CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 376 | A376T | nonsyn | Gct | Act | 37035 | 37033 | 0.999946 | 29399-29401 | |
N | 376 | A376T | nonsyn | GcT | AcG | 37035 | 1 | 0.0000270015 | 29399-29401 | |
N | 376 | A376T | nonsyn | GcT | AcC | 37035 | 1 | 0.0000270015 | 29399-29401 | |
N | 376 | A376A | syn | gcT | gcC | 1286 | 1217 | 0.946345 | 29399-29401 | |
N | 376 | A376A | syn | gcT | gcA | 1286 | 63 | 0.0489891 | 29399-29401 | |
N | 376 | A376A | syn | gcT | gcG | 1286 | 6 | 0.00466563 | 29399-29401 | |
N | 376 | A376V | nonsyn | gCt | gTt | 1272 | 1272 | 1 | 29399-29401 | |
N | 376 | A376S | nonsyn | Gct | Tct | 464 | 463 | 0.997845 | 29399-29401 | |
N | 376 | A376S | nonsyn | GcT | TcA | 464 | 1 | 0.00215517 | 29399-29401 | |
N | 376 | A376del | del | GCT | --- | 99 | 99 | 1 | 29399-29401 | |
N | 376 | A376P | nonsyn | Gct | Cct | 13 | 9 | 0.692308 | 29399-29401 | |
N | 376 | A376P | nonsyn | GcT | CcA | 13 | 3 | 0.230769 | 29399-29401 | |
N | 376 | A376P | nonsyn | GcT | CcC | 13 | 1 | 0.0769231 | 29399-29401 | |
N | 376 | A376I | nonsyn | GCt | ATt | 11 | 11 | 1 | 29399-29401 | |
N | 376 | A376D | nonsyn | gCt | gAt | 6 | 6 | 1 | 29399-29401 | |
N | 376 | A376del1 | del | gcT | gc- | 3 | 3 | 1 | 29399-29401 | |
N | 376 | A376L | nonsyn | GCt | CTt | 3 | 2 | 0.666667 | 29399-29401 | |
N | 376 | A376L | nonsyn | GCT | CTC | 3 | 1 | 0.333333 | 29399-29401 | |
N | 376 | A376E | nonsyn | gCT | gAA | 2 | 2 | 1 | 29399-29401 | |
N | 376 | A376Q | nonsyn | GCT | CAA | 2 | 2 | 1 | 29399-29401 | |
N | 376 | A376del2 | del | GCT | --C | 2 | 2 | 1 | 29399-29401 | |
N | 376 | A376G | nonsyn | gCt | gGt | 1 | 1 | 1 | 29399-29401 | |
N | 376 | A376H | nonsyn | GCt | CAt | 1 | 1 | 1 | 29399-29401 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 376 | A376T | Gct | Act | 37033 | 37035 | All | 0.007083 |
N | 376 | A376T | GcT | AcG | 1 | 37035 | All | 0 |
N | 376 | A376T | GcT | AcC | 1 | 37035 | All | 0 |
N | 376 | A376T | Gct | Act | 29272 | 29272 | B.1.160 | 0.912924 |
N | 376 | A376A | gcT | gcC | 1217 | 1286 | All | 0.000233 |
N | 376 | A376A | gcT | gcA | 63 | 1286 | All | 0.000012 |
N | 376 | A376A | gcT | gcG | 6 | 1286 | All | 0.000001 |
N | 376 | A376V | gCt | gTt | 1272 | 1272 | All | 0.000243 |
N | 376 | A376T | Gct | Act | 1040 | 1040 | B.1.160.16 | 0.966543 |
N | 376 | A376T | Gct | Act | 770 | 770 | B.1.160.8 | 0.992268 |
N | 376 | A376V | gCt | gTt | 737 | 737 | B.1.2 | 0.00649 |
N | 376 | A376A | gcT | gcC | 658 | 661 | B.1.1.7 | 0.000589 |
N | 376 | A376A | gcT | gcA | 2 | 661 | B.1.1.7 | 0.000002 |
N | 376 | A376A | gcT | gcG | 1 | 661 | B.1.1.7 | 0.000001 |
N | 376 | A376T | Gct | Act | 581 | 581 | B.1.160.17 | 0.988095 |
N | 376 | A376T | Gct | Act | 472 | 472 | B.1.160.7 | 0.981289 |
N | 376 | A376S | Gct | Tct | 463 | 464 | All | 0.000089 |
N | 376 | A376S | GcT | TcA | 1 | 464 | All | 0 |
N | 376 | A376T | Gct | Act | 452 | 452 | B.1.160.14 | 0.957627 |
N | 376 | A376T | Gct | Act | 398 | 398 | B.1.160.26 | 0.96368 |
N | 376 | A376T | Gct | Act | 335 | 335 | B.1.160.28 | 0.979532 |
N | 376 | A376T | Gct | Act | 239 | 239 | B.1 | 0.002189 |
N | 376 | A376T | Gct | Act | 225 | 225 | B.1.160.33 | 0.995575 |
N | 376 | A376T | Gct | Act | 224 | 224 | B.1.160.29 | 0.945148 |
N | 376 | A376T | Gct | Act | 221 | 221 | B.1.160.24 | 0.977876 |
N | 376 | A376T | Gct | Act | 206 | 206 | B.1.160.23 | 0.995169 |
