CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 378

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	378	E378Q		nonsyn	Gaa	Caa	4859	4857	0.999588	29405-29407
N	378	E378Q		nonsyn	GaA	CaG	4859	2	0.000411607	29405-29407
N	378	E378V		nonsyn	gAa	gTa	1894	1892	0.998944	29405-29407
N	378	E378V		nonsyn	gAA	gTC	1894	1	0.000527983	29405-29407
N	378	E378V		nonsyn	gAA	gTT	1894	1	0.000527983	29405-29407
N	378	E378E		syn	gaA	gaG	267	267	1	29405-29407
N	378	E378A		nonsyn	gAa	gCa	204	203	0.995098	29405-29407
N	378	E378A		nonsyn	gAA	gCC	204	1	0.00490196	29405-29407
N	378	E378D		nonsyn	gaA	gaT	199	157	0.788945	29405-29407
N	378	E378D		nonsyn	gaA	gaC	199	42	0.211055	29405-29407
N	378	E378G		nonsyn	gAa	gGa	103	102	0.990291	29405-29407
N	378	E378G		nonsyn	gAA	gGC	103	1	0.00970874	29405-29407
N	378	E378del		del	GAA	---	94	94	1	29405-29407
N	378	E378K		nonsyn	Gaa	Aaa	51	50	0.980392	29405-29407
N	378	E378K		nonsyn	GaA	AaG	51	1	0.0196078	29405-29407
N	378	E378X		nonsyn	Gaa	Taa	33	32	0.969697	29405-29407
N	378	E378X		nonsyn	GAa	TGa	33	1	0.030303	29405-29407
N	378	E378del1		del	gAa	g-a	5	3	0.6	29405-29407
N	378	E378del1		del	Gaa	-aa	5	2	0.4	29405-29407
N	378	E378H		nonsyn	GaA	CaT	2	2	1	29405-29407
N	378	E378P		nonsyn	GAa	CCa	2	2	1	29405-29407
N	378	E378L		nonsyn	GAa	CTa	2	2	1	29405-29407
N	378	E378N		nonsyn	GaA	AaT	2	2	1	29405-29407
N	378	E378del2		del	gAA	g--	2	1	0.5	29405-29407
N	378	E378del2		del	GAA	--T	2	1	0.5	29405-29407
N	378	E378W		nonsyn	GAA	TGG	1	1	1	29405-29407
N	378	E378T		nonsyn	GAA	ACC	1	1	1	29405-29407

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	378	E378Q	Gaa	Caa	4857	4859	All	0.000929
N	378	E378Q	GaA	CaG	2	4859	All	0
N	378	E378Q	Gaa	Caa	2083	2083	B.1.596	0.181509
N	378	E378V	gAa	gTa	1892	1894	All	0.000362
N	378	E378V	gAA	gTC	1	1894	All	0
N	378	E378V	gAA	gTT	1	1894	All	0
N	378	E378V	gAa	gTa	1601	1601	B.1.351.5	0.959832
N	378	E378Q	Gaa	Caa	1100	1100	B.1.2	0.009686
N	378	E378Q	Gaa	Caa	568	569	B.1.1.7	0.000508
N	378	E378Q	GaA	CaG	1	569	B.1.1.7	0.000001
N	378	E378E	gaA	gaG	267	267	All	0.000051
N	378	E378A	gAa	gCa	203	204	All	0.000039
N	378	E378A	gAA	gCC	1	204	All	0
N	378	E378D	gaA	gaT	157	199	All	0.00003
N	378	E378D	gaA	gaC	42	199	All	0.000008
N	378	E378Q	Gaa	Caa	120	120	C.38	0.967742
N	378	E378E	gaA	gaG	119	119	B.1.1.7	0.000107
N	378	E378Q	Gaa	Caa	117	117	B.1	0.001072
N	378	E378G	gAa	gGa	102	103	All	0.00002
