CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 384

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N384Q384HnonsyncaGcaT256521450.83625729423-29425
N384Q384HnonsyncaGcaC25654200.16374329423-29425
N384Q384LnonsyncAgcTg388388129423-29425
N384Q384QsyncaGcaA374374129423-29425
N384Q384PnonsyncAgcCg6363129423-29425
N384Q384deldelCAG---5858129423-29425
N384Q384RnonsyncAgcGg56550.98214329423-29425
N384Q384RnonsyncAGcGA5610.017857129423-29425
N384Q384XnonsynCagTag1414129423-29425
N384Q384del2delcAGc--1010129423-29425
N384Q384KnonsynCagAag77129423-29425
N384Q384InonsynCAGATA44129423-29425
N384Q384del1delcaGca-430.7529423-29425
N384Q384del1delcAgc-g410.2529423-29425
N384Q384EnonsynCagGag33129423-29425
N384Q384DnonsynCaGGaT11129423-29425
N384Q384AnonsynCAgGCg11129423-29425

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N384Q384HcaGcaT21452565All0.00041
N384Q384HcaGcaC4202565All0.00008
N384Q384LcAgcTg388388All0.000074
N384Q384QcaGcaA374374All0.000072
N384Q384HcaGcaT316316C.10.755981
N384Q384HcaGcaT261277AY.40.000406
N384Q384HcaGcaC16277AY.40.000025
N384Q384HcaGcaC188247B.1.617.20.000708
N384Q384HcaGcaT59247B.1.617.20.000222
N384Q384HcaGcaT226226C.1.20.961702
N384Q384LcAgcTg203203B.1.1.70.000182
N384Q384HcaGcaT144154B.1.1.70.000129
N384Q384HcaGcaC10154B.1.1.70.000009
N384Q384HcaGcaT99100B.1.1600.003088
N384Q384HcaGcaC1100B.1.1600.000031
N384Q384QcaGcaA9696B.1.1.70.000086
N384Q384HcaGcaT8587AY.430.000377
N384Q384HcaGcaC287AY.430.000009
N384Q384HcaGcaC7979AY.610.008277
N384Q384HcaGcaT7070B.1.1.3750.833333
N384Q384PcAgcCg6363All0.000012
N384Q384delCAG---5858All0.000011
N384Q384RcAgcGg5556All0.000011
N384Q384RcAGcGA156All0
N384Q384HcaGcaT5154B.10.000467
N384Q384HcaGcaC354B.10.000027
N384Q384QcaGcaA5353B.1.20.000467
N384Q384QcaGcaA5151AY.250.000307
N384Q384HcaGcaT3838B.1.2210.002699
N384Q384HcaGcaT3737AY.130.005956
N384Q384HcaGcaT3737B.1.1.1890.055976
N384Q384HcaGcaT3535AY.1190.001236
N384Q384PcAgcCg3535AY.40.000054
N384Q384HcaGcaT3132AY.1030.000192
N384Q384HcaGcaC132AY.1030.000006
N384Q384HcaGcaT2732B.1.10.00049
N384Q384HcaGcaC532B.1.10.000091
N384Q384HcaGcaT3232C.36.3.10.086957
N384Q384HcaGcaT3030AY.30.000298
N384Q384LcAgcTg3030AY.340.002909
N384Q384HcaGcaT2929AY.60.001193
N384Q384HcaGcaT2728AY.440.000164
N384Q384HcaGcaC128AY.440.000006
N384Q384HcaGcaT2626AY.390.000642
N384Q384QcaGcaA2222AY.540.002098
N384Q384HcaGcaC2222AY.75.10.003967
N384Q384HcaGcaT1922B.1.20.000167
N384Q384HcaGcaC322B.1.20.000026
N384Q384HcaGcaT2121AY.930.005735
N384Q384LcAgcTg1919AY.1060.006363
N384Q384QcaGcaA1919AY.40.00003
N384Q384HcaGcaT1919B.1.214.20.011391
N384Q384HcaGcaT1718P.10.000268
N384Q384HcaGcaC118P.10.000016
N384Q384HcaGcaT916AY.200.00035
