CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 385

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	385	R385K		nonsyn	aGa	aAa	18584	18577	0.999623	29426-29428
N	385	R385K		nonsyn	aGA	aAG	18584	7	0.000376668	29426-29428
N	385	R385I		nonsyn	aGa	aTa	1285	1285	1	29426-29428
N	385	R385R		syn	Aga	Cga	699	457	0.653791	29426-29428
N	385	R385R		syn	agA	agG	699	239	0.341917	29426-29428
N	385	R385R		syn	AgA	CgT	699	3	0.00429185	29426-29428
N	385	R385T		nonsyn	aGa	aCa	95	95	1	29426-29428
N	385	R385G		nonsyn	Aga	Gga	70	70	1	29426-29428
N	385	R385M		nonsyn	aGA	aTG	63	63	1	29426-29428
N	385	R385del		del	AGA	---	58	58	1	29426-29428
N	385	R385S		nonsyn	agA	agC	41	24	0.585366	29426-29428
N	385	R385S		nonsyn	agA	agT	41	17	0.414634	29426-29428
N	385	R385X		nonsyn	Aga	Tga	11	6	0.545455	29426-29428
N	385	R385X		nonsyn	AGa	TAa	11	5	0.454545	29426-29428
N	385	R385del1		del	Aga	-ga	5	3	0.6	29426-29428
N	385	R385del1		del	aGa	a-a	5	1	0.2	29426-29428
N	385	R385del1		del	AgA	Ng-	5	1	0.2	29426-29428
N	385	R385E		nonsyn	AGa	GAa	3	2	0.666667	29426-29428
N	385	R385E		nonsyn	AGA	GAG	3	1	0.333333	29426-29428
N	385	R385L		nonsyn	AGA	CTC	2	2	1	29426-29428
N	385	R385Q		nonsyn	AGa	CAa	2	2	1	29426-29428
N	385	R385del2		del	aGA	a--	2	1	0.5	29426-29428
N	385	R385del2		del	AGa	--a	2	1	0.5	29426-29428

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	385	R385K	aGa	aAa	18577	18584	All	0.003553
N	385	R385K	aGA	aAG	7	18584	All	0.000001
N	385	R385K	aGa	aAa	10576	10581	B.1.617.2	0.039823
N	385	R385K	aGA	aAG	5	10581	B.1.617.2	0.000019
N	385	R385K	aGa	aAa	3224	3224	B.1.160	0.100549
N	385	R385K	aGa	aAa	2426	2426	AY.30	0.960032
N	385	R385I	aGa	aTa	1285	1285	All	0.000246
N	385	R385K	aGa	aAa	758	758	AY.40	0.730955
N	385	R385R	Aga	Cga	457	699	All	0.000087
N	385	R385R	agA	agG	239	699	All	0.000046
N	385	R385R	AgA	CgT	3	699	All	0.000001
N	385	R385K	aGa	aAa	206	206	B.1.160.23	0.995169
N	385	R385I	aGa	aTa	197	197	AY.4	0.000307
N	385	R385I	aGa	aTa	152	152	B.1.617.2	0.000572
N	385	R385I	aGa	aTa	141	141	B.1.1.7	0.000126
N	385	R385K	aGa	aAa	140	140	B.1.160.22	0.945946
N	385	R385R	Aga	Cga	127	127	AY.102	0.003367
N	385	R385T	aGa	aCa	95	95	All	0.000018
N	385	R385K	aGa	aAa	89	89	AY.43	0.000394
N	385	R385K	aGa	aAa	88	88	B.1	0.000806
N	385	R385R	Aga	Cga	70	85	B.1.617.2	0.000264
N	385	R385R	agA	agG	15	85	B.1.617.2	0.000056
N	385	R385I	aGa	aTa	76	76	AY.43	0.000337
N	385	R385K	aGa	aAa	73	73	AY.16.1	0.034305
N	385	R385K	aGa	aAa	72	72	AY.67	0.033426
N	385	R385G	Aga	Gga	70	70	All	0.000013
N	385	R385R	Aga	Cga	62	69	AY.44	0.000377
N	385	R385R	agA	agG	7	69	AY.44	0.000043
N	385	R385K	aGa	aAa	66	66	B.1.1.7	0.000059
N	385	R385K	aGa	aAa	64	64	AY.46.5	0.012698
N	385	R385M	aGA	aTG	63	63	All	0.000012
N	385	R385I	aGa	aTa	59	59	AY.103	0.000366
N	385	R385del	AGA	---	58	58	All	0.000011
N	385	R385I	aGa	aTa	56	56	AY.47	0.001742
N	385	R385K	aGa	aAa	53	54	AY.31	0.981481
N	385	R385K	aGA	aAG	1	54	AY.31	0.018519
N	385	R385R	Aga	Cga	54	54	AY.85	0.023067
N	385	R385R	agA	agG	32	52	B.1.1.7	0.000029
N	385	R385R	Aga	Cga	18	52	B.1.1.7	0.000016
N	385	R385R	AgA	CgT	2	52	B.1.1.7	0.000002