N	378	E378G	gAA	gGC	1	103	All	0
N	378	E378Q	Gaa	Caa	96	96	B.1.243	0.00668
N	378	E378del	GAA	---	94	94	All	0.000018
N	378	E378V	gAa	gTa	90	90	B.1.243	0.006263
N	378	E378A	gAa	gCa	87	87	C.16	0.092259
N	378	E378Q	Gaa	Caa	75	75	B.1.1.521	0.40107
N	378	E378Q	Gaa	Caa	54	54	B.1.36.24	0.333333
N	378	E378K	Gaa	Aaa	50	51	All	0.00001
N	378	E378K	GaA	AaG	1	51	All	0
N	378	E378D	gaA	gaT	48	49	B.1.2	0.000423
N	378	E378D	gaA	gaC	1	49	B.1.2	0.000009
N	378	E378V	gAa	gTa	46	46	B.1.351	0.001367
N	378	E378Q	Gaa	Caa	46	46	P.1.14	0.002199
N	378	E378Q	Gaa	Caa	42	42	B.1.1.39	0.021407
N	378	E378Q	Gaa	Caa	42	42	B.1.1.519	0.001668
N	378	E378G	gAa	gGa	40	40	B.1.1.7	0.000036
N	378	E378A	gAa	gCa	39	39	B.1.1.7	0.000035
N	378	E378A	gAa	gCa	37	37	B.1.112	0.19171
N	378	E378Q	Gaa	Caa	35	35	P.1	0.000551
N	378	E378X	Gaa	Taa	32	33	All	0.000006
N	378	E378X	GAa	TGa	1	33	All	0
N	378	E378Q	Gaa	Caa	33	33	B.1.1	0.000599
N	378	E378V	gAa	gTa	33	33	B.1.1.7	0.00003
N	378	E378E	gaA	gaG	32	32	P.1	0.000504
N	378	E378del	GAA	---	30	30	B.1.1.7	0.000027
N	378	E378E	gaA	gaG	26	26	B.1.532	0.161491
N	378	E378Q	Gaa	Caa	25	25	B.1.429	0.000588
N	378	E378Q	Gaa	Caa	21	21	B.1.576	0.019039
N	378	E378D	gaA	gaT	19	20	B.1.617.2	0.000072
N	378	E378D	gaA	gaC	1	20	B.1.617.2	0.000004
N	378	E378E	gaA	gaG	19	19	AY.4	0.00003
N	378	E378V	gAa	gTa	19	19	C.36	0.017304
N	378	E378D	gaA	gaC	12	18	AY.20	0.000466
N	378	E378D	gaA	gaT	6	18	AY.20	0.000233
N	378	E378Q	Gaa	Caa	17	17	AY.4	0.000026
N	378	E378Q	Gaa	Caa	16	16	B.1.369	0.004564
N	378	E378Q	Gaa	Caa	16	16	B.1.617.2	0.00006
N	378	E378Q	Gaa	Caa	15	15	AY.111	0.002747
N	378	E378D	gaA	gaT	12	15	B.1.1.7	0.000011
N	378	E378D	gaA	gaC	3	15	B.1.1.7	0.000003
N	378	E378Q	Gaa	Caa	15	15	B.1.177	0.000198
N	378	E378V	gAa	gTa	15	15	B.1.177.35	0.010366
N	378	E378Q	Gaa	Caa	14	14	A.2.5	0.006986
N	378	E378E	gaA	gaG	14	14	B.1.177	0.000184
N	378	E378Q	Gaa	Caa	13	13	B.1.351	0.000386
N	378	E378G	gAa	gGa	12	12	B.1.2	0.000106
N	378	E378Q	Gaa	Caa	12	12	B.1.218	0.061856
N	378	E378X	Gaa	Taa	12	12	B.6	0.010919
N	378	E378Q	Gaa	Caa	11	11	B.1.221	0.000781
N	378	E378Q	Gaa	Caa	11	11	B.1.88.1	0.052885
N	378	E378Q	Gaa	Caa	10	10	B.1.1.318	0.003018
N	378	E378D	gaA	gaT	10	10	B.1.617.1	0.00129
N	378	E378Q	Gaa	Caa	10	10	R.1	0.0009
N	378	E378V	gAa	gTa	9	9	B.1	0.000082
N	378	E378Q	Gaa	Caa	9	9	B.1.1.433	0.012821
N	378	E378A	gAa	gCa	9	9	B.1.177	0.000119
N	378	E378D	gaA	gaT	9	9	B.1.234	0.001187