N | 376 | A376T | Gct | Act | 196 | 196 | B.1.160.15 | 0.970297 |
N | 376 | A376T | Gct | Act | 196 | 196 | B.1.160.30 | 0.583333 |
N | 376 | A376T | Gct | Act | 185 | 185 | B.1.160.32 | 0.793991 |
N | 376 | A376T | Gct | Act | 170 | 170 | B.1.160.11 | 0.971429 |
N | 376 | A376T | Gct | Act | 148 | 148 | B.1.160.12 | 0.948718 |
N | 376 | A376T | Gct | Act | 141 | 141 | B.1.160.22 | 0.952703 |
N | 376 | A376S | Gct | Tct | 138 | 138 | AY.5 | 0.00285 |
N | 376 | A376T | Gct | Act | 133 | 133 | B.1.160.9 | 0.956835 |
N | 376 | A376T | Gct | Act | 131 | 131 | B.1.160.18 | 0.956204 |
N | 376 | A376T | Gct | Act | 121 | 121 | B.1.160.31 | 0.975806 |
N | 376 | A376T | Gct | Act | 118 | 118 | AB.1 | 0.967213 |
N | 376 | A376T | Gct | Act | 114 | 114 | B.1.160.10 | 0.919355 |
N | 376 | A376A | gcT | gcC | 103 | 103 | AY.43 | 0.000456 |
N | 376 | A376del | GCT | --- | 99 | 99 | All | 0.000019 |
N | 376 | A376A | gcT | gcC | 93 | 93 | B.1.617.2 | 0.00035 |
N | 376 | A376A | gcT | gcC | 90 | 90 | AY.100 | 0.004141 |
N | 376 | A376T | Gct | Act | 90 | 90 | B.1.160.25 | 1 |
N | 376 | A376V | gCt | gTt | 85 | 85 | B.1 | 0.000779 |
N | 376 | A376T | Gct | Act | 82 | 82 | B.1.160.20 | 0.732143 |
N | 376 | A376V | gCt | gTt | 81 | 81 | AY.4 | 0.000126 |
N | 376 | A376A | gcT | gcC | 80 | 80 | B.1.306 | 0.457143 |
N | 376 | A376T | Gct | Act | 70 | 70 | B.1.177 | 0.000922 |
N | 376 | A376T | Gct | Act | 66 | 66 | B.1.160.27 | 1 |
N | 376 | A376A | gcT | gcC | 66 | 66 | B.1.177 | 0.000869 |
N | 376 | A376T | Gct | Act | 53 | 53 | B.1.221 | 0.003765 |
N | 376 | A376T | Gct | Act | 51 | 51 | AY.44 | 0.00031 |
N | 376 | A376T | Gct | Act | 46 | 46 | B.1.160.21 | 0.938776 |
N | 376 | A376S | Gct | Tct | 44 | 44 | AY.25 | 0.000265 |
N | 376 | A376V | gCt | gTt | 43 | 43 | B.1.1.7 | 0.000038 |
N | 376 | A376T | Gct | Act | 42 | 43 | B.1.1.7 | 0.000038 |
N | 376 | A376T | GcT | AcG | 1 | 43 | B.1.1.7 | 0.000001 |
N | 376 | A376S | Gct | Tct | 39 | 39 | AY.103 | 0.000242 |
N | 376 | A376S | Gct | Tct | 38 | 39 | B.1.1.7 | 0.000034 |
N | 376 | A376S | GcT | TcA | 1 | 39 | B.1.1.7 | 0.000001 |
N | 376 | A376S | Gct | Tct | 38 | 38 | B.1.617.2 | 0.000143 |
N | 376 | A376T | Gct | Act | 35 | 35 | B.1.160.13 | 0.972222 |
N | 376 | A376A | gcT | gcA | 33 | 34 | AY.44 | 0.000201 |
N | 376 | A376A | gcT | gcC | 1 | 34 | AY.44 | 0.000006 |
N | 376 | A376V | gCt | gTt | 34 | 34 | AY.98.1 | 0.001647 |
N | 376 | A376T | Gct | Act | 34 | 34 | B.1.177.44 | 0.017644 |
N | 376 | A376A | gcT | gcC | 32 | 32 | AY.4 | 0.00005 |
N | 376 | A376T | Gct | Act | 30 | 30 | B.1.177.31 | 0.344828 |
N | 376 | A376V | gCt | gTt | 28 | 28 | AY.121 | 0.003789 |
N | 376 | A376T | Gct | Act | 28 | 28 | B.1.160.19 | 1 |
N | 376 | A376T | Gct | Act | 27 | 27 | B.1.1.445 | 1 |
N | 376 | A376T | Gct | Act | 24 | 24 | B.1.1 | 0.000435 |
N | 376 | A376V | gCt | gTt | 23 | 23 | AY.103 | 0.000143 |
N | 376 | A376A | gcT | gcA | 22 | 23 | AY.4.2 | 0.000477 |
N | 376 | A376A | gcT | gcC | 1 | 23 | AY.4.2 | 0.000022 |
N | 376 | A376V | gCt | gTt | 23 | 23 | B.1.617.2 | 0.000087 |
N | 376 | A376S | Gct | Tct | 21 | 21 | AY.43 | 0.000093 |
N | 376 | A376T | Gct | Act | 19 | 19 | B.1.258.11 | 0.007531 |
N | 376 | A376V | gCt | gTt | 18 | 18 | AY.44 | 0.00011 |
N | 376 | A376del | GCT | --- | 17 | 17 | B.1.1.7 | 0.000015 |
N | 376 | A376V | gCt | gTt | 17 | 17 | B.1.596 | 0.001481 |
