CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 384

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	384	Q384H		nonsyn	caG	caT	2565	2145	0.836257	29423-29425
N	384	Q384H		nonsyn	caG	caC	2565	420	0.163743	29423-29425
N	384	Q384L		nonsyn	cAg	cTg	388	388	1	29423-29425
N	384	Q384Q		syn	caG	caA	374	374	1	29423-29425
N	384	Q384P		nonsyn	cAg	cCg	63	63	1	29423-29425
N	384	Q384del		del	CAG	---	58	58	1	29423-29425
N	384	Q384R		nonsyn	cAg	cGg	56	55	0.982143	29423-29425
N	384	Q384R		nonsyn	cAG	cGA	56	1	0.0178571	29423-29425
N	384	Q384X		nonsyn	Cag	Tag	14	14	1	29423-29425
N	384	Q384del2		del	cAG	c--	10	10	1	29423-29425
N	384	Q384K		nonsyn	Cag	Aag	7	7	1	29423-29425
N	384	Q384I		nonsyn	CAG	ATA	4	4	1	29423-29425
N	384	Q384del1		del	caG	ca-	4	3	0.75	29423-29425
N	384	Q384del1		del	cAg	c-g	4	1	0.25	29423-29425
N	384	Q384E		nonsyn	Cag	Gag	3	3	1	29423-29425
N	384	Q384D		nonsyn	CaG	GaT	1	1	1	29423-29425
N	384	Q384A		nonsyn	CAg	GCg	1	1	1	29423-29425

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	384	Q384H	caG	caT	2145	2565	All	0.00041
N	384	Q384H	caG	caC	420	2565	All	0.00008
N	384	Q384L	cAg	cTg	388	388	All	0.000074
N	384	Q384Q	caG	caA	374	374	All	0.000072
N	384	Q384H	caG	caT	316	316	C.1	0.755981
N	384	Q384H	caG	caT	261	277	AY.4	0.000406
N	384	Q384H	caG	caC	16	277	AY.4	0.000025
N	384	Q384H	caG	caC	188	247	B.1.617.2	0.000708
N	384	Q384H	caG	caT	59	247	B.1.617.2	0.000222
N	384	Q384H	caG	caT	226	226	C.1.2	0.961702
N	384	Q384L	cAg	cTg	203	203	B.1.1.7	0.000182
N	384	Q384H	caG	caT	144	154	B.1.1.7	0.000129
N	384	Q384H	caG	caC	10	154	B.1.1.7	0.000009
N	384	Q384H	caG	caT	99	100	B.1.160	0.003088
N	384	Q384H	caG	caC	1	100	B.1.160	0.000031
N	384	Q384Q	caG	caA	96	96	B.1.1.7	0.000086
N	384	Q384H	caG	caT	85	87	AY.43	0.000377
N	384	Q384H	caG	caC	2	87	AY.43	0.000009
N	384	Q384H	caG	caC	79	79	AY.61	0.008277
N	384	Q384H	caG	caT	70	70	B.1.1.375	0.833333
N	384	Q384P	cAg	cCg	63	63	All	0.000012
N	384	Q384del	CAG	---	58	58	All	0.000011
N	384	Q384R	cAg	cGg	55	56	All	0.000011
N	384	Q384R	cAG	cGA	1	56	All	0
N	384	Q384H	caG	caT	51	54	B.1	0.000467
N	384	Q384H	caG	caC	3	54	B.1	0.000027
N	384	Q384Q	caG	caA	53	53	B.1.2	0.000467
N	384	Q384Q	caG	caA	51	51	AY.25	0.000307
N	384	Q384H	caG	caT	38	38	B.1.221	0.002699
N	384	Q384H	caG	caT	37	37	AY.13	0.005956
N	384	Q384H	caG	caT	37	37	B.1.1.189	0.055976
N	384	Q384H	caG	caT	35	35	AY.119	0.001236
