CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 378

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N378E378QnonsynGaaCaa485948570.99958829405-29407
N378E378QnonsynGaACaG485920.00041160729405-29407
N378E378VnonsyngAagTa189418920.99894429405-29407
N378E378VnonsyngAAgTC189410.00052798329405-29407
N378E378VnonsyngAAgTT189410.00052798329405-29407
N378E378EsyngaAgaG267267129405-29407
N378E378AnonsyngAagCa2042030.99509829405-29407
N378E378AnonsyngAAgCC20410.0049019629405-29407
N378E378DnonsyngaAgaT1991570.78894529405-29407
N378E378DnonsyngaAgaC199420.21105529405-29407
N378E378GnonsyngAagGa1031020.99029129405-29407
N378E378GnonsyngAAgGC10310.0097087429405-29407
N378E378deldelGAA---9494129405-29407
N378E378KnonsynGaaAaa51500.98039229405-29407
N378E378KnonsynGaAAaG5110.019607829405-29407
N378E378XnonsynGaaTaa33320.96969729405-29407
N378E378XnonsynGAaTGa3310.03030329405-29407
N378E378del1delgAag-a530.629405-29407
N378E378del1delGaa-aa520.429405-29407
N378E378HnonsynGaACaT22129405-29407
N378E378PnonsynGAaCCa22129405-29407
N378E378LnonsynGAaCTa22129405-29407
N378E378NnonsynGaAAaT22129405-29407
N378E378del2delgAAg--210.529405-29407
N378E378del2delGAA--T210.529405-29407
N378E378WnonsynGAATGG11129405-29407
N378E378TnonsynGAAACC11129405-29407

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N378E378QGaaCaa48574859All0.000929
N378E378QGaACaG24859All0
N378E378QGaaCaa20832083B.1.5960.181509
N378E378VgAagTa18921894All0.000362
N378E378VgAAgTC11894All0
N378E378VgAAgTT11894All0
N378E378VgAagTa16011601B.1.351.50.959832
N378E378QGaaCaa11001100B.1.20.009686
N378E378QGaaCaa568569B.1.1.70.000508
N378E378QGaACaG1569B.1.1.70.000001
N378E378EgaAgaG267267All0.000051
N378E378AgAagCa203204All0.000039
N378E378AgAAgCC1204All0
N378E378DgaAgaT157199All0.00003
N378E378DgaAgaC42199All0.000008
N378E378QGaaCaa120120C.380.967742
N378E378EgaAgaG119119B.1.1.70.000107
N378E378QGaaCaa117117B.10.001072
N378E378GgAagGa102103All0.00002
N378E378GgAAgGC1103All0
N378E378QGaaCaa9696B.1.2430.00668
N378E378delGAA---9494All0.000018
N378E378VgAagTa9090B.1.2430.006263
N378E378AgAagCa8787C.160.092259
N378E378QGaaCaa7575B.1.1.5210.40107
N378E378QGaaCaa5454B.1.36.240.333333
N378E378KGaaAaa5051All0.00001
N378E378KGaAAaG151All0
N378E378DgaAgaT4849B.1.20.000423
N378E378DgaAgaC149B.1.20.000009
N378E378VgAagTa4646B.1.3510.001367
N378E378QGaaCaa4646P.1.140.002199
N378E378QGaaCaa4242B.1.1.390.021407
N378E378QGaaCaa4242B.1.1.5190.001668
N378E378GgAagGa4040B.1.1.70.000036
N378E378AgAagCa3939B.1.1.70.000035
N378E378AgAagCa3737B.1.1120.19171
