CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 389

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	389	Q389H		nonsyn	caG	caT	7760	7569	0.975387	29438-29440
N	389	Q389H		nonsyn	caG	caC	7760	191	0.0246134	29438-29440
N	389	Q389L		nonsyn	cAg	cTg	5417	5409	0.998523	29438-29440
N	389	Q389L		nonsyn	CAg	TTg	5417	2	0.000369208	29438-29440
N	389	Q389L		nonsyn	cAG	cTT	5417	2	0.000369208	29438-29440
N	389	Q389L		nonsyn	cAG	cTC	5417	2	0.000369208	29438-29440
N	389	Q389L		nonsyn	CAG	TTA	5417	2	0.000369208	29438-29440
N	389	Q389Q		syn	caG	caA	3952	3952	1	29438-29440
N	389	Q389del		del	CAG	---	115	115	1	29438-29440
N	389	Q389R		nonsyn	cAg	cGg	36	36	1	29438-29440
N	389	Q389K		nonsyn	Cag	Aag	27	21	0.777778	29438-29440
N	389	Q389K		nonsyn	CaG	AaA	27	6	0.222222	29438-29440
N	389	Q389E		nonsyn	Cag	Gag	23	14	0.608696	29438-29440
N	389	Q389E		nonsyn	CaG	GaA	23	9	0.391304	29438-29440
N	389	Q389X		nonsyn	Cag	Tag	14	12	0.857143	29438-29440
N	389	Q389X		nonsyn	CaG	TaA	14	2	0.142857	29438-29440
N	389	Q389P		nonsyn	cAg	cCg	12	12	1	29438-29440
N	389	Q389del1		del	caG	ca-	10	5	0.5	29438-29440
N	389	Q389del1		del	Cag	-ag	10	5	0.5	29438-29440
N	389	Q389Y		nonsyn	CaG	TaT	5	3	0.6	29438-29440
N	389	Q389Y		nonsyn	CaG	TaC	5	2	0.4	29438-29440
N	389	Q389N		nonsyn	CaG	AaC	4	2	0.5	29438-29440
N	389	Q389N		nonsyn	CaG	AaT	4	2	0.5	29438-29440
N	389	Q389T		nonsyn	CAg	ACg	1	1	1	29438-29440

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	389	Q389H	caG	caT	7569	7760	All	0.001448
N	389	Q389H	caG	caC	191	7760	All	0.000037
N	389	Q389L	cAg	cTg	5409	5417	All	0.001035
N	389	Q389L	CAG	TTA	2	5417	All	0
N	389	Q389L	cAG	cTC	2	5417	All	0
N	389	Q389L	cAG	cTT	2	5417	All	0
N	389	Q389L	CAg	TTg	2	5417	All	0
N	389	Q389L	cAg	cTg	5178	5179	B.1.2	0.045594
N	389	Q389L	CAg	TTg	1	5179	B.1.2	0.000009
N	389	Q389Q	caG	caA	3952	3952	All	0.000756
N	389	Q389H	caG	caT	3160	3216	B.1.1.7	0.002829
N	389	Q389H	caG	caC	56	3216	B.1.1.7	0.00005
N	389	Q389Q	caG	caA	1726	1726	AY.62	0.75207
N	389	Q389H	caG	caT	1171	1182	AY.4	0.001823
N	389	Q389H	caG	caC	11	1182	AY.4	0.000017
N	389	Q389Q	caG	caA	983	983	B.1.1.7	0.00088
N	389	Q389Q	caG	caA	517	517	B.1.617.2	0.001947
N	389	Q389H	caG	caT	471	471	Q.3	0.06831
N	389	Q389H	caG	caT	336	392	B.1.617.2	0.001265
N	389	Q389H	caG	caC	56	392	B.1.617.2	0.000211
N	389	Q389H	caG	caT	284	284	B.1.623	0.152361
N	389	Q389H	caG	caT	157	164	AY.43	0.000696
N	389	Q389H	caG	caC	7	164	AY.43	0.000031
N	389	Q389H	caG	caT	103	118	B.1.2	0.000907
N	389	Q389H	caG	caC	15	118	B.1.2	0.000132
N	389	Q389del	CAG	---	115	115	All	0.000022
N	389	Q389Q	caG	caA	109	109	AY.43	0.000483
N	389	Q389Q	caG	caA	106	106	AY.103	0.000658
N	389	Q389Q	caG	caA	104	104	AY.39	0.00257
N	389	Q389H	caG	caT	95	101	B.1.258	0.006322
N	389	Q389H	caG	caC	6	101	B.1.258	0.000399
N	389	Q389H	caG	caT	100	100	AY.103	0.000621
N	389	Q389H	caG	caT	97	97	B.1.369	0.027667