N384Q384HcaGcaC716AY.200.000272
N384Q384HcaGcaC1516AY.230.001046
N384Q384HcaGcaT116AY.230.00007
N384Q384LcAgcTg1616B.1.617.20.00006
N384Q384LcAgcTg1515AY.30.000149
N384Q384PcAgcCg1515B.1.1.2140.000832
N384Q384HcaGcaT1515B.1.1.4320.018987
N384Q384HcaGcaT1515B.1.2580.000998
N384Q384QcaGcaA1515B.1.617.20.000056
N384Q384XCagTag1414All0.000003
N384Q384HcaGcaT1414AY.1200.000521
N384Q384HcaGcaT1414AY.250.000084
N384Q384HcaGcaT1314B.1.1.5190.000516
N384Q384HcaGcaC114B.1.1.5190.00004
N384Q384HcaGcaT1313C.1.11
N384Q384HcaGcaC1012AY.4.50.001075
N384Q384HcaGcaT212AY.4.50.000215
N384Q384LcAgcTg1111AY.40.000017
N384Q384QcaGcaA1111AY.430.000049
N384Q384HcaGcaT1011B.1.4270.000505
N384Q384HcaGcaC111B.1.4270.00005
N384Q384del2cAGc--1010All0.000002
N384Q384HcaGcaT1010AY.460.001041
N384Q384QcaGcaA1010P.10.000158
N384Q384HcaGcaT99B.1.1470.006803
N384Q384HcaGcaT99B.1.3510.000268
N384Q384HcaGcaC89B.6.60.007111
N384Q384HcaGcaT19B.6.60.000889
N384Q384HcaGcaT88AY.750.000448
N384Q384HcaGcaT78B.1.1770.000092
N384Q384HcaGcaC18B.1.1770.000013
N384Q384HcaGcaT88B.1.6210.000708
N384Q384HcaGcaT88P.1.40.007812
N384Q384KCagAag77All0.000001
N384Q384QcaGcaA77AY.1020.000186
N384Q384LcAgcTg77AY.440.000043
N384Q384QcaGcaA77AY.440.000043
N384Q384HcaGcaT77AY.720.009524
N384Q384HcaGcaT77AY.9.20.000257
N384Q384HcaGcaT77B.1.1.10.002287
N384Q384HcaGcaT77B.1.1.4520.777778
N384Q384HcaGcaT77B.1.3320.024476
N384Q384QcaGcaA77B.1.5250.000792
N384Q384HcaGcaT66AY.1210.000812
N384Q384LcAgcTg66AY.250.000036
N384Q384HcaGcaT66AY.340.000582
N384Q384HcaGcaT66AY.620.002614
N384Q384QcaGcaA66B.10.000055
N384Q384HcaGcaT66B.1.2430.000418
N384Q384HcaGcaT66B.1.2890.015957
N384Q384HcaGcaT66B.1.360.000875
N384Q384HcaGcaT66B.1.6280.002114
N384Q384delCAG---66C.370.000696
N384Q384HcaGcaC55AY.23.10.002087
N384Q384HcaGcaT55AY.46.40.000823
N384Q384QcaGcaA55B0.000639
N384Q384delCAG---55B.10.000046
N384Q384RcAgcGg55B.10.000046
N384Q384HcaGcaT55B.1.1.3720.003444
N384Q384RcAgcGg55B.1.1.70.000004
N384Q384RcAgcGg55B.1.1770.000066
N384Q384RcAgcGg55B.1.5820.002453
N384Q384HcaGcaT55C.36.30.002836
N384Q384ICAGATA44All0.000001
N384Q384del1caGca-34All0.000001
N384Q384del1cAgc-g14All0
N384Q384LcAgcTg44AY.1030.000025
N384Q384PcAgcCg44AY.250.000024
N384Q384HcaGcaC44AY.550.00367
N384Q384HcaGcaC44AY.710.0019
N384Q384HcaGcaT44AY.9.10.000335
N384Q384HcaGcaC24B0.000256
N384Q384HcaGcaT24B0.000256
N384Q384LcAgcTg44B.10.000037
N384Q384QcaGcaA44B.1.10.000073
N384Q384LcAgcTg44B.1.10.000073
N384Q384RcAgcGg44B.1.1.2140.000222
N384Q384LcAgcTg44B.1.1.280.001245
N384Q384delCAG---44B.1.1.70.000004
N384Q384LcAgcTg44B.1.1770.000053
N384Q384HcaGcaT44B.1.177.330.006579
N384Q384LcAgcTg44B.1.177.820.001909
N384Q384RcAgcGg44B.1.20.000035
N384Q384RcAgcGg44B.1.36.310.007005