N378E378QGaaCaa3535P.10.000551
N378E378XGaaTaa3233All0.000006
N378E378XGAaTGa133All0
N378E378QGaaCaa3333B.1.10.000599
N378E378VgAagTa3333B.1.1.70.00003
N378E378EgaAgaG3232P.10.000504
N378E378delGAA---3030B.1.1.70.000027
N378E378EgaAgaG2626B.1.5320.161491
N378E378QGaaCaa2525B.1.4290.000588
N378E378QGaaCaa2121B.1.5760.019039
N378E378DgaAgaT1920B.1.617.20.000072
N378E378DgaAgaC120B.1.617.20.000004
N378E378EgaAgaG1919AY.40.00003
N378E378VgAagTa1919C.360.017304
N378E378DgaAgaC1218AY.200.000466
N378E378DgaAgaT618AY.200.000233
N378E378QGaaCaa1717AY.40.000026
N378E378QGaaCaa1616B.1.3690.004564
N378E378QGaaCaa1616B.1.617.20.00006
N378E378QGaaCaa1515AY.1110.002747
N378E378DgaAgaT1215B.1.1.70.000011
N378E378DgaAgaC315B.1.1.70.000003
N378E378QGaaCaa1515B.1.1770.000198
N378E378VgAagTa1515B.1.177.350.010366
N378E378QGaaCaa1414A.2.50.006986
N378E378EgaAgaG1414B.1.1770.000184
N378E378QGaaCaa1313B.1.3510.000386
N378E378GgAagGa1212B.1.20.000106
N378E378QGaaCaa1212B.1.2180.061856
N378E378XGaaTaa1212B.60.010919
N378E378QGaaCaa1111B.1.2210.000781
N378E378QGaaCaa1111B.1.88.10.052885
N378E378QGaaCaa1010B.1.1.3180.003018
N378E378DgaAgaT1010B.1.617.10.00129
N378E378QGaaCaa1010R.10.0009
N378E378VgAagTa99B.10.000082
N378E378QGaaCaa99B.1.1.4330.012821
N378E378AgAagCa99B.1.1770.000119
N378E378DgaAgaT99B.1.2340.001187
N378E378KGaaAaa88B.10.000073
N378E378QGaaCaa88P.1.20.009249
N378E378QGaaCaa77AY.440.000043
N378E378delGAA---77B.10.000064
N378E378DgaAgaT77B.1.177.600.001529
N378E378AgAagCa77B.1.20.000062
N378E378QGaaCaa77B.1.4270.000353
N378E378QGaaCaa67B.1.466.20.002347
N378E378QGaACaG17B.1.466.20.000391
N378E378QGaaCaa77P.20.001306
N378E378VgAagTa66AL.10.077922
N378E378EgaAgaG66AY.230.000418
N378E378DgaAgaC66B.1.1.1570.005479
N378E378KGaaAaa66B.1.1770.000079
N378E378VgAagTa66B.1.177.420.005367
N378E378QGaaCaa66B.1.177.600.001311
N378E378QGaaCaa66B.1.2340.000792
N378E378QGaaCaa66B.1.360.000875
N378E378VgAagTa66B.1.5620.111111
N378E378QGaaCaa66B.1.6210.000531
N378E378GgAagGa66C.370.000696
N378E378delGAA---66C.370.000696
N378E378QGaaCaa55AD.20.001095
N378E378del1gAag-a35All0.000001
N378E378del1Gaa-aa25All0
N378E378DgaAgaT55AY.1030.000031
N378E378delGAA---55AY.40.000008
N378E378DgaAgaT45AY.40.000006
N378E378DgaAgaC15AY.40.000002
N378E378DgaAgaT55AY.4.20.000108
N378E378DgaAgaC55AY.50.000103
N378E378XGaaTaa55B.10.000046
N378E378KGaaAaa55B.1.10.000091
N378E378VgAagTa55B.1.10.000091
N378E378QGaaCaa55B.1.1.280.001556
N378E378KGaaAaa55B.1.1.70.000004
N378E378VgAagTa55B.1.1990.020661