N | 376 | A376T | Gct | Act | 17 | 17 | B.1.617.2 | 0.000064 |
N | 376 | A376V | gCt | gTt | 15 | 15 | AY.120 | 0.000558 |
N | 376 | A376S | Gct | Tct | 15 | 15 | AY.4 | 0.000023 |
N | 376 | A376S | Gct | Tct | 15 | 15 | AY.9 | 0.001014 |
N | 376 | A376V | gCt | gTt | 15 | 15 | P.1 | 0.000236 |
N | 376 | A376T | Gct | Act | 14 | 14 | AY.46.5 | 0.002778 |
N | 376 | A376T | Gct | Act | 14 | 14 | B.1.1.39 | 0.007136 |
N | 376 | A376P | Gct | Cct | 9 | 13 | All | 0.000002 |
N | 376 | A376P | GcT | CcA | 3 | 13 | All | 0.000001 |
N | 376 | A376P | GcT | CcC | 1 | 13 | All | 0 |
N | 376 | A376S | Gct | Tct | 13 | 13 | AY.88 | 0.011494 |
N | 376 | A376T | Gct | Act | 13 | 13 | B.1.177.73 | 0.007361 |
N | 376 | A376V | gCt | gTt | 12 | 12 | AY.102 | 0.000318 |
N | 376 | A376T | Gct | Act | 12 | 12 | AY.25 | 0.000072 |
N | 376 | A376T | Gct | Act | 12 | 12 | B.1.177.43 | 0.017725 |
N | 376 | A376I | GCt | ATt | 11 | 11 | All | 0.000002 |
N | 376 | A376T | Gct | Act | 11 | 11 | AY.14 | 0.000968 |
N | 376 | A376V | gCt | gTt | 10 | 10 | AY.26 | 0.000283 |
N | 376 | A376I | GCt | ATt | 10 | 10 | B.1.160 | 0.000312 |
N | 376 | A376A | gcT | gcC | 10 | 10 | Q.1 | 0.001263 |
N | 376 | A376V | gCt | gTt | 9 | 9 | AY.41 | 0.002646 |
N | 376 | A376A | gcT | gcC | 8 | 8 | A | 0.003096 |
N | 376 | A376S | Gct | Tct | 8 | 8 | AY.3 | 0.00008 |
N | 376 | A376V | gCt | gTt | 8 | 8 | B.1.36.29 | 0.004139 |
N | 376 | A376S | Gct | Tct | 7 | 7 | AY.39 | 0.000173 |
N | 376 | A376del | GCT | --- | 7 | 7 | AY.4 | 0.000011 |
N | 376 | A376S | Gct | Tct | 7 | 7 | AY.67 | 0.00325 |
N | 376 | A376T | Gct | Act | 6 | 7 | B | 0.000767 |
N | 376 | A376T | GcT | AcC | 1 | 7 | B | 0.000128 |
N | 376 | A376del | GCT | --- | 7 | 7 | B.1 | 0.000064 |
N | 376 | A376S | Gct | Tct | 7 | 7 | B.1 | 0.000064 |
N | 376 | A376T | Gct | Act | 7 | 7 | B.1.258 | 0.000466 |
N | 376 | A376V | gCt | gTt | 7 | 7 | B.1.526 | 0.000165 |
N | 376 | A376D | gCt | gAt | 6 | 6 | All | 0.000001 |
N | 376 | A376S | Gct | Tct | 6 | 6 | AY.102 | 0.000159 |
N | 376 | A376V | gCt | gTt | 6 | 6 | B.1.1 | 0.000109 |
N | 376 | A376V | gCt | gTt | 6 | 6 | B.1.1.214 | 0.000333 |
N | 376 | A376V | gCt | gTt | 6 | 6 | B.1.351 | 0.000178 |
N | 376 | A376A | gcT | gcC | 6 | 6 | B.1.427 | 0.000303 |
N | 376 | A376T | Gct | Act | 6 | 6 | B.1.509 | 0.005195 |
N | 376 | A376del | GCT | --- | 6 | 6 | C.37 | 0.000696 |
N | 376 | A376A | gcT | gcC | 6 | 6 | P.1.16 | 0.002245 |
N | 376 | A376A | gcT | gcC | 5 | 5 | AY.102 | 0.000133 |
N | 376 | A376T | Gct | Act | 5 | 5 | AY.4.4 | 0.002046 |
N | 376 | A376V | gCt | gTt | 5 | 5 | AY.43 | 0.000022 |
N | 376 | A376A | gcT | gcC | 5 | 5 | B.1 | 0.000046 |
N | 376 | A376T | Gct | Act | 5 | 5 | B.1.473 | 0.096154 |
N | 376 | A376V | gCt | gTt | 5 | 5 | B.1.78 | 0.042735 |
N | 376 | A376S | Gct | Tct | 4 | 4 | AE.8 | 0.001956 |
N | 376 | A376T | Gct | Act | 4 | 4 | AY.103 | 0.000025 |
N | 376 | A376A | gcT | gcC | 4 | 4 | AY.119 | 0.000141 |
N | 376 | A376del | GCT | --- | 4 | 4 | AY.25 | 0.000024 |
N | 376 | A376V | gCt | gTt | 4 | 4 | AY.25 | 0.000024 |
N | 376 | A376T | Gct | Act | 4 | 4 | AY.4 | 0.000006 |
N | 376 | A376S | Gct | Tct | 4 | 4 | AY.44 | 0.000024 |
N | 376 | A376A | gcT | gcC | 4 | 4 | AY.46 | 0.000416 |
N | 376 | A376del | GCT | --- | 4 | 4 | B.1.1 | 0.000073 |
N | 376 | A376A | gcT | gcC | 4 | 4 | B.1.1 | 0.000073 |