N	385	R385I	aGa	aTa	44	44	AY.44	0.000268
N	385	R385S	agA	agC	24	41	All	0.000005
N	385	R385S	agA	agT	17	41	All	0.000003
N	385	R385R	agA	agG	33	40	B.1.2	0.000291
N	385	R385R	Aga	Cga	7	40	B.1.2	0.000062
N	385	R385K	aGa	aAa	38	38	AY.13	0.006117
N	385	R385I	aGa	aTa	36	36	AY.25	0.000217
N	385	R385K	aGa	aAa	34	34	AY.56	0.054575
N	385	R385I	aGa	aTa	28	28	C.37	0.00325
N	385	R385K	aGa	aAa	25	25	AY.75	0.001401
N	385	R385K	aGa	aAa	24	24	AY.44	0.000146
N	385	R385I	aGa	aTa	23	23	B.1	0.000211
N	385	R385I	aGa	aTa	23	23	B.1.177	0.000303
N	385	R385K	aGa	aAa	22	22	AY.59	0.011653
N	385	R385K	aGa	aAa	22	22	AY.65	0.011727
N	385	R385R	agA	agG	20	21	B.1.637	0.001461
N	385	R385R	Aga	Cga	1	21	B.1.637	0.000073
N	385	R385K	aGa	aAa	20	20	AY.54	0.001907
N	385	R385I	aGa	aTa	20	20	B.1.1	0.000363
N	385	R385K	aGa	aAa	19	19	AY.39	0.00047
N	385	R385I	aGa	aTa	19	19	AY.68	0.005201
N	385	R385I	aGa	aTa	18	18	AY.23	0.001255
N	385	R385R	Aga	Cga	18	18	AY.84	0.007874
N	385	R385K	aGa	aAa	18	18	AY.9.2	0.000661
N	385	R385R	agA	agG	12	17	AY.4	0.000019
N	385	R385R	Aga	Cga	5	17	AY.4	0.000008
N	385	R385R	agA	agG	16	16	AY.23	0.001116
N	385	R385K	aGa	aAa	16	16	AY.26	0.000453
N	385	R385K	aGa	aAa	16	16	B.1.214	0.058608
N	385	R385I	aGa	aTa	15	15	AY.102	0.000398
N	385	R385M	aGA	aTG	15	15	AY.23	0.001046
N	385	R385S	agA	agT	9	15	AY.4	0.000014
N	385	R385S	agA	agC	6	15	AY.4	0.000009
N	385	R385I	aGa	aTa	15	15	B.1.2	0.000132
N	385	R385T	aGa	aCa	15	15	B.1.2	0.000132
N	385	R385R	Aga	Cga	15	15	B.1.429	0.000353
N	385	R385R	Aga	Cga	11	14	AY.103	0.000068
N	385	R385R	agA	agG	3	14	AY.103	0.000019
N	385	R385K	aGa	aAa	14	14	AY.75.1	0.002524
N	385	R385G	Aga	Gga	14	14	B.1.1.7	0.000013
N	385	R385K	aGa	aAa	13	13	AY.117	0.001099
N	385	R385K	aGa	aAa	13	13	AY.16	0.004935
N	385	R385K	aGa	aAa	13	13	AY.41	0.003821
N	385	R385K	aGa	aAa	13	13	AY.58	0.011797
N	385	R385K	aGa	aAa	12	12	AY.37	0.003793
N	385	R385R	Aga	Cga	11	12	AY.4.2	0.000239
N	385	R385R	agA	agG	1	12	AY.4.2	0.000022
N	385	R385K	aGa	aAa	12	12	AY.47	0.000373
N	385	R385K	aGa	aAa	12	12	AY.62	0.005229
N	385	R385K	aGa	aAa	12	12	AY.85	0.005126
N	385	R385I	aGa	aTa	12	12	P.2	0.00224
N	385	R385X	Aga	Tga	6	11	All	0.000001
N	385	R385X	AGa	TAa	5	11	All	0.000001
N	385	R385K	aGa	aAa	11	11	AY.21	0.020873
N	385	R385S	agA	agC	11	11	AY.45	0.001339
N	385	R385K	aGa	aAa	11	11	AY.45	0.001339
N	385	R385K	aGa	aAa	11	11	AY.68	0.003011
N	385	R385R	agA	agG	8	10	AY.25	0.000048
N	385	R385R	Aga	Cga	2	10	AY.25	0.000012
N	385	R385R	Aga	Cga	10	10	AY.46	0.001041
N	385	R385K	aGa	aAa	10	10	AY.61	0.001048
N	385	R385K	aGa	aAa	10	10	AY.86	0.008299
N	385	R385I	aGa	aTa	10	10	B.1.1.231	0.03096
N	385	R385T	aGa	aCa	10	10	B.1.1.7	0.000009
N	385	R385K	aGa	aAa	10	10	B.1.617.1	0.00129
N	385	R385I	aGa	aTa	10	10	P.1	0.000158
N	385	R385K	aGa	aAa	9	9	AY.4	0.000014
N	385	R385K	aGa	aAa	9	9	AY.42	0.000362
N	385	R385R	agA	agG	5	9	AY.43	0.000022
N	385	R385R	Aga	Cga	4	9	AY.43	0.000018
N	385	R385I	aGa	aTa	9	9	AY.5	0.000186
N	385	R385I	aGa	aTa	9	9	B.1.1.317	0.003705
N	385	R385I	aGa	aTa	9	9	B.1.36.29	0.004656
N	385	R385K	aGa	aAa	9	9	B.1.497	0.002833
N	385	R385I	aGa	aTa	9	9	B.1.526	0.000212
N	385	R385M	aGA	aTG	9	9	B.1.617.2	0.000034