N378E378EgaAgaG55B.1.5250.000566
N378E378QGaaCaa55B.1.5260.000118
N378E378QGaaCaa55B.1.780.042735
N378E378DgaAgaT44AY.1020.000106
N378E378EgaAgaG44AY.250.000024
N378E378KGaaAaa44AY.250.000024
N378E378DgaAgaC44AY.30.00004
N378E378QGaaCaa44AY.420.000161
N378E378QGaaCaa44AY.430.000018
N378E378EgaAgaG44AY.50.000083
N378E378QGaaCaa44B0.000511
N378E378EgaAgaG44B.10.000037
N378E378AgAagCa44B.1.1.3250.102564
N378E378VgAagTa44B.1.20.000035
N378E378VgAagTa44B.1.2580.000266
N378E378GgAagGa44B.1.3060.022857
N378E378AgAagCa44B.1.4290.000094
N378E378EgaAgaG44B.1.5580.018265
N378E378EgaAgaG44B.1.617.20.000015
N378E378EgaAgaG44B.1.6190.003484
N378E378VgAagTa44C.36.30.002269
N378E378QGaaCaa33AY.1030.000019
N378E378QGaaCaa33AY.250.000018
N378E378QGaaCaa33AY.290.000047
N378E378KGaaAaa33AY.40.000005
N378E378AgAagCa33AY.430.000013
N378E378GgAagGa33AY.440.000018
N378E378GgAagGa33AY.570.001969
N378E378EgaAgaG33AY.570.001969
N378E378QGaaCaa33AY.590.001589
N378E378XGaaTaa33B0.000383
N378E378GgAagGa33B.10.000027
N378E378delGAA---33B.1.10.000054
N378E378QGaaCaa33B.1.1.1610.010601
N378E378QGaaCaa33B.1.1.2140.000166
N378E378QGaaCaa33B.1.1.5260.010638
N378E378delGAA---33B.1.1770.00004
N378E378AgAagCa33B.1.177.60.00293
N378E378delGAA---33B.1.20.000026
N378E378VgAagTa33B.1.360.000438
N378E378QGaaCaa33B.1.36.290.001552
N378E378DgaAgaT33B.1.5990.010949
N378E378QGaaCaa33B.1.6090.001438
N378E378GgAagGa33B.1.617.20.000011
N378E378VgAagTa33B.60.00273
N378E378QGaaCaa33C.370.000348
N378E378GgAagGa33P.10.000047
N378E378QGaaCaa33P.1.150.000697
N378E378HGaACaT220.111111
N378E378NGaAAaT220.111111
N378E378PGAaCCa220.111111
N378E378delGAA---220.111111
N378E378QGaaCaa22A.20.001324
N378E378QGaaCaa22A.2.5.30.020619
N378E378HGaACaT22All0
N378E378PGAaCCa22All0
N378E378LGAaCTa22All0
N378E378NGaAAaT22All0
N378E378del2gAAg--12All0
N378E378del2GAA--T12All0
N378E378DgaAgaT22AY.1190.000071
N378E378GgAagGa22AY.200.000078
N378E378delGAA---22AY.250.000012
N378E378delGAA---22AY.260.000057
N378E378VgAagTa22AY.290.000032
N378E378EgaAgaG22AY.30.00002
N378E378DgaAgaT22AY.390.000049
N378E378GgAagGa22AY.40.000003
N378E378XGaaTaa22AY.40.000003
N378E378QGaaCaa22AY.4.20.000043
N378E378KGaaAaa22AY.430.000009
N378E378VgAagTa22AY.430.000009
N378E378DgaAgaT22AY.440.000012
N378E378DgaAgaC22AY.46.50.000397
N378E378QGaaCaa22AY.520.001629
N378E378EgaAgaG22AY.630.000774
N378E378DgaAgaT22AY.75.10.000361
N378E378QGaaCaa22AY.850.000854
N378E378GgAagGa22AY.90.000135
N378E378VgAagTa22B0.000256
N378E378AgAagCa22B.10.000018
N378E378DgaAgaT12B.10.000009
N378E378DgaAgaC12B.10.000009
