CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 374

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	374	K374N		nonsyn	aaG	aaT	3247	1835	0.565137	29393-29395
N	374	K374N		nonsyn	aaG	aaC	3247	1412	0.434863	29393-29395
N	374	K374K		syn	aaG	aaA	759	759	1	29393-29395
N	374	K374R		nonsyn	aAg	aGg	459	435	0.947712	29393-29395
N	374	K374R		nonsyn	aAG	aGA	459	24	0.0522876	29393-29395
N	374	K374M		nonsyn	aAg	aTg	203	203	1	29393-29395
N	374	K374E		nonsyn	Aag	Gag	189	186	0.984127	29393-29395
N	374	K374E		nonsyn	AaG	GaA	189	3	0.015873	29393-29395
N	374	K374del		del	AAG	---	98	98	1	29393-29395
N	374	K374T		nonsyn	aAg	aCg	47	46	0.978723	29393-29395
N	374	K374T		nonsyn	aAG	aCT	47	1	0.0212766	29393-29395
N	374	K374Q		nonsyn	Aag	Cag	44	42	0.954545	29393-29395
N	374	K374Q		nonsyn	AaG	CaA	44	2	0.0454545	29393-29395
N	374	K374G		nonsyn	AAg	GGg	4	3	0.75	29393-29395
N	374	K374I		nonsyn	aAG	aTC	4	2	0.5	29393-29395
N	374	K374G		nonsyn	AAG	GGT	4	1	0.25	29393-29395
N	374	K374I		nonsyn	aAG	aTA	4	1	0.25	29393-29395
N	374	K374I		nonsyn	aAG	aTT	4	1	0.25	29393-29395
N	374	K374X		nonsyn	AaG	TaA	3	1	0.333333	29393-29395
N	374	K374X		nonsyn	Aag	Tag	3	1	0.333333	29393-29395
N	374	K374X		nonsyn	AAG	TGA	3	1	0.333333	29393-29395
N	374	K374C		nonsyn	AAG	TGT	2	2	1	29393-29395
N	374	K374F		nonsyn	AAG	TTC	2	2	1	29393-29395
N	374	K374del1		del	Aag	-ag	2	1	0.5	29393-29395
N	374	K374del1		del	AaG	-aT	2	1	0.5	29393-29395
N	374	K374H		nonsyn	AaG	CaT	2	1	0.5	29393-29395
N	374	K374H		nonsyn	AaG	CaC	2	1	0.5	29393-29395
N	374	K374del2		del	AAg	--g	1	1	1	29393-29395
N	374	K374W		nonsyn	AAg	TGg	1	1	1	29393-29395

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	374	K374N	aaG	aaT	1835	3247	All	0.000351
N	374	K374N	aaG	aaC	1412	3247	All	0.00027
N	374	K374N	aaG	aaC	699	795	AY.4	0.001088
N	374	K374N	aaG	aaT	96	795	AY.4	0.000149
N	374	K374N	aaG	aaT	670	795	AY.43	0.002968
N	374	K374N	aaG	aaC	125	795	AY.43	0.000554
N	374	K374K	aaG	aaA	759	759	All	0.000145
N	374	K374R	aAg	aGg	435	459	All	0.000083
N	374	K374R	aAG	aGA	24	459	All	0.000005
N	374	K374K	aaG	aaA	429	429	B.1.516	0.83953
N	374	K374N	aaG	aaT	268	306	B.1.1.7	0.00024
N	374	K374N	aaG	aaC	38	306	B.1.1.7	0.000034
N	374	K374R	aAg	aGg	271	271	B.1.1.288	0.519157
N	374	K374M	aAg	aTg	203	203	All	0.000039
N	374	K374N	aaG	aaC	111	190	B.1.617.2	0.000418
N	374	K374N	aaG	aaT	79	190	B.1.617.2	0.000297
N	374	K374E	Aag	Gag	186	189	All	0.000036
N	374	K374E	AaG	GaA	3	189	All	0.000001
N	374	K374N	aaG	aaT	148	148	AY.25	0.00089
N	374	K374E	Aag	Gag	137	137	AY.4	0.000213
N	374	K374N	aaG	aaC	133	133	AY.74	0.015381
N	374	K374M	aAg	aTg	108	108	AY.20	0.004197
N	374	K374del	AAG	---	98	98	All	0.000019
N	374	K374N	aaG	aaT	82	97	AY.103	0.000509
N	374	K374N	aaG	aaC	15	97	AY.103	0.000093
N	374	K374N	aaG	aaT	88	88	AY.12	0.027813
N	374	K374K	aaG	aaA	78	78	B.1.1.7	0.00007
N	374	K374N	aaG	aaC	38	56	AY.44	0.000231