N	384	Q384P	cAg	cCg	35	35	AY.4	0.000054
N	384	Q384H	caG	caT	31	32	AY.103	0.000192
N	384	Q384H	caG	caC	1	32	AY.103	0.000006
N	384	Q384H	caG	caT	27	32	B.1.1	0.00049
N	384	Q384H	caG	caC	5	32	B.1.1	0.000091
N	384	Q384H	caG	caT	32	32	C.36.3.1	0.086957
N	384	Q384H	caG	caT	30	30	AY.3	0.000298
N	384	Q384L	cAg	cTg	30	30	AY.34	0.002909
N	384	Q384H	caG	caT	29	29	AY.6	0.001193
N	384	Q384H	caG	caT	27	28	AY.44	0.000164
N	384	Q384H	caG	caC	1	28	AY.44	0.000006
N	384	Q384H	caG	caT	26	26	AY.39	0.000642
N	384	Q384Q	caG	caA	22	22	AY.54	0.002098
N	384	Q384H	caG	caC	22	22	AY.75.1	0.003967
N	384	Q384H	caG	caT	19	22	B.1.2	0.000167
N	384	Q384H	caG	caC	3	22	B.1.2	0.000026
N	384	Q384H	caG	caT	21	21	AY.93	0.005735
N	384	Q384L	cAg	cTg	19	19	AY.106	0.006363
N	384	Q384Q	caG	caA	19	19	AY.4	0.00003
N	384	Q384H	caG	caT	19	19	B.1.214.2	0.011391
N	384	Q384H	caG	caT	17	18	P.1	0.000268
N	384	Q384H	caG	caC	1	18	P.1	0.000016
N	384	Q384H	caG	caT	9	16	AY.20	0.00035
N	384	Q384H	caG	caC	7	16	AY.20	0.000272
N	384	Q384H	caG	caC	15	16	AY.23	0.001046
N	384	Q384H	caG	caT	1	16	AY.23	0.00007
N	384	Q384L	cAg	cTg	16	16	B.1.617.2	0.00006
N	384	Q384L	cAg	cTg	15	15	AY.3	0.000149
N	384	Q384P	cAg	cCg	15	15	B.1.1.214	0.000832
N	384	Q384H	caG	caT	15	15	B.1.1.432	0.018987
N	384	Q384H	caG	caT	15	15	B.1.258	0.000998
N	384	Q384Q	caG	caA	15	15	B.1.617.2	0.000056
N	384	Q384X	Cag	Tag	14	14	All	0.000003
N	384	Q384H	caG	caT	14	14	AY.120	0.000521
N	384	Q384H	caG	caT	14	14	AY.25	0.000084
N	384	Q384H	caG	caT	13	14	B.1.1.519	0.000516
N	384	Q384H	caG	caC	1	14	B.1.1.519	0.00004
N	384	Q384H	caG	caT	13	13	C.1.1	1
N	384	Q384H	caG	caC	10	12	AY.4.5	0.001075
N	384	Q384H	caG	caT	2	12	AY.4.5	0.000215
N	384	Q384L	cAg	cTg	11	11	AY.4	0.000017
N	384	Q384Q	caG	caA	11	11	AY.43	0.000049
N	384	Q384H	caG	caT	10	11	B.1.427	0.000505
N	384	Q384H	caG	caC	1	11	B.1.427	0.00005
N	384	Q384del2	cAG	c--	10	10	All	0.000002
N	384	Q384H	caG	caT	10	10	AY.46	0.001041
N	384	Q384Q	caG	caA	10	10	P.1	0.000158
N	384	Q384H	caG	caT	9	9	B.1.147	0.006803
N	384	Q384H	caG	caT	9	9	B.1.351	0.000268
N	384	Q384H	caG	caC	8	9	B.6.6	0.007111
N	384	Q384H	caG	caT	1	9	B.6.6	0.000889
N	384	Q384H	caG	caT	8	8	AY.75	0.000448
N	384	Q384H	caG	caT	7	8	B.1.177	0.000092
N	384	Q384H	caG	caC	1	8	B.1.177	0.000013
N	384	Q384H	caG	caT	8	8	B.1.621	0.000708
N	384	Q384H	caG	caT	8	8	P.1.4	0.007812
