CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 376

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N376A376TnonsynGctAct37035370330.99994629399-29401
N376A376TnonsynGcTAcG3703510.000027001529399-29401
N376A376TnonsynGcTAcC3703510.000027001529399-29401
N376A376AsyngcTgcC128612170.94634529399-29401
N376A376AsyngcTgcA1286630.048989129399-29401
N376A376AsyngcTgcG128660.0046656329399-29401
N376A376VnonsyngCtgTt12721272129399-29401
N376A376SnonsynGctTct4644630.99784529399-29401
N376A376SnonsynGcTTcA46410.0021551729399-29401
N376A376deldelGCT---9999129399-29401
N376A376PnonsynGctCct1390.69230829399-29401
N376A376PnonsynGcTCcA1330.23076929399-29401
N376A376PnonsynGcTCcC1310.076923129399-29401
N376A376InonsynGCtATt1111129399-29401
N376A376DnonsyngCtgAt66129399-29401
N376A376del1delgcTgc-33129399-29401
N376A376LnonsynGCtCTt320.66666729399-29401
N376A376LnonsynGCTCTC310.33333329399-29401
N376A376EnonsyngCTgAA22129399-29401
N376A376QnonsynGCTCAA22129399-29401
N376A376del2delGCT--C22129399-29401
N376A376GnonsyngCtgGt11129399-29401
N376A376HnonsynGCtCAt11129399-29401

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N376A376TGctAct3703337035All0.007083
N376A376TGcTAcG137035All0
N376A376TGcTAcC137035All0
N376A376TGctAct2927229272B.1.1600.912924
N376A376AgcTgcC12171286All0.000233
N376A376AgcTgcA631286All0.000012
N376A376AgcTgcG61286All0.000001
N376A376VgCtgTt12721272All0.000243
N376A376TGctAct10401040B.1.160.160.966543
N376A376TGctAct770770B.1.160.80.992268
N376A376VgCtgTt737737B.1.20.00649
N376A376AgcTgcC658661B.1.1.70.000589
N376A376AgcTgcA2661B.1.1.70.000002
N376A376AgcTgcG1661B.1.1.70.000001
N376A376TGctAct581581B.1.160.170.988095
N376A376TGctAct472472B.1.160.70.981289
N376A376SGctTct463464All0.000089
N376A376SGcTTcA1464All0
N376A376TGctAct452452B.1.160.140.957627
N376A376TGctAct398398B.1.160.260.96368
N376A376TGctAct335335B.1.160.280.979532
N376A376TGctAct239239B.10.002189
N376A376TGctAct225225B.1.160.330.995575
N376A376TGctAct224224B.1.160.290.945148
N376A376TGctAct221221B.1.160.240.977876
N376A376TGctAct206206B.1.160.230.995169
N376A376TGctAct196196B.1.160.150.970297
N376A376TGctAct196196B.1.160.300.583333
N376A376TGctAct185185B.1.160.320.793991
N376A376TGctAct170170B.1.160.110.971429
N376A376TGctAct148148B.1.160.120.948718
N376A376TGctAct141141B.1.160.220.952703
N376A376SGctTct138138AY.50.00285
N376A376TGctAct133133B.1.160.90.956835
N376A376TGctAct131131B.1.160.180.956204
N376A376TGctAct121121B.1.160.310.975806
N376A376TGctAct118118AB.10.967213
N376A376TGctAct114114B.1.160.100.919355
N376A376AgcTgcC103103AY.430.000456
N376A376delGCT---9999All0.000019
N376A376AgcTgcC9393B.1.617.20.00035
N376A376AgcTgcC9090AY.1000.004141
N376A376TGctAct9090B.1.160.251
N376A376VgCtgTt8585B.10.000779
N376A376TGctAct8282B.1.160.200.732143
N376A376VgCtgTt8181AY.40.000126
N376A376AgcTgcC8080B.1.3060.457143
N376A376TGctAct7070B.1.1770.000922
N376A376TGctAct6666B.1.160.271
N376A376AgcTgcC6666B.1.1770.000869
N376A376TGctAct5353B.1.2210.003765
N376A376TGctAct5151AY.440.00031