N | 376 | A376P | Gct | Cct | 2 | 4 | B.1.1.7 | 0.000002 |
N | 376 | A376P | GcT | CcC | 1 | 4 | B.1.1.7 | 0.000001 |
N | 376 | A376P | GcT | CcA | 1 | 4 | B.1.1.7 | 0.000001 |
N | 376 | A376V | gCt | gTt | 4 | 4 | B.1.177 | 0.000053 |
N | 376 | A376T | Gct | Act | 4 | 4 | B.1.177.81 | 0.000757 |
N | 376 | A376del | GCT | --- | 4 | 4 | B.1.2 | 0.000035 |
N | 376 | A376T | Gct | Act | 4 | 4 | B.1.222 | 0.006768 |
N | 376 | A376T | Gct | Act | 4 | 4 | B.1.260 | 0.013378 |
N | 376 | A376S | Gct | Tct | 4 | 4 | B.1.429 | 0.000094 |
N | 376 | A376T | Gct | Act | 4 | 4 | B.1.561 | 0.001588 |
N | 376 | A376A | gcT | gcC | 4 | 4 | P.1 | 0.000063 |
N | 376 | A376T | Gct | Act | 4 | 4 | P.1.14 | 0.000191 |
N | 376 | A376del1 | gcT | gc- | 3 | 3 | All | 0.000001 |
N | 376 | A376L | GCt | CTt | 2 | 3 | All | 0 |
N | 376 | A376L | GCT | CTC | 1 | 3 | All | 0 |
N | 376 | A376A | gcT | gcC | 3 | 3 | AY.117 | 0.000254 |
N | 376 | A376S | Gct | Tct | 3 | 3 | AY.119 | 0.000106 |
N | 376 | A376S | Gct | Tct | 3 | 3 | AY.29 | 0.000047 |
N | 376 | A376A | gcT | gcC | 3 | 3 | AY.3 | 0.00003 |
N | 376 | A376T | Gct | Act | 3 | 3 | AY.39 | 0.000074 |
N | 376 | A376V | gCt | gTt | 3 | 3 | AY.45 | 0.000365 |
N | 376 | A376T | Gct | Act | 3 | 3 | AY.5 | 0.000062 |
N | 376 | A376V | gCt | gTt | 3 | 3 | B.1.1.5 | 0.025 |
N | 376 | A376V | gCt | gTt | 3 | 3 | B.1.1.526 | 0.010638 |
N | 376 | A376T | Gct | Act | 3 | 3 | B.1.1.70 | 0.001023 |
N | 376 | A376del | GCT | --- | 3 | 3 | B.1.160 | 0.000094 |
N | 376 | A376del | GCT | --- | 3 | 3 | B.1.177 | 0.00004 |
N | 376 | A376V | gCt | gTt | 3 | 3 | B.1.177.81 | 0.000568 |
N | 376 | A376S | Gct | Tct | 3 | 3 | B.1.2 | 0.000026 |
N | 376 | A376S | Gct | Tct | 3 | 3 | B.1.351 | 0.000089 |
N | 376 | A376A | gcT | gcC | 3 | 3 | B.1.356 | 0.005181 |
N | 376 | A376T | Gct | Act | 3 | 3 | B.1.36 | 0.000438 |
N | 376 | A376T | Gct | Act | 3 | 3 | B.1.36.29 | 0.001552 |
N | 376 | A376T | Gct | Act | 3 | 3 | B.1.416.1 | 0.004687 |
N | 376 | A376T | Gct | Act | 3 | 3 | B.1.609 | 0.001438 |
N | 376 | A376V | gCt | gTt | 3 | 3 | C.37 | 0.000348 |
N | 376 | A376del | GCT | --- | 2 | 2 | 0.111111 | |
N | 376 | A376A | gcT | gcA | 2 | 2 | 0.111111 | |
N | 376 | A376E | gCT | gAA | 2 | 2 | 0.111111 | |
N | 376 | A376Q | GCT | CAA | 2 | 2 | 0.111111 | |
N | 376 | A376P | GcT | CcA | 2 | 2 | 0.111111 | |
N | 376 | A376E | gCT | gAA | 2 | 2 | All | 0 |
N | 376 | A376Q | GCT | CAA | 2 | 2 | All | 0 |
N | 376 | A376del2 | GCT | --C | 2 | 2 | All | 0 |
N | 376 | A376T | Gct | Act | 2 | 2 | AY.100 | 0.000092 |
N | 376 | A376del | GCT | --- | 2 | 2 | AY.103 | 0.000012 |
N | 376 | A376D | gCt | gAt | 2 | 2 | AY.103 | 0.000012 |
N | 376 | A376S | Gct | Tct | 2 | 2 | AY.113 | 0.000285 |
N | 376 | A376V | gCt | gTt | 2 | 2 | AY.2 | 0.000712 |
N | 376 | A376A | gcT | gcC | 2 | 2 | AY.25 | 0.000012 |
N | 376 | A376del | GCT | --- | 2 | 2 | AY.26 | 0.000057 |
N | 376 | A376V | gCt | gTt | 2 | 2 | AY.3 | 0.00002 |
N | 376 | A376A | gcT | gcC | 2 | 2 | AY.3.1 | 0.000171 |
N | 376 | A376T | Gct | Act | 2 | 2 | AY.33 | 0.000134 |
N | 376 | A376V | gCt | gTt | 2 | 2 | AY.4.2 | 0.000043 |
N | 376 | A376S | Gct | Tct | 2 | 2 | AY.41 | 0.000588 |
N | 376 | A376S | Gct | Tct | 2 | 2 | AY.47 | 0.000062 |
N | 376 | A376V | gCt | gTt | 2 | 2 | AY.5 | 0.000041 |
N | 376 | A376V | gCt | gTt | 2 | 2 | AY.61 | 0.00021 |
N | 376 | A376V | gCt | gTt | 2 | 2 | AY.75 | 0.000112 |