N	385	R385R	agA	agG	9	9	B.6.6	0.008
N	385	R385K	aGa	aAa	9	9	P.1	0.000142
N	385	R385I	aGa	aTa	8	8	AY.119	0.000282
N	385	R385K	aGa	aAa	8	8	AY.33	0.000534
N	385	R385I	aGa	aTa	8	8	AY.4.2	0.000174
N	385	R385I	aGa	aTa	8	8	AY.54	0.000763
N	385	R385K	aGa	aAa	8	8	B	0.001022
N	385	R385R	Aga	Cga	8	8	P.1.14	0.000382
N	385	R385K	aGa	aAa	7	7	AY.103	0.000043
N	385	R385K	aGa	aAa	7	7	AY.24	0.003017
N	385	R385K	aGa	aAa	7	7	AY.25	0.000042
N	385	R385I	aGa	aTa	7	7	AY.3	0.00007
N	385	R385K	aGa	aAa	7	7	AY.39.1	0.000277
N	385	R385G	Aga	Gga	7	7	AY.4	0.000011
N	385	R385K	aGa	aAa	7	7	AY.48	0.003256
N	385	R385K	aGa	aAa	7	7	AY.52	0.0057
N	385	R385K	aGa	aAa	7	7	AY.53	0.002013
N	385	R385K	aGa	aAa	7	7	AY.64	0.004167
N	385	R385K	aGa	aAa	7	7	B.1.160.30	0.020833
N	385	R385R	agA	agG	7	7	B.1.36	0.001021
N	385	R385K	aGa	aAa	7	7	B.1.429	0.000165
N	385	R385I	aGa	aTa	7	7	B.6.6	0.006222
N	385	R385M	aGA	aTG	7	7	B.6.6	0.006222
N	385	R385X	AGa	TAa	4	6		0.222222
N	385	R385X	Aga	Tga	2	6		0.111111
N	385	R385I	aGa	aTa	6	6	AY.100	0.000276
N	385	R385I	aGa	aTa	6	6	AY.23.1	0.002504
N	385	R385I	aGa	aTa	6	6	AY.39	0.000148
N	385	R385K	aGa	aAa	6	6	AY.49	0.019169
N	385	R385K	aGa	aAa	6	6	AY.51	0.005455
N	385	R385K	aGa	aAa	6	6	AY.79	0.007264
N	385	R385K	aGa	aAa	6	6	AY.9	0.000406
N	385	R385R	agA	agG	4	6	B.1	0.000037
N	385	R385R	Aga	Cga	2	6	B.1	0.000018
N	385	R385R	agA	agG	5	6	B.1.1	0.000091
N	385	R385R	AgA	CgT	1	6	B.1.1	0.000018
N	385	R385R	agA	agG	6	6	B.1.1.391	0.051282
N	385	R385I	aGa	aTa	6	6	B.1.110.3	0.00431
N	385	R385I	aGa	aTa	6	6	B.1.596	0.000523
N	385	R385R	agA	agG	5	6	B.1.596	0.000436
N	385	R385R	Aga	Cga	1	6	B.1.596	0.000087
N	385	R385I	aGa	aTa	6	6	B.1.617.1	0.000774
N	385	R385T	aGa	aCa	6	6	B.1.617.2	0.000023
N	385	R385I	aGa	aTa	6	6	B.1.621	0.000531
N	385	R385del	AGA	---	6	6	C.37	0.000696
N	385	R385del1	Aga	-ga	3	5	All	0.000001
N	385	R385del1	AgA	Ng-	1	5	All	0
N	385	R385del1	aGa	a-a	1	5	All	0
N	385	R385K	aGa	aAa	5	5	AY.100	0.00023
N	385	R385I	aGa	aTa	5	5	AY.111	0.000916
N	385	R385T	aGa	aCa	5	5	AY.12	0.00158
N	385	R385K	aGa	aAa	5	5	AY.121	0.000677
N	385	R385K	aGa	aAa	5	5	AY.19	0.005701
N	385	R385R	agA	agG	5	5	AY.23.1	0.002087
N	385	R385M	aGA	aTG	5	5	AY.23.1	0.002087
N	385	R385I	aGa	aTa	5	5	AY.26	0.000142
N	385	R385I	aGa	aTa	5	5	AY.37	0.00158
N	385	R385K	aGa	aAa	5	5	AY.46	0.00052
N	385	R385del	AGA	---	5	5	B.1	0.000046
N	385	R385K	aGa	aAa	5	5	B.1.1	0.000091
N	385	R385M	aGA	aTG	5	5	B.1.1	0.000091
N	385	R385I	aGa	aTa	5	5	B.1.1.214	0.000277
N	385	R385del	AGA	---	5	5	B.1.1.7	0.000004
N	385	R385G	Aga	Gga	5	5	B.1.177	0.000066
N	385	R385K	aGa	aAa	4	4	AY.102	0.000106
N	385	R385G	Aga	Gga	4	4	AY.103	0.000025
N	385	R385K	aGa	aAa	4	4	AY.3	0.00004
N	385	R385I	aGa	aTa	4	4	AY.42	0.000161
N	385	R385I	aGa	aTa	4	4	AY.46.5	0.000794
N	385	R385G	Aga	Gga	4	4	AY.5	0.000083
N	385	R385K	aGa	aAa	4	4	AY.5.4	0.001107
N	385	R385K	aGa	aAa	4	4	AY.70	0.000834
N	385	R385K	aGa	aAa	4	4	AY.77	0.00451
N	385	R385K	aGa	aAa	4	4	AY.78	0.006163
N	385	R385I	aGa	aTa	4	4	AY.99.2	0.000369
N	385	R385K	aGa	aAa	4	4	B.1.160.15	0.019802
N	385	R385R	agA	agG	4	4	B.1.177	0.000053
N	385	R385T	aGa	aCa	4	4	B.1.177	0.000053