N	389	Q389Q	caG	caA	68	68	AY.4.2	0.001475
N	389	Q389H	caG	caT	63	63	B.1.427	0.003181
N	389	Q389H	caG	caT	59	61	B.1.466.2	0.023083
N	389	Q389H	caG	caC	2	61	B.1.466.2	0.000782
N	389	Q389H	caG	caT	59	60	B.1	0.00054
N	389	Q389H	caG	caC	1	60	B.1	0.000009
N	389	Q389H	caG	caT	56	56	AY.35	0.013051
N	389	Q389H	caG	caT	56	56	B.1.177	0.000737
N	389	Q389H	caG	caT	55	55	B.1.243	0.003827
N	389	Q389H	caG	caT	51	51	AY.3	0.000507
N	389	Q389H	caG	caT	46	46	AY.71	0.021853
N	389	Q389H	caG	caT	46	46	B.1.575	0.013956
N	389	Q389H	caG	caT	45	45	B.1.526	0.001058
N	389	Q389H	caG	caT	44	44	P.1	0.000693
N	389	Q389Q	caG	caA	41	41	AY.4	0.000064
N	389	Q389H	caG	caT	38	40	AY.44	0.000231
N	389	Q389H	caG	caC	2	40	AY.44	0.000012
N	389	Q389R	cAg	cGg	36	36	All	0.000007
N	389	Q389H	caG	caT	35	35	B.1.1.63	0.013503
N	389	Q389H	caG	caT	34	34	B.1.396	0.023994
N	389	Q389H	caG	caT	32	32	B.1.1	0.000581
N	389	Q389L	cAg	cTg	31	32	B.1.596	0.002701
N	389	Q389L	CAg	TTg	1	32	B.1.596	0.000087
N	389	Q389Q	caG	caA	31	31	AY.3	0.000308
N	389	Q389H	caG	caT	30	31	AY.46	0.003122
N	389	Q389H	caG	caC	1	31	AY.46	0.000104
N	389	Q389L	cAg	cTg	31	31	B.1.617.2	0.000117
N	389	Q389H	caG	caT	30	30	AY.118	0.001879
N	389	Q389L	cAg	cTg	30	30	AY.61	0.003143
N	389	Q389H	caG	caT	29	29	B.1.240	0.006251
N	389	Q389H	caG	caT	28	28	B.1.1.519	0.001112
N	389	Q389K	Cag	Aag	21	27	All	0.000004
N	389	Q389K	CaG	AaA	6	27	All	0.000001
N	389	Q389L	cAg	cTg	25	27	B.1	0.000229
N	389	Q389L	cAG	cTT	1	27	B.1	0.000009
N	389	Q389L	cAG	cTC	1	27	B.1	0.000009
N	389	Q389Q	caG	caA	26	26	AY.92	0.007469
N	389	Q389H	caG	caT	26	26	B.1.351	0.000773
N	389	Q389H	caG	caT	25	25	B.1.429	0.000588
N	389	Q389Q	caG	caA	24	24	AY.102	0.000636
N	389	Q389H	caG	caT	24	24	B.1.160	0.000749
N	389	Q389E	Cag	Gag	14	23	All	0.000003
N	389	Q389E	CaG	GaA	9	23	All	0.000002
N	389	Q389del	CAG	---	21	21	B.1.617.2	0.000079
N	389	Q389H	caG	caT	19	19	AY.68	0.005201
N	389	Q389L	cAg	cTg	19	19	B.1.1.7	0.000017
N	389	Q389H	caG	caT	18	18	AY.47	0.00056
N	389	Q389H	caG	caT	17	17	AY.100	0.000782
N	389	Q389H	caG	caT	17	17	AY.29	0.000268
N	389	Q389Q	caG	caA	17	17	AY.44	0.000103
N	389	Q389H	caG	caT	16	16	AY.102	0.000424
N	389	Q389H	caG	caT	16	16	AY.121	0.002165
N	389	Q389H	caG	caT	15	16	AY.25	0.00009
N	389	Q389H	caG	caC	1	16	AY.25	0.000006
N	389	Q389Q	caG	caA	16	16	B.1	0.000147
N	389	Q389H	caG	caT	16	16	B.1.234	0.002111
N	389	Q389H	caG	caT	16	16	B.1.561	0.006352
N	389	Q389X	Cag	Tag	12	14	All	0.000002
N	389	Q389X	CaG	TaA	2	14	All	0
N	389	Q389Q	caG	caA	14	14	B.1.2	0.000123
N	389	Q389H	caG	caT	13	13	AY.61	0.001362
N	389	Q389R	cAg	cGg	13	13	B.1.1.7	0.000012
N	389	Q389H	caG	caT	13	13	B.1.324	0.020867
N	389	Q389P	cAg	cCg	12	12	All	0.000002
N	389	Q389H	caG	caT	12	12	AY.3.1	0.001023
N	389	Q389H	caG	caT	12	12	B.1.1.456	0.666667
N	389	Q389H	caG	caT	12	12	C.36	0.010929
N	389	Q389H	caG	caT	11	11	AY.9.1	0.000921
N	389	Q389E	CaG	GaA	9	11	B.1.1.7	0.000008
