CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 376 | A376T | nonsyn | Gct | Act | 37035 | 37033 | 0.999946 | 29399-29401 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 376 | A376T | Gct | Act | 37033 | 37035 | All | 0.007083 |
N | 376 | A376T | Gct | Act | 29272 | 29272 | B.1.160 | 0.912924 |
N | 376 | A376T | Gct | Act | 1040 | 1040 | B.1.160.16 | 0.966543 |
N | 376 | A376T | Gct | Act | 770 | 770 | B.1.160.8 | 0.992268 |
N | 376 | A376T | Gct | Act | 581 | 581 | B.1.160.17 | 0.988095 |
N | 376 | A376T | Gct | Act | 472 | 472 | B.1.160.7 | 0.981289 |
N | 376 | A376T | Gct | Act | 452 | 452 | B.1.160.14 | 0.957627 |
N | 376 | A376T | Gct | Act | 398 | 398 | B.1.160.26 | 0.96368 |
N | 376 | A376T | Gct | Act | 335 | 335 | B.1.160.28 | 0.979532 |
N | 376 | A376T | Gct | Act | 239 | 239 | B.1 | 0.002189 |
N | 376 | A376T | Gct | Act | 225 | 225 | B.1.160.33 | 0.995575 |
N | 376 | A376T | Gct | Act | 224 | 224 | B.1.160.29 | 0.945148 |
N | 376 | A376T | Gct | Act | 221 | 221 | B.1.160.24 | 0.977876 |
N | 376 | A376T | Gct | Act | 206 | 206 | B.1.160.23 | 0.995169 |
N | 376 | A376T | Gct | Act | 196 | 196 | B.1.160.15 | 0.970297 |
N | 376 | A376T | Gct | Act | 196 | 196 | B.1.160.30 | 0.583333 |
N | 376 | A376T | Gct | Act | 185 | 185 | B.1.160.32 | 0.793991 |
N | 376 | A376T | Gct | Act | 170 | 170 | B.1.160.11 | 0.971429 |
N | 376 | A376T | Gct | Act | 148 | 148 | B.1.160.12 | 0.948718 |
N | 376 | A376T | Gct | Act | 141 | 141 | B.1.160.22 | 0.952703 |
N | 376 | A376T | Gct | Act | 133 | 133 | B.1.160.9 | 0.956835 |
N | 376 | A376T | Gct | Act | 131 | 131 | B.1.160.18 | 0.956204 |
N | 376 | A376T | Gct | Act | 121 | 121 | B.1.160.31 | 0.975806 |
N | 376 | A376T | Gct | Act | 118 | 118 | AB.1 | 0.967213 |
N | 376 | A376T | Gct | Act | 114 | 114 | B.1.160.10 | 0.919355 |
N | 376 | A376T | Gct | Act | 90 | 90 | B.1.160.25 | 1 |
N | 376 | A376T | Gct | Act | 82 | 82 | B.1.160.20 | 0.732143 |
N | 376 | A376T | Gct | Act | 70 | 70 | B.1.177 | 0.000922 |
N | 376 | A376T | Gct | Act | 66 | 66 | B.1.160.27 | 1 |
N | 376 | A376T | Gct | Act | 53 | 53 | B.1.221 | 0.003765 |
N | 376 | A376T | Gct | Act | 51 | 51 | AY.44 | 0.00031 |
N | 376 | A376T | Gct | Act | 46 | 46 | B.1.160.21 | 0.938776 |
N | 376 | A376T | Gct | Act | 42 | 43 | B.1.1.7 | 0.000038 |
N | 376 | A376T | Gct | Act | 35 | 35 | B.1.160.13 | 0.972222 |
N | 376 | A376T | Gct | Act | 34 | 34 | B.1.177.44 | 0.017644 |
N | 376 | A376T | Gct | Act | 30 | 30 | B.1.177.31 | 0.344828 |
N | 376 | A376T | Gct | Act | 28 | 28 | B.1.160.19 | 1 |
N | 376 | A376T | Gct | Act | 27 | 27 | B.1.1.445 | 1 |
N | 376 | A376T | Gct | Act | 24 | 24 | B.1.1 | 0.000435 |
N | 376 | A376T | Gct | Act | 19 | 19 | B.1.258.11 | 0.007531 |
N | 376 | A376T | Gct | Act | 17 | 17 | B.1.617.2 | 0.000064 |
N | 376 | A376T | Gct | Act | 14 | 14 | AY.46.5 | 0.002778 |
N | 376 | A376T | Gct | Act | 14 | 14 | B.1.1.39 | 0.007136 |
N | 376 | A376T | Gct | Act | 13 | 13 | B.1.177.73 | 0.007361 |
N | 376 | A376T | Gct | Act | 12 | 12 | AY.25 | 0.000072 |
N | 376 | A376T | Gct | Act | 12 | 12 | B.1.177.43 | 0.017725 |
N | 376 | A376T | Gct | Act | 11 | 11 | AY.14 | 0.000968 |
N | 376 | A376T | Gct | Act | 6 | 7 | B | 0.000767 |
N | 376 | A376T | Gct | Act | 7 | 7 | B.1.258 | 0.000466 |
N | 376 | A376T | Gct | Act | 6 | 6 | B.1.509 | 0.005195 |
N | 376 | A376T | Gct | Act | 5 | 5 | AY.4.4 | 0.002046 |
N | 376 | A376T | Gct | Act | 5 | 5 | B.1.473 | 0.096154 |
N | 376 | A376T | Gct | Act | 4 | 4 | AY.103 | 0.000025 |
N | 376 | A376T | Gct | Act | 4 | 4 | AY.4 | 0.000006 |
N | 376 | A376T | Gct | Act | 4 | 4 | B.1.177.81 | 0.000757 |
N | 376 | A376T | Gct | Act | 4 | 4 | B.1.222 | 0.006768 |
N | 376 | A376T | Gct | Act | 4 | 4 | B.1.260 | 0.013378 |
N | 376 | A376T | Gct | Act | 4 | 4 | B.1.561 | 0.001588 |
N | 376 | A376T | Gct | Act | 4 | 4 | P.1.14 | 0.000191 |
N | 376 | A376T | Gct | Act | 3 | 3 | AY.39 | 0.000074 |
N | 376 | A376T | Gct | Act | 3 | 3 | AY.5 | 0.000062 |
N | 376 | A376T | Gct | Act | 3 | 3 | B.1.1.70 | 0.001023 |
N | 376 | A376T | Gct | Act | 3 | 3 | B.1.36 | 0.000438 |
N | 376 | A376T | Gct | Act | 3 | 3 | B.1.36.29 | 0.001552 |
N | 376 | A376T | Gct | Act | 3 | 3 | B.1.416.1 | 0.004687 |
N | 376 | A376T | Gct | Act | 3 | 3 | B.1.609 | 0.001438 |