N	385	R385K	aGa	aAa	4	4	B.1.596	0.000349
N	385	R385R	agA	agG	4	4	B.1.617.1	0.000516
N	385	R385G	Aga	Gga	4	4	B.1.617.2	0.000015
N	385	R385R	agA	agG	4	4	P.1	0.000063
N	385	R385I	aGa	aTa	4	4	P.1.14	0.000191
N	385	R385E	AGa	GAa	2	3	All	0
N	385	R385E	AGA	GAG	1	3	All	0
N	385	R385T	aGa	aCa	3	3	AY.103	0.000019
N	385	R385K	aGa	aAa	3	3	AY.104	0.005952
N	385	R385K	aGa	aAa	3	3	AY.106	0.001005
N	385	R385I	aGa	aTa	3	3	AY.116.1	0.000934
N	385	R385K	aGa	aAa	3	3	AY.118	0.000188
N	385	R385K	aGa	aAa	3	3	AY.12	0.000948
N	385	R385I	aGa	aTa	3	3	AY.120	0.000112
N	385	R385I	aGa	aTa	3	3	AY.22	0.006276
N	385	R385K	aGa	aAa	3	3	AY.32	0.001597
N	385	R385T	aGa	aCa	3	3	AY.39	0.000074
N	385	R385I	aGa	aTa	3	3	AY.39.1	0.000119
N	385	R385del	AGA	---	3	3	AY.4	0.000005
N	385	R385T	aGa	aCa	3	3	AY.4	0.000005
N	385	R385I	aGa	aTa	3	3	AY.4.4	0.001227
N	385	R385M	aGA	aTG	3	3	AY.43	0.000013
N	385	R385S	agA	agT	2	3	AY.44	0.000012
N	385	R385S	agA	agC	1	3	AY.44	0.000006
N	385	R385I	aGa	aTa	3	3	AY.45	0.000365
N	385	R385R	agA	agG	2	3	AY.5	0.000041
N	385	R385R	Aga	Cga	1	3	AY.5	0.000021
N	385	R385I	aGa	aTa	3	3	AY.5.4	0.00083
N	385	R385K	aGa	aAa	3	3	AY.55	0.002752
N	385	R385K	aGa	aAa	3	3	AY.73	0.001996
N	385	R385K	aGa	aAa	3	3	AY.88	0.002653
N	385	R385T	aGa	aCa	3	3	AY.9.2	0.00011
N	385	R385R	Aga	Cga	3	3	AY.92	0.000862
N	385	R385I	aGa	aTa	3	3	AY.94	0.001328
N	385	R385R	Aga	Cga	3	3	AY.98	0.000237
N	385	R385I	aGa	aTa	3	3	AZ.5	0.010526
N	385	R385M	aGA	aTG	3	3	B.1	0.000027
N	385	R385T	aGa	aCa	3	3	B.1	0.000027
N	385	R385K	aGa	aAa	3	3	B.1.1.519	0.000119
N	385	R385I	aGa	aTa	3	3	B.1.1.63	0.001157
N	385	R385del	AGA	---	3	3	B.1.177	0.00004
N	385	R385R	agA	agG	3	3	B.1.177.17	0.002463
N	385	R385I	aGa	aTa	3	3	B.1.177.43	0.004431
N	385	R385G	Aga	Gga	3	3	B.1.2	0.000026
N	385	R385K	aGa	aAa	3	3	B.1.221	0.000213
N	385	R385I	aGa	aTa	3	3	B.1.351	0.000089
N	385	R385R	agA	agG	3	3	B.1.351	0.000089
N	385	R385I	aGa	aTa	3	3	B.1.36.16	0.004274
N	385	R385I	aGa	aTa	3	3	B.1.429	0.000071
N	385	R385del	AGA	---	3	3	B.1.617.2	0.000011
N	385	R385I	aGa	aTa	3	3	B.39	0.006993
N	385	R385M	aGA	aTG	3	3	B.6	0.00273
N	385	R385R	agA	agG	3	3	B.6	0.00273
N	385	R385I	aGa	aTa	3	3	B.6	0.00273
N	385	R385K	aGa	aAa	3	3	P.1.1	0.000953
N	385	R385I	aGa	aTa	3	3	R.1	0.00027
N	385	R385del	AGA	---	2	2		0.111111
N	385	R385R	Aga	Cga	2	2		0.111111
N	385	R385Q	AGa	CAa	2	2		0.111111
N	385	R385Q	AGa	CAa	2	2	All	0
N	385	R385L	AGA	CTC	2	2	All	0
N	385	R385del2	aGA	a--	1	2	All	0
N	385	R385del2	AGa	--a	1	2	All	0
N	385	R385K	aGa	aAa	2	2	AY.101	0.000981
N	385	R385K	aGa	aAa	2	2	AY.105	0.001286
N	385	R385K	aGa	aAa	2	2	AY.109	0.001479
N	385	R385K	aGa	aAa	2	2	AY.110	0.000225
N	385	R385I	aGa	aTa	2	2	AY.113	0.000285
N	385	R385K	aGa	aAa	2	2	AY.114	0.000462
N	385	R385K	aGa	aAa	2	2	AY.116	0.000574
N	385	R385I	aGa	aTa	2	2	AY.118	0.000125
N	385	R385del	AGA	---	2	2	AY.23	0.000139
N	385	R385K	aGa	aAa	2	2	AY.23	0.000139
N	385	R385del	AGA	---	2	2	AY.25	0.000012
N	385	R385I	aGa	aTa	2	2	AY.29	0.000032
N	385	R385R	Aga	Cga	2	2	AY.29.1	0.000441
N	385	R385R	Aga	Cga	2	2	AY.3	0.00002
N	385	R385I	aGa	aTa	2	2	AY.33	0.000134
N	385	R385I	aGa	aTa	2	2	AY.38	0.000999