N	384	Q384K	Cag	Aag	7	7	All	0.000001
N	384	Q384Q	caG	caA	7	7	AY.102	0.000186
N	384	Q384L	cAg	cTg	7	7	AY.44	0.000043
N	384	Q384Q	caG	caA	7	7	AY.44	0.000043
N	384	Q384H	caG	caT	7	7	AY.72	0.009524
N	384	Q384H	caG	caT	7	7	AY.9.2	0.000257
N	384	Q384H	caG	caT	7	7	B.1.1.1	0.002287
N	384	Q384H	caG	caT	7	7	B.1.1.452	0.777778
N	384	Q384H	caG	caT	7	7	B.1.332	0.024476
N	384	Q384Q	caG	caA	7	7	B.1.525	0.000792
N	384	Q384H	caG	caT	6	6	AY.121	0.000812
N	384	Q384L	cAg	cTg	6	6	AY.25	0.000036
N	384	Q384H	caG	caT	6	6	AY.34	0.000582
N	384	Q384H	caG	caT	6	6	AY.62	0.002614
N	384	Q384Q	caG	caA	6	6	B.1	0.000055
N	384	Q384H	caG	caT	6	6	B.1.243	0.000418
N	384	Q384H	caG	caT	6	6	B.1.289	0.015957
N	384	Q384H	caG	caT	6	6	B.1.36	0.000875
N	384	Q384H	caG	caT	6	6	B.1.628	0.002114
N	384	Q384del	CAG	---	6	6	C.37	0.000696
N	384	Q384H	caG	caC	5	5	AY.23.1	0.002087
N	384	Q384H	caG	caT	5	5	AY.46.4	0.000823
N	384	Q384Q	caG	caA	5	5	B	0.000639
N	384	Q384del	CAG	---	5	5	B.1	0.000046
N	384	Q384R	cAg	cGg	5	5	B.1	0.000046
N	384	Q384H	caG	caT	5	5	B.1.1.372	0.003444
N	384	Q384R	cAg	cGg	5	5	B.1.1.7	0.000004
N	384	Q384R	cAg	cGg	5	5	B.1.177	0.000066
N	384	Q384R	cAg	cGg	5	5	B.1.582	0.002453
N	384	Q384H	caG	caT	5	5	C.36.3	0.002836
N	384	Q384I	CAG	ATA	4	4	All	0.000001
N	384	Q384del1	caG	ca-	3	4	All	0.000001
N	384	Q384del1	cAg	c-g	1	4	All	0
N	384	Q384L	cAg	cTg	4	4	AY.103	0.000025
N	384	Q384P	cAg	cCg	4	4	AY.25	0.000024
N	384	Q384H	caG	caC	4	4	AY.55	0.00367
N	384	Q384H	caG	caC	4	4	AY.71	0.0019
N	384	Q384H	caG	caT	4	4	AY.9.1	0.000335
N	384	Q384H	caG	caC	2	4	B	0.000256
N	384	Q384H	caG	caT	2	4	B	0.000256
N	384	Q384L	cAg	cTg	4	4	B.1	0.000037
N	384	Q384Q	caG	caA	4	4	B.1.1	0.000073
N	384	Q384L	cAg	cTg	4	4	B.1.1	0.000073
N	384	Q384R	cAg	cGg	4	4	B.1.1.214	0.000222
N	384	Q384L	cAg	cTg	4	4	B.1.1.28	0.001245
N	384	Q384del	CAG	---	4	4	B.1.1.7	0.000004
N	384	Q384L	cAg	cTg	4	4	B.1.177	0.000053
N	384	Q384H	caG	caT	4	4	B.1.177.33	0.006579
N	384	Q384L	cAg	cTg	4	4	B.1.177.82	0.001909
N	384	Q384R	cAg	cGg	4	4	B.1.2	0.000035
N	384	Q384R	cAg	cGg	4	4	B.1.36.31	0.007005
N	384	Q384H	caG	caT	4	4	B.1.526	0.000094
N	384	Q384H	caG	caT	3	4	B.1.617.1	0.000387
N	384	Q384H	caG	caC	1	4	B.1.617.1	0.000129
N	384	Q384H	caG	caC	3	4	B.6	0.00273
N	384	Q384H	caG	caT	1	4	B.6	0.00091
N	384	Q384Q	caG	caA	4	4	Q.8	0.00066
N	384	Q384Q	caG	caA	3	3		0.166667
N	384	Q384E	Cag	Gag	3	3	All	0.000001