N384Q384HcaGcaT44B.1.5260.000094
N384Q384HcaGcaT34B.1.617.10.000387
N384Q384HcaGcaC14B.1.617.10.000129
N384Q384HcaGcaC34B.60.00273
N384Q384HcaGcaT14B.60.00091
N384Q384QcaGcaA44Q.80.00066
N384Q384QcaGcaA330.166667
N384Q384ECagGag33All0.000001
N384Q384LcAgcTg33AY.1020.00008
N384Q384HcaGcaT33AY.260.000085
N384Q384LcAgcTg33AY.290.000047
N384Q384QcaGcaA33AY.30.00003
N384Q384QcaGcaA33AY.390.000074
N384Q384delCAG---33AY.40.000005
N384Q384HcaGcaT33AY.4.20.000065
N384Q384LcAgcTg33AY.430.000013
N384Q384LcAgcTg33AY.50.000062
N384Q384HcaGcaT33AY.50.000062
N384Q384HcaGcaT33AY.580.002722
N384Q384HcaGcaC23AY.90.000135
N384Q384HcaGcaT13AY.90.000068
N384Q384LcAgcTg33AY.98.10.000145
N384Q384RcAgcGg33B.1.10.000054
N384Q384HcaGcaT33B.1.1.2220.000612
N384Q384HcaGcaT23B.1.1.3480.001592
N384Q384HcaGcaC13B.1.1.3480.000796
N384Q384del2cAGc--33B.1.1.70.000003
N384Q384ICAGATA33B.1.1.70.000003
N384Q384PcAgcCg33B.1.1.70.000003
N384Q384LcAgcTg33B.1.1600.000094
N384Q384delCAG---33B.1.1770.00004
N384Q384HcaGcaT33B.1.4000.001287
N384Q384HcaGcaT33B.1.4990.003151
N384Q384HcaGcaT33B.1.6370.000219
N384Q384XCagTag33D.20.000225
N384Q384KCagAag220.111111
N384Q384delCAG---220.111111
N384Q384XCagTag220.111111
N384Q384LcAgcTg22A.2.50.000998
N384Q384LcAgcTg22A.2.5.10.009615
N384Q384HcaGcaT22AY.1000.000092
N384Q384HcaGcaT22AY.1020.000053
N384Q384HcaGcaT22AY.1170.000169
N384Q384HcaGcaT22AY.160.000759
N384Q384delCAG---22AY.230.000139
N384Q384delCAG---22AY.250.000012
N384Q384RcAgcGg22AY.250.000012
N384Q384QcaGcaA22AY.260.000057
N384Q384HcaGcaT22AY.270.000129
N384Q384LcAgcTg22AY.300.000791
N384Q384HcaGcaC12AY.300.000396
N384Q384HcaGcaT12AY.300.000396
N384Q384HcaGcaC22AY.310.037037
N384Q384HcaGcaC22AY.320.001065
N384Q384HcaGcaT22AY.34.10.00102
N384Q384HcaGcaT22AY.420.00008
N384Q384HcaGcaT22AY.470.000062
N384Q384LcAgcTg22AY.590.001059
N384Q384QcaGcaA22AY.60.000082
N384Q384HcaGcaT12AY.670.000464
N384Q384HcaGcaC12AY.670.000464
N384Q384HcaGcaT22AY.690.000373
N384Q384QcaGcaA22AY.750.000112
N384Q384HcaGcaC22AY.80.001212
N384Q384HcaGcaT22AY.98.10.000097
N384Q384XCagTag22B.10.000018
N384Q384delCAG---22B.1.10.000036
N384Q384HcaGcaT22B.1.1.280.000622
N384Q384HcaGcaC12B.1.1.3060.000438
N384Q384HcaGcaT12B.1.1.3060.000438
N384Q384HcaGcaT22B.1.1.3390.021053
N384Q384LcAgcTg22B.1.1.370.000386
N384Q384RcAgcGg22B.1.1.3700.025316
N384Q384HcaGcaT22B.1.1.4160.00181
N384Q384HcaGcaT22B.1.1.4480.004065
N384Q384LcAgcTg22B.1.1.5190.000079
N384Q384QcaGcaA22B.1.1600.000062
N384Q384QcaGcaA22B.1.1770.000026
N384Q384QcaGcaA22B.1.177.210.000153
N384Q384LcAgcTg22B.1.177.70.00033
N384Q384delCAG---22B.1.20.000018
N384Q384LcAgcTg22B.1.20.000018
N384Q384KCagAag22B.1.20.000018
N384Q384QcaGcaA22B.1.2430.000139