N	385	R385R	Aga	Cga	2	2	AY.39	0.000049
N	385	R385S	agA	agC	2	2	AY.43	0.000009
N	385	R385T	aGa	aCa	2	2	AY.43	0.000009
N	385	R385G	Aga	Gga	2	2	AY.44	0.000012
N	385	R385R	agA	agG	2	2	AY.46.6	0.000144
N	385	R385I	aGa	aTa	2	2	AY.51	0.001818
N	385	R385G	Aga	Gga	2	2	AY.55	0.001835
N	385	R385R	Aga	Cga	1	2	AY.6	0.000041
N	385	R385R	agA	agG	1	2	AY.6	0.000041
N	385	R385I	aGa	aTa	2	2	AY.67	0.000929
N	385	R385I	aGa	aTa	2	2	AY.7.1	0.000225
N	385	R385K	aGa	aAa	2	2	AY.71	0.00095
N	385	R385I	aGa	aTa	2	2	AY.75	0.000112
N	385	R385K	aGa	aAa	2	2	AY.87	0.001665
N	385	R385I	aGa	aTa	2	2	AY.9.2	0.000073
N	385	R385I	aGa	aTa	2	2	AY.93	0.000546
N	385	R385R	agA	agG	2	2	B	0.000256
N	385	R385I	aGa	aTa	2	2	B	0.000256
N	385	R385M	aGA	aTG	2	2	B	0.000256
N	385	R385T	aGa	aCa	2	2	B.1.1	0.000036
N	385	R385I	aGa	aTa	2	2	B.1.1.1	0.000653
N	385	R385I	aGa	aTa	2	2	B.1.1.174	0.006757
N	385	R385I	aGa	aTa	2	2	B.1.1.222	0.000408
N	385	R385I	aGa	aTa	2	2	B.1.1.306	0.000877
N	385	R385I	aGa	aTa	2	2	B.1.1.50	0.001358
N	385	R385L	AGA	CTC	2	2	B.1.1.7	0.000002
N	385	R385M	aGA	aTG	2	2	B.1.1.7	0.000002
N	385	R385K	aGa	aAa	2	2	B.1.160.25	0.022222
N	385	R385I	aGa	aTa	2	2	B.1.177.33	0.003289
N	385	R385K	aGa	aAa	2	2	B.1.177.43	0.002954
N	385	R385I	aGa	aTa	2	2	B.1.177.65	0.001331
N	385	R385del	AGA	---	2	2	B.1.2	0.000018
N	385	R385del1	AgA	Ng-	1	2	B.1.2	0.000009
N	385	R385del1	Aga	-ga	1	2	B.1.2	0.000009
N	385	R385R	Aga	Cga	2	2	B.1.221	0.000142
N	385	R385K	aGa	aAa	2	2	B.1.222	0.003384
N	385	R385I	aGa	aTa	2	2	B.1.234	0.000264
N	385	R385T	aGa	aCa	2	2	B.1.240	0.000431
N	385	R385I	aGa	aTa	2	2	B.1.243	0.000139
N	385	R385G	Aga	Gga	2	2	B.1.243	0.000139
N	385	R385I	aGa	aTa	2	2	B.1.249	0.125
N	385	R385K	aGa	aAa	2	2	B.1.258	0.000133
N	385	R385G	Aga	Gga	2	2	B.1.258	0.000133
N	385	R385K	aGa	aAa	2	2	B.1.258.11	0.000793
N	385	R385I	aGa	aTa	2	2	B.1.284	0.026316
N	385	R385T	aGa	aCa	2	2	B.1.329	0.001215
N	385	R385I	aGa	aTa	2	2	B.1.336	0.004878
N	385	R385I	aGa	aTa	2	2	B.1.351.2	0.000605
N	385	R385I	aGa	aTa	2	2	B.1.36	0.000292
N	385	R385I	aGa	aTa	2	2	B.1.36.17	0.000988
N	385	R385K	aGa	aAa	2	2	B.1.39	0.007812
N	385	R385R	agA	agG	2	2	B.1.400	0.000858
N	385	R385T	aGa	aCa	2	2	B.1.429	0.000047
N	385	R385G	Aga	Gga	2	2	B.1.429	0.000047
N	385	R385I	aGa	aTa	2	2	B.1.466.2	0.000782
N	385	R385I	aGa	aTa	2	2	B.1.586	0.021978
N	385	R385S	agA	agC	1	2	B.1.617.2	0.000004
N	385	R385S	agA	agT	1	2	B.1.617.2	0.000004
N	385	R385I	aGa	aTa	2	2	B.40	0.000729
N	385	R385I	aGa	aTa	2	2	D.2	0.00015
N	385	R385T	aGa	aCa	2	2	D.2	0.00015
N	385	R385del	AGA	---	2	2	P.1	0.000032
N	385	R385del	AGA	---	2	2	P.1.14	0.000096
N	385	R385I	aGa	aTa	1	1	A	0.000387
N	385	R385K	aGa	aAa	1	1	A	0.000387
N	385	R385X	Aga	Tga	1	1	A.1	0.000282
N	385	R385R	agA	agG	1	1	A.2.5	0.000499
N	385	R385R	agA	agG	1	1	A.23.1	0.000704
N	385	R385R	Aga	Cga	1	1	A.3	0.002096
N	385	R385K	aGa	aAa	1	1	AH.3	0.003802
N	385	R385K	aGa	aAa	1	1	AY.1	0.000396
N	385	R385K	aGa	aAa	1	1	AY.10	0.00053
N	385	R385R	Aga	Cga	1	1	AY.100	0.000046
N	385	R385del	AGA	---	1	1	AY.101	0.00049
N	385	R385T	aGa	aCa	1	1	AY.102	0.000027
N	385	R385del	AGA	---	1	1	AY.102	0.000027
N	385	R385K	aGa	aAa	1	1	AY.113	0.000142
