CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 383 & Codon = ccA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	383	P383P		syn	ccG	ccA	38266	7419	0.19388	29420-29422

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	383	P383P	ccG	ccA	7419	38266	All	0.001419
N	383	P383P	ccG	ccA	72	4221	B.1.2	0.000634
N	383	P383P	ccG	ccA	3873	3879	AY.20	0.150525
N	383	P383P	ccG	ccA	299	1797	B.1.1.7	0.000268
N	383	P383P	ccG	ccA	91	1582	B.1.617.2	0.000343
N	383	P383P	ccG	ccA	6	1342	B.1.396	0.004234
N	383	P383P	ccG	ccA	549	998	AY.43	0.002432
N	383	P383P	ccG	ccA	1	893	C.16	0.00106
N	383	P383P	ccG	ccA	224	744	AY.4	0.000349
N	383	P383P	ccG	ccA	39	589	B.1	0.000357
N	383	P383P	ccG	ccA	351	535	B.1.1	0.006367
N	383	P383P	ccG	ccA	13	374	AY.102	0.000345
N	383	P383P	ccG	ccA	64	323	AY.25	0.000385
N	383	P383P	ccG	ccA	224	232	R.1	0.020162
N	383	P383P	ccG	ccA	56	212	P.1	0.000882
N	383	P383P	ccG	ccA	89	189	AY.42	0.00358
N	383	P383P	ccG	ccA	18	184	AY.44	0.00011
N	383	P383P	ccG	ccA	67	178	AY.103	0.000416
N	383	P383P	ccG	ccA	98	151	AY.4.5	0.010534
N	383	P383P	ccG	ccA	35	148	B.1.177	0.000461
N	383	P383P	ccG	ccA	59	141	AY.3	0.000587
N	383	P383P	ccG	ccA	6	127	B.1.596	0.000523
N	383	P383P	ccG	ccA	45	122	AY.39	0.001112
N	383	P383P	ccG	ccA	2	115	B.1.78	0.017094
N	383	P383P	ccG	ccA	63	106	AY.61	0.006601
N	383	P383P	ccG	ccA	73	105	AY.7.2	0.040828
N	383	P383P	ccG	ccA	39	98	AY.34	0.003782
N	383	P383P	ccG	ccA	1	98	B.1.221	0.000071
N	383	P383P	ccG	ccA	12	96	AY.119	0.000424
N	383	P383P	ccG	ccA	72	93	AY.98.1	0.003487
N	383	P383P	ccG	ccA	53	89	AY.46.1	0.054415
N	383	P383P	ccG	ccA	5	76	AY.4.2	0.000108
N	383	P383P	ccG	ccA	44	75	AY.46	0.00458
N	383	P383P	ccG	ccA	43	72	B.1.429	0.001012
N	383	P383P	ccG	ccA	1	69	AY.37	0.000316
N	383	P383P	ccG	ccA	43	65	AY.5.4	0.011898
N	383	P383P	ccG	ccA	1	57	AY.29	0.000016
N	383	P383P	ccG	ccA	23	56	AY.75.1	0.004147
N	383	P383P	ccG	ccA	45	55	B.1.587	0.085389
N	383	P383P	ccG	ccA	6	52	AY.98	0.000474
N	383	P383P	ccG	ccA	29	42	AY.71	0.013777
N	383	P383P	ccG	ccA	39	39	B.1.177.56	0.026035
N	383	P383P	ccG	ccA	4	38	AY.54	0.000381
N	383	P383P	ccG	ccA	20	37	AY.33	0.001336
N	383	P383P	ccG	ccA	9	35	AY.5	0.000186
N	383	P383P	ccG	ccA	3	34	AY.106	0.001005
N	383	P383P	ccG	ccA	1	33	AY.111	0.000183
N	383	P383P	ccG	ccA	18	33	AY.46.6	0.0013
N	383	P383P	ccG	ccA	19	33	AY.9.2	0.000698
N	383	P383P	ccG	ccA	31	33	C.36.3	0.017584
N	383	P383P	ccG	ccA	25	33	P.1.14	0.001195
N	383	P383P	ccG	ccA	1	32	AY.100	0.000046