N378E378QGaaCaa22B.1.1.100.00223
N378E378DgaAgaT22B.1.1.1410.004024
N378E378AgAagCa22B.1.1.2140.000111
N378E378QGaaCaa22B.1.1.3060.000877
N378E378QGaaCaa22B.1.1.330.000842
N378E378QGaaCaa22B.1.1.3480.001592
N378E378QGaaCaa22B.1.1.3770.002762
N378E378VgAagTa22B.1.1.4040.031746
N378E378QGaaCaa22B.1.1.630.000772
N378E378VgAagTa22B.1.1600.000062
N378E378QGaaCaa22B.1.1600.000062
N378E378VgAagTa22B.1.1770.000026
N378E378QGaaCaa22B.1.177.730.001133
N378E378del1Gaa-aa22B.1.20.000018
N378E378KGaaAaa22B.1.20.000018
N378E378QGaaCaa22B.1.2580.000133
N378E378QGaaCaa22B.1.258.30.00335
N378E378QGaaCaa22B.1.36.10.002281
N378E378QGaaCaa22B.1.36.100.009569
N378E378KGaaAaa22B.1.36.290.001035
N378E378QGaaCaa22B.1.36.80.002
N378E378GgAagGa22B.1.4020.019608
N378E378VgAagTa22B.1.4290.000047
N378E378delGAA---22B.1.617.20.000008
N378E378AgAAgCC12B.1.617.20.000004
N378E378AgAagCa12B.1.617.20.000004
N378E378QGaaCaa22B.1.6200.001892
N378E378QGaaCaa22B.1.621.10.001012
N378E378QGaaCaa22B.1.6370.000146
N378E378XGaaTaa22B.6.60.001778
N378E378QGaaCaa22C.160.002121
N378E378QGaaCaa22C.360.001821
N378E378KGaaAaa22D.20.00015
N378E378delGAA---22P.10.000032
N378E378VgAagTa22P.10.000032
N378E378delGAA---22P.1.140.000096
N378E378VgAagTa22Q.80.00033
N378E378KGaaAaa11A.2.20.001689
N378E378EgaAgaG11A.23.10.000704
N378E378TGAAACC11All0
N378E378WGAATGG11All0
N378E378DgaAgaT11AY.10.000396
N378E378DgaAgaT11AY.1000.000046
N378E378delGAA---11AY.1010.00049
N378E378delGAA---11AY.1020.000027
N378E378delGAA---11AY.1030.000006
N378E378KGaaAaa11AY.1030.000006
N378E378EgaAgaG11AY.1030.000006
N378E378QGaaCaa11AY.110.001339
N378E378delGAA---11AY.1140.000231
N378E378QGaaCaa11AY.1170.000085
N378E378QGaaCaa11AY.1190.000035
N378E378QGaaCaa11AY.1200.000037
N378E378GgAagGa11AY.130.000161
N378E378XGAaTGa11AY.160.00038
N378E378QGaaCaa11AY.200.000039
N378E378DgaAgaT11AY.230.00007
N378E378DgaAgaT11AY.240.000431
N378E378DgaAgaT11AY.250.000006
N378E378VgAagTa11AY.250.000006
N378E378XGaaTaa11AY.250.000006
N378E378GgAagGa11AY.260.000028
N378E378QGaaCaa11AY.260.000028
N378E378KGaaAaa11AY.270.000065
N378E378EgaAgaG11AY.290.000016
N378E378VgAagTa11AY.29.10.000221
N378E378KGaaAaa11AY.30.00001
N378E378delGAA---11AY.30.00001
N378E378QGaaCaa11AY.30.00001
N378E378VgAagTa11AY.330.000067
N378E378GgAagGa11AY.330.000067
N378E378delGAA---11AY.340.000097
N378E378EgaAgaG11AY.360.000148
N378E378DgaAgaC11AY.380.000499
N378E378KGaaAaa11AY.390.000025
N378E378QGaaCaa11AY.390.000025
N378E378DgaAgaT11AY.39.10.00004
N378E378KGaaAaa11AY.39.10.00004