N	385	R385del	AGA	---	1	1	AY.114	0.000231
N	385	R385I	aGa	aTa	1	1	AY.115	0.005208
N	385	R385I	aGa	aTa	1	1	AY.116	0.000287
N	385	R385G	Aga	Gga	1	1	AY.116	0.000287
N	385	R385G	Aga	Gga	1	1	AY.12	0.000316
N	385	R385K	aGa	aAa	1	1	AY.120.2	0.001285
N	385	R385I	aGa	aTa	1	1	AY.13	0.000161
N	385	R385K	aGa	aAa	1	1	AY.14	0.000088
N	385	R385I	aGa	aTa	1	1	AY.16.1	0.00047
N	385	R385G	Aga	Gga	1	1	AY.20	0.000039
N	385	R385I	aGa	aTa	1	1	AY.20	0.000039
N	385	R385K	aGa	aAa	1	1	AY.20	0.000039
N	385	R385S	agA	agT	1	1	AY.23	0.00007
N	385	R385T	aGa	aCa	1	1	AY.23	0.00007
N	385	R385T	aGa	aCa	1	1	AY.25	0.000006
N	385	R385M	aGA	aTG	1	1	AY.25	0.000006
N	385	R385T	aGa	aCa	1	1	AY.26	0.000028
N	385	R385K	aGa	aAa	1	1	AY.27	0.000065
N	385	R385G	Aga	Gga	1	1	AY.29	0.000016
N	385	R385R	Aga	Cga	1	1	AY.29	0.000016
N	385	R385K	aGa	aAa	1	1	AY.29	0.000016
N	385	R385I	aGa	aTa	1	1	AY.3.1	0.000085
N	385	R385del	AGA	---	1	1	AY.31	0.018519
N	385	R385I	aGa	aTa	1	1	AY.34	0.000097
N	385	R385I	aGa	aTa	1	1	AY.36	0.000148
N	385	R385G	Aga	Gga	1	1	AY.36	0.000148
N	385	R385K	aGa	aAa	1	1	AY.38	0.000499
N	385	R385S	agA	agT	1	1	AY.39.1	0.00004
N	385	R385G	Aga	Gga	1	1	AY.39.1	0.00004
N	385	R385I	aGa	aTa	1	1	AY.4.5	0.000107
N	385	R385T	aGa	aCa	1	1	AY.42	0.00004
N	385	R385X	Aga	Tga	1	1	AY.44	0.000006
N	385	R385E	AGa	GAa	1	1	AY.44	0.000006
N	385	R385R	Aga	Cga	1	1	AY.45	0.000122
N	385	R385I	aGa	aTa	1	1	AY.46	0.000104
N	385	R385T	aGa	aCa	1	1	AY.46.1	0.001027
N	385	R385K	aGa	aAa	1	1	AY.46.2	0.000635
N	385	R385K	aGa	aAa	1	1	AY.46.4	0.000165
N	385	R385S	agA	agT	1	1	AY.46.4	0.000165
N	385	R385I	aGa	aTa	1	1	AY.46.6	0.000072
N	385	R385T	aGa	aCa	1	1	AY.5	0.000021
N	385	R385K	aGa	aAa	1	1	AY.50	0.000799
N	385	R385I	aGa	aTa	1	1	AY.53	0.000288
N	385	R385G	Aga	Gga	1	1	AY.57	0.000656
N	385	R385M	aGA	aTG	1	1	AY.59	0.00053
N	385	R385I	aGa	aTa	1	1	AY.6	0.000041
N	385	R385K	aGa	aAa	1	1	AY.60	0.000938
N	385	R385I	aGa	aTa	1	1	AY.61	0.000105
N	385	R385I	aGa	aTa	1	1	AY.62	0.000436
N	385	R385del	AGA	---	1	1	AY.62	0.000436
N	385	R385K	aGa	aAa	1	1	AY.63	0.000387
N	385	R385G	Aga	Gga	1	1	AY.69	0.000187
N	385	R385K	aGa	aAa	1	1	AY.69	0.000187
N	385	R385R	Aga	Cga	1	1	AY.69	0.000187
N	385	R385I	aGa	aTa	1	1	AY.69	0.000187
N	385	R385I	aGa	aTa	1	1	AY.7	0.000196
N	385	R385T	aGa	aCa	1	1	AY.70	0.000209
N	385	R385G	Aga	Gga	1	1	AY.74	0.000116
N	385	R385I	aGa	aTa	1	1	AY.74	0.000116
N	385	R385T	aGa	aCa	1	1	AY.75	0.000056
N	385	R385T	aGa	aCa	1	1	AY.75.1	0.00018
N	385	R385R	agA	agG	1	1	AY.79	0.001211
N	385	R385M	aGA	aTG	1	1	AY.79	0.001211
N	385	R385I	aGa	aTa	1	1	AY.79	0.001211
N	385	R385K	aGa	aAa	1	1	AY.80	0.001129
N	385	R385K	aGa	aAa	1	1	AY.83	0.001724
N	385	R385del	AGA	---	1	1	AY.84	0.000437
N	385	R385K	aGa	aAa	1	1	AY.84	0.000437
N	385	R385I	aGa	aTa	1	1	AY.86	0.00083
N	385	R385R	Aga	Cga	1	1	AY.9	0.000068
N	385	R385I	aGa	aTa	1	1	AY.9	0.000068
N	385	R385I	aGa	aTa	1	1	AY.9.1	0.000084
N	385	R385K	aGa	aAa	1	1	AY.91	0.00073
N	385	R385K	aGa	aAa	1	1	AY.92	0.000287
N	385	R385T	aGa	aCa	1	1	AY.98	0.000079
N	385	R385K	aGa	aAa	1	1	AY.99.1	0.001553
N	385	R385G	Aga	Gga	1	1	AY.99.2	0.000092
N	385	R385T	aGa	aCa	1	1	AY.99.2	0.000092