N	378	E378K	Gaa	Aaa	8	8	B.1	0.000073
N	378	E378Q	Gaa	Caa	8	8	P.1.2	0.009249
N	378	E378Q	Gaa	Caa	7	7	AY.44	0.000043
N	378	E378del	GAA	---	7	7	B.1	0.000064
N	378	E378D	gaA	gaT	7	7	B.1.177.60	0.001529
N	378	E378A	gAa	gCa	7	7	B.1.2	0.000062
N	378	E378Q	Gaa	Caa	7	7	B.1.427	0.000353
N	378	E378Q	Gaa	Caa	6	7	B.1.466.2	0.002347
N	378	E378Q	GaA	CaG	1	7	B.1.466.2	0.000391
N	378	E378Q	Gaa	Caa	7	7	P.2	0.001306
N	378	E378V	gAa	gTa	6	6	AL.1	0.077922
N	378	E378E	gaA	gaG	6	6	AY.23	0.000418
N	378	E378D	gaA	gaC	6	6	B.1.1.157	0.005479
N	378	E378K	Gaa	Aaa	6	6	B.1.177	0.000079
N	378	E378V	gAa	gTa	6	6	B.1.177.42	0.005367
N	378	E378Q	Gaa	Caa	6	6	B.1.177.60	0.001311
N	378	E378Q	Gaa	Caa	6	6	B.1.234	0.000792
N	378	E378Q	Gaa	Caa	6	6	B.1.36	0.000875
N	378	E378V	gAa	gTa	6	6	B.1.562	0.111111
N	378	E378Q	Gaa	Caa	6	6	B.1.621	0.000531
N	378	E378G	gAa	gGa	6	6	C.37	0.000696
N	378	E378del	GAA	---	6	6	C.37	0.000696
N	378	E378Q	Gaa	Caa	5	5	AD.2	0.001095
N	378	E378del1	gAa	g-a	3	5	All	0.000001
N	378	E378del1	Gaa	-aa	2	5	All	0
N	378	E378D	gaA	gaT	5	5	AY.103	0.000031
N	378	E378del	GAA	---	5	5	AY.4	0.000008
N	378	E378D	gaA	gaT	4	5	AY.4	0.000006
N	378	E378D	gaA	gaC	1	5	AY.4	0.000002
N	378	E378D	gaA	gaT	5	5	AY.4.2	0.000108
N	378	E378D	gaA	gaC	5	5	AY.5	0.000103
N	378	E378X	Gaa	Taa	5	5	B.1	0.000046
N	378	E378K	Gaa	Aaa	5	5	B.1.1	0.000091
N	378	E378V	gAa	gTa	5	5	B.1.1	0.000091
N	378	E378Q	Gaa	Caa	5	5	B.1.1.28	0.001556
N	378	E378K	Gaa	Aaa	5	5	B.1.1.7	0.000004
N	378	E378V	gAa	gTa	5	5	B.1.199	0.020661
N	378	E378E	gaA	gaG	5	5	B.1.525	0.000566
N	378	E378Q	Gaa	Caa	5	5	B.1.526	0.000118
N	378	E378Q	Gaa	Caa	5	5	B.1.78	0.042735
N	378	E378D	gaA	gaT	4	4	AY.102	0.000106
N	378	E378E	gaA	gaG	4	4	AY.25	0.000024
N	378	E378K	Gaa	Aaa	4	4	AY.25	0.000024
N	378	E378D	gaA	gaC	4	4	AY.3	0.00004
N	378	E378Q	Gaa	Caa	4	4	AY.42	0.000161
N	378	E378Q	Gaa	Caa	4	4	AY.43	0.000018
N	378	E378E	gaA	gaG	4	4	AY.5	0.000083
N	378	E378Q	Gaa	Caa	4	4	B	0.000511
N	378	E378E	gaA	gaG	4	4	B.1	0.000037
N	378	E378A	gAa	gCa	4	4	B.1.1.325	0.102564
N	378	E378V	gAa	gTa	4	4	B.1.2	0.000035
N	378	E378V	gAa	gTa	4	4	B.1.258	0.000266
N	378	E378G	gAa	gGa	4	4	B.1.306	0.022857
N	378	E378A	gAa	gCa	4	4	B.1.429	0.000094
N	378	E378E	gaA	gaG	4	4	B.1.558	0.018265
N	378	E378E	gaA	gaG	4	4	B.1.617.2	0.000015
N	378	E378E	gaA	gaG	4	4	B.1.619	0.003484
N	378	E378V	gAa	gTa	4	4	C.36.3	0.002269
N	378	E378Q	Gaa	Caa	3	3	AY.103	0.000019