N | 376 | A376T | Gct | Act | 2 | 2 | AY.88 | 0.001768 |
N | 376 | A376S | Gct | Tct | 2 | 2 | B.1.1.216 | 0.001781 |
N | 376 | A376del1 | gcT | gc- | 2 | 2 | B.1.1.288 | 0.003831 |
N | 376 | A376T | Gct | Act | 2 | 2 | B.1.1.372 | 0.001377 |
N | 376 | A376V | gCt | gTt | 2 | 2 | B.1.1.432 | 0.002532 |
N | 376 | A376V | gCt | gTt | 2 | 2 | B.1.1.434 | 0.000697 |
N | 376 | A376T | Gct | Act | 2 | 2 | B.1.177.75 | 0.002081 |
N | 376 | A376T | Gct | Act | 2 | 2 | B.1.2 | 0.000018 |
N | 376 | A376S | Gct | Tct | 2 | 2 | B.1.22 | 0.002635 |
N | 376 | A376V | gCt | gTt | 2 | 2 | B.1.243 | 0.000139 |
N | 376 | A376T | Gct | Act | 2 | 2 | B.1.351 | 0.000059 |
N | 376 | A376T | Gct | Act | 2 | 2 | B.1.36.22 | 0.002415 |
N | 376 | A376T | Gct | Act | 2 | 2 | B.1.36.8 | 0.002 |
N | 376 | A376A | gcT | gcC | 2 | 2 | B.1.362 | 0.003082 |
N | 376 | A376T | Gct | Act | 2 | 2 | B.1.409 | 0.001563 |
N | 376 | A376T | Gct | Act | 2 | 2 | B.1.465 | 0.007605 |
N | 376 | A376T | Gct | Act | 2 | 2 | B.1.474 | 0.003802 |
N | 376 | A376A | gcT | gcG | 2 | 2 | B.1.497 | 0.00063 |
N | 376 | A376S | Gct | Tct | 2 | 2 | B.1.526 | 0.000047 |
N | 376 | A376T | Gct | Act | 2 | 2 | B.1.533 | 0.019231 |
N | 376 | A376del | GCT | --- | 2 | 2 | B.1.617.2 | 0.000008 |
N | 376 | A376D | gCt | gAt | 2 | 2 | B.1.617.2 | 0.000008 |
N | 376 | A376V | gCt | gTt | 2 | 2 | B.1.621 | 0.000177 |
N | 376 | A376V | gCt | gTt | 2 | 2 | C.36.3 | 0.001134 |
N | 376 | A376del | GCT | --- | 2 | 2 | P.1 | 0.000032 |
N | 376 | A376A | gcT | gcC | 2 | 2 | P.2 | 0.000373 |
N | 376 | A376S | Gct | Tct | 2 | 2 | P.2 | 0.000373 |
N | 376 | A376del | GCT | --- | 2 | 2 | Q.1 | 0.000253 |
N | 376 | A376T | Gct | Act | 1 | 1 | A | 0.000387 |
N | 376 | A376T | Gct | Act | 1 | 1 | A.2 | 0.000662 |
N | 376 | A376V | gCt | gTt | 1 | 1 | A.2.5 | 0.000499 |
N | 376 | A376H | GCt | CAt | 1 | 1 | All | 0 |
N | 376 | A376G | gCt | gGt | 1 | 1 | All | 0 |
N | 376 | A376T | Gct | Act | 1 | 1 | AN.1 | 0.02 |
N | 376 | A376V | gCt | gTt | 1 | 1 | AY.10 | 0.00053 |
N | 376 | A376V | gCt | gTt | 1 | 1 | AY.100 | 0.000046 |
N | 376 | A376del | GCT | --- | 1 | 1 | AY.101 | 0.00049 |
N | 376 | A376del | GCT | --- | 1 | 1 | AY.102 | 0.000027 |
N | 376 | A376A | gcT | gcA | 1 | 1 | AY.103 | 0.000006 |
N | 376 | A376S | Gct | Tct | 1 | 1 | AY.105 | 0.000643 |
N | 376 | A376P | Gct | Cct | 1 | 1 | AY.110 | 0.000113 |
N | 376 | A376V | gCt | gTt | 1 | 1 | AY.110 | 0.000113 |
N | 376 | A376del | GCT | --- | 1 | 1 | AY.114 | 0.000231 |
N | 376 | A376A | gcT | gcC | 1 | 1 | AY.114 | 0.000231 |
N | 376 | A376A | gcT | gcC | 1 | 1 | AY.116 | 0.000287 |
N | 376 | A376S | Gct | Tct | 1 | 1 | AY.117 | 0.000085 |
N | 376 | A376P | Gct | Cct | 1 | 1 | AY.119 | 0.000035 |
N | 376 | A376del | GCT | --- | 1 | 1 | AY.119 | 0.000035 |
N | 376 | A376A | gcT | gcC | 1 | 1 | AY.120 | 0.000037 |
N | 376 | A376S | Gct | Tct | 1 | 1 | AY.120 | 0.000037 |
N | 376 | A376del2 | GCT | --C | 1 | 1 | AY.120.1 | 0.000321 |
N | 376 | A376S | Gct | Tct | 1 | 1 | AY.120.2 | 0.001285 |
N | 376 | A376T | Gct | Act | 1 | 1 | AY.20 | 0.000039 |
N | 376 | A376S | Gct | Tct | 1 | 1 | AY.23 | 0.00007 |
N | 376 | A376S | Gct | Tct | 1 | 1 | AY.26 | 0.000028 |
N | 376 | A376A | gcT | gcC | 1 | 1 | AY.26 | 0.000028 |
N | 376 | A376V | gCt | gTt | 1 | 1 | AY.27 | 0.000065 |
N | 376 | A376T | Gct | Act | 1 | 1 | AY.28 | 0.00189 |