N	384	Q384L	cAg	cTg	3	3	AY.102	0.00008
N	384	Q384H	caG	caT	3	3	AY.26	0.000085
N	384	Q384L	cAg	cTg	3	3	AY.29	0.000047
N	384	Q384Q	caG	caA	3	3	AY.3	0.00003
N	384	Q384Q	caG	caA	3	3	AY.39	0.000074
N	384	Q384del	CAG	---	3	3	AY.4	0.000005
N	384	Q384H	caG	caT	3	3	AY.4.2	0.000065
N	384	Q384L	cAg	cTg	3	3	AY.43	0.000013
N	384	Q384L	cAg	cTg	3	3	AY.5	0.000062
N	384	Q384H	caG	caT	3	3	AY.5	0.000062
N	384	Q384H	caG	caT	3	3	AY.58	0.002722
N	384	Q384H	caG	caC	2	3	AY.9	0.000135
N	384	Q384H	caG	caT	1	3	AY.9	0.000068
N	384	Q384L	cAg	cTg	3	3	AY.98.1	0.000145
N	384	Q384R	cAg	cGg	3	3	B.1.1	0.000054
N	384	Q384H	caG	caT	3	3	B.1.1.222	0.000612
N	384	Q384H	caG	caT	2	3	B.1.1.348	0.001592
N	384	Q384H	caG	caC	1	3	B.1.1.348	0.000796
N	384	Q384del2	cAG	c--	3	3	B.1.1.7	0.000003
N	384	Q384I	CAG	ATA	3	3	B.1.1.7	0.000003
N	384	Q384P	cAg	cCg	3	3	B.1.1.7	0.000003
N	384	Q384L	cAg	cTg	3	3	B.1.160	0.000094
N	384	Q384del	CAG	---	3	3	B.1.177	0.00004
N	384	Q384H	caG	caT	3	3	B.1.400	0.001287
N	384	Q384H	caG	caT	3	3	B.1.499	0.003151
N	384	Q384H	caG	caT	3	3	B.1.637	0.000219
N	384	Q384X	Cag	Tag	3	3	D.2	0.000225
N	384	Q384K	Cag	Aag	2	2		0.111111
N	384	Q384del	CAG	---	2	2		0.111111
N	384	Q384X	Cag	Tag	2	2		0.111111
N	384	Q384L	cAg	cTg	2	2	A.2.5	0.000998
N	384	Q384L	cAg	cTg	2	2	A.2.5.1	0.009615
N	384	Q384H	caG	caT	2	2	AY.100	0.000092
N	384	Q384H	caG	caT	2	2	AY.102	0.000053
N	384	Q384H	caG	caT	2	2	AY.117	0.000169
N	384	Q384H	caG	caT	2	2	AY.16	0.000759
N	384	Q384del	CAG	---	2	2	AY.23	0.000139
N	384	Q384del	CAG	---	2	2	AY.25	0.000012
N	384	Q384R	cAg	cGg	2	2	AY.25	0.000012
N	384	Q384Q	caG	caA	2	2	AY.26	0.000057
N	384	Q384H	caG	caT	2	2	AY.27	0.000129
N	384	Q384L	cAg	cTg	2	2	AY.30	0.000791
N	384	Q384H	caG	caC	1	2	AY.30	0.000396
N	384	Q384H	caG	caT	1	2	AY.30	0.000396
N	384	Q384H	caG	caC	2	2	AY.31	0.037037
N	384	Q384H	caG	caC	2	2	AY.32	0.001065
N	384	Q384H	caG	caT	2	2	AY.34.1	0.00102
N	384	Q384H	caG	caT	2	2	AY.42	0.00008
N	384	Q384H	caG	caT	2	2	AY.47	0.000062
N	384	Q384L	cAg	cTg	2	2	AY.59	0.001059
N	384	Q384Q	caG	caA	2	2	AY.6	0.000082
N	384	Q384H	caG	caT	1	2	AY.67	0.000464
N	384	Q384H	caG	caC	1	2	AY.67	0.000464
N	384	Q384H	caG	caT	2	2	AY.69	0.000373
N	384	Q384Q	caG	caA	2	2	AY.75	0.000112
N	384	Q384H	caG	caC	2	2	AY.8	0.001212
N	384	Q384H	caG	caT	2	2	AY.98.1	0.000097
N	384	Q384X	Cag	Tag	2	2	B.1	0.000018
N	384	Q384del	CAG	---	2	2	B.1.1	0.000036
