
N | 389 | Q389Q | caG | caA | 1 | 1 | B.1.177.45 | 0.000381 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.177.56 | 0.000668 |
N | 389 | Q389R | cAg | cGg | 1 | 1 | B.1.177.57 | 0.000281 |
N | 389 | Q389del | CAG | --- | 1 | 1 | B.1.177.62 | 0.001192 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.177.66 | 0.041667 |
N | 389 | Q389K | Cag | Aag | 1 | 1 | B.1.177.72 | 0.00339 |
N | 389 | Q389L | cAg | cTg | 1 | 1 | B.1.177.72 | 0.00339 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.177.72 | 0.00339 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.177.73 | 0.000566 |
N | 389 | Q389L | cAg | cTg | 1 | 1 | B.1.177.73 | 0.000566 |
N | 389 | Q389X | Cag | Tag | 1 | 1 | B.1.177.77 | 0.000726 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.177.80 | 0.001912 |
N | 389 | Q389E | Cag | Gag | 1 | 1 | B.1.177.81 | 0.000189 |
N | 389 | Q389E | Cag | Gag | 1 | 1 | B.1.2 | 0.000009 |
N | 389 | Q389del1 | Cag | -ag | 1 | 1 | B.1.221.3 | 0.000833 |
N | 389 | Q389del | CAG | --- | 1 | 1 | B.1.234 | 0.000132 |
N | 389 | Q389L | cAg | cTg | 1 | 1 | B.1.234 | 0.000132 |
N | 389 | Q389K | Cag | Aag | 1 | 1 | B.1.242 | 0.018868 |
N | 389 | Q389Q | caG | caA | 1 | 1 | B.1.243 | 0.00007 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.258.11 | 0.000396 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.319 | 0.003049 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.320 | 0.001245 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.329 | 0.000608 |
N | 389 | Q389L | cAg | cTg | 1 | 1 | B.1.351 | 0.00003 |
N | 389 | Q389Q | caG | caA | 1 | 1 | B.1.351 | 0.00003 |
N | 389 | Q389L | cAg | cTg | 1 | 1 | B.1.36.1 | 0.00114 |
N | 389 | Q389E | Cag | Gag | 1 | 1 | B.1.36.10 | 0.004785 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.36.18 | 0.00042 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.36.31 | 0.001751 |
N | 389 | Q389L | cAg | cTg | 1 | 1 | B.1.36.35 | 0.002604 |
N | 389 | Q389Q | caG | caA | 1 | 1 | B.1.36.36 | 0.000602 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.36.8 | 0.001 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.404 | 0.001302 |
N | 389 | Q389del | CAG | --- | 1 | 1 | B.1.415 | 0.014286 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.416.1 | 0.001563 |
N | 389 | Q389del | CAG | --- | 1 | 1 | B.1.416.1 | 0.001563 |
N | 389 | Q389H | caG | caC | 1 | 1 | B.1.428 | 0.00102 |
N | 389 | Q389K | CaG | AaA | 1 | 1 | B.1.429 | 0.000024 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.438.1 | 0.000107 |
N | 389 | Q389del | CAG | --- | 1 | 1 | B.1.438.1 | 0.000107 |
N | 389 | Q389L | cAg | cTg | 1 | 1 | B.1.525 | 0.000113 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.533 | 0.009615 |
N | 389 | Q389H | caG | caC | 1 | 1 | B.1.550 | 0.013699 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.582 | 0.000491 |
N | 389 | Q389X | Cag | Tag | 1 | 1 | B.1.582 | 0.000491 |
N | 389 | Q389del | CAG | --- | 1 | 1 | B.1.588 | 0.00091 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.590 | 0.004545 |
N | 389 | Q389K | CaG | AaA | 1 | 1 | B.1.617.1 | 0.000129 |
N | 389 | Q389K | Cag | Aag | 1 | 1 | B.1.617.2 | 0.000004 |
N | 389 | Q389R | cAg | cGg | 1 | 1 | B.1.617.2 | 0.000004 |
N | 389 | Q389L | cAg | cTg | 1 | 1 | B.1.619 | 0.000871 |
N | 389 | Q389del1 | caG | ca- | 1 | 1 | B.1.620 | 0.000946 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.1.628 | 0.000352 |
N | 389 | Q389del | CAG | --- | 1 | 1 | B.1.630 | 0.005236 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.39 | 0.002331 |
N | 389 | Q389H | caG | caT | 1 | 1 | B.58 | 0.010204 |
N | 389 | Q389H | caG | caT | 1 | 1 | C.1.2 | 0.004255 |
N | 389 | Q389H | caG | caT | 1 | 1 | C.17 | 0.055556 |
N | 389 | Q389L | cAg | cTg | 1 | 1 | C.36 | 0.000911 |
N | 389 | Q389L | cAg | cTg | 1 | 1 | D.2 | 0.000075 |
N | 389 | Q389L | cAg | cTg | 1 | 1 | P.1 | 0.000016 |
N | 389 | Q389R | cAg | cGg | 1 | 1 | P.1 | 0.000016 |
N | 389 | Q389Q | caG | caA | 1 | 1 | P.1 | 0.000016 |
N | 389 | Q389Q | caG | caA | 1 | 1 | P.1.12 | 0.000484 |
N | 389 | Q389Q | caG | caA | 1 | 1 | P.1.15 | 0.000232 |
N | 389 | Q389L | cAg | cTg | 1 | 1 | P.2 | 0.000187 |
N | 389 | Q389H | caG | caT | 1 | 1 | Q.1 | 0.000126 |
N | 389 | Q389Y | CaG | TaT | 1 | 1 | Q.3 | 0.000145 |
N | 389 | Q389Q | caG | caA | 1 | 1 | Q.4 | 0.000455 |
N | 389 | Q389R | cAg | cGg | 1 | 1 | Q.8 | 0.000165 |
N | 389 | Q389H | caG | caT | 1 | 1 | R.1 | 0.00009 |
N | 389 | Q389Q | caG | caA | 1 | 1 | W.4 | 0.001351 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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