N384Q384RcAgcGg22B.1.3510.000059
N384Q384QcaGcaA22B.1.36.10.002281
N384Q384RcAgcGg22B.1.36.260.005714
N384Q384HcaGcaT22B.1.3890.002004
N384Q384RcAgcGg22B.1.5170.000854
N384Q384delCAG---22B.1.617.20.000008
N384Q384HcaGcaT22B.1.6230.001073
N384Q384HcaGcaT22C.370.000232
N384Q384QcaGcaA22C.370.000232
N384Q384HcaGcaT22C.60.074074
N384Q384delCAG---22P.10.000032
N384Q384delCAG---22P.1.140.000096
N384Q384HcaGcaT22P.1.140.000096
N384Q384LcAgcTg22P.1.170.000324
N384Q384LcAgcTg22Q.10.000253
N384Q384RcAgcGg11A.2.20.001689
N384Q384ACAgGCg11All0
N384Q384DCaGGaT11All0
N384Q384HcaGcaT11AU.10.001266
N384Q384HcaGcaT11AU.30.00211
N384Q384HcaGcaC11AY.100.00053
N384Q384LcAgcTg11AY.1000.000046
N384Q384delCAG---11AY.1010.00049
N384Q384ECagGag11AY.1020.000027
N384Q384delCAG---11AY.1020.000027
N384Q384PcAgcCg11AY.1020.000027
N384Q384QcaGcaA11AY.1030.000006
N384Q384RcAgcGg11AY.1030.000006
N384Q384PcAgcCg11AY.1030.000006
N384Q384HcaGcaC11AY.1100.000113
N384Q384HcaGcaT11AY.1110.000183
N384Q384delCAG---11AY.1140.000231
N384Q384LcAgcTg11AY.1180.000063
N384Q384RcAgcGg11AY.1190.000035
N384Q384LcAgcTg11AY.120.000316
N384Q384QcaGcaA11AY.140.000088
N384Q384HcaGcaT11AY.16.10.00047
N384Q384HcaGcaC11AY.170.008197
N384Q384QcaGcaA11AY.200.000039
N384Q384LcAgcTg11AY.200.000039
N384Q384LcAgcTg11AY.230.00007
N384Q384QcaGcaA11AY.270.000065
N384Q384QcaGcaA11AY.290.000016
N384Q384HcaGcaT11AY.290.000016
N384Q384XCagTag11AY.30.00001
N384Q384HcaGcaT11AY.3.10.000085
N384Q384HcaGcaT11AY.330.000067
N384Q384QcaGcaA11AY.34.10.00051
N384Q384LcAgcTg11AY.34.10.00051
N384Q384XCagTag11AY.39.10.00004
N384Q384QcaGcaA11AY.39.10.00004
N384Q384HcaGcaT11AY.39.10.00004
N384Q384RcAgcGg11AY.40.000002
N384Q384QcaGcaA11AY.4.20.000022
N384Q384QcaGcaA11AY.410.000294
N384Q384QcaGcaA11AY.420.00004
N384Q384PcAgcCg11AY.430.000004
N384Q384del2cAGc--11AY.440.000006
N384Q384RcAGcGA11AY.440.000006
N384Q384ECagGag11AY.450.000122
N384Q384QcaGcaA11AY.450.000122
N384Q384LcAgcTg11AY.460.000104
N384Q384HcaGcaT11AY.46.10.001027
N384Q384HcaGcaT11AY.46.60.000072
N384Q384HcaGcaT11AY.490.003195
N384Q384HcaGcaT11AY.5.20.002463
N384Q384HcaGcaT11AY.520.000814
N384Q384HcaGcaT11AY.530.000288
N384Q384LcAgcTg11AY.540.000095
N384Q384QcaGcaA11AY.580.000907
N384Q384HcaGcaC11AY.590.00053
N384Q384LcAgcTg11AY.610.000105
N384Q384delCAG---11AY.620.000436
N384Q384LcAgcTg11AY.660.00107
N384Q384LcAgcTg11AY.70.000196
N384Q384HcaGcaC11AY.730.000665
N384Q384delCAG---11AY.840.000437
N384Q384QcaGcaA11AY.90.000068
N384Q384LcAgcTg11AY.90.000068
N384Q384ECagGag11AY.9.10.000084
N384Q384QcaGcaA11AY.9.20.000037
N384Q384HcaGcaT11AY.900.000684
N384Q384LcAgcTg11AY.920.000287
N384Q384HcaGcaT11AY.950.000761
N384Q384QcaGcaA11AY.980.000079
N384Q384HcaGcaT11AY.980.000079