N | 376 | A376T | Gct | Act | 2 | 2 | AY.100 | 0.000092 |
N | 376 | A376T | Gct | Act | 2 | 2 | AY.33 | 0.000134 |
N | 376 | A376T | Gct | Act | 2 | 2 | AY.88 | 0.001768 |
N | 376 | A376T | Gct | Act | 2 | 2 | B.1.1.372 | 0.001377 |
N | 376 | A376T | Gct | Act | 2 | 2 | B.1.177.75 | 0.002081 |
N | 376 | A376T | Gct | Act | 2 | 2 | B.1.2 | 0.000018 |
N | 376 | A376T | Gct | Act | 2 | 2 | B.1.351 | 0.000059 |
N | 376 | A376T | Gct | Act | 2 | 2 | B.1.36.22 | 0.002415 |
N | 376 | A376T | Gct | Act | 2 | 2 | B.1.36.8 | 0.002 |
N | 376 | A376T | Gct | Act | 2 | 2 | B.1.409 | 0.001563 |
N | 376 | A376T | Gct | Act | 2 | 2 | B.1.465 | 0.007605 |
N | 376 | A376T | Gct | Act | 2 | 2 | B.1.474 | 0.003802 |
N | 376 | A376T | Gct | Act | 2 | 2 | B.1.533 | 0.019231 |
N | 376 | A376T | Gct | Act | 1 | 1 | A | 0.000387 |
N | 376 | A376T | Gct | Act | 1 | 1 | A.2 | 0.000662 |
N | 376 | A376T | Gct | Act | 1 | 1 | AN.1 | 0.02 |
N | 376 | A376T | Gct | Act | 1 | 1 | AY.20 | 0.000039 |
N | 376 | A376T | Gct | Act | 1 | 1 | AY.28 | 0.00189 |
N | 376 | A376T | Gct | Act | 1 | 1 | AY.29 | 0.000016 |
N | 376 | A376T | Gct | Act | 1 | 1 | AY.59 | 0.00053 |
N | 376 | A376T | Gct | Act | 1 | 1 | AY.75 | 0.000056 |
N | 376 | A376T | Gct | Act | 1 | 1 | AY.96 | 0.002075 |
N | 376 | A376T | Gct | Act | 1 | 1 | AY.98.1 | 0.000048 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.1.153 | 0.001095 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.1.207 | 0.001182 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.1.236 | 0.006897 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.1.326 | 0.001761 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.1.33 | 0.000421 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.1.343 | 0.020833 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.1.37 | 0.000193 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.1.385 | 0.004464 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.1.409 | 0.002833 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.1.521 | 0.005348 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.124 | 0.007812 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.177.23 | 0.003236 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.177.32 | 0.00135 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.177.4 | 0.000211 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.177.50 | 0.004695 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.177.62 | 0.001192 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.177.72 | 0.00339 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.177.8 | 0.000752 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.177.87 | 0.000728 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.214.2 | 0.0006 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.258.17 | 0.000104 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.268 | 0.010417 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.346 | 0.001311 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.36.1 | 0.00114 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.375 | 0.00082 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.378 | 0.006849 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.423 | 0.010204 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.429 | 0.000024 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.460 | 0.017857 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.523 | 0.002451 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.526 | 0.000024 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.567 | 0.003333 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.576 | 0.000907 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.581 | 0.009434 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.596 | 0.000087 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.629 | 0.013333 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.23 | 0.002924 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.40 | 0.000364 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.55 | 0.00295 |
N | 376 | A376T | Gct | Act | 1 | 1 | P.1 | 0.000016 |
N | 376 | A376T | Gct | Act | 1 | 1 | P.1.9 | 0.004808 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|