N	384	Q384H	caG	caT	2	2	B.1.1.28	0.000622
N	384	Q384H	caG	caC	1	2	B.1.1.306	0.000438
N	384	Q384H	caG	caT	1	2	B.1.1.306	0.000438
N	384	Q384H	caG	caT	2	2	B.1.1.339	0.021053
N	384	Q384L	cAg	cTg	2	2	B.1.1.37	0.000386
N	384	Q384R	cAg	cGg	2	2	B.1.1.370	0.025316
N	384	Q384H	caG	caT	2	2	B.1.1.416	0.00181
N	384	Q384H	caG	caT	2	2	B.1.1.448	0.004065
N	384	Q384L	cAg	cTg	2	2	B.1.1.519	0.000079
N	384	Q384Q	caG	caA	2	2	B.1.160	0.000062
N	384	Q384Q	caG	caA	2	2	B.1.177	0.000026
N	384	Q384Q	caG	caA	2	2	B.1.177.21	0.000153
N	384	Q384L	cAg	cTg	2	2	B.1.177.7	0.00033
N	384	Q384del	CAG	---	2	2	B.1.2	0.000018
N	384	Q384L	cAg	cTg	2	2	B.1.2	0.000018
N	384	Q384K	Cag	Aag	2	2	B.1.2	0.000018
N	384	Q384Q	caG	caA	2	2	B.1.243	0.000139
N	384	Q384R	cAg	cGg	2	2	B.1.351	0.000059
N	384	Q384Q	caG	caA	2	2	B.1.36.1	0.002281
N	384	Q384R	cAg	cGg	2	2	B.1.36.26	0.005714
N	384	Q384H	caG	caT	2	2	B.1.389	0.002004
N	384	Q384R	cAg	cGg	2	2	B.1.517	0.000854
N	384	Q384del	CAG	---	2	2	B.1.617.2	0.000008
N	384	Q384H	caG	caT	2	2	B.1.623	0.001073
N	384	Q384H	caG	caT	2	2	C.37	0.000232
N	384	Q384Q	caG	caA	2	2	C.37	0.000232
N	384	Q384H	caG	caT	2	2	C.6	0.074074
N	384	Q384del	CAG	---	2	2	P.1	0.000032
N	384	Q384del	CAG	---	2	2	P.1.14	0.000096
N	384	Q384H	caG	caT	2	2	P.1.14	0.000096
N	384	Q384L	cAg	cTg	2	2	P.1.17	0.000324
N	384	Q384L	cAg	cTg	2	2	Q.1	0.000253
N	384	Q384R	cAg	cGg	1	1	A.2.2	0.001689
N	384	Q384A	CAg	GCg	1	1	All	0
N	384	Q384D	CaG	GaT	1	1	All	0
N	384	Q384H	caG	caT	1	1	AU.1	0.001266
N	384	Q384H	caG	caT	1	1	AU.3	0.00211
N	384	Q384H	caG	caC	1	1	AY.10	0.00053
N	384	Q384L	cAg	cTg	1	1	AY.100	0.000046
N	384	Q384del	CAG	---	1	1	AY.101	0.00049
N	384	Q384E	Cag	Gag	1	1	AY.102	0.000027
N	384	Q384del	CAG	---	1	1	AY.102	0.000027
N	384	Q384P	cAg	cCg	1	1	AY.102	0.000027
N	384	Q384Q	caG	caA	1	1	AY.103	0.000006
N	384	Q384R	cAg	cGg	1	1	AY.103	0.000006
N	384	Q384P	cAg	cCg	1	1	AY.103	0.000006
N	384	Q384H	caG	caC	1	1	AY.110	0.000113
N	384	Q384H	caG	caT	1	1	AY.111	0.000183
N	384	Q384del	CAG	---	1	1	AY.114	0.000231
N	384	Q384L	cAg	cTg	1	1	AY.118	0.000063
N	384	Q384R	cAg	cGg	1	1	AY.119	0.000035
N	384	Q384L	cAg	cTg	1	1	AY.12	0.000316
N	384	Q384Q	caG	caA	1	1	AY.14	0.000088
N	384	Q384H	caG	caT	1	1	AY.16.1	0.00047
N	384	Q384H	caG	caC	1	1	AY.17	0.008197
N	384	Q384Q	caG	caA	1	1	AY.20	0.000039
N	384	Q384L	cAg	cTg	1	1	AY.20	0.000039
N	384	Q384L	cAg	cTg	1	1	AY.23	0.00007
