CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 374 & Codon = aCg

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N374K374TnonsynaAgaCg47460.97872329393-29395

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N374K374TaAgaCg4647All0.000009
N374K374TaAgaCg1010B.1.1.70.000009
N374K374TaAgaCg88AY.250.000048
N374K374TaAgaCg66AY.460.000624
N374K374TaAgaCg33AY.1060.001005
N374K374TaAgaCg33AY.1140.000693
N374K374TaAgaCg22AY.280.003781
N374K374TaAgaCg22AY.40.000003
N374K374TaAgaCg22B.1.10.000036
N374K374TaAgaCg22B.1.36.90.006431
N374K374TaAgaCg11AY.1030.000006
N374K374TaAgaCg11AY.330.000067
N374K374TaAgaCg11AY.4.50.000107
N374K374TaAgaCg11AY.430.000004
N374K374TaAgaCg11AY.440.000006
N374K374TaAgaCg11AY.50.000021
N374K374TaAgaCg11AY.740.000116
N374K374TaAgaCg11B.1.1.3220.008772

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.