N376A376TGctAct4646B.1.160.210.938776
N376A376SGctTct4444AY.250.000265
N376A376VgCtgTt4343B.1.1.70.000038
N376A376TGctAct4243B.1.1.70.000038
N376A376TGcTAcG143B.1.1.70.000001
N376A376SGctTct3939AY.1030.000242
N376A376SGctTct3839B.1.1.70.000034
N376A376SGcTTcA139B.1.1.70.000001
N376A376SGctTct3838B.1.617.20.000143
N376A376TGctAct3535B.1.160.130.972222
N376A376AgcTgcA3334AY.440.000201
N376A376AgcTgcC134AY.440.000006
N376A376VgCtgTt3434AY.98.10.001647
N376A376TGctAct3434B.1.177.440.017644
N376A376AgcTgcC3232AY.40.00005
N376A376TGctAct3030B.1.177.310.344828
N376A376VgCtgTt2828AY.1210.003789
N376A376TGctAct2828B.1.160.191
N376A376TGctAct2727B.1.1.4451
N376A376TGctAct2424B.1.10.000435
N376A376VgCtgTt2323AY.1030.000143
N376A376AgcTgcA2223AY.4.20.000477
N376A376AgcTgcC123AY.4.20.000022
N376A376VgCtgTt2323B.1.617.20.000087
N376A376SGctTct2121AY.430.000093
N376A376TGctAct1919B.1.258.110.007531
N376A376VgCtgTt1818AY.440.00011
N376A376delGCT---1717B.1.1.70.000015
N376A376VgCtgTt1717B.1.5960.001481
N376A376TGctAct1717B.1.617.20.000064
N376A376VgCtgTt1515AY.1200.000558
N376A376SGctTct1515AY.40.000023
N376A376SGctTct1515AY.90.001014
N376A376VgCtgTt1515P.10.000236
N376A376TGctAct1414AY.46.50.002778
N376A376TGctAct1414B.1.1.390.007136
N376A376PGctCct913All0.000002
N376A376PGcTCcA313All0.000001
N376A376PGcTCcC113All0
N376A376SGctTct1313AY.880.011494
N376A376TGctAct1313B.1.177.730.007361
N376A376VgCtgTt1212AY.1020.000318
N376A376TGctAct1212AY.250.000072
N376A376TGctAct1212B.1.177.430.017725
N376A376IGCtATt1111All0.000002
N376A376TGctAct1111AY.140.000968
N376A376VgCtgTt1010AY.260.000283
N376A376IGCtATt1010B.1.1600.000312
N376A376AgcTgcC1010Q.10.001263
N376A376VgCtgTt99AY.410.002646
N376A376AgcTgcC88A0.003096
N376A376SGctTct88AY.30.00008
N376A376VgCtgTt88B.1.36.290.004139
N376A376SGctTct77AY.390.000173
N376A376delGCT---77AY.40.000011
N376A376SGctTct77AY.670.00325
N376A376TGctAct67B0.000767
N376A376TGcTAcC17B0.000128
N376A376delGCT---77B.10.000064
N376A376SGctTct77B.10.000064
N376A376TGctAct77B.1.2580.000466
N376A376VgCtgTt77B.1.5260.000165
N376A376DgCtgAt66All0.000001
N376A376SGctTct66AY.1020.000159
N376A376VgCtgTt66B.1.10.000109
N376A376VgCtgTt66B.1.1.2140.000333
N376A376VgCtgTt66B.1.3510.000178
N376A376AgcTgcC66B.1.4270.000303
N376A376TGctAct66B.1.5090.005195
N376A376delGCT---66C.370.000696
N376A376AgcTgcC66P.1.160.002245
N376A376AgcTgcC55AY.1020.000133
N376A376TGctAct55AY.4.40.002046
N376A376VgCtgTt55AY.430.000022
N376A376AgcTgcC55B.10.000046
N376A376TGctAct55B.1.4730.096154
N376A376VgCtgTt55B.1.780.042735
N376A376SGctTct44AE.80.001956
N376A376TGctAct44AY.1030.000025
N376A376AgcTgcC44AY.1190.000141
N376A376delGCT---44AY.250.000024
N376A376VgCtgTt44AY.250.000024
N376A376TGctAct44AY.40.000006
N376A376SGctTct44AY.440.000024
N376A376AgcTgcC44AY.460.000416
N376A376delGCT---44B.1.10.000073
N376A376AgcTgcC44B.1.10.000073
N376A376PGctCct24B.1.1.70.000002
N376A376PGcTCcC14B.1.1.70.000001
N376A376PGcTCcA14B.1.1.70.000001
N376A376VgCtgTt44B.1.1770.000053