N	384	Q384Q	caG	caA	1	1	AY.27	0.000065
N	384	Q384Q	caG	caA	1	1	AY.29	0.000016
N	384	Q384H	caG	caT	1	1	AY.29	0.000016
N	384	Q384X	Cag	Tag	1	1	AY.3	0.00001
N	384	Q384H	caG	caT	1	1	AY.3.1	0.000085
N	384	Q384H	caG	caT	1	1	AY.33	0.000067
N	384	Q384Q	caG	caA	1	1	AY.34.1	0.00051
N	384	Q384L	cAg	cTg	1	1	AY.34.1	0.00051
N	384	Q384X	Cag	Tag	1	1	AY.39.1	0.00004
N	384	Q384Q	caG	caA	1	1	AY.39.1	0.00004
N	384	Q384H	caG	caT	1	1	AY.39.1	0.00004
N	384	Q384R	cAg	cGg	1	1	AY.4	0.000002
N	384	Q384Q	caG	caA	1	1	AY.4.2	0.000022
N	384	Q384Q	caG	caA	1	1	AY.41	0.000294
N	384	Q384Q	caG	caA	1	1	AY.42	0.00004
N	384	Q384P	cAg	cCg	1	1	AY.43	0.000004
N	384	Q384del2	cAG	c--	1	1	AY.44	0.000006
N	384	Q384R	cAG	cGA	1	1	AY.44	0.000006
N	384	Q384E	Cag	Gag	1	1	AY.45	0.000122
N	384	Q384Q	caG	caA	1	1	AY.45	0.000122
N	384	Q384L	cAg	cTg	1	1	AY.46	0.000104
N	384	Q384H	caG	caT	1	1	AY.46.1	0.001027
N	384	Q384H	caG	caT	1	1	AY.46.6	0.000072
N	384	Q384H	caG	caT	1	1	AY.49	0.003195
N	384	Q384H	caG	caT	1	1	AY.5.2	0.002463
N	384	Q384H	caG	caT	1	1	AY.52	0.000814
N	384	Q384H	caG	caT	1	1	AY.53	0.000288
N	384	Q384L	cAg	cTg	1	1	AY.54	0.000095
N	384	Q384Q	caG	caA	1	1	AY.58	0.000907
N	384	Q384H	caG	caC	1	1	AY.59	0.00053
N	384	Q384L	cAg	cTg	1	1	AY.61	0.000105
N	384	Q384del	CAG	---	1	1	AY.62	0.000436
N	384	Q384L	cAg	cTg	1	1	AY.66	0.00107
N	384	Q384L	cAg	cTg	1	1	AY.7	0.000196
N	384	Q384H	caG	caC	1	1	AY.73	0.000665
N	384	Q384del	CAG	---	1	1	AY.84	0.000437
N	384	Q384Q	caG	caA	1	1	AY.9	0.000068
N	384	Q384L	cAg	cTg	1	1	AY.9	0.000068
N	384	Q384E	Cag	Gag	1	1	AY.9.1	0.000084
N	384	Q384Q	caG	caA	1	1	AY.9.2	0.000037
N	384	Q384H	caG	caT	1	1	AY.90	0.000684
N	384	Q384L	cAg	cTg	1	1	AY.92	0.000287
N	384	Q384H	caG	caT	1	1	AY.95	0.000761
N	384	Q384Q	caG	caA	1	1	AY.98	0.000079
N	384	Q384H	caG	caT	1	1	AY.98	0.000079
N	384	Q384H	caG	caT	1	1	AY.99.1	0.001553
N	384	Q384H	caG	caT	1	1	AY.99.2	0.000092
N	384	Q384del1	cAg	c-g	1	1	B.1	0.000009
N	384	Q384del2	cAG	c--	1	1	B.1	0.000009
N	384	Q384K	Cag	Aag	1	1	B.1	0.000009
N	384	Q384X	Cag	Tag	1	1	B.1.1	0.000018
N	384	Q384I	CAG	ATA	1	1	B.1.1	0.000018
N	384	Q384H	caG	caC	1	1	B.1.1.10	0.001115
N	384	Q384del	CAG	---	1	1	B.1.1.139	0.022727
N	384	Q384del2	cAG	c--	1	1	B.1.1.161	0.003534
N	384	Q384H	caG	caT	1	1	B.1.1.170	0.001247
N	384	Q384H	caG	caC	1	1	B.1.1.171	0.003676
N	384	Q384R	cAg	cGg	1	1	B.1.1.207	0.001182
N	384	Q384H	caG	caT	1	1	B.1.1.220	0.001859