N	378	E378Q	Gaa	Caa	3	3	AY.25	0.000018
N	378	E378Q	Gaa	Caa	3	3	AY.29	0.000047
N	378	E378K	Gaa	Aaa	3	3	AY.4	0.000005
N	378	E378A	gAa	gCa	3	3	AY.43	0.000013
N	378	E378G	gAa	gGa	3	3	AY.44	0.000018
N	378	E378G	gAa	gGa	3	3	AY.57	0.001969
N	378	E378E	gaA	gaG	3	3	AY.57	0.001969
N	378	E378Q	Gaa	Caa	3	3	AY.59	0.001589
N	378	E378X	Gaa	Taa	3	3	B	0.000383
N	378	E378G	gAa	gGa	3	3	B.1	0.000027
N	378	E378del	GAA	---	3	3	B.1.1	0.000054
N	378	E378Q	Gaa	Caa	3	3	B.1.1.161	0.010601
N	378	E378Q	Gaa	Caa	3	3	B.1.1.214	0.000166
N	378	E378Q	Gaa	Caa	3	3	B.1.1.526	0.010638
N	378	E378del	GAA	---	3	3	B.1.177	0.00004
N	378	E378A	gAa	gCa	3	3	B.1.177.6	0.00293
N	378	E378del	GAA	---	3	3	B.1.2	0.000026
N	378	E378V	gAa	gTa	3	3	B.1.36	0.000438
N	378	E378Q	Gaa	Caa	3	3	B.1.36.29	0.001552
N	378	E378D	gaA	gaT	3	3	B.1.599	0.010949
N	378	E378Q	Gaa	Caa	3	3	B.1.609	0.001438
N	378	E378G	gAa	gGa	3	3	B.1.617.2	0.000011
N	378	E378V	gAa	gTa	3	3	B.6	0.00273
N	378	E378Q	Gaa	Caa	3	3	C.37	0.000348
N	378	E378G	gAa	gGa	3	3	P.1	0.000047
N	378	E378Q	Gaa	Caa	3	3	P.1.15	0.000697
N	378	E378H	GaA	CaT	2	2		0.111111
N	378	E378N	GaA	AaT	2	2		0.111111
N	378	E378P	GAa	CCa	2	2		0.111111
N	378	E378del	GAA	---	2	2		0.111111
N	378	E378Q	Gaa	Caa	2	2	A.2	0.001324
N	378	E378Q	Gaa	Caa	2	2	A.2.5.3	0.020619
N	378	E378H	GaA	CaT	2	2	All	0
N	378	E378P	GAa	CCa	2	2	All	0
N	378	E378L	GAa	CTa	2	2	All	0
N	378	E378N	GaA	AaT	2	2	All	0
N	378	E378del2	gAA	g--	1	2	All	0
N	378	E378del2	GAA	--T	1	2	All	0
N	378	E378D	gaA	gaT	2	2	AY.119	0.000071
N	378	E378G	gAa	gGa	2	2	AY.20	0.000078
N	378	E378del	GAA	---	2	2	AY.25	0.000012
N	378	E378del	GAA	---	2	2	AY.26	0.000057
N	378	E378V	gAa	gTa	2	2	AY.29	0.000032
N	378	E378E	gaA	gaG	2	2	AY.3	0.00002
N	378	E378D	gaA	gaT	2	2	AY.39	0.000049
N	378	E378G	gAa	gGa	2	2	AY.4	0.000003
N	378	E378X	Gaa	Taa	2	2	AY.4	0.000003
N	378	E378Q	Gaa	Caa	2	2	AY.4.2	0.000043
N	378	E378K	Gaa	Aaa	2	2	AY.43	0.000009
N	378	E378V	gAa	gTa	2	2	AY.43	0.000009
N	378	E378D	gaA	gaT	2	2	AY.44	0.000012
N	378	E378D	gaA	gaC	2	2	AY.46.5	0.000397
N	378	E378Q	Gaa	Caa	2	2	AY.52	0.001629
N	378	E378E	gaA	gaG	2	2	AY.63	0.000774
N	378	E378D	gaA	gaT	2	2	AY.75.1	0.000361
N	378	E378Q	Gaa	Caa	2	2	AY.85	0.000854
N	378	E378G	gAa	gGa	2	2	AY.9	0.000135
N	378	E378V	gAa	gTa	2	2	B	0.000256
N	378	E378A	gAa	gCa	2	2	B.1	0.000018
N	378	E378D	gaA	gaT	1	2	B.1	0.000009
N	378	E378D	gaA	gaC	1	2	B.1	0.000009
