CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 383 | P383P | syn | ccG | ccA | 38266 | 7419 | 0.19388 | 29420-29422 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 383 | P383P | ccG | ccA | 7419 | 38266 | All | 0.001419 |
N | 383 | P383P | ccG | ccA | 72 | 4221 | B.1.2 | 0.000634 |
N | 383 | P383P | ccG | ccA | 3873 | 3879 | AY.20 | 0.150525 |
N | 383 | P383P | ccG | ccA | 299 | 1797 | B.1.1.7 | 0.000268 |
N | 383 | P383P | ccG | ccA | 91 | 1582 | B.1.617.2 | 0.000343 |
N | 383 | P383P | ccG | ccA | 6 | 1342 | B.1.396 | 0.004234 |
N | 383 | P383P | ccG | ccA | 549 | 998 | AY.43 | 0.002432 |
N | 383 | P383P | ccG | ccA | 1 | 893 | C.16 | 0.00106 |
N | 383 | P383P | ccG | ccA | 224 | 744 | AY.4 | 0.000349 |
N | 383 | P383P | ccG | ccA | 39 | 589 | B.1 | 0.000357 |
N | 383 | P383P | ccG | ccA | 351 | 535 | B.1.1 | 0.006367 |
N | 383 | P383P | ccG | ccA | 13 | 374 | AY.102 | 0.000345 |
N | 383 | P383P | ccG | ccA | 64 | 323 | AY.25 | 0.000385 |
N | 383 | P383P | ccG | ccA | 224 | 232 | R.1 | 0.020162 |
N | 383 | P383P | ccG | ccA | 56 | 212 | P.1 | 0.000882 |
N | 383 | P383P | ccG | ccA | 89 | 189 | AY.42 | 0.00358 |
N | 383 | P383P | ccG | ccA | 18 | 184 | AY.44 | 0.00011 |
N | 383 | P383P | ccG | ccA | 67 | 178 | AY.103 | 0.000416 |
N | 383 | P383P | ccG | ccA | 98 | 151 | AY.4.5 | 0.010534 |
N | 383 | P383P | ccG | ccA | 35 | 148 | B.1.177 | 0.000461 |
N | 383 | P383P | ccG | ccA | 59 | 141 | AY.3 | 0.000587 |
N | 383 | P383P | ccG | ccA | 6 | 127 | B.1.596 | 0.000523 |
N | 383 | P383P | ccG | ccA | 45 | 122 | AY.39 | 0.001112 |
N | 383 | P383P | ccG | ccA | 2 | 115 | B.1.78 | 0.017094 |
N | 383 | P383P | ccG | ccA | 63 | 106 | AY.61 | 0.006601 |
N | 383 | P383P | ccG | ccA | 73 | 105 | AY.7.2 | 0.040828 |
N | 383 | P383P | ccG | ccA | 39 | 98 | AY.34 | 0.003782 |
N | 383 | P383P | ccG | ccA | 1 | 98 | B.1.221 | 0.000071 |
N | 383 | P383P | ccG | ccA | 12 | 96 | AY.119 | 0.000424 |
N | 383 | P383P | ccG | ccA | 72 | 93 | AY.98.1 | 0.003487 |
N | 383 | P383P | ccG | ccA | 53 | 89 | AY.46.1 | 0.054415 |
N | 383 | P383P | ccG | ccA | 5 | 76 | AY.4.2 | 0.000108 |
N | 383 | P383P | ccG | ccA | 44 | 75 | AY.46 | 0.00458 |
N | 383 | P383P | ccG | ccA | 43 | 72 | B.1.429 | 0.001012 |
N | 383 | P383P | ccG | ccA | 1 | 69 | AY.37 | 0.000316 |
N | 383 | P383P | ccG | ccA | 43 | 65 | AY.5.4 | 0.011898 |
N | 383 | P383P | ccG | ccA | 1 | 57 | AY.29 | 0.000016 |
N | 383 | P383P | ccG | ccA | 23 | 56 | AY.75.1 | 0.004147 |
N | 383 | P383P | ccG | ccA | 45 | 55 | B.1.587 | 0.085389 |
N | 383 | P383P | ccG | ccA | 6 | 52 | AY.98 | 0.000474 |