N	385	R385R	Aga	Cga	1	1	AY.99.2	0.000092
N	385	R385I	aGa	aTa	1	1	AZ.2	0.000821
N	385	R385I	aGa	aTa	1	1	AZ.3	0.00152
N	385	R385X	Aga	Tga	1	1	B.1	0.000009
N	385	R385del1	aGa	a-a	1	1	B.1	0.000009
N	385	R385del	AGA	---	1	1	B.1.1	0.000018
N	385	R385S	agA	agC	1	1	B.1.1	0.000018
N	385	R385R	agA	agG	1	1	B.1.1.10	0.001115
N	385	R385I	aGa	aTa	1	1	B.1.1.10	0.001115
N	385	R385K	aGa	aAa	1	1	B.1.1.10	0.001115
N	385	R385M	aGA	aTG	1	1	B.1.1.10	0.001115
N	385	R385G	Aga	Gga	1	1	B.1.1.130	0.015385
N	385	R385del	AGA	---	1	1	B.1.1.139	0.022727
N	385	R385I	aGa	aTa	1	1	B.1.1.153	0.001095
N	385	R385I	aGa	aTa	1	1	B.1.1.198	0.001468
N	385	R385I	aGa	aTa	1	1	B.1.1.209	0.008929
N	385	R385G	Aga	Gga	1	1	B.1.1.214	0.000055
N	385	R385K	aGa	aAa	1	1	B.1.1.228	0.003049
N	385	R385del	AGA	---	1	1	B.1.1.236	0.006897
N	385	R385I	aGa	aTa	1	1	B.1.1.241	0.00207
N	385	R385K	aGA	aAG	1	1	B.1.1.27	0.00565
N	385	R385I	aGa	aTa	1	1	B.1.1.28	0.000311
N	385	R385R	agA	agG	1	1	B.1.1.318	0.000302
N	385	R385I	aGa	aTa	1	1	B.1.1.33	0.000421
N	385	R385T	aGa	aCa	1	1	B.1.1.34	0.013158
N	385	R385I	aGa	aTa	1	1	B.1.1.348	0.000796
N	385	R385M	aGA	aTG	1	1	B.1.1.348	0.000796
N	385	R385R	agA	agG	1	1	B.1.1.348	0.000796
N	385	R385I	aGa	aTa	1	1	B.1.1.369	0.000446
N	385	R385del	AGA	---	1	1	B.1.1.37	0.000193
N	385	R385K	aGa	aAa	1	1	B.1.1.39	0.00051
N	385	R385G	Aga	Gga	1	1	B.1.1.434	0.000349
N	385	R385K	aGa	aAa	1	1	B.1.1.442	0.018519
N	385	R385G	Aga	Gga	1	1	B.1.1.46	0.004367
N	385	R385G	Aga	Gga	1	1	B.1.1.464	0.001473
N	385	R385del1	Aga	-ga	1	1	B.1.1.519	0.00004
N	385	R385I	aGa	aTa	1	1	B.1.1.522	0.017241
N	385	R385I	aGa	aTa	1	1	B.1.1.523	0.001563
N	385	R385T	aGa	aCa	1	1	B.1.1.63	0.000386
N	385	R385E	AGa	GAa	1	1	B.1.1.7	0.000001
N	385	R385X	AGa	TAa	1	1	B.1.1.7	0.000001
N	385	R385S	agA	agT	1	1	B.1.1.7	0.000001
N	385	R385I	aGa	aTa	1	1	B.1.1.70	0.000341
N	385	R385I	aGa	aTa	1	1	B.1.1.71	0.006061
N	385	R385R	agA	agG	1	1	B.1.1.71	0.006061
N	385	R385M	aGA	aTG	1	1	B.1.1.71	0.006061
N	385	R385T	aGa	aCa	1	1	B.1.111	0.001175
N	385	R385I	aGa	aTa	1	1	B.1.146	0.004237
N	385	R385G	Aga	Gga	1	1	B.1.147	0.000756
N	385	R385X	Aga	Tga	1	1	B.1.160	0.000031
N	385	R385del1	Aga	-ga	1	1	B.1.160	0.000031
N	385	R385del	AGA	---	1	1	B.1.160.16	0.000929
N	385	R385K	aGa	aAa	1	1	B.1.160.26	0.002421
N	385	R385I	aGa	aTa	1	1	B.1.160.30	0.002976
N	385	R385I	aGa	aTa	1	1	B.1.160.32	0.004292
N	385	R385K	aGa	aAa	1	1	B.1.160.33	0.004425
N	385	R385K	aGa	aAa	1	1	B.1.160.8	0.001289
N	385	R385del	AGA	---	1	1	B.1.162	0.005025
N	385	R385K	aGa	aAa	1	1	B.1.177	0.000013
N	385	R385I	aGa	aTa	1	1	B.1.177.17	0.000821
N	385	R385K	aGa	aAa	1	1	B.1.177.26	0.006993
N	385	R385K	aGa	aAa	1	1	B.1.177.57	0.000281
N	385	R385del	AGA	---	1	1	B.1.177.62	0.001192
N	385	R385del2	AGa	--a	1	1	B.1.177.63	0.002703
N	385	R385S	agA	agC	1	1	B.1.177.7	0.000165
N	385	R385K	aGa	aAa	1	1	B.1.177.7	0.000165
N	385	R385K	aGa	aAa	1	1	B.1.177.73	0.000566
N	385	R385I	aGa	aTa	1	1	B.1.177.77	0.000726
N	385	R385R	agA	agG	1	1	B.1.177.77	0.000726
N	385	R385M	aGA	aTG	1	1	B.1.177.77	0.000726
N	385	R385K	aGa	aAa	1	1	B.1.177.8	0.000752
N	385	R385I	aGa	aTa	1	1	B.1.177.81	0.000189