N	378	E378Q	Gaa	Caa	2	2	B.1.1.10	0.00223
N	378	E378D	gaA	gaT	2	2	B.1.1.141	0.004024
N	378	E378A	gAa	gCa	2	2	B.1.1.214	0.000111
N	378	E378Q	Gaa	Caa	2	2	B.1.1.306	0.000877
N	378	E378Q	Gaa	Caa	2	2	B.1.1.33	0.000842
N	378	E378Q	Gaa	Caa	2	2	B.1.1.348	0.001592
N	378	E378Q	Gaa	Caa	2	2	B.1.1.377	0.002762
N	378	E378V	gAa	gTa	2	2	B.1.1.404	0.031746
N	378	E378Q	Gaa	Caa	2	2	B.1.1.63	0.000772
N	378	E378V	gAa	gTa	2	2	B.1.160	0.000062
N	378	E378Q	Gaa	Caa	2	2	B.1.160	0.000062
N	378	E378V	gAa	gTa	2	2	B.1.177	0.000026
N	378	E378Q	Gaa	Caa	2	2	B.1.177.73	0.001133
N	378	E378del1	Gaa	-aa	2	2	B.1.2	0.000018
N	378	E378K	Gaa	Aaa	2	2	B.1.2	0.000018
N	378	E378Q	Gaa	Caa	2	2	B.1.258	0.000133
N	378	E378Q	Gaa	Caa	2	2	B.1.258.3	0.00335
N	378	E378Q	Gaa	Caa	2	2	B.1.36.1	0.002281
N	378	E378Q	Gaa	Caa	2	2	B.1.36.10	0.009569
N	378	E378K	Gaa	Aaa	2	2	B.1.36.29	0.001035
N	378	E378Q	Gaa	Caa	2	2	B.1.36.8	0.002
N	378	E378G	gAa	gGa	2	2	B.1.402	0.019608
N	378	E378V	gAa	gTa	2	2	B.1.429	0.000047
N	378	E378del	GAA	---	2	2	B.1.617.2	0.000008
N	378	E378A	gAA	gCC	1	2	B.1.617.2	0.000004
N	378	E378A	gAa	gCa	1	2	B.1.617.2	0.000004
N	378	E378Q	Gaa	Caa	2	2	B.1.620	0.001892
N	378	E378Q	Gaa	Caa	2	2	B.1.621.1	0.001012
N	378	E378Q	Gaa	Caa	2	2	B.1.637	0.000146
N	378	E378X	Gaa	Taa	2	2	B.6.6	0.001778
N	378	E378Q	Gaa	Caa	2	2	C.16	0.002121
N	378	E378Q	Gaa	Caa	2	2	C.36	0.001821
N	378	E378K	Gaa	Aaa	2	2	D.2	0.00015
N	378	E378del	GAA	---	2	2	P.1	0.000032
N	378	E378V	gAa	gTa	2	2	P.1	0.000032
N	378	E378del	GAA	---	2	2	P.1.14	0.000096
N	378	E378V	gAa	gTa	2	2	Q.8	0.00033
N	378	E378K	Gaa	Aaa	1	1	A.2.2	0.001689
N	378	E378E	gaA	gaG	1	1	A.23.1	0.000704
N	378	E378T	GAA	ACC	1	1	All	0
N	378	E378W	GAA	TGG	1	1	All	0
N	378	E378D	gaA	gaT	1	1	AY.1	0.000396
N	378	E378D	gaA	gaT	1	1	AY.100	0.000046
N	378	E378del	GAA	---	1	1	AY.101	0.00049
N	378	E378del	GAA	---	1	1	AY.102	0.000027
N	378	E378del	GAA	---	1	1	AY.103	0.000006
N	378	E378K	Gaa	Aaa	1	1	AY.103	0.000006
N	378	E378E	gaA	gaG	1	1	AY.103	0.000006
N	378	E378Q	Gaa	Caa	1	1	AY.11	0.001339
N	378	E378del	GAA	---	1	1	AY.114	0.000231
N	378	E378Q	Gaa	Caa	1	1	AY.117	0.000085
N	378	E378Q	Gaa	Caa	1	1	AY.119	0.000035
N	378	E378Q	Gaa	Caa	1	1	AY.120	0.000037
N	378	E378G	gAa	gGa	1	1	AY.13	0.000161
N	378	E378X	GAa	TGa	1	1	AY.16	0.00038
N	378	E378Q	Gaa	Caa	1	1	AY.20	0.000039
N	378	E378D	gaA	gaT	1	1	AY.23	0.00007
N	378	E378D	gaA	gaT	1	1	AY.24	0.000431
N	378	E378D	gaA	gaT	1	1	AY.25	0.000006