N	389	Q389E	Cag	Gag	2	11	B.1.1.7	0.000002
N	389	Q389H	caG	caT	11	11	P.1.14	0.000526
N	389	Q389del1	caG	ca-	5	10	All	0.000001
N	389	Q389del1	Cag	-ag	5	10	All	0.000001
N	389	Q389H	caG	caT	10	10	AY.23	0.000697
N	389	Q389L	cAg	cTg	10	10	AY.4	0.000016
N	389	Q389del	CAG	---	10	10	AY.43	0.000044
N	389	Q389H	caG	caT	10	10	P.2	0.001866
N	389	Q389Q	caG	caA	10	10	Q.1	0.001263
N	389	Q389H	caG	caT	9	9	A.21	0.024931
N	389	Q389H	caG	caT	9	9	AY.117	0.000761
N	389	Q389Q	caG	caA	9	9	AY.117	0.000761
N	389	Q389H	caG	caT	9	9	AY.36	0.001334
N	389	Q389H	caG	caT	9	9	AY.42	0.000362
N	389	Q389Q	caG	caA	9	9	B.1.1	0.000163
N	389	Q389L	cAg	cTg	9	9	B.1.1.519	0.000357
N	389	Q389Q	caG	caA	9	9	B.1.526	0.000212
N	389	Q389L	cAg	cTg	9	9	C.37	0.001045
N	389	Q389Q	caG	caA	8	8	AY.120	0.000297
N	389	Q389H	caG	caT	8	8	AY.20	0.000311
N	389	Q389H	caG	caT	7	8	AY.39	0.000173
N	389	Q389H	caG	caC	1	8	AY.39	0.000025
N	389	Q389del	CAG	---	8	8	AY.4	0.000012
N	389	Q389H	caG	caC	6	8	AY.4.5	0.000645
N	389	Q389H	caG	caT	2	8	AY.4.5	0.000215
N	389	Q389H	caG	caT	8	8	B.1.1.33	0.003367
N	389	Q389H	caG	caT	5	8	B.1.497	0.001574
N	389	Q389H	caG	caC	3	8	B.1.497	0.000944
N	389	Q389H	caG	caT	8	8	B.1.525	0.000905
N	389	Q389H	caG	caT	7	7	AY.13	0.001127
N	389	Q389del	CAG	---	7	7	AY.25	0.000042
N	389	Q389L	cAg	cTg	6	7	AY.25	0.000036
N	389	Q389L	CAG	TTA	1	7	AY.25	0.000006
N	389	Q389H	caG	caT	7	7	AY.4.2	0.000152
N	389	Q389H	caG	caT	7	7	AY.45	0.000852
N	389	Q389del	CAG	---	7	7	B.1.1.7	0.000006
N	389	Q389Q	caG	caA	7	7	B.1.177	0.000092
N	389	Q389H	caG	caT	7	7	B.1.177.4	0.001477
N	389	Q389Q	caG	caA	7	7	B.1.429	0.000165
N	389	Q389Q	caG	caA	7	7	Q.3	0.001015
N	389	Q389H	caG	caT	6	6	AY.33	0.000401
N	389	Q389H	caG	caT	6	6	AY.75	0.000336
N	389	Q389H	caG	caT	6	6	AY.75.1	0.001082
N	389	Q389H	caG	caT	4	6	AY.9	0.00027
N	389	Q389H	caG	caC	2	6	AY.9	0.000135
N	389	Q389L	cAg	cTg	6	6	AY.91.1	0.02439
N	389	Q389H	caG	caT	6	6	AY.98	0.000474
N	389	Q389H	caG	caT	5	6	AY.98.1	0.000242
N	389	Q389H	caG	caC	1	6	AY.98.1	0.000048
N	389	Q389del	CAG	---	6	6	B.1	0.000055
N	389	Q389H	caG	caT	6	6	B.1.1.284	0.000644
N	389	Q389H	caG	caT	6	6	B.1.1.39	0.003058
N	389	Q389K	Cag	Aag	6	6	B.1.1.7	0.000005
N	389	Q389H	caG	caT	6	6	B.1.177.40	0.030928
N	389	Q389H	caG	caT	6	6	B.1.621.1	0.003035
N	389	Q389K	Cag	Aag	3	5		0.166667
N	389	Q389K	CaG	AaA	2	5		0.111111
N	389	Q389Y	CaG	TaT	3	5	All	0.000001
N	389	Q389Y	CaG	TaC	2	5	All	0
N	389	Q389Q	caG	caA	5	5	AY.20	0.000194
N	389	Q389Q	caG	caA	5	5	AY.25	0.00003
N	389	Q389P	cAg	cCg	5	5	AY.3	0.00005
N	389	Q389H	caG	caT	5	5	AY.5	0.000103
N	389	Q389H	caG	caT	3	5	AY.9.2	0.00011
N	389	Q389H	caG	caC	2	5	AY.9.2	0.000073
N	389	Q389Q	caG	caA	5	5	B.1.177.4	0.001055
N	389	Q389H	caG	caT	5	5	B.1.177.43	0.007386
N	389	Q389H	caG	caT	5	5	B.1.177.82	0.002387
N	389	Q389K	Cag	Aag	5	5	B.1.2	0.000044
N	389	Q389del	CAG	---	5	5	C.37	0.00058
N	389	Q389Q	caG	caA	5	5	C.37	0.00058
N	389	Q389H	caG	caT	5	5	P.1.10	0.001347