N	384	Q384Q	caG	caA	1	1	B.1.1.222	0.000204
N	384	Q384del	CAG	---	1	1	B.1.1.236	0.006897
N	384	Q384H	caG	caT	1	1	B.1.1.241	0.00207
N	384	Q384Q	caG	caA	1	1	B.1.1.243	0.004082
N	384	Q384H	caG	caC	1	1	B.1.1.25	0.000569
N	384	Q384X	Cag	Tag	1	1	B.1.1.255	0.00303
N	384	Q384H	caG	caT	1	1	B.1.1.263	0.001558
N	384	Q384K	Cag	Aag	1	1	B.1.1.27	0.00565
N	384	Q384H	caG	caT	1	1	B.1.1.279	0.001121
N	384	Q384H	caG	caT	1	1	B.1.1.305	0.003861
N	384	Q384Q	caG	caA	1	1	B.1.1.317	0.000412
N	384	Q384L	cAg	cTg	1	1	B.1.1.317	0.000412
N	384	Q384H	caG	caT	1	1	B.1.1.318	0.000302
N	384	Q384H	caG	caT	1	1	B.1.1.33	0.000421
N	384	Q384H	caG	caT	1	1	B.1.1.37	0.000193
N	384	Q384del	CAG	---	1	1	B.1.1.37	0.000193
N	384	Q384H	caG	caT	1	1	B.1.1.370	0.012658
N	384	Q384H	caG	caT	1	1	B.1.1.398	0.003226
N	384	Q384H	caG	caT	1	1	B.1.1.402	0.011111
N	384	Q384H	caG	caT	1	1	B.1.1.434	0.000349
N	384	Q384R	cAg	cGg	1	1	B.1.1.434	0.000349
N	384	Q384H	caG	caT	1	1	B.1.1.458	0.041667
N	384	Q384Q	caG	caA	1	1	B.1.1.459	0.015385
N	384	Q384Q	caG	caA	1	1	B.1.1.519	0.00004
N	384	Q384H	caG	caT	1	1	B.1.1.54	0.003021
N	384	Q384A	CAg	GCg	1	1	B.1.1.7	0.000001
N	384	Q384X	Cag	Tag	1	1	B.1.1.7	0.000001
N	384	Q384del1	caG	ca-	1	1	B.1.1.7	0.000001
N	384	Q384H	caG	caC	1	1	B.1.1.71	0.006061
N	384	Q384del	CAG	---	1	1	B.1.140	0.018868
N	384	Q384H	caG	caT	1	1	B.1.157	0.002985
N	384	Q384H	caG	caT	1	1	B.1.160.14	0.002119
N	384	Q384del	CAG	---	1	1	B.1.160.16	0.000929
N	384	Q384L	cAg	cTg	1	1	B.1.160.23	0.004831
N	384	Q384del	CAG	---	1	1	B.1.162	0.005025
N	384	Q384H	caG	caT	1	1	B.1.177.35	0.000691
N	384	Q384H	caG	caT	1	1	B.1.177.38	0.010417
N	384	Q384H	caG	caT	1	1	B.1.177.6	0.000977
N	384	Q384del	CAG	---	1	1	B.1.177.62	0.001192
N	384	Q384del	CAG	---	1	1	B.1.177.63	0.002703
N	384	Q384H	caG	caC	1	1	B.1.177.77	0.000726
N	384	Q384H	caG	caT	1	1	B.1.177.87	0.000728
N	384	Q384H	caG	caT	1	1	B.1.179	0.003759
N	384	Q384H	caG	caT	1	1	B.1.195	0.005025
N	384	Q384R	cAg	cGg	1	1	B.1.213	0.014925
N	384	Q384Q	caG	caA	1	1	B.1.221	0.000071
N	384	Q384del	CAG	---	1	1	B.1.221.3	0.000833
N	384	Q384H	caG	caT	1	1	B.1.223	0.002778
N	384	Q384H	caG	caT	1	1	B.1.23	0.006061
N	384	Q384del2	cAG	c--	1	1	B.1.240	0.000216
N	384	Q384del2	cAG	c--	1	1	B.1.260	0.003344
N	384	Q384X	Cag	Tag	1	1	B.1.325	0.006897
N	384	Q384H	caG	caT	1	1	B.1.328	0.03125
N	384	Q384D	CaG	GaT	1	1	B.1.351	0.00003