N	378	E378V	gAa	gTa	1	1	AY.25	0.000006
N	378	E378X	Gaa	Taa	1	1	AY.25	0.000006
N	378	E378G	gAa	gGa	1	1	AY.26	0.000028
N	378	E378Q	Gaa	Caa	1	1	AY.26	0.000028
N	378	E378K	Gaa	Aaa	1	1	AY.27	0.000065
N	378	E378E	gaA	gaG	1	1	AY.29	0.000016
N	378	E378V	gAa	gTa	1	1	AY.29.1	0.000221
N	378	E378K	Gaa	Aaa	1	1	AY.3	0.00001
N	378	E378del	GAA	---	1	1	AY.3	0.00001
N	378	E378Q	Gaa	Caa	1	1	AY.3	0.00001
N	378	E378V	gAa	gTa	1	1	AY.33	0.000067
N	378	E378G	gAa	gGa	1	1	AY.33	0.000067
N	378	E378del	GAA	---	1	1	AY.34	0.000097
N	378	E378E	gaA	gaG	1	1	AY.36	0.000148
N	378	E378D	gaA	gaC	1	1	AY.38	0.000499
N	378	E378K	Gaa	Aaa	1	1	AY.39	0.000025
N	378	E378Q	Gaa	Caa	1	1	AY.39	0.000025
N	378	E378D	gaA	gaT	1	1	AY.39.1	0.00004
N	378	E378K	Gaa	Aaa	1	1	AY.39.1	0.00004
N	378	E378D	gaA	gaT	1	1	AY.4.5	0.000107
N	378	E378D	gaA	gaC	1	1	AY.42	0.00004
N	378	E378del	GAA	---	1	1	AY.43	0.000004
N	378	E378E	gaA	gaG	1	1	AY.43	0.000004
N	378	E378X	Gaa	Taa	1	1	AY.43	0.000004
N	378	E378G	gAa	gGa	1	1	AY.46	0.000104
N	378	E378D	gaA	gaT	1	1	AY.47	0.000031
N	378	E378del	GAA	---	1	1	AY.47	0.000031
N	378	E378Q	Gaa	Caa	1	1	AY.54	0.000095
N	378	E378del	GAA	---	1	1	AY.62	0.000436
N	378	E378del	GAA	---	1	1	AY.67	0.000464
N	378	E378G	gAa	gGa	1	1	AY.69	0.000187
N	378	E378V	gAa	gTa	1	1	AY.74	0.000116
N	378	E378Q	Gaa	Caa	1	1	AY.75	0.000056
N	378	E378del	GAA	---	1	1	AY.84	0.000437
N	378	E378V	gAa	gTa	1	1	AY.9.1	0.000084
N	378	E378D	gaA	gaT	1	1	AY.9.2	0.000037
N	378	E378Q	Gaa	Caa	1	1	AY.93	0.000273
N	378	E378D	gaA	gaC	1	1	AY.95	0.000761
N	378	E378E	gaA	gaG	1	1	AY.98	0.000079
N	378	E378Q	Gaa	Caa	1	1	AY.99.2	0.000092
N	378	E378V	gAa	gTa	1	1	AZ.3	0.00152
N	378	E378del1	gAa	g-a	1	1	B.1	0.000009
N	378	E378G	gAa	gGa	1	1	B.1.1	0.000018
N	378	E378E	gaA	gaG	1	1	B.1.1	0.000018
N	378	E378W	GAA	TGG	1	1	B.1.1	0.000018
N	378	E378A	gAa	gCa	1	1	B.1.1.1	0.000327
N	378	E378E	gaA	gaG	1	1	B.1.1.1	0.000327
N	378	E378Q	Gaa	Caa	1	1	B.1.1.1	0.000327
N	378	E378Q	Gaa	Caa	1	1	B.1.1.121	0.002427
N	378	E378del	GAA	---	1	1	B.1.1.139	0.022727
N	378	E378V	gAa	gTa	1	1	B.1.1.214	0.000055
N	378	E378Q	Gaa	Caa	1	1	B.1.1.216	0.00089
N	378	E378Q	Gaa	Caa	1	1	B.1.1.222	0.000204
N	378	E378del	GAA	---	1	1	B.1.1.236	0.006897
N	378	E378Q	Gaa	Caa	1	1	B.1.1.25	0.000569
N	378	E378A	gAa	gCa	1	1	B.1.1.25	0.000569
N	378	E378Q	Gaa	Caa	1	1	B.1.1.266	0.012195
N	378	E378K	Gaa	Aaa	1	1	B.1.1.27	0.00565