N	389	Q389H	caG	caT	5	5	Q.8	0.000825
N	389	Q389H	caG	caT	2	4		0.111111
N	389	Q389N	CaG	AaC	2	4		0.111111
N	389	Q389N	CaG	AaT	2	4		0.111111
N	389	Q389Y	CaG	TaC	2	4		0.111111
N	389	Q389Y	CaG	TaT	2	4		0.111111
N	389	Q389H	caG	caC	2	4		0.111111
N	389	Q389N	CaG	AaT	2	4	All	0
N	389	Q389N	CaG	AaC	2	4	All	0
N	389	Q389H	caG	caT	4	4	AY.120.2	0.005141
N	389	Q389H	caG	caT	3	4	AY.26	0.000085
N	389	Q389H	caG	caC	1	4	AY.26	0.000028
N	389	Q389H	caG	caT	4	4	AY.39.1	0.000158
N	389	Q389E	Cag	Gag	4	4	AY.4	0.000006
N	389	Q389L	cAg	cTg	3	4	AY.43	0.000013
N	389	Q389L	cAG	cTC	1	4	AY.43	0.000004
N	389	Q389H	caG	caT	3	4	AY.6	0.000123
N	389	Q389H	caG	caC	1	4	AY.6	0.000041
N	389	Q389H	caG	caT	4	4	AY.67	0.001857
N	389	Q389H	caG	caT	4	4	AY.72	0.005442
N	389	Q389H	caG	caT	4	4	AY.99	0.004197
N	389	Q389del	CAG	---	4	4	B.1.1	0.000073
N	389	Q389H	caG	caT	4	4	B.1.1.311	0.001433
N	389	Q389H	caG	caT	4	4	B.1.1.349	0.041237
N	389	Q389H	caG	caT	4	4	B.1.1.462	0.034483
N	389	Q389del	CAG	---	4	4	B.1.177	0.000053
N	389	Q389H	caG	caT	4	4	B.1.221	0.000284
N	389	Q389H	caG	caT	4	4	B.1.409	0.003125
N	389	Q389H	caG	caT	4	4	B.1.617.1	0.000516
N	389	Q389H	caG	caT	4	4	B.1.621	0.000354
N	389	Q389H	caG	caT	4	4	B.1.630	0.020942
N	389	Q389Q	caG	caA	4	4	B.40	0.001457
N	389	Q389P	cAg	cCg	4	4	P.1	0.000063
N	389	Q389H	caG	caT	3	3	AY.106	0.001005
N	389	Q389H	caG	caT	3	3	AY.108	0.003308
N	389	Q389H	caG	caT	3	3	AY.120	0.000112
N	389	Q389L	cAg	cTg	3	3	AY.13	0.000483
N	389	Q389H	caG	caT	3	3	AY.16.1	0.00141
N	389	Q389L	cAg	cTg	3	3	AY.20	0.000117
N	389	Q389L	cAg	cTg	2	3	AY.44	0.000012
N	389	Q389L	CAG	TTA	1	3	AY.44	0.000006
N	389	Q389Q	caG	caA	3	3	AY.45	0.000365
N	389	Q389H	caG	caT	2	3	AY.54	0.000191
N	389	Q389H	caG	caC	1	3	AY.54	0.000095
N	389	Q389H	caG	caT	3	3	AY.64	0.001786
N	389	Q389H	caG	caT	3	3	AY.74	0.000347
N	389	Q389L	cAg	cTg	3	3	AY.75.1	0.000541
N	389	Q389Q	caG	caA	3	3	AY.90	0.002053
N	389	Q389H	caG	caT	3	3	B.1.1.216	0.002671
N	389	Q389H	caG	caT	3	3	B.1.1.25	0.001706
N	389	Q389H	caG	caT	3	3	B.1.1.27	0.016949
N	389	Q389H	caG	caC	3	3	B.1.1.317	0.001235
N	389	Q389H	caG	caT	3	3	B.1.1.50	0.002037
N	389	Q389R	cAg	cGg	3	3	B.1.160	0.000094
N	389	Q389del	CAG	---	3	3	B.1.2	0.000026
N	389	Q389H	caG	caT	3	3	B.1.229	0.029126
N	389	Q389H	caG	caT	3	3	B.1.36	0.000438
N	389	Q389H	caG	caT	3	3	B.1.36.29	0.001552
N	389	Q389Q	caG	caA	3	3	B.1.427	0.000151
N	389	Q389H	caG	caT	3	3	B.1.507	0.033708
N	389	Q389Q	caG	caA	3	3	B.1.596	0.000261
N	389	Q389H	caG	caT	2	3	B.1.596	0.000174
N	389	Q389H	caG	caC	1	3	B.1.596	0.000087
N	389	Q389Q	caG	caA	3	3	B.1.617.1	0.000387
N	389	Q389H	caG	caT	3	3	B.1.637	0.000219
N	389	Q389del	CAG	---	3	3	P.1	0.000047
N	389	Q389H	caG	caT	3	3	P.1.7	0.000958
N	389	Q389del1	Cag	-ag	2	2		0.111111
N	389	Q389Q	caG	caA	2	2		0.111111
N	389	Q389del	CAG	---	2	2		0.111111
N	389	Q389X	CaG	TaA	2	2		0.111111
N	389	Q389H	caG	caT	2	2	A.2.5	0.000998