N	383	P383P	ccG	ccA	3	32	AY.120	0.000112
N	383	P383P	ccG	ccA	10	29	AY.26	0.000283
N	383	P383P	ccG	ccA	1	26	B.1.177.81	0.000189
N	383	P383P	ccG	ccA	2	26	B.1.351	0.000059
N	383	P383P	ccG	ccA	2	25	AY.39.1	0.000079
N	383	P383P	ccG	ccA	23	25	B.1.1.222	0.004692
N	383	P383P	ccG	ccA	3	24	AY.28	0.005671
N	383	P383P	ccG	ccA	2	24	AY.4.2.1	0.000298
N	383	P383P	ccG	ccA	3	23	AY.47	0.000093
N	383	P383P	ccG	ccA	4	22	AY.6	0.000165
N	383	P383P	ccG	ccA	6	21	AY.45	0.00073
N	383	P383P	ccG	ccA	13	21	AY.9.1	0.001088
N	383	P383P	ccG	ccA	17	21	AY.92	0.004884
N	383	P383P	ccG	ccA	4	21	B.1.526	0.000094
N	383	P383P	ccG	ccA	19	20	AY.30	0.007519
N	383	P383P	ccG	ccA	4	20	B.1.474	0.007605
N	383	P383P	ccG	ccA	14	19	B.1.399	0.027079
N	383	P383P	ccG	ccA	2	19	B.1.525	0.000226
N	383	P383P	ccG	ccA	4	19	B.1.609	0.001918
N	383	P383P	ccG	ccA	11	17	B.1.427	0.000555
N	383	P383P	ccG	ccA	13	17	P.1.1	0.00413
N	383	P383P	ccG	ccA	12	16	AY.53	0.00345
N	383	P383P	ccG	ccA	1	16	B.1.595	0.000261
N	383	P383P	ccG	ccA	3	15	AY.117	0.000254
N	383	P383P	ccG	ccA	11	15	AY.36	0.00163
N	383	P383P	ccG	ccA	5	15	AY.9	0.000338
N	383	P383P	ccG	ccA	7	15	B.1.617.1	0.000903
N	383	P383P	ccG	ccA	10	14	AY.113	0.001424
N	383	P383P	ccG	ccA	1	14	AY.74	0.000116
N	383	P383P	ccG	ccA	3	14	P.2	0.00056
N	383	P383P	ccG	ccA	5	13	AY.23	0.000349
N	383	P383P	ccG	ccA	1	12	AY.116	0.000287
N	383	P383P	ccG	ccA	3	12	AY.62	0.001307
N	383	P383P	ccG	ccA	1	12	AY.75	0.000056
N	383	P383P	ccG	ccA	1	12	B.1.1.369	0.000446
N	383	P383P	ccG	ccA	2	12	B.1.234	0.000264
N	383	P383P	ccG	ccA	8	11	B.1.1.161	0.028269
N	383	P383P	ccG	ccA	1	11	B.1.243	0.00007
N	383	P383P	ccG	ccA	8	11	B.1.575	0.002427
N	383	P383P	ccG	ccA	10	11	N.6	0.070922
N	383	P383P	ccG	ccA	1	10	AY.59	0.00053
N	383	P383P	ccG	ccA	2	10	B.1.1.214	0.000111
N	383	P383P	ccG	ccA	3	10	B.1.369	0.000856
N	383	P383P	ccG	ccA	1	10	B.1.621	0.000089
N	383	P383P	ccG	ccA	2	9	AY.24	0.000862
N	383	P383P	ccG	ccA	7	9	AY.68	0.001916
N	383	P383P	ccG	ccA	6	8	AY.52	0.004886
N	383	P383P	ccG	ccA	3	8	AY.69	0.00056
N	383	P383P	ccG	ccA	8	8	AY.70	0.001668
N	383	P383P	ccG	ccA	5	8	AY.84	0.002187
N	383	P383P	ccG	ccA	4	8	B	0.000511
N	383	P383P	ccG	ccA	3	7	AY.41	0.000882
N	383	P383P	ccG	ccA	2	7	AY.65	0.001066
N	383	P383P	ccG	ccA	3	7	B.1.466.2	0.001174
N	383	P383P	ccG	ccA	2	6	AY.97	0.003401
N	383	P383P	ccG	ccA	2	6	AY.99.2	0.000184
N	383	P383P	ccG	ccA	4	6	B.1.1.409	0.011331
N	383	P383P	ccG	ccA	6	6	B.1.621.1	0.003035
N	383	P383P	ccG	ccA	2	6	C.37	0.000232