N376A376TGctAct44B.1.177.810.000757
N376A376delGCT---44B.1.20.000035
N376A376TGctAct44B.1.2220.006768
N376A376TGctAct44B.1.2600.013378
N376A376SGctTct44B.1.4290.000094
N376A376TGctAct44B.1.5610.001588
N376A376AgcTgcC44P.10.000063
N376A376TGctAct44P.1.140.000191
N376A376del1gcTgc-33All0.000001
N376A376LGCtCTt23All0
N376A376LGCTCTC13All0
N376A376AgcTgcC33AY.1170.000254
N376A376SGctTct33AY.1190.000106
N376A376SGctTct33AY.290.000047
N376A376AgcTgcC33AY.30.00003
N376A376TGctAct33AY.390.000074
N376A376VgCtgTt33AY.450.000365
N376A376TGctAct33AY.50.000062
N376A376VgCtgTt33B.1.1.50.025
N376A376VgCtgTt33B.1.1.5260.010638
N376A376TGctAct33B.1.1.700.001023
N376A376delGCT---33B.1.1600.000094
N376A376delGCT---33B.1.1770.00004
N376A376VgCtgTt33B.1.177.810.000568
N376A376SGctTct33B.1.20.000026
N376A376SGctTct33B.1.3510.000089
N376A376AgcTgcC33B.1.3560.005181
N376A376TGctAct33B.1.360.000438
N376A376TGctAct33B.1.36.290.001552
N376A376TGctAct33B.1.416.10.004687
N376A376TGctAct33B.1.6090.001438
N376A376VgCtgTt33C.370.000348
N376A376delGCT---220.111111
N376A376AgcTgcA220.111111
N376A376EgCTgAA220.111111
N376A376QGCTCAA220.111111
N376A376PGcTCcA220.111111
N376A376EgCTgAA22All0
N376A376QGCTCAA22All0
N376A376del2GCT--C22All0
N376A376TGctAct22AY.1000.000092
N376A376delGCT---22AY.1030.000012
N376A376DgCtgAt22AY.1030.000012
N376A376SGctTct22AY.1130.000285
N376A376VgCtgTt22AY.20.000712
N376A376AgcTgcC22AY.250.000012
N376A376delGCT---22AY.260.000057
N376A376VgCtgTt22AY.30.00002
N376A376AgcTgcC22AY.3.10.000171
N376A376TGctAct22AY.330.000134
N376A376VgCtgTt22AY.4.20.000043
N376A376SGctTct22AY.410.000588
N376A376SGctTct22AY.470.000062
N376A376VgCtgTt22AY.50.000041
N376A376VgCtgTt22AY.610.00021
N376A376VgCtgTt22AY.750.000112
N376A376TGctAct22AY.880.001768
N376A376SGctTct22B.1.1.2160.001781
N376A376del1gcTgc-22B.1.1.2880.003831
N376A376TGctAct22B.1.1.3720.001377
N376A376VgCtgTt22B.1.1.4320.002532
N376A376VgCtgTt22B.1.1.4340.000697
N376A376TGctAct22B.1.177.750.002081
N376A376TGctAct22B.1.20.000018
N376A376SGctTct22B.1.220.002635
N376A376VgCtgTt22B.1.2430.000139
N376A376TGctAct22B.1.3510.000059
N376A376TGctAct22B.1.36.220.002415
N376A376TGctAct22B.1.36.80.002
N376A376AgcTgcC22B.1.3620.003082
N376A376TGctAct22B.1.4090.001563
N376A376TGctAct22B.1.4650.007605
N376A376TGctAct22B.1.4740.003802
N376A376AgcTgcG22B.1.4970.00063
N376A376SGctTct22B.1.5260.000047
N376A376TGctAct22B.1.5330.019231
N376A376delGCT---22B.1.617.20.000008
N376A376DgCtgAt22B.1.617.20.000008
N376A376VgCtgTt22B.1.6210.000177
N376A376VgCtgTt22C.36.30.001134
N376A376delGCT---22P.10.000032
N376A376AgcTgcC22P.20.000373
N376A376SGctTct22P.20.000373
N376A376delGCT---22Q.10.000253
N376A376TGctAct11A0.000387
N376A376TGctAct11A.20.000662
N376A376VgCtgTt11A.2.50.000499
N376A376HGCtCAt11All0
N376A376GgCtgGt11All0
N376A376TGctAct11AN.10.02
N376A376VgCtgTt11AY.100.00053
N376A376VgCtgTt11AY.1000.000046
N376A376delGCT---11AY.1010.00049
N376A376delGCT---11AY.1020.000027
N376A376AgcTgcA11AY.1030.000006
N376A376SGctTct11AY.1050.000643