N	384	Q384Q	caG	caA	1	1	B.1.351	0.00003
N	384	Q384H	caG	caT	1	1	B.1.351.2	0.000303
N	384	Q384Q	caG	caA	1	1	B.1.36	0.000146
N	384	Q384H	caG	caC	1	1	B.1.36.1	0.00114
N	384	Q384H	caG	caT	1	1	B.1.36.8	0.001
N	384	Q384H	caG	caT	1	1	B.1.362	0.001541
N	384	Q384R	cAg	cGg	1	1	B.1.369	0.000285
N	384	Q384H	caG	caT	1	1	B.1.369	0.000285
N	384	Q384H	caG	caT	1	1	B.1.381	0.007812
N	384	Q384H	caG	caT	1	1	B.1.396	0.000706
N	384	Q384H	caG	caC	1	1	B.1.409	0.000781
N	384	Q384del	CAG	---	1	1	B.1.415	0.014286
N	384	Q384del	CAG	---	1	1	B.1.416.1	0.001563
N	384	Q384del2	cAG	c--	1	1	B.1.427	0.00005
N	384	Q384Q	caG	caA	1	1	B.1.429	0.000024
N	384	Q384L	cAg	cTg	1	1	B.1.429	0.000024
N	384	Q384L	cAg	cTg	1	1	B.1.432	0.011236
N	384	Q384K	Cag	Aag	1	1	B.1.497	0.000315
N	384	Q384H	caG	caT	1	1	B.1.524	0.001406
N	384	Q384L	cAg	cTg	1	1	B.1.526	0.000024
N	384	Q384del1	caG	ca-	1	1	B.1.526	0.000024
N	384	Q384del	CAG	---	1	1	B.1.526	0.000024
N	384	Q384R	cAg	cGg	1	1	B.1.564	0.000426
N	384	Q384H	caG	caC	1	1	B.1.575	0.000303
N	384	Q384H	caG	caT	1	1	B.1.575.1	0.002439
N	384	Q384H	caG	caT	1	1	B.1.576	0.000907
N	384	Q384H	caG	caT	1	1	B.1.580	0.004065
N	384	Q384X	Cag	Tag	1	1	B.1.596	0.000087
N	384	Q384H	caG	caT	1	1	B.1.596	0.000087
N	384	Q384P	cAg	cCg	1	1	B.1.596	0.000087
N	384	Q384del	CAG	---	1	1	B.1.596	0.000087
N	384	Q384Q	caG	caA	1	1	B.1.596	0.000087
N	384	Q384H	caG	caT	1	1	B.1.609	0.000479
N	384	Q384del1	caG	ca-	1	1	B.1.617.2	0.000004
N	384	Q384P	cAg	cCg	1	1	B.1.617.2	0.000004
N	384	Q384H	caG	caT	1	1	B.1.617.3	0.002985
N	384	Q384R	cAg	cGg	1	1	B.1.621	0.000089
N	384	Q384del	CAG	---	1	1	B.1.621.1	0.000506
N	384	Q384del	CAG	---	1	1	B.1.628	0.000352
N	384	Q384del	CAG	---	1	1	B.1.630	0.005236
N	384	Q384Q	caG	caA	1	1	B.28	0.003279
N	384	Q384H	caG	caC	1	1	B.40	0.000364
N	384	Q384H	caG	caT	1	1	C.14	0.004329
N	384	Q384H	caG	caT	1	1	C.30	0.001727
N	384	Q384Q	caG	caA	1	1	C.35	0.000774
N	384	Q384H	caG	caT	1	1	C.35	0.000774
N	384	Q384L	cAg	cTg	1	1	C.37	0.000116
N	384	Q384H	caG	caT	1	1	D.2	0.000075
N	384	Q384P	cAg	cCg	1	1	P.1	0.000016
N	384	Q384H	caG	caT	1	1	P.1.12	0.000484
N	384	Q384Q	caG	caA	1	1	P.1.14	0.000048
N	384	Q384Q	caG	caA	1	1	P.1.15	0.000232
N	384	Q384H	caG	caT	1	1	P.1.8	0.004785
N	384	Q384H	caG	caT	1	1	P.2	0.000187
N	384	Q384del2	cAG	c--	1	1	Q.3	0.000145
N	384	Q384Q	caG	caA	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.