N	389	Q389H	caG	caT	2	2	A.2.5.2	0.003145
N	389	Q389Q	caG	caA	2	2	AY.100	0.000092
N	389	Q389H	caG	caT	2	2	AY.109	0.001479
N	389	Q389H	caG	caT	2	2	AY.16	0.000759
N	389	Q389del	CAG	---	2	2	AY.23	0.000139
N	389	Q389R	cAg	cGg	2	2	AY.23	0.000139
N	389	Q389E	Cag	Gag	2	2	AY.3	0.00002
N	389	Q389H	caG	caT	2	2	AY.32	0.001065
N	389	Q389H	caG	caT	2	2	AY.34	0.000194
N	389	Q389Q	caG	caA	2	2	AY.37	0.000632
N	389	Q389L	cAg	cTg	2	2	AY.39	0.000049
N	389	Q389Q	caG	caA	2	2	AY.39.1	0.000079
N	389	Q389Q	caG	caA	2	2	AY.42	0.00008
N	389	Q389R	cAg	cGg	2	2	AY.43	0.000009
N	389	Q389del	CAG	---	2	2	AY.44	0.000012
N	389	Q389H	caG	caT	2	2	AY.46.4	0.000329
N	389	Q389H	caG	caT	2	2	AY.46.6	0.000144
N	389	Q389H	caG	caT	2	2	AY.48	0.00093
N	389	Q389H	caG	caT	2	2	AY.5.4	0.000553
N	389	Q389H	caG	caT	2	2	AY.55	0.001835
N	389	Q389L	cAg	cTg	2	2	AY.55	0.001835
N	389	Q389L	cAg	cTg	2	2	AY.57	0.001312
N	389	Q389H	caG	caT	2	2	AY.65	0.001066
N	389	Q389Q	caG	caA	2	2	AY.75	0.000112
N	389	Q389H	caG	caC	2	2	AY.85	0.000854
N	389	Q389H	caG	caT	2	2	B	0.000256
N	389	Q389R	cAg	cGg	2	2	B.1	0.000018
N	389	Q389L	cAg	cTg	2	2	B.1.1	0.000036
N	389	Q389H	caG	caT	2	2	B.1.1.10	0.00223
N	389	Q389H	caG	caT	2	2	B.1.1.163	0.015267
N	389	Q389H	caG	caT	2	2	B.1.1.168	0.052632
N	389	Q389Q	caG	caA	2	2	B.1.1.170	0.002494
N	389	Q389H	caG	caT	2	2	B.1.1.196	0.011429
N	389	Q389H	caG	caT	2	2	B.1.1.222	0.000408
N	389	Q389H	caG	caT	2	2	B.1.1.243	0.008163
N	389	Q389H	caG	caT	2	2	B.1.1.326	0.003521
N	389	Q389H	caG	caT	2	2	B.1.1.347	0.036364
N	389	Q389Q	caG	caA	2	2	B.1.1.354	0.008772
N	389	Q389Q	caG	caA	2	2	B.1.1.377	0.002762
N	389	Q389H	caG	caT	2	2	B.1.1.389	0.012121
N	389	Q389H	caG	caT	2	2	B.1.1.398	0.006452
N	389	Q389H	caG	caT	2	2	B.1.1.409	0.005666
N	389	Q389del1	caG	ca-	2	2	B.1.1.519	0.000079
N	389	Q389del1	Cag	-ag	2	2	B.1.1.7	0.000002
N	389	Q389P	cAg	cCg	2	2	B.1.1.7	0.000002
N	389	Q389X	Cag	Tag	2	2	B.1.1.7	0.000002
N	389	Q389L	cAg	cTg	2	2	B.1.177	0.000026
N	389	Q389R	cAg	cGg	2	2	B.1.177	0.000026
N	389	Q389X	Cag	Tag	2	2	B.1.2	0.000018
N	389	Q389R	cAg	cGg	2	2	B.1.2	0.000018
N	389	Q389Q	caG	caA	2	2	B.1.214.2	0.001199
N	389	Q389H	caG	caT	2	2	B.1.351.3	0.001753
N	389	Q389H	caG	caC	1	2	B.1.400	0.000429
N	389	Q389H	caG	caT	1	2	B.1.400	0.000429
N	389	Q389L	cAg	cTg	2	2	B.1.429	0.000047
N	389	Q389H	caG	caT	2	2	B.1.517	0.000854
N	389	Q389del	CAG	---	2	2	B.1.526	0.000047
N	389	Q389H	caG	caT	2	2	B.1.564	0.000852
N	389	Q389H	caG	caT	2	2	B.1.612	0.005305
N	389	Q389Q	caG	caA	2	2	B.1.621	0.000177
N	389	Q389del	CAG	---	2	2	B.1.621.1	0.001012
N	389	Q389H	caG	caT	2	2	C.36.3	0.001134
N	389	Q389H	caG	caT	2	2	C.37	0.000232
N	389	Q389H	caG	caC	1	2	D.2	0.000075
N	389	Q389H	caG	caT	1	2	D.2	0.000075
N	389	Q389del	CAG	---	2	2	P.1.14	0.000096
N	389	Q389H	caG	caT	2	2	Q.4	0.00091
N	389	Q389Q	caG	caA	2	2	Q.8	0.00033
N	389	Q389P	cAg	cCg	1	1		0.055556
N	389	Q389T	CAg	ACg	1	1		0.055556
N	389	Q389K	Cag	Aag	1	1	A	0.000387