N376A376PGctCct11AY.1100.000113
N376A376VgCtgTt11AY.1100.000113
N376A376delGCT---11AY.1140.000231
N376A376AgcTgcC11AY.1140.000231
N376A376AgcTgcC11AY.1160.000287
N376A376SGctTct11AY.1170.000085
N376A376PGctCct11AY.1190.000035
N376A376delGCT---11AY.1190.000035
N376A376AgcTgcC11AY.1200.000037
N376A376SGctTct11AY.1200.000037
N376A376del2GCT--C11AY.120.10.000321
N376A376SGctTct11AY.120.20.001285
N376A376TGctAct11AY.200.000039
N376A376SGctTct11AY.230.00007
N376A376SGctTct11AY.260.000028
N376A376AgcTgcC11AY.260.000028
N376A376VgCtgTt11AY.270.000065
N376A376TGctAct11AY.280.00189
N376A376TGctAct11AY.290.000016
N376A376DgCtgAt11AY.30.00001
N376A376AgcTgcC11AY.300.000396
N376A376AgcTgcC11AY.320.000532
N376A376delGCT---11AY.340.000097
N376A376AgcTgcC11AY.360.000148
N376A376VgCtgTt11AY.360.000148
N376A376delGCT---11AY.390.000025
N376A376VgCtgTt11AY.390.000025
N376A376VgCtgTt11AY.400.000964
N376A376delGCT---11AY.430.000004
N376A376LGCtCTt11AY.430.000004
N376A376delGCT---11AY.440.000006
N376A376SGctTct11AY.450.000122
N376A376SGctTct11AY.460.000104
N376A376AgcTgcC11AY.46.40.000165
N376A376delGCT---11AY.50.000021
N376A376SGctTct11AY.5.40.000277
N376A376SGctTct11AY.540.000095
N376A376TGctAct11AY.590.00053
N376A376AgcTgcC11AY.620.000436
N376A376delGCT---11AY.620.000436
N376A376delGCT---11AY.670.000464
N376A376AgcTgcG11AY.690.000187
N376A376AgcTgcC11AY.740.000116
N376A376AgcTgcC11AY.750.000056
N376A376TGctAct11AY.750.000056
N376A376VgCtgTt11AY.75.10.00018
N376A376PGctCct11AY.790.001211
N376A376delGCT---11AY.840.000437
N376A376SGctTct11AY.9.10.000084
N376A376delGCT---11AY.900.000684
N376A376TGctAct11AY.960.002075
N376A376TGctAct11AY.98.10.000048
N376A376SGctTct11AY.990.001049
N376A376VgCtgTt11AY.99.20.000092
N376A376SGctTct11AY.99.20.000092
N376A376LGCTCTC11B.1.10.000018
N376A376delGCT---11B.1.1.1390.022727
N376A376TGctAct11B.1.1.1530.001095
N376A376TGctAct11B.1.1.2070.001182
N376A376AgcTgcC11B.1.1.2140.000055
N376A376delGCT---11B.1.1.2360.006897
N376A376TGctAct11B.1.1.2360.006897
N376A376IGCtATt11B.1.1.270.00565
N376A376VgCtgTt11B.1.1.2770.000759
N376A376VgCtgTt11B.1.1.3050.003861
N376A376AgcTgcC11B.1.1.3110.000358
N376A376SGctTct11B.1.1.3160.000925
N376A376AgcTgcA11B.1.1.3240.052632
N376A376AgcTgcG11B.1.1.3260.001761
N376A376TGctAct11B.1.1.3260.001761
N376A376TGctAct11B.1.1.330.000421
N376A376TGctAct11B.1.1.3430.020833
N376A376TGctAct11B.1.1.370.000193
N376A376delGCT---11B.1.1.370.000193
N376A376AgcTgcC11B.1.1.3720.000689
N376A376TGctAct11B.1.1.3850.004464
N376A376TGctAct11B.1.1.4090.002833
N376A376SGctTct11B.1.1.5190.00004
N376A376TGctAct11B.1.1.5210.005348
N376A376SGctTct11B.1.1.540.003021
N376A376VgCtgTt11B.1.1.540.003021
N376A376VgCtgTt11B.1.1.630.000386
N376A376GgCtgGt11B.1.1.70.000001
N376A376HGCtCAt11B.1.1.70.000001
N376A376TGctAct11B.1.1240.007812
N376A376PGctCct11B.1.130.002375
N376A376delGCT---11B.1.1400.018868
N376A376delGCT---11B.1.1620.005025
N376A376SGctTct11B.1.1770.000013
N376A376DgCtgAt11B.1.1770.000013
N376A376TGctAct11B.1.177.230.003236
N376A376TGctAct11B.1.177.320.00135