N378E378DgaAgaT11AY.4.50.000107
N378E378DgaAgaC11AY.420.00004
N378E378delGAA---11AY.430.000004
N378E378EgaAgaG11AY.430.000004
N378E378XGaaTaa11AY.430.000004
N378E378GgAagGa11AY.460.000104
N378E378DgaAgaT11AY.470.000031
N378E378delGAA---11AY.470.000031
N378E378QGaaCaa11AY.540.000095
N378E378delGAA---11AY.620.000436
N378E378delGAA---11AY.670.000464
N378E378GgAagGa11AY.690.000187
N378E378VgAagTa11AY.740.000116
N378E378QGaaCaa11AY.750.000056
N378E378delGAA---11AY.840.000437
N378E378VgAagTa11AY.9.10.000084
N378E378DgaAgaT11AY.9.20.000037
N378E378QGaaCaa11AY.930.000273
N378E378DgaAgaC11AY.950.000761
N378E378EgaAgaG11AY.980.000079
N378E378QGaaCaa11AY.99.20.000092
N378E378VgAagTa11AZ.30.00152
N378E378del1gAag-a11B.10.000009
N378E378GgAagGa11B.1.10.000018
N378E378EgaAgaG11B.1.10.000018
N378E378WGAATGG11B.1.10.000018
N378E378AgAagCa11B.1.1.10.000327
N378E378EgaAgaG11B.1.1.10.000327
N378E378QGaaCaa11B.1.1.10.000327
N378E378QGaaCaa11B.1.1.1210.002427
N378E378delGAA---11B.1.1.1390.022727
N378E378VgAagTa11B.1.1.2140.000055
N378E378QGaaCaa11B.1.1.2160.00089
N378E378QGaaCaa11B.1.1.2220.000204
N378E378delGAA---11B.1.1.2360.006897
N378E378QGaaCaa11B.1.1.250.000569
N378E378AgAagCa11B.1.1.250.000569
N378E378QGaaCaa11B.1.1.2660.012195
N378E378KGaaAaa11B.1.1.270.00565
N378E378QGaaCaa11B.1.1.2730.006757
N378E378KGaaAaa11B.1.1.280.000311
N378E378DgaAgaC11B.1.1.2820.011628
N378E378GgAagGa11B.1.1.2840.000107
N378E378QGaaCaa11B.1.1.2850.006536
N378E378QGaaCaa11B.1.1.3050.003861
N378E378VgAAgTC11B.1.1.3180.000302
N378E378XGaaTaa11B.1.1.3260.001761
N378E378delGAA---11B.1.1.370.000193
N378E378GgAagGa11B.1.1.370.000193
N378E378QGaaCaa11B.1.1.370.000193
N378E378GgAagGa11B.1.1.3770.001381
N378E378KGaaAaa11B.1.1.390.00051
N378E378QGaaCaa11B.1.1.4110.014706
N378E378QGaaCaa11B.1.1.4340.000349
N378E378QGaaCaa11B.1.1.4560.055556
N378E378QGaaCaa11B.1.1.5280.004808
N378E378QGaaCaa11B.1.1.540.003021
N378E378EgaAgaG11B.1.1.630.000386
N378E378LGAaCTa11B.1.1.70.000001
N378E378del1gAag-a11B.1.1.70.000001
N378E378TGAAACC11B.1.1.70.000001
N378E378del2GAA--T11B.1.1.70.000001
N378E378QGaaCaa11B.1.1030.019231
N378E378delGAA---11B.1.1400.018868
N378E378QGaaCaa11B.1.1490.003425
N378E378AgAagCa11B.1.1530.018868
N378E378delGAA---11B.1.1600.000031
N378E378KGaaAaa11B.1.160.160.000929
N378E378delGAA---11B.1.1620.005025
N378E378DgaAgaT11B.1.1770.000013
N378E378del1gAag-a11B.1.1770.000013
N378E378DgaAgaC11B.1.177.120.000152
N378E378QGaaCaa11B.1.177.210.000076
N378E378GgAagGa11B.1.177.210.000076
N378E378QGaaCaa11B.1.177.430.001477