N	389	Q389H	caG	caT	1	1	A	0.000387
N	389	Q389Q	caG	caA	1	1	A	0.000387
N	389	Q389L	cAg	cTg	1	1	A.2.5.2	0.001572
N	389	Q389H	caG	caT	1	1	A.27	0.001656
N	389	Q389H	caG	caT	1	1	A.5	0.001923
N	389	Q389R	cAg	cGg	1	1	AE.1	0.011364
N	389	Q389T	CAg	ACg	1	1	All	0
N	389	Q389K	CaG	AaA	1	1	AU.1	0.001266
N	389	Q389H	caG	caT	1	1	AU.2	0.002421
N	389	Q389X	Cag	Tag	1	1	AU.3	0.00211
N	389	Q389del	CAG	---	1	1	AY.100	0.000046
N	389	Q389del	CAG	---	1	1	AY.101	0.00049
N	389	Q389del	CAG	---	1	1	AY.102	0.000027
N	389	Q389X	Cag	Tag	1	1	AY.102	0.000027
N	389	Q389L	cAg	cTg	1	1	AY.102	0.000027
N	389	Q389E	Cag	Gag	1	1	AY.103	0.000006
N	389	Q389L	cAg	cTg	1	1	AY.103	0.000006
N	389	Q389H	caG	caT	1	1	AY.105	0.000643
N	389	Q389L	cAG	cTT	1	1	AY.105	0.000643
N	389	Q389Q	caG	caA	1	1	AY.110	0.000113
N	389	Q389Q	caG	caA	1	1	AY.114	0.000231
N	389	Q389del	CAG	---	1	1	AY.114	0.000231
N	389	Q389L	cAg	cTg	1	1	AY.116	0.000287
N	389	Q389L	cAg	cTg	1	1	AY.119	0.000035
N	389	Q389Q	caG	caA	1	1	AY.119	0.000035
N	389	Q389H	caG	caT	1	1	AY.120.1	0.000321
N	389	Q389del1	caG	ca-	1	1	AY.121	0.000135
N	389	Q389H	caG	caT	1	1	AY.14	0.000088
N	389	Q389Q	caG	caA	1	1	AY.14	0.000088
N	389	Q389L	cAg	cTg	1	1	AY.16.1	0.00047
N	389	Q389Q	caG	caA	1	1	AY.23	0.00007
N	389	Q389L	cAg	cTg	1	1	AY.23	0.00007
N	389	Q389K	Cag	Aag	1	1	AY.25	0.000006
N	389	Q389R	cAg	cGg	1	1	AY.25	0.000006
N	389	Q389Q	caG	caA	1	1	AY.26	0.000028
N	389	Q389H	caG	caT	1	1	AY.27	0.000065
N	389	Q389L	cAg	cTg	1	1	AY.29	0.000016
N	389	Q389R	cAg	cGg	1	1	AY.29	0.000016
N	389	Q389E	Cag	Gag	1	1	AY.29	0.000016
N	389	Q389del	CAG	---	1	1	AY.29.1	0.000221
N	389	Q389R	cAg	cGg	1	1	AY.3	0.00001
N	389	Q389H	caG	caT	1	1	AY.30	0.000396
N	389	Q389del	CAG	---	1	1	AY.31	0.018519
N	389	Q389Q	caG	caA	1	1	AY.32	0.000532
N	389	Q389del	CAG	---	1	1	AY.33	0.000067
N	389	Q389H	caG	caT	1	1	AY.37	0.000316
N	389	Q389Q	caG	caA	1	1	AY.38	0.000499
N	389	Q389K	Cag	Aag	1	1	AY.4	0.000002
N	389	Q389R	cAg	cGg	1	1	AY.4	0.000002
N	389	Q389H	caG	caT	1	1	AY.40	0.000964
N	389	Q389H	caG	caT	1	1	AY.41	0.000294
N	389	Q389X	Cag	Tag	1	1	AY.44	0.000006
N	389	Q389L	cAg	cTg	1	1	AY.46	0.000104
N	389	Q389H	caG	caT	1	1	AY.46.5	0.000198
N	389	Q389Q	caG	caA	1	1	AY.47	0.000031
N	389	Q389del	CAG	---	1	1	AY.47	0.000031
N	389	Q389Q	caG	caA	1	1	AY.5.4	0.000277
N	389	Q389Q	caG	caA	1	1	AY.55	0.000917
N	389	Q389Q	caG	caA	1	1	AY.58	0.000907
N	389	Q389Q	caG	caA	1	1	AY.60	0.000938
N	389	Q389del	CAG	---	1	1	AY.62	0.000436
N	389	Q389Q	caG	caA	1	1	AY.67	0.000464
N	389	Q389E	Cag	Gag	1	1	AY.67	0.000464
N	389	Q389Q	caG	caA	1	1	AY.69	0.000187
N	389	Q389H	caG	caT	1	1	AY.69	0.000187
N	389	Q389H	caG	caT	1	1	AY.7.2	0.000559
N	389	Q389Q	caG	caA	1	1	AY.71	0.000475
N	389	Q389L	cAg	cTg	1	1	AY.71	0.000475
N	389	Q389L	cAg	cTg	1	1	AY.75	0.000056
N	389	Q389Q	caG	caA	1	1	AY.75.1	0.00018
N	389	Q389H	caG	caT	1	1	AY.79	0.001211
N	389	Q389H	caG	caT	1	1	AY.80	0.001129
N	389	Q389del	CAG	---	1	1	AY.84	0.000437