N | 383 | P383P | ccG | ccA | 29 | 42 | AY.71 | 0.013777 |
N | 383 | P383P | ccG | ccA | 39 | 39 | B.1.177.56 | 0.026035 |
N | 383 | P383P | ccG | ccA | 4 | 38 | AY.54 | 0.000381 |
N | 383 | P383P | ccG | ccA | 20 | 37 | AY.33 | 0.001336 |
N | 383 | P383P | ccG | ccA | 9 | 35 | AY.5 | 0.000186 |
N | 383 | P383P | ccG | ccA | 3 | 34 | AY.106 | 0.001005 |
N | 383 | P383P | ccG | ccA | 1 | 33 | AY.111 | 0.000183 |
N | 383 | P383P | ccG | ccA | 18 | 33 | AY.46.6 | 0.0013 |
N | 383 | P383P | ccG | ccA | 19 | 33 | AY.9.2 | 0.000698 |
N | 383 | P383P | ccG | ccA | 31 | 33 | C.36.3 | 0.017584 |
N | 383 | P383P | ccG | ccA | 25 | 33 | P.1.14 | 0.001195 |
N | 383 | P383P | ccG | ccA | 1 | 32 | AY.100 | 0.000046 |
N | 383 | P383P | ccG | ccA | 3 | 32 | AY.120 | 0.000112 |
N | 383 | P383P | ccG | ccA | 10 | 29 | AY.26 | 0.000283 |
N | 383 | P383P | ccG | ccA | 1 | 26 | B.1.177.81 | 0.000189 |
N | 383 | P383P | ccG | ccA | 2 | 26 | B.1.351 | 0.000059 |
N | 383 | P383P | ccG | ccA | 2 | 25 | AY.39.1 | 0.000079 |
N | 383 | P383P | ccG | ccA | 23 | 25 | B.1.1.222 | 0.004692 |
N | 383 | P383P | ccG | ccA | 3 | 24 | AY.28 | 0.005671 |
N | 383 | P383P | ccG | ccA | 2 | 24 | AY.4.2.1 | 0.000298 |
N | 383 | P383P | ccG | ccA | 3 | 23 | AY.47 | 0.000093 |
N | 383 | P383P | ccG | ccA | 4 | 22 | AY.6 | 0.000165 |
N | 383 | P383P | ccG | ccA | 6 | 21 | AY.45 | 0.00073 |
N | 383 | P383P | ccG | ccA | 13 | 21 | AY.9.1 | 0.001088 |
N | 383 | P383P | ccG | ccA | 17 | 21 | AY.92 | 0.004884 |
N | 383 | P383P | ccG | ccA | 4 | 21 | B.1.526 | 0.000094 |
N | 383 | P383P | ccG | ccA | 19 | 20 | AY.30 | 0.007519 |
N | 383 | P383P | ccG | ccA | 4 | 20 | B.1.474 | 0.007605 |
N | 383 | P383P | ccG | ccA | 14 | 19 | B.1.399 | 0.027079 |
N | 383 | P383P | ccG | ccA | 2 | 19 | B.1.525 | 0.000226 |
N | 383 | P383P | ccG | ccA | 4 | 19 | B.1.609 | 0.001918 |
N | 383 | P383P | ccG | ccA | 11 | 17 | B.1.427 | 0.000555 |
N | 383 | P383P | ccG | ccA | 13 | 17 | P.1.1 | 0.00413 |
N | 383 | P383P | ccG | ccA | 12 | 16 | AY.53 | 0.00345 |
N | 383 | P383P | ccG | ccA | 1 | 16 | B.1.595 | 0.000261 |
N | 383 | P383P | ccG | ccA | 3 | 15 | AY.117 | 0.000254 |
N | 383 | P383P | ccG | ccA | 11 | 15 | AY.36 | 0.00163 |
N | 383 | P383P | ccG | ccA | 5 | 15 | AY.9 | 0.000338 |
N | 383 | P383P | ccG | ccA | 7 | 15 | B.1.617.1 | 0.000903 |
N | 383 | P383P | ccG | ccA | 10 | 14 | AY.113 | 0.001424 |
N | 383 | P383P | ccG | ccA | 1 | 14 | AY.74 | 0.000116 |
N | 383 | P383P | ccG | ccA | 3 | 14 | P.2 | 0.00056 |
N | 383 | P383P | ccG | ccA | 5 | 13 | AY.23 | 0.000349 |