N376A376SGctTct11B.1.177.350.000691
N376A376TGctAct11B.1.177.40.000211
N376A376TGctAct11B.1.177.500.004695
N376A376VgCtgTt11B.1.177.540.000606
N376A376TGctAct11B.1.177.620.001192
N376A376delGCT---11B.1.177.620.001192
N376A376VgCtgTt11B.1.177.630.002703
N376A376delGCT---11B.1.177.70.000165
N376A376TGctAct11B.1.177.720.00339
N376A376VgCtgTt11B.1.177.730.000566
N376A376TGctAct11B.1.177.80.000752
N376A376TGctAct11B.1.177.870.000728
N376A376AgcTgcC11B.1.20.000009
N376A376AgcTgcC11B.1.2100.002132
N376A376TGctAct11B.1.214.20.0006
N376A376PGctCct11B.1.221.30.000833
N376A376VgCtgTt11B.1.2340.000132
N376A376delGCT---11B.1.2360.002053
N376A376PGctCct11B.1.2430.00007
N376A376VgCtgTt11B.1.2580.000067
N376A376SGctTct11B.1.2580.000067
N376A376TGctAct11B.1.258.170.000104
N376A376TGctAct11B.1.2680.010417
N376A376VgCtgTt11B.1.2790.000514
N376A376AgcTgcC11B.1.3240.001605
N376A376VgCtgTt11B.1.3250.006897
N376A376SGctTct11B.1.3380.008621
N376A376TGctAct11B.1.3460.001311
N376A376AgcTgcC11B.1.3510.00003
N376A376SGctTct11B.1.3540.043478
N376A376AgcTgcC11B.1.360.000146
N376A376TGctAct11B.1.36.10.00114
N376A376VgCtgTt11B.1.36.10.00114
N376A376delGCT---11B.1.36.170.000494
N376A376VgCtgTt11B.1.3670.000792
N376A376VgCtgTt11B.1.3700.008
N376A376TGctAct11B.1.3750.00082
N376A376delGCT---11B.1.3750.00082
N376A376TGctAct11B.1.3780.006849
N376A376AgcTgcG11B.1.3890.001002
N376A376VgCtgTt11B.1.3960.000706
N376A376SGctTct11B.1.3990.001934
N376A376VgCtgTt11B.1.4080.00369
N376A376delGCT---11B.1.4150.014286
N376A376delGCT---11B.1.416.10.001563
N376A376TGctAct11B.1.4230.010204
N376A376TGctAct11B.1.4290.000024
N376A376VgCtgTt11B.1.4290.000024
N376A376AgcTgcA11B.1.4290.000024
N376A376delGCT---11B.1.438.10.000107
N376A376SGctTct11B.1.438.10.000107
N376A376TGctAct11B.1.4600.017857
N376A376SGctTct11B.1.5170.000427
N376A376TGctAct11B.1.5230.002451
N376A376del1gcTgc-11B.1.5240.001406
N376A376VgCtgTt11B.1.5250.000113
N376A376TGctAct11B.1.5260.000024
N376A376delGCT---11B.1.5260.000024
N376A376TGctAct11B.1.5670.003333
N376A376TGctAct11B.1.5760.000907
N376A376SGctTct11B.1.5760.000907
N376A376VgCtgTt11B.1.5760.000907
N376A376AgcTgcC11B.1.5770.000687
N376A376TGctAct11B.1.5810.009434
N376A376SGctTct11B.1.5880.00091
N376A376VgCtgTt11B.1.5950.000261
N376A376PGctCct11B.1.5950.000261
N376A376TGctAct11B.1.5960.000087
N376A376SGctTct11B.1.5960.000087
N376A376SGctTct11B.1.5970.00463
N376A376SGctTct11B.1.6090.000479
N376A376AgcTgcA11B.1.6120.002653
N376A376delGCT---11B.1.617.10.000129
N376A376VgCtgTt11B.1.617.10.000129
N376A376LGCtCTt11B.1.617.20.000004
N376A376del2GCT--C11B.1.617.20.000004
N376A376delGCT---11B.1.621.10.000506
N376A376delGCT---11B.1.6280.000352
N376A376TGctAct11B.1.6290.013333
N376A376delGCT---11B.1.6300.005236
N376A376VgCtgTt11B.1.6370.000073
N376A376TGctAct11B.230.002924
N376A376TGctAct11B.400.000364
N376A376TGctAct11B.550.00295
N376A376VgCtgTt11B.550.00295
N376A376TGctAct11P.10.000016
N376A376TGctAct11P.1.90.004808
N376A376delGCT---11Q.70.001111
N376A376VgCtgTt11Q.70.001111