N384Q384HcaGcaT11AY.99.10.001553
N384Q384HcaGcaT11AY.99.20.000092
N384Q384del1cAgc-g11B.10.000009
N384Q384del2cAGc--11B.10.000009
N384Q384KCagAag11B.10.000009
N384Q384XCagTag11B.1.10.000018
N384Q384ICAGATA11B.1.10.000018
N384Q384HcaGcaC11B.1.1.100.001115
N384Q384delCAG---11B.1.1.1390.022727
N384Q384del2cAGc--11B.1.1.1610.003534
N384Q384HcaGcaT11B.1.1.1700.001247
N384Q384HcaGcaC11B.1.1.1710.003676
N384Q384RcAgcGg11B.1.1.2070.001182
N384Q384HcaGcaT11B.1.1.2200.001859
N384Q384QcaGcaA11B.1.1.2220.000204
N384Q384delCAG---11B.1.1.2360.006897
N384Q384HcaGcaT11B.1.1.2410.00207
N384Q384QcaGcaA11B.1.1.2430.004082
N384Q384HcaGcaC11B.1.1.250.000569
N384Q384XCagTag11B.1.1.2550.00303
N384Q384HcaGcaT11B.1.1.2630.001558
N384Q384KCagAag11B.1.1.270.00565
N384Q384HcaGcaT11B.1.1.2790.001121
N384Q384HcaGcaT11B.1.1.3050.003861
N384Q384QcaGcaA11B.1.1.3170.000412
N384Q384LcAgcTg11B.1.1.3170.000412
N384Q384HcaGcaT11B.1.1.3180.000302
N384Q384HcaGcaT11B.1.1.330.000421
N384Q384HcaGcaT11B.1.1.370.000193
N384Q384delCAG---11B.1.1.370.000193
N384Q384HcaGcaT11B.1.1.3700.012658
N384Q384HcaGcaT11B.1.1.3980.003226
N384Q384HcaGcaT11B.1.1.4020.011111
N384Q384HcaGcaT11B.1.1.4340.000349
N384Q384RcAgcGg11B.1.1.4340.000349
N384Q384HcaGcaT11B.1.1.4580.041667
N384Q384QcaGcaA11B.1.1.4590.015385
N384Q384QcaGcaA11B.1.1.5190.00004
N384Q384HcaGcaT11B.1.1.540.003021
N384Q384ACAgGCg11B.1.1.70.000001
N384Q384XCagTag11B.1.1.70.000001
N384Q384del1caGca-11B.1.1.70.000001
N384Q384HcaGcaC11B.1.1.710.006061
N384Q384delCAG---11B.1.1400.018868
N384Q384HcaGcaT11B.1.1570.002985
N384Q384HcaGcaT11B.1.160.140.002119
N384Q384delCAG---11B.1.160.160.000929
N384Q384LcAgcTg11B.1.160.230.004831
N384Q384delCAG---11B.1.1620.005025
N384Q384HcaGcaT11B.1.177.350.000691
N384Q384HcaGcaT11B.1.177.380.010417
N384Q384HcaGcaT11B.1.177.60.000977
N384Q384delCAG---11B.1.177.620.001192
N384Q384delCAG---11B.1.177.630.002703
N384Q384HcaGcaC11B.1.177.770.000726
N384Q384HcaGcaT11B.1.177.870.000728
N384Q384HcaGcaT11B.1.1790.003759
N384Q384HcaGcaT11B.1.1950.005025
N384Q384RcAgcGg11B.1.2130.014925
N384Q384QcaGcaA11B.1.2210.000071
N384Q384delCAG---11B.1.221.30.000833
N384Q384HcaGcaT11B.1.2230.002778
N384Q384HcaGcaT11B.1.230.006061
N384Q384del2cAGc--11B.1.2400.000216
N384Q384del2cAGc--11B.1.2600.003344
N384Q384XCagTag11B.1.3250.006897
N384Q384HcaGcaT11B.1.3280.03125
N384Q384DCaGGaT11B.1.3510.00003
N384Q384QcaGcaA11B.1.3510.00003
N384Q384HcaGcaT11B.1.351.20.000303
N384Q384QcaGcaA11B.1.360.000146
N384Q384HcaGcaC11B.1.36.10.00114
N384Q384HcaGcaT11B.1.36.80.001
N384Q384HcaGcaT11B.1.3620.001541
N384Q384RcAgcGg11B.1.3690.000285
N384Q384HcaGcaT11B.1.3690.000285
N384Q384HcaGcaT11B.1.3810.007812
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