N | 383 | P383P | ccG | ccA | 1 | 12 | AY.116 | 0.000287 |
N | 383 | P383P | ccG | ccA | 3 | 12 | AY.62 | 0.001307 |
N | 383 | P383P | ccG | ccA | 1 | 12 | AY.75 | 0.000056 |
N | 383 | P383P | ccG | ccA | 1 | 12 | B.1.1.369 | 0.000446 |
N | 383 | P383P | ccG | ccA | 2 | 12 | B.1.234 | 0.000264 |
N | 383 | P383P | ccG | ccA | 8 | 11 | B.1.1.161 | 0.028269 |
N | 383 | P383P | ccG | ccA | 1 | 11 | B.1.243 | 0.00007 |
N | 383 | P383P | ccG | ccA | 8 | 11 | B.1.575 | 0.002427 |
N | 383 | P383P | ccG | ccA | 10 | 11 | N.6 | 0.070922 |
N | 383 | P383P | ccG | ccA | 1 | 10 | AY.59 | 0.00053 |
N | 383 | P383P | ccG | ccA | 2 | 10 | B.1.1.214 | 0.000111 |
N | 383 | P383P | ccG | ccA | 3 | 10 | B.1.369 | 0.000856 |
N | 383 | P383P | ccG | ccA | 1 | 10 | B.1.621 | 0.000089 |
N | 383 | P383P | ccG | ccA | 2 | 9 | AY.24 | 0.000862 |
N | 383 | P383P | ccG | ccA | 7 | 9 | AY.68 | 0.001916 |
N | 383 | P383P | ccG | ccA | 6 | 8 | AY.52 | 0.004886 |
N | 383 | P383P | ccG | ccA | 3 | 8 | AY.69 | 0.00056 |
N | 383 | P383P | ccG | ccA | 8 | 8 | AY.70 | 0.001668 |
N | 383 | P383P | ccG | ccA | 5 | 8 | AY.84 | 0.002187 |
N | 383 | P383P | ccG | ccA | 4 | 8 | B | 0.000511 |
N | 383 | P383P | ccG | ccA | 3 | 7 | AY.41 | 0.000882 |
N | 383 | P383P | ccG | ccA | 2 | 7 | AY.65 | 0.001066 |
N | 383 | P383P | ccG | ccA | 3 | 7 | B.1.466.2 | 0.001174 |
N | 383 | P383P | ccG | ccA | 2 | 6 | AY.97 | 0.003401 |
N | 383 | P383P | ccG | ccA | 2 | 6 | AY.99.2 | 0.000184 |
N | 383 | P383P | ccG | ccA | 4 | 6 | B.1.1.409 | 0.011331 |
N | 383 | P383P | ccG | ccA | 6 | 6 | B.1.621.1 | 0.003035 |
N | 383 | P383P | ccG | ccA | 2 | 6 | C.37 | 0.000232 |
N | 383 | P383P | ccG | ccA | 1 | 6 | D.2 | 0.000075 |
N | 383 | P383P | ccG | ccA | 1 | 5 | AY.13 | 0.000161 |
N | 383 | P383P | ccG | ccA | 1 | 5 | AY.16.1 | 0.00047 |
N | 383 | P383P | ccG | ccA | 4 | 5 | B.1.1.263 | 0.006231 |
N | 383 | P383P | ccG | ccA | 4 | 5 | B.1.1.71 | 0.024242 |
N | 383 | P383P | ccG | ccA | 5 | 5 | B.1.499 | 0.005252 |
N | 383 | P383P | ccG | ccA | 3 | 5 | B.1.576 | 0.00272 |
N | 383 | P383P | ccG | ccA | 2 | 4 | AY.67 | 0.000929 |
N | 383 | P383P | ccG | ccA | 1 | 4 | AY.73 | 0.000665 |
N | 383 | P383P | ccG | ccA | 1 | 4 | B.1.1.33 | 0.000421 |
N | 383 | P383P | ccG | ccA | 3 | 4 | B.1.177.4 | 0.000633 |
N | 383 | P383P | ccG | ccA | 4 | 4 | B.1.408 | 0.01476 |
N | 383 | P383P | ccG | ccA | 3 | 4 | Q.4 | 0.001364 |
N | 383 | P383P | ccG | ccA | 3 | 3 | AD.2 | 0.000657 |
N | 383 | P383P | ccG | ccA | 3 | 3 | AY.110 | 0.000338 |
N | 383 | P383P | ccG | ccA | 1 | 3 | AY.38 | 0.000499 |