N	385	R385I	aGa	aTa	1	1	B.1.179	0.003759
N	385	R385I	aGa	aTa	1	1	B.1.214	0.003663
N	385	R385K	aGa	aAa	1	1	B.1.214.2	0.0006
N	385	R385G	Aga	Gga	1	1	B.1.221	0.000071
N	385	R385T	aGa	aCa	1	1	B.1.221	0.000071
N	385	R385I	aGa	aTa	1	1	B.1.221	0.000071
N	385	R385del	AGA	---	1	1	B.1.221.3	0.000833
N	385	R385R	agA	agG	1	1	B.1.232	0.000537
N	385	R385R	agA	agG	1	1	B.1.240	0.000216
N	385	R385T	aGa	aCa	1	1	B.1.242	0.018868
N	385	R385R	Aga	Cga	1	1	B.1.243	0.00007
N	385	R385T	aGa	aCa	1	1	B.1.243	0.00007
N	385	R385I	aGa	aTa	1	1	B.1.258	0.000067
N	385	R385I	aGa	aTa	1	1	B.1.258.4	0.003448
N	385	R385K	aGa	aAa	1	1	B.1.260	0.003344
N	385	R385I	aGa	aTa	1	1	B.1.260	0.003344
N	385	R385I	aGa	aTa	1	1	B.1.265	0.001271
N	385	R385T	aGa	aCa	1	1	B.1.274	0.011905
N	385	R385T	aGa	aCa	1	1	B.1.311	0.000275
N	385	R385S	agA	agC	1	1	B.1.320	0.001245
N	385	R385T	aGa	aCa	1	1	B.1.351	0.00003
N	385	R385G	Aga	Gga	1	1	B.1.351	0.00003
N	385	R385T	aGa	aCa	1	1	B.1.36.17	0.000494
N	385	R385R	agA	agG	1	1	B.1.36.27	0.000763
N	385	R385K	aGa	aAa	1	1	B.1.36.29	0.000517
N	385	R385I	aGa	aTa	1	1	B.1.36.8	0.001
N	385	R385I	aGa	aTa	1	1	B.1.367	0.000792
N	385	R385I	aGa	aTa	1	1	B.1.380	0.006623
N	385	R385I	aGa	aTa	1	1	B.1.396	0.000706
N	385	R385del	AGA	---	1	1	B.1.415	0.014286
N	385	R385T	aGa	aCa	1	1	B.1.416	0.001269
N	385	R385del	AGA	---	1	1	B.1.416.1	0.001563
N	385	R385R	Aga	Cga	1	1	B.1.427	0.00005
N	385	R385del2	aGA	a--	1	1	B.1.438.1	0.000107
N	385	R385I	aGa	aTa	1	1	B.1.438.1	0.000107
N	385	R385R	Aga	Cga	1	1	B.1.466.2	0.000391
N	385	R385K	aGa	aAa	1	1	B.1.473	0.019231
N	385	R385R	Aga	Cga	1	1	B.1.499	0.00105
N	385	R385K	aGa	aAa	1	1	B.1.509	0.000866
N	385	R385del	AGA	---	1	1	B.1.526	0.000024
N	385	R385R	agA	agG	1	1	B.1.526	0.000024
N	385	R385I	aGa	aTa	1	1	B.1.546	0.003704
N	385	R385I	aGa	aTa	1	1	B.1.551	0.00129
N	385	R385R	Aga	Cga	1	1	B.1.560	0.00463
N	385	R385I	aGa	aTa	1	1	B.1.561	0.000397
N	385	R385R	agA	agG	1	1	B.1.575	0.000303
N	385	R385K	aGa	aAa	1	1	B.1.576	0.000907
N	385	R385I	aGa	aTa	1	1	B.1.576	0.000907
N	385	R385G	Aga	Gga	1	1	B.1.588	0.00091
N	385	R385del	AGA	---	1	1	B.1.588	0.00091
N	385	R385T	aGa	aCa	1	1	B.1.595	0.000261
N	385	R385K	aGa	aAa	1	1	B.1.595	0.000261
N	385	R385M	aGA	aTG	1	1	B.1.617.1	0.000129
N	385	R385E	AGA	GAG	1	1	B.1.617.2	0.000004
N	385	R385S	agA	agT	1	1	B.1.621	0.000089
N	385	R385del	AGA	---	1	1	B.1.621.1	0.000506
N	385	R385I	aGa	aTa	1	1	B.1.623	0.000536
N	385	R385del	AGA	---	1	1	B.1.628	0.000352
N	385	R385del	AGA	---	1	1	B.1.630	0.005236
N	385	R385R	agA	agG	1	1	B.10	0.008264
N	385	R385K	aGa	aAa	1	1	B.4.7	0.010101
N	385	R385M	aGA	aTG	1	1	B.40	0.000364
N	385	R385R	agA	agG	1	1	B.40	0.000364
N	385	R385T	aGa	aCa	1	1	C.1.2	0.004255
N	385	R385I	aGa	aTa	1	1	C.18	0.002591
N	385	R385R	agA	agG	1	1	C.36.3	0.000567
N	385	R385T	aGa	aCa	1	1	D.5	0.004975
N	385	R385I	aGa	aTa	1	1	N.1	0.016949
N	385	R385T	aGa	aCa	1	1	P.1	0.000016
N	385	R385T	aGa	aCa	1	1	P.1.14	0.000048
N	385	R385I	aGa	aTa	1	1	P.1.2	0.001156
N	385	R385R	Aga	Cga	1	1	P.3	0.001595
N	385	R385I	aGa	aTa	1	1	P.3	0.001595
N	385	R385I	aGa	aTa	1	1	Q.1	0.000126
N	385	R385K	aGa	aAa	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.