N | 376 | A376T | Gct | Act | 1 | 1 | AY.29 | 0.000016 |
N | 376 | A376D | gCt | gAt | 1 | 1 | AY.3 | 0.00001 |
N | 376 | A376A | gcT | gcC | 1 | 1 | AY.30 | 0.000396 |
N | 376 | A376A | gcT | gcC | 1 | 1 | AY.32 | 0.000532 |
N | 376 | A376del | GCT | --- | 1 | 1 | AY.34 | 0.000097 |
N | 376 | A376A | gcT | gcC | 1 | 1 | AY.36 | 0.000148 |
N | 376 | A376V | gCt | gTt | 1 | 1 | AY.36 | 0.000148 |
N | 376 | A376del | GCT | --- | 1 | 1 | AY.39 | 0.000025 |
N | 376 | A376V | gCt | gTt | 1 | 1 | AY.39 | 0.000025 |
N | 376 | A376V | gCt | gTt | 1 | 1 | AY.40 | 0.000964 |
N | 376 | A376del | GCT | --- | 1 | 1 | AY.43 | 0.000004 |
N | 376 | A376L | GCt | CTt | 1 | 1 | AY.43 | 0.000004 |
N | 376 | A376del | GCT | --- | 1 | 1 | AY.44 | 0.000006 |
N | 376 | A376S | Gct | Tct | 1 | 1 | AY.45 | 0.000122 |
N | 376 | A376S | Gct | Tct | 1 | 1 | AY.46 | 0.000104 |
N | 376 | A376A | gcT | gcC | 1 | 1 | AY.46.4 | 0.000165 |
N | 376 | A376del | GCT | --- | 1 | 1 | AY.5 | 0.000021 |
N | 376 | A376S | Gct | Tct | 1 | 1 | AY.5.4 | 0.000277 |
N | 376 | A376S | Gct | Tct | 1 | 1 | AY.54 | 0.000095 |
N | 376 | A376T | Gct | Act | 1 | 1 | AY.59 | 0.00053 |
N | 376 | A376A | gcT | gcC | 1 | 1 | AY.62 | 0.000436 |
N | 376 | A376del | GCT | --- | 1 | 1 | AY.62 | 0.000436 |
N | 376 | A376del | GCT | --- | 1 | 1 | AY.67 | 0.000464 |
N | 376 | A376A | gcT | gcG | 1 | 1 | AY.69 | 0.000187 |
N | 376 | A376A | gcT | gcC | 1 | 1 | AY.74 | 0.000116 |
N | 376 | A376A | gcT | gcC | 1 | 1 | AY.75 | 0.000056 |
N | 376 | A376T | Gct | Act | 1 | 1 | AY.75 | 0.000056 |
N | 376 | A376V | gCt | gTt | 1 | 1 | AY.75.1 | 0.00018 |
N | 376 | A376P | Gct | Cct | 1 | 1 | AY.79 | 0.001211 |
N | 376 | A376del | GCT | --- | 1 | 1 | AY.84 | 0.000437 |
N | 376 | A376S | Gct | Tct | 1 | 1 | AY.9.1 | 0.000084 |
N | 376 | A376del | GCT | --- | 1 | 1 | AY.90 | 0.000684 |
N | 376 | A376T | Gct | Act | 1 | 1 | AY.96 | 0.002075 |
N | 376 | A376T | Gct | Act | 1 | 1 | AY.98.1 | 0.000048 |
N | 376 | A376S | Gct | Tct | 1 | 1 | AY.99 | 0.001049 |
N | 376 | A376V | gCt | gTt | 1 | 1 | AY.99.2 | 0.000092 |
N | 376 | A376S | Gct | Tct | 1 | 1 | AY.99.2 | 0.000092 |
N | 376 | A376L | GCT | CTC | 1 | 1 | B.1.1 | 0.000018 |
N | 376 | A376del | GCT | --- | 1 | 1 | B.1.1.139 | 0.022727 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.1.153 | 0.001095 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.1.207 | 0.001182 |
N | 376 | A376A | gcT | gcC | 1 | 1 | B.1.1.214 | 0.000055 |
N | 376 | A376del | GCT | --- | 1 | 1 | B.1.1.236 | 0.006897 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.1.236 | 0.006897 |
N | 376 | A376I | GCt | ATt | 1 | 1 | B.1.1.27 | 0.00565 |
N | 376 | A376V | gCt | gTt | 1 | 1 | B.1.1.277 | 0.000759 |
N | 376 | A376V | gCt | gTt | 1 | 1 | B.1.1.305 | 0.003861 |
N | 376 | A376A | gcT | gcC | 1 | 1 | B.1.1.311 | 0.000358 |
N | 376 | A376S | Gct | Tct | 1 | 1 | B.1.1.316 | 0.000925 |
N | 376 | A376A | gcT | gcA | 1 | 1 | B.1.1.324 | 0.052632 |
N | 376 | A376A | gcT | gcG | 1 | 1 | B.1.1.326 | 0.001761 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.1.326 | 0.001761 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.1.33 | 0.000421 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.1.343 | 0.020833 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.1.37 | 0.000193 |
N | 376 | A376del | GCT | --- | 1 | 1 | B.1.1.37 | 0.000193 |