N | 383 | P383P | ccG | ccA | 3 | 3 | AY.58 | 0.002722 |
N | 383 | P383P | ccG | ccA | 3 | 3 | AY.99.1 | 0.004658 |
N | 383 | P383P | ccG | ccA | 3 | 3 | B.1.1.204 | 0.009119 |
N | 383 | P383P | ccG | ccA | 1 | 3 | B.1.1.284 | 0.000107 |
N | 383 | P383P | ccG | ccA | 1 | 3 | B.1.1.50 | 0.000679 |
N | 383 | P383P | ccG | ccA | 3 | 3 | B.1.177.75 | 0.003122 |
N | 383 | P383P | ccG | ccA | 1 | 3 | B.1.375 | 0.00082 |
N | 383 | P383P | ccG | ccA | 3 | 3 | B.1.378 | 0.020548 |
N | 383 | P383P | ccG | ccA | 2 | 3 | B.1.389 | 0.002004 |
N | 383 | P383P | ccG | ccA | 1 | 2 | AY.101 | 0.00049 |
N | 383 | P383P | ccG | ccA | 2 | 2 | AY.108 | 0.002205 |
N | 383 | P383P | ccG | ccA | 1 | 2 | AY.120.2.1 | 0.000498 |
N | 383 | P383P | ccG | ccA | 1 | 2 | AY.51 | 0.000909 |
N | 383 | P383P | ccG | ccA | 1 | 2 | AY.7 | 0.000196 |
N | 383 | P383P | ccG | ccA | 2 | 2 | AY.82 | 0.002714 |
N | 383 | P383P | ccG | ccA | 2 | 2 | AY.95 | 0.001522 |
N | 383 | P383P | ccG | ccA | 1 | 2 | B.1.1.113 | 0.006993 |
N | 383 | P383P | ccG | ccA | 1 | 2 | B.1.1.370 | 0.012658 |
N | 383 | P383P | ccG | ccA | 1 | 2 | B.1.1.63 | 0.000386 |
N | 383 | P383P | ccG | ccA | 2 | 2 | B.1.177.58 | 0.002663 |
N | 383 | P383P | ccG | ccA | 1 | 2 | B.1.258.17 | 0.000104 |
N | 383 | P383P | ccG | ccA | 1 | 1 | A.1 | 0.000282 |
N | 383 | P383P | ccG | ccA | 1 | 1 | AY.104 | 0.001984 |
N | 383 | P383P | ccG | ccA | 1 | 1 | AY.32 | 0.000532 |
N | 383 | P383P | ccG | ccA | 1 | 1 | AY.4.4 | 0.000409 |
N | 383 | P383P | ccG | ccA | 1 | 1 | AY.85 | 0.000427 |
N | 383 | P383P | ccG | ccA | 1 | 1 | B.1.1.171 | 0.003676 |
N | 383 | P383P | ccG | ccA | 1 | 1 | B.1.1.269 | 0.001353 |
N | 383 | P383P | ccG | ccA | 1 | 1 | B.1.1.294 | 0.001266 |
N | 383 | P383P | ccG | ccA | 1 | 1 | B.1.1.388 | 0.045455 |
N | 383 | P383P | ccG | ccA | 1 | 1 | B.1.1.524 | 0.020833 |
N | 383 | P383P | ccG | ccA | 1 | 1 | B.1.1.528 | 0.004808 |
N | 383 | P383P | ccG | ccA | 1 | 1 | B.1.110.3 | 0.000718 |
N | 383 | P383P | ccG | ccA | 1 | 1 | B.1.177.21 | 0.000076 |
N | 383 | P383P | ccG | ccA | 1 | 1 | B.1.177.44 | 0.000519 |
N | 383 | P383P | ccG | ccA | 1 | 1 | B.1.221.4 | 0.004167 |
N | 383 | P383P | ccG | ccA | 1 | 1 | B.1.403 | 0.003268 |
N | 383 | P383P | ccG | ccA | 1 | 1 | B.1.432 | 0.011236 |
N | 383 | P383P | ccG | ccA | 1 | 1 | B.1.593 | 0.01087 |
N | 383 | P383P | ccG | ccA | 1 | 1 | C.36.3.1 | 0.002717 |
N | 383 | P383P | ccG | ccA | 1 | 1 | P.1.12 | 0.000484 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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