N	383	P383P	ccG	ccA	1	6	D.2	0.000075
N	383	P383P	ccG	ccA	1	5	AY.13	0.000161
N	383	P383P	ccG	ccA	1	5	AY.16.1	0.00047
N	383	P383P	ccG	ccA	4	5	B.1.1.263	0.006231
N	383	P383P	ccG	ccA	4	5	B.1.1.71	0.024242
N	383	P383P	ccG	ccA	5	5	B.1.499	0.005252
N	383	P383P	ccG	ccA	3	5	B.1.576	0.00272
N	383	P383P	ccG	ccA	2	4	AY.67	0.000929
N	383	P383P	ccG	ccA	1	4	AY.73	0.000665
N	383	P383P	ccG	ccA	1	4	B.1.1.33	0.000421
N	383	P383P	ccG	ccA	3	4	B.1.177.4	0.000633
N	383	P383P	ccG	ccA	4	4	B.1.408	0.01476
N	383	P383P	ccG	ccA	3	4	Q.4	0.001364
N	383	P383P	ccG	ccA	3	3	AD.2	0.000657
N	383	P383P	ccG	ccA	3	3	AY.110	0.000338
N	383	P383P	ccG	ccA	1	3	AY.38	0.000499
N	383	P383P	ccG	ccA	3	3	AY.58	0.002722
N	383	P383P	ccG	ccA	3	3	AY.99.1	0.004658
N	383	P383P	ccG	ccA	3	3	B.1.1.204	0.009119
N	383	P383P	ccG	ccA	1	3	B.1.1.284	0.000107
N	383	P383P	ccG	ccA	1	3	B.1.1.50	0.000679
N	383	P383P	ccG	ccA	3	3	B.1.177.75	0.003122
N	383	P383P	ccG	ccA	1	3	B.1.375	0.00082
N	383	P383P	ccG	ccA	3	3	B.1.378	0.020548
N	383	P383P	ccG	ccA	2	3	B.1.389	0.002004
N	383	P383P	ccG	ccA	1	2	AY.101	0.00049
N	383	P383P	ccG	ccA	2	2	AY.108	0.002205
N	383	P383P	ccG	ccA	1	2	AY.120.2.1	0.000498
N	383	P383P	ccG	ccA	1	2	AY.51	0.000909
N	383	P383P	ccG	ccA	1	2	AY.7	0.000196
N	383	P383P	ccG	ccA	2	2	AY.82	0.002714
N	383	P383P	ccG	ccA	2	2	AY.95	0.001522
N	383	P383P	ccG	ccA	1	2	B.1.1.113	0.006993
N	383	P383P	ccG	ccA	1	2	B.1.1.370	0.012658
N	383	P383P	ccG	ccA	1	2	B.1.1.63	0.000386
N	383	P383P	ccG	ccA	2	2	B.1.177.58	0.002663
N	383	P383P	ccG	ccA	1	2	B.1.258.17	0.000104
N	383	P383P	ccG	ccA	1	1	A.1	0.000282
N	383	P383P	ccG	ccA	1	1	AY.104	0.001984
N	383	P383P	ccG	ccA	1	1	AY.32	0.000532
N	383	P383P	ccG	ccA	1	1	AY.4.4	0.000409
N	383	P383P	ccG	ccA	1	1	AY.85	0.000427
N	383	P383P	ccG	ccA	1	1	B.1.1.171	0.003676
N	383	P383P	ccG	ccA	1	1	B.1.1.269	0.001353
N	383	P383P	ccG	ccA	1	1	B.1.1.294	0.001266
N	383	P383P	ccG	ccA	1	1	B.1.1.388	0.045455
N	383	P383P	ccG	ccA	1	1	B.1.1.524	0.020833
N	383	P383P	ccG	ccA	1	1	B.1.1.528	0.004808
N	383	P383P	ccG	ccA	1	1	B.1.110.3	0.000718
N	383	P383P	ccG	ccA	1	1	B.1.177.21	0.000076
N	383	P383P	ccG	ccA	1	1	B.1.177.44	0.000519
N	383	P383P	ccG	ccA	1	1	B.1.221.4	0.004167
N	383	P383P	ccG	ccA	1	1	B.1.403	0.003268
N	383	P383P	ccG	ccA	1	1	B.1.432	0.011236
N	383	P383P	ccG	ccA	1	1	B.1.593	0.01087
N	383	P383P	ccG	ccA	1	1	C.36.3.1	0.002717
N	383	P383P	ccG	ccA	1	1	P.1.12	0.000484

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.