N	389	Q389H	caG	caT	1	1	AY.84	0.000437
N	389	Q389Q	caG	caA	1	1	AY.9	0.000068
N	389	Q389Q	caG	caA	1	1	AY.9.2	0.000037
N	389	Q389H	caG	caC	1	1	AY.91	0.00073
N	389	Q389H	caG	caT	1	1	AY.99.1	0.001553
N	389	Q389H	caG	caT	1	1	AY.99.2	0.000092
N	389	Q389Q	caG	caA	1	1	B	0.000128
N	389	Q389del1	caG	ca-	1	1	B.1	0.000009
N	389	Q389X	Cag	Tag	1	1	B.1	0.000009
N	389	Q389K	Cag	Aag	1	1	B.1.1	0.000018
N	389	Q389del	CAG	---	1	1	B.1.1.139	0.022727
N	389	Q389Q	caG	caA	1	1	B.1.1.161	0.003534
N	389	Q389H	caG	caT	1	1	B.1.1.172	0.018182
N	389	Q389H	caG	caT	1	1	B.1.1.198	0.001468
N	389	Q389H	caG	caT	1	1	B.1.1.214	0.000055
N	389	Q389Q	caG	caA	1	1	B.1.1.216	0.00089
N	389	Q389Q	caG	caA	1	1	B.1.1.219	0.005
N	389	Q389H	caG	caT	1	1	B.1.1.221	0.010101
N	389	Q389del	CAG	---	1	1	B.1.1.236	0.006897
N	389	Q389K	CaG	AaA	1	1	B.1.1.27	0.00565
N	389	Q389L	cAg	cTg	1	1	B.1.1.282	0.011628
N	389	Q389del	CAG	---	1	1	B.1.1.284	0.000107
N	389	Q389L	cAg	cTg	1	1	B.1.1.284	0.000107
N	389	Q389Q	caG	caA	1	1	B.1.1.291	0.000742
N	389	Q389H	caG	caT	1	1	B.1.1.294	0.001266
N	389	Q389H	caG	caT	1	1	B.1.1.306	0.000438
N	389	Q389del	CAG	---	1	1	B.1.1.318	0.000302
N	389	Q389L	cAg	cTg	1	1	B.1.1.326	0.001761
N	389	Q389H	caG	caT	1	1	B.1.1.337	0.003597
N	389	Q389H	caG	caT	1	1	B.1.1.348	0.000796
N	389	Q389H	caG	caT	1	1	B.1.1.368	0.003086
N	389	Q389del	CAG	---	1	1	B.1.1.37	0.000193
N	389	Q389del	CAG	---	1	1	B.1.1.372	0.000689
N	389	Q389H	caG	caT	1	1	B.1.1.374	0.002375
N	389	Q389X	Cag	Tag	1	1	B.1.1.39	0.00051
N	389	Q389Q	caG	caA	1	1	B.1.1.39	0.00051
N	389	Q389H	caG	caT	1	1	B.1.1.397	0.002252
N	389	Q389H	caG	caC	1	1	B.1.1.413	0.006897
N	389	Q389H	caG	caC	1	1	B.1.1.416	0.000905
N	389	Q389H	caG	caT	1	1	B.1.1.432	0.001266
N	389	Q389H	caG	caT	1	1	B.1.1.46	0.004367
N	389	Q389Q	caG	caA	1	1	B.1.1.48	0.002874
N	389	Q389H	caG	caT	1	1	B.1.1.518	0.006329
N	389	Q389H	caG	caT	1	1	B.1.1.521	0.005348
N	389	Q389Q	caG	caA	1	1	B.1.1.58	0.005376
N	389	Q389R	cAg	cGg	1	1	B.1.1.70	0.000341
N	389	Q389Q	caG	caA	1	1	B.1.1.70	0.000341
N	389	Q389Q	caG	caA	1	1	B.1.1.72	0.030303
N	389	Q389Q	caG	caA	1	1	B.1.1.8	0.003584
N	389	Q389L	cAg	cTg	1	1	B.1.126	0.001276
N	389	Q389L	cAg	cTg	1	1	B.1.157	0.002985
N	389	Q389Q	caG	caA	1	1	B.1.160	0.000031
N	389	Q389L	cAg	cTg	1	1	B.1.160	0.000031
N	389	Q389del	CAG	---	1	1	B.1.160.16	0.000929
N	389	Q389H	caG	caT	1	1	B.1.160.7	0.002079
N	389	Q389X	Cag	Tag	1	1	B.1.160.8	0.001289
N	389	Q389H	caG	caT	1	1	B.1.160.9	0.007194
N	389	Q389del	CAG	---	1	1	B.1.162	0.005025
N	389	Q389H	caG	caT	1	1	B.1.177.17	0.000821
N	389	Q389H	caG	caT	1	1	B.1.177.21	0.000076
N	389	Q389H	caG	caT	1	1	B.1.177.23	0.003236
N	389	Q389H	caG	caT	1	1	B.1.177.31	0.011494
N	389	Q389H	caG	caT	1	1	B.1.177.44	0.000519
N	389	Q389Q	caG	caA	1	1	B.1.177.45	0.000381
N	389	Q389H	caG	caT	1	1	B.1.177.56	0.000668
N	389	Q389R	cAg	cGg	1	1	B.1.177.57	0.000281
N	389	Q389del	CAG	---	1	1	B.1.177.62	0.001192