N	378	E378Q	Gaa	Caa	1	1	B.1.1.273	0.006757
N	378	E378K	Gaa	Aaa	1	1	B.1.1.28	0.000311
N	378	E378D	gaA	gaC	1	1	B.1.1.282	0.011628
N	378	E378G	gAa	gGa	1	1	B.1.1.284	0.000107
N	378	E378Q	Gaa	Caa	1	1	B.1.1.285	0.006536
N	378	E378Q	Gaa	Caa	1	1	B.1.1.305	0.003861
N	378	E378V	gAA	gTC	1	1	B.1.1.318	0.000302
N	378	E378X	Gaa	Taa	1	1	B.1.1.326	0.001761
N	378	E378del	GAA	---	1	1	B.1.1.37	0.000193
N	378	E378G	gAa	gGa	1	1	B.1.1.37	0.000193
N	378	E378Q	Gaa	Caa	1	1	B.1.1.37	0.000193
N	378	E378G	gAa	gGa	1	1	B.1.1.377	0.001381
N	378	E378K	Gaa	Aaa	1	1	B.1.1.39	0.00051
N	378	E378Q	Gaa	Caa	1	1	B.1.1.411	0.014706
N	378	E378Q	Gaa	Caa	1	1	B.1.1.434	0.000349
N	378	E378Q	Gaa	Caa	1	1	B.1.1.456	0.055556
N	378	E378Q	Gaa	Caa	1	1	B.1.1.528	0.004808
N	378	E378Q	Gaa	Caa	1	1	B.1.1.54	0.003021
N	378	E378E	gaA	gaG	1	1	B.1.1.63	0.000386
N	378	E378L	GAa	CTa	1	1	B.1.1.7	0.000001
N	378	E378del1	gAa	g-a	1	1	B.1.1.7	0.000001
N	378	E378T	GAA	ACC	1	1	B.1.1.7	0.000001
N	378	E378del2	GAA	--T	1	1	B.1.1.7	0.000001
N	378	E378Q	Gaa	Caa	1	1	B.1.103	0.019231
N	378	E378del	GAA	---	1	1	B.1.140	0.018868
N	378	E378Q	Gaa	Caa	1	1	B.1.149	0.003425
N	378	E378A	gAa	gCa	1	1	B.1.153	0.018868
N	378	E378del	GAA	---	1	1	B.1.160	0.000031
N	378	E378K	Gaa	Aaa	1	1	B.1.160.16	0.000929
N	378	E378del	GAA	---	1	1	B.1.162	0.005025
N	378	E378D	gaA	gaT	1	1	B.1.177	0.000013
N	378	E378del1	gAa	g-a	1	1	B.1.177	0.000013
N	378	E378D	gaA	gaC	1	1	B.1.177.12	0.000152
N	378	E378Q	Gaa	Caa	1	1	B.1.177.21	0.000076
N	378	E378G	gAa	gGa	1	1	B.1.177.21	0.000076
N	378	E378Q	Gaa	Caa	1	1	B.1.177.43	0.001477
N	378	E378Q	Gaa	Caa	1	1	B.1.177.45	0.000381
N	378	E378del	GAA	---	1	1	B.1.177.62	0.001192
N	378	E378G	gAA	gGC	1	1	B.1.177.63	0.002703
N	378	E378Q	Gaa	Caa	1	1	B.1.177.7	0.000165
N	378	E378Q	Gaa	Caa	1	1	B.1.177.81	0.000189
N	378	E378E	gaA	gaG	1	1	B.1.2	0.000009
N	378	E378del2	gAA	g--	1	1	B.1.2	0.000009
N	378	E378L	GAa	CTa	1	1	B.1.2	0.000009
N	378	E378Q	Gaa	Caa	1	1	B.1.222	0.001692
N	378	E378Q	Gaa	Caa	1	1	B.1.240	0.000216
N	378	E378V	gAa	gTa	1	1	B.1.240	0.000216
N	378	E378Q	Gaa	Caa	1	1	B.1.258.17	0.000104
N	378	E378G	gAa	gGa	1	1	B.1.258.7	0.001912
N	378	E378Q	Gaa	Caa	1	1	B.1.305	0.002151
N	378	E378Q	Gaa	Caa	1	1	B.1.311	0.000275
N	378	E378Q	Gaa	Caa	1	1	B.1.325	0.006897
N	378	E378Q	Gaa	Caa	1	1	B.1.36.16	0.001425
N	378	E378del	GAA	---	1	1	B.1.36.17	0.000494
N	378	E378Q	Gaa	Caa	1	1	B.1.367	0.000792
N	378	E378Q	Gaa	Caa	1	1	B.1.370	0.008