N | 376 | A376A | gcT | gcC | 1 | 1 | B.1.1.372 | 0.000689 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.1.385 | 0.004464 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.1.409 | 0.002833 |
N | 376 | A376S | Gct | Tct | 1 | 1 | B.1.1.519 | 0.00004 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.1.521 | 0.005348 |
N | 376 | A376S | Gct | Tct | 1 | 1 | B.1.1.54 | 0.003021 |
N | 376 | A376V | gCt | gTt | 1 | 1 | B.1.1.54 | 0.003021 |
N | 376 | A376V | gCt | gTt | 1 | 1 | B.1.1.63 | 0.000386 |
N | 376 | A376G | gCt | gGt | 1 | 1 | B.1.1.7 | 0.000001 |
N | 376 | A376H | GCt | CAt | 1 | 1 | B.1.1.7 | 0.000001 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.124 | 0.007812 |
N | 376 | A376P | Gct | Cct | 1 | 1 | B.1.13 | 0.002375 |
N | 376 | A376del | GCT | --- | 1 | 1 | B.1.140 | 0.018868 |
N | 376 | A376del | GCT | --- | 1 | 1 | B.1.162 | 0.005025 |
N | 376 | A376S | Gct | Tct | 1 | 1 | B.1.177 | 0.000013 |
N | 376 | A376D | gCt | gAt | 1 | 1 | B.1.177 | 0.000013 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.177.23 | 0.003236 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.177.32 | 0.00135 |
N | 376 | A376S | Gct | Tct | 1 | 1 | B.1.177.35 | 0.000691 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.177.4 | 0.000211 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.177.50 | 0.004695 |
N | 376 | A376V | gCt | gTt | 1 | 1 | B.1.177.54 | 0.000606 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.177.62 | 0.001192 |
N | 376 | A376del | GCT | --- | 1 | 1 | B.1.177.62 | 0.001192 |
N | 376 | A376V | gCt | gTt | 1 | 1 | B.1.177.63 | 0.002703 |
N | 376 | A376del | GCT | --- | 1 | 1 | B.1.177.7 | 0.000165 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.177.72 | 0.00339 |
N | 376 | A376V | gCt | gTt | 1 | 1 | B.1.177.73 | 0.000566 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.177.8 | 0.000752 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.177.87 | 0.000728 |
N | 376 | A376A | gcT | gcC | 1 | 1 | B.1.2 | 0.000009 |
N | 376 | A376A | gcT | gcC | 1 | 1 | B.1.210 | 0.002132 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.214.2 | 0.0006 |
N | 376 | A376P | Gct | Cct | 1 | 1 | B.1.221.3 | 0.000833 |
N | 376 | A376V | gCt | gTt | 1 | 1 | B.1.234 | 0.000132 |
N | 376 | A376del | GCT | --- | 1 | 1 | B.1.236 | 0.002053 |
N | 376 | A376P | Gct | Cct | 1 | 1 | B.1.243 | 0.00007 |
N | 376 | A376V | gCt | gTt | 1 | 1 | B.1.258 | 0.000067 |
N | 376 | A376S | Gct | Tct | 1 | 1 | B.1.258 | 0.000067 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.258.17 | 0.000104 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.268 | 0.010417 |
N | 376 | A376V | gCt | gTt | 1 | 1 | B.1.279 | 0.000514 |
N | 376 | A376A | gcT | gcC | 1 | 1 | B.1.324 | 0.001605 |
N | 376 | A376V | gCt | gTt | 1 | 1 | B.1.325 | 0.006897 |
N | 376 | A376S | Gct | Tct | 1 | 1 | B.1.338 | 0.008621 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.346 | 0.001311 |
N | 376 | A376A | gcT | gcC | 1 | 1 | B.1.351 | 0.00003 |
N | 376 | A376S | Gct | Tct | 1 | 1 | B.1.354 | 0.043478 |
N | 376 | A376A | gcT | gcC | 1 | 1 | B.1.36 | 0.000146 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.36.1 | 0.00114 |
N | 376 | A376V | gCt | gTt | 1 | 1 | B.1.36.1 | 0.00114 |
N | 376 | A376del | GCT | --- | 1 | 1 | B.1.36.17 | 0.000494 |
N | 376 | A376V | gCt | gTt | 1 | 1 | B.1.367 | 0.000792 |