N378E378QGaaCaa11B.1.177.450.000381
N378E378delGAA---11B.1.177.620.001192
N378E378GgAAgGC11B.1.177.630.002703
N378E378QGaaCaa11B.1.177.70.000165
N378E378QGaaCaa11B.1.177.810.000189
N378E378EgaAgaG11B.1.20.000009
N378E378del2gAAg--11B.1.20.000009
N378E378LGAaCTa11B.1.20.000009
N378E378QGaaCaa11B.1.2220.001692
N378E378QGaaCaa11B.1.2400.000216
N378E378VgAagTa11B.1.2400.000216
N378E378QGaaCaa11B.1.258.170.000104
N378E378GgAagGa11B.1.258.70.001912
N378E378QGaaCaa11B.1.3050.002151
N378E378QGaaCaa11B.1.3110.000275
N378E378QGaaCaa11B.1.3250.006897
N378E378QGaaCaa11B.1.36.160.001425
N378E378delGAA---11B.1.36.170.000494
N378E378QGaaCaa11B.1.3670.000792
N378E378QGaaCaa11B.1.3700.008
N378E378delGAA---11B.1.3750.00082
N378E378QGaaCaa11B.1.3960.000706
N378E378VgAagTa11B.1.3970.004854
N378E378QGaaCaa11B.1.4060.006061
N378E378KGaAAaG11B.1.4150.014286
N378E378delGAA---11B.1.416.10.001563
N378E378QGaaCaa11B.1.416.10.001563
N378E378GgAagGa11B.1.4200.010417
N378E378GgAagGa11B.1.438.10.000107
N378E378QGaaCaa11B.1.438.10.000107
N378E378VgAagTa11B.1.4560.003268
N378E378QGaaCaa11B.1.4620.007246
N378E378QGaaCaa11B.1.4700.001404
N378E378AgAagCa11B.1.4970.000315
N378E378QGaaCaa11B.1.5090.000866
N378E378GgAagGa11B.1.5250.000113
N378E378QGaaCaa11B.1.5250.000113
N378E378VgAagTa11B.1.5250.000113
N378E378EgaAgaG11B.1.5260.000024
N378E378delGAA---11B.1.5260.000024
N378E378GgAagGa11B.1.5260.000024
N378E378QGaaCaa11B.1.5600.00463
N378E378QGaaCaa11B.1.5650.00081
N378E378QGaaCaa11B.1.5750.000303
N378E378GgAagGa11B.1.5770.000687
N378E378QGaaCaa11B.1.5770.000687
N378E378VgAagTa11B.1.5950.000261
N378E378EgaAgaG11B.1.5990.00365
N378E378AgAagCa11B.1.6020.006536
N378E378DgaAgaT11B.1.6090.000479
N378E378XGaaTaa11B.1.617.10.000129
N378E378KGaaAaa11B.1.617.20.000004
N378E378VgAAgTT11B.1.617.20.000004
N378E378delGAA---11B.1.621.10.000506
N378E378XGaaTaa11B.1.6230.000536
N378E378delGAA---11B.1.6280.000352
N378E378delGAA---11B.1.6300.005236
N378E378DgaAgaT11B.1.6370.000073
N378E378QGaaCaa11B.1.9.50.005682
N378E378XGaaTaa11B.400.000364
N378E378VgAagTa11C.170.055556
N378E378QGaaCaa11C.350.000774
N378E378QGaaCaa11C.36.30.000567
N378E378DgaAgaT11C.370.000116
N378E378XGaaTaa11D.20.000075
N378E378VgAagTa11D.20.000075
N378E378EgaAgaG11D.20.000075
N378E378DgaAgaC11D.20.000075
N378E378QGaaCaa11D.20.000075
N378E378DgaAgaT11P.10.000016
N378E378EgaAgaG11P.1.100.000269
N378E378EgaAgaG11P.1.140.000048
N378E378XGaaTaa11P.1.150.000232
N378E378VgAagTa11P.1.160.000374
N378E378QGaaCaa11P.1.170.000162
N378E378QGaaCaa11P.1.70.000319
N378E378GgAagGa11R.10.00009