N	378	E378del	GAA	---	1	1	B.1.375	0.00082
N	378	E378Q	Gaa	Caa	1	1	B.1.396	0.000706
N	378	E378V	gAa	gTa	1	1	B.1.397	0.004854
N	378	E378Q	Gaa	Caa	1	1	B.1.406	0.006061
N	378	E378K	GaA	AaG	1	1	B.1.415	0.014286
N	378	E378del	GAA	---	1	1	B.1.416.1	0.001563
N	378	E378Q	Gaa	Caa	1	1	B.1.416.1	0.001563
N	378	E378G	gAa	gGa	1	1	B.1.420	0.010417
N	378	E378G	gAa	gGa	1	1	B.1.438.1	0.000107
N	378	E378Q	Gaa	Caa	1	1	B.1.438.1	0.000107
N	378	E378V	gAa	gTa	1	1	B.1.456	0.003268
N	378	E378Q	Gaa	Caa	1	1	B.1.462	0.007246
N	378	E378Q	Gaa	Caa	1	1	B.1.470	0.001404
N	378	E378A	gAa	gCa	1	1	B.1.497	0.000315
N	378	E378Q	Gaa	Caa	1	1	B.1.509	0.000866
N	378	E378G	gAa	gGa	1	1	B.1.525	0.000113
N	378	E378Q	Gaa	Caa	1	1	B.1.525	0.000113
N	378	E378V	gAa	gTa	1	1	B.1.525	0.000113
N	378	E378E	gaA	gaG	1	1	B.1.526	0.000024
N	378	E378del	GAA	---	1	1	B.1.526	0.000024
N	378	E378G	gAa	gGa	1	1	B.1.526	0.000024
N	378	E378Q	Gaa	Caa	1	1	B.1.560	0.00463
N	378	E378Q	Gaa	Caa	1	1	B.1.565	0.00081
N	378	E378Q	Gaa	Caa	1	1	B.1.575	0.000303
N	378	E378G	gAa	gGa	1	1	B.1.577	0.000687
N	378	E378Q	Gaa	Caa	1	1	B.1.577	0.000687
N	378	E378V	gAa	gTa	1	1	B.1.595	0.000261
N	378	E378E	gaA	gaG	1	1	B.1.599	0.00365
N	378	E378A	gAa	gCa	1	1	B.1.602	0.006536
N	378	E378D	gaA	gaT	1	1	B.1.609	0.000479
N	378	E378X	Gaa	Taa	1	1	B.1.617.1	0.000129
N	378	E378K	Gaa	Aaa	1	1	B.1.617.2	0.000004
N	378	E378V	gAA	gTT	1	1	B.1.617.2	0.000004
N	378	E378del	GAA	---	1	1	B.1.621.1	0.000506
N	378	E378X	Gaa	Taa	1	1	B.1.623	0.000536
N	378	E378del	GAA	---	1	1	B.1.628	0.000352
N	378	E378del	GAA	---	1	1	B.1.630	0.005236
N	378	E378D	gaA	gaT	1	1	B.1.637	0.000073
N	378	E378Q	Gaa	Caa	1	1	B.1.9.5	0.005682
N	378	E378X	Gaa	Taa	1	1	B.40	0.000364
N	378	E378V	gAa	gTa	1	1	C.17	0.055556
N	378	E378Q	Gaa	Caa	1	1	C.35	0.000774
N	378	E378Q	Gaa	Caa	1	1	C.36.3	0.000567
N	378	E378D	gaA	gaT	1	1	C.37	0.000116
N	378	E378X	Gaa	Taa	1	1	D.2	0.000075
N	378	E378V	gAa	gTa	1	1	D.2	0.000075
N	378	E378E	gaA	gaG	1	1	D.2	0.000075
N	378	E378D	gaA	gaC	1	1	D.2	0.000075
N	378	E378Q	Gaa	Caa	1	1	D.2	0.000075
N	378	E378D	gaA	gaT	1	1	P.1	0.000016
N	378	E378E	gaA	gaG	1	1	P.1.10	0.000269
N	378	E378E	gaA	gaG	1	1	P.1.14	0.000048
N	378	E378X	Gaa	Taa	1	1	P.1.15	0.000232
N	378	E378V	gAa	gTa	1	1	P.1.16	0.000374
N	378	E378Q	Gaa	Caa	1	1	P.1.17	0.000162
N	378	E378Q	Gaa	Caa	1	1	P.1.7	0.000319
N	378	E378G	gAa	gGa	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.