N	389	Q389H	caG	caT	1	1	B.1.177.66	0.041667
N	389	Q389K	Cag	Aag	1	1	B.1.177.72	0.00339
N	389	Q389L	cAg	cTg	1	1	B.1.177.72	0.00339
N	389	Q389H	caG	caT	1	1	B.1.177.72	0.00339
N	389	Q389H	caG	caT	1	1	B.1.177.73	0.000566
N	389	Q389L	cAg	cTg	1	1	B.1.177.73	0.000566
N	389	Q389X	Cag	Tag	1	1	B.1.177.77	0.000726
N	389	Q389H	caG	caT	1	1	B.1.177.80	0.001912
N	389	Q389E	Cag	Gag	1	1	B.1.177.81	0.000189
N	389	Q389E	Cag	Gag	1	1	B.1.2	0.000009
N	389	Q389del1	Cag	-ag	1	1	B.1.221.3	0.000833
N	389	Q389del	CAG	---	1	1	B.1.234	0.000132
N	389	Q389L	cAg	cTg	1	1	B.1.234	0.000132
N	389	Q389K	Cag	Aag	1	1	B.1.242	0.018868
N	389	Q389Q	caG	caA	1	1	B.1.243	0.00007
N	389	Q389H	caG	caT	1	1	B.1.258.11	0.000396
N	389	Q389H	caG	caT	1	1	B.1.319	0.003049
N	389	Q389H	caG	caT	1	1	B.1.320	0.001245
N	389	Q389H	caG	caT	1	1	B.1.329	0.000608
N	389	Q389L	cAg	cTg	1	1	B.1.351	0.00003
N	389	Q389Q	caG	caA	1	1	B.1.351	0.00003
N	389	Q389L	cAg	cTg	1	1	B.1.36.1	0.00114
N	389	Q389E	Cag	Gag	1	1	B.1.36.10	0.004785
N	389	Q389H	caG	caT	1	1	B.1.36.18	0.00042
N	389	Q389H	caG	caT	1	1	B.1.36.31	0.001751
N	389	Q389L	cAg	cTg	1	1	B.1.36.35	0.002604
N	389	Q389Q	caG	caA	1	1	B.1.36.36	0.000602
N	389	Q389H	caG	caT	1	1	B.1.36.8	0.001
N	389	Q389H	caG	caT	1	1	B.1.404	0.001302
N	389	Q389del	CAG	---	1	1	B.1.415	0.014286
N	389	Q389H	caG	caT	1	1	B.1.416.1	0.001563
N	389	Q389del	CAG	---	1	1	B.1.416.1	0.001563
N	389	Q389H	caG	caC	1	1	B.1.428	0.00102
N	389	Q389K	CaG	AaA	1	1	B.1.429	0.000024
N	389	Q389H	caG	caT	1	1	B.1.438.1	0.000107
N	389	Q389del	CAG	---	1	1	B.1.438.1	0.000107
N	389	Q389L	cAg	cTg	1	1	B.1.525	0.000113
N	389	Q389H	caG	caT	1	1	B.1.533	0.009615
N	389	Q389H	caG	caC	1	1	B.1.550	0.013699
N	389	Q389H	caG	caT	1	1	B.1.582	0.000491
N	389	Q389X	Cag	Tag	1	1	B.1.582	0.000491
N	389	Q389del	CAG	---	1	1	B.1.588	0.00091
N	389	Q389H	caG	caT	1	1	B.1.590	0.004545
N	389	Q389K	CaG	AaA	1	1	B.1.617.1	0.000129
N	389	Q389K	Cag	Aag	1	1	B.1.617.2	0.000004
N	389	Q389R	cAg	cGg	1	1	B.1.617.2	0.000004
N	389	Q389L	cAg	cTg	1	1	B.1.619	0.000871
N	389	Q389del1	caG	ca-	1	1	B.1.620	0.000946
N	389	Q389H	caG	caT	1	1	B.1.628	0.000352
N	389	Q389del	CAG	---	1	1	B.1.630	0.005236
N	389	Q389H	caG	caT	1	1	B.39	0.002331
N	389	Q389H	caG	caT	1	1	B.58	0.010204
N	389	Q389H	caG	caT	1	1	C.1.2	0.004255
N	389	Q389H	caG	caT	1	1	C.17	0.055556
N	389	Q389L	cAg	cTg	1	1	C.36	0.000911
N	389	Q389L	cAg	cTg	1	1	D.2	0.000075
N	389	Q389L	cAg	cTg	1	1	P.1	0.000016
N	389	Q389R	cAg	cGg	1	1	P.1	0.000016
N	389	Q389Q	caG	caA	1	1	P.1	0.000016
N	389	Q389Q	caG	caA	1	1	P.1.12	0.000484
N	389	Q389Q	caG	caA	1	1	P.1.15	0.000232
N	389	Q389L	cAg	cTg	1	1	P.2	0.000187
N	389	Q389H	caG	caT	1	1	Q.1	0.000126
N	389	Q389Y	CaG	TaT	1	1	Q.3	0.000145
N	389	Q389Q	caG	caA	1	1	Q.4	0.000455
N	389	Q389R	cAg	cGg	1	1	Q.8	0.000165
N	389	Q389H	caG	caT	1	1	R.1	0.00009
N	389	Q389Q	caG	caA	1	1	W.4	0.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.