N | 376 | A376V | gCt | gTt | 1 | 1 | B.1.370 | 0.008 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.375 | 0.00082 |
N | 376 | A376del | GCT | --- | 1 | 1 | B.1.375 | 0.00082 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.378 | 0.006849 |
N | 376 | A376A | gcT | gcG | 1 | 1 | B.1.389 | 0.001002 |
N | 376 | A376V | gCt | gTt | 1 | 1 | B.1.396 | 0.000706 |
N | 376 | A376S | Gct | Tct | 1 | 1 | B.1.399 | 0.001934 |
N | 376 | A376V | gCt | gTt | 1 | 1 | B.1.408 | 0.00369 |
N | 376 | A376del | GCT | --- | 1 | 1 | B.1.415 | 0.014286 |
N | 376 | A376del | GCT | --- | 1 | 1 | B.1.416.1 | 0.001563 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.423 | 0.010204 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.429 | 0.000024 |
N | 376 | A376V | gCt | gTt | 1 | 1 | B.1.429 | 0.000024 |
N | 376 | A376A | gcT | gcA | 1 | 1 | B.1.429 | 0.000024 |
N | 376 | A376del | GCT | --- | 1 | 1 | B.1.438.1 | 0.000107 |
N | 376 | A376S | Gct | Tct | 1 | 1 | B.1.438.1 | 0.000107 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.460 | 0.017857 |
N | 376 | A376S | Gct | Tct | 1 | 1 | B.1.517 | 0.000427 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.523 | 0.002451 |
N | 376 | A376del1 | gcT | gc- | 1 | 1 | B.1.524 | 0.001406 |
N | 376 | A376V | gCt | gTt | 1 | 1 | B.1.525 | 0.000113 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.526 | 0.000024 |
N | 376 | A376del | GCT | --- | 1 | 1 | B.1.526 | 0.000024 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.567 | 0.003333 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.576 | 0.000907 |
N | 376 | A376S | Gct | Tct | 1 | 1 | B.1.576 | 0.000907 |
N | 376 | A376V | gCt | gTt | 1 | 1 | B.1.576 | 0.000907 |
N | 376 | A376A | gcT | gcC | 1 | 1 | B.1.577 | 0.000687 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.581 | 0.009434 |
N | 376 | A376S | Gct | Tct | 1 | 1 | B.1.588 | 0.00091 |
N | 376 | A376V | gCt | gTt | 1 | 1 | B.1.595 | 0.000261 |
N | 376 | A376P | Gct | Cct | 1 | 1 | B.1.595 | 0.000261 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.596 | 0.000087 |
N | 376 | A376S | Gct | Tct | 1 | 1 | B.1.596 | 0.000087 |
N | 376 | A376S | Gct | Tct | 1 | 1 | B.1.597 | 0.00463 |
N | 376 | A376S | Gct | Tct | 1 | 1 | B.1.609 | 0.000479 |
N | 376 | A376A | gcT | gcA | 1 | 1 | B.1.612 | 0.002653 |
N | 376 | A376del | GCT | --- | 1 | 1 | B.1.617.1 | 0.000129 |
N | 376 | A376V | gCt | gTt | 1 | 1 | B.1.617.1 | 0.000129 |
N | 376 | A376L | GCt | CTt | 1 | 1 | B.1.617.2 | 0.000004 |
N | 376 | A376del2 | GCT | --C | 1 | 1 | B.1.617.2 | 0.000004 |
N | 376 | A376del | GCT | --- | 1 | 1 | B.1.621.1 | 0.000506 |
N | 376 | A376del | GCT | --- | 1 | 1 | B.1.628 | 0.000352 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.1.629 | 0.013333 |
N | 376 | A376del | GCT | --- | 1 | 1 | B.1.630 | 0.005236 |
N | 376 | A376V | gCt | gTt | 1 | 1 | B.1.637 | 0.000073 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.23 | 0.002924 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.40 | 0.000364 |
N | 376 | A376T | Gct | Act | 1 | 1 | B.55 | 0.00295 |
N | 376 | A376V | gCt | gTt | 1 | 1 | B.55 | 0.00295 |
N | 376 | A376T | Gct | Act | 1 | 1 | P.1 | 0.000016 |
N | 376 | A376T | Gct | Act | 1 | 1 | P.1.9 | 0.004808 |
N | 376 | A376del | GCT | --- | 1 | 1 | Q.7 | 0.001111 |
N | 376 | A376V | gCt | gTt | 1 | 1 | Q.7 | 0.001111 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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