N	374	K374N	aaG	aaT	18	56	AY.44	0.00011
N	374	K374K	aaG	aaA	56	56	B.1.177	0.000737
N	374	K374R	aAg	aGg	51	51	B.1.177	0.000672
N	374	K374M	aAg	aTg	48	48	AY.29	0.000757
N	374	K374T	aAg	aCg	46	47	All	0.000009
N	374	K374T	aAG	aCT	1	47	All	0
N	374	K374N	aaG	aaC	38	45	B.1.1	0.000689
N	374	K374N	aaG	aaT	7	45	B.1.1	0.000127
N	374	K374Q	Aag	Cag	42	44	All	0.000008
N	374	K374Q	AaG	CaA	2	44	All	0
N	374	K374R	aAg	aGg	43	44	B.1.1.7	0.000038
N	374	K374R	aAG	aGA	1	44	B.1.1.7	0.000001
N	374	K374N	aaG	aaT	37	38	B.1.1.519	0.001469
N	374	K374N	aaG	aaC	1	38	B.1.1.519	0.00004
N	374	K374N	aaG	aaC	17	33	B.1.2	0.00015
N	374	K374N	aaG	aaT	16	33	B.1.2	0.000141
N	374	K374R	aAg	aGg	18	29	AY.43	0.00008
N	374	K374R	aAG	aGA	11	29	AY.43	0.000049
N	374	K374N	aaG	aaT	28	28	AY.20	0.001088
N	374	K374K	aaG	aaA	28	28	AY.4	0.000044
N	374	K374K	aaG	aaA	28	28	B.1.1.447	1
N	374	K374N	aaG	aaC	23	24	AY.118	0.001441
N	374	K374N	aaG	aaT	1	24	AY.118	0.000063
N	374	K374N	aaG	aaT	22	24	AY.4.2	0.000477
N	374	K374N	aaG	aaC	2	24	AY.4.2	0.000043
N	374	K374N	aaG	aaT	23	23	AY.4.5	0.002472
N	374	K374K	aaG	aaA	22	22	B.1.2	0.000194
N	374	K374N	aaG	aaT	12	21	AY.102	0.000318
N	374	K374N	aaG	aaC	9	21	AY.102	0.000239
N	374	K374M	aAg	aTg	21	21	AY.43	0.000093
N	374	K374N	aaG	aaC	16	19	AY.33	0.001068
N	374	K374N	aaG	aaT	3	19	AY.33	0.0002
N	374	K374N	aaG	aaC	17	19	AY.47	0.000529
N	374	K374N	aaG	aaT	2	19	AY.47	0.000062
N	374	K374K	aaG	aaA	18	18	AY.47	0.00056
N	374	K374N	aaG	aaT	10	18	AY.5	0.000206
N	374	K374N	aaG	aaC	8	18	AY.5	0.000165
N	374	K374del	AAG	---	18	18	B.1.1.7	0.000016
N	374	K374E	Aag	Gag	17	17	AY.43	0.000075
N	374	K374N	aaG	aaT	11	16	AY.3	0.000109
N	374	K374N	aaG	aaC	5	16	AY.3	0.00005
N	374	K374N	aaG	aaC	11	16	B.1	0.000101
N	374	K374N	aaG	aaT	5	16	B.1	0.000046
N	374	K374K	aaG	aaA	13	13	B.1.351	0.000386
N	374	K374N	aaG	aaT	10	12	P.1	0.000158
N	374	K374N	aaG	aaC	2	12	P.1	0.000032
N	374	K374N	aaG	aaT	7	11	AY.42	0.000282
N	374	K374N	aaG	aaC	4	11	AY.42	0.000161
N	374	K374N	aaG	aaC	9	10	AY.29	0.000142
N	374	K374N	aaG	aaT	1	10	AY.29	0.000016
N	374	K374R	aAg	aGg	10	10	AY.4.2	0.000217
N	374	K374T	aAg	aCg	10	10	B.1.1.7	0.000009
N	374	K374T	aAg	aCg	8	8	AY.25	0.000048
N	374	K374N	aaG	aaT	4	7	AY.39	0.000099
N	374	K374N	aaG	aaC	3	7	AY.39	0.000074
N	374	K374N	aaG	aaC	4	7	AY.58	0.00363
N	374	K374N	aaG	aaT	3	7	AY.58	0.002722
N	374	K374del	AAG	---	7	7	B.1	0.000064
N	374	K374K	aaG	aaA	7	7	B.1.1.519	0.000278
N	374	K374K	aaG	aaA	7	7	B.1.243	0.000487
N	374	K374N	aaG	aaC	5	7	B.1.617.1	0.000645
N	374	K374N	aaG	aaT	2	7	B.1.617.1	0.000258
N	374	K374K	aaG	aaA	7	7	B.1.617.2	0.000026
N	374	K374N	aaG	aaT	5	6	AY.120	0.000186
N	374	K374N	aaG	aaC	1	6	AY.120	0.000037
N	374	K374N	aaG	aaC	4	6	AY.32	0.00213
N	374	K374N	aaG	aaT	2	6	AY.32	0.001065
N	374	K374Q	Aag	Cag	6	6	AY.39.1	0.000238
N	374	K374N	aaG	aaC	5	6	AY.39.1	0.000198
N	374	K374N	aaG	aaT	1	6	AY.39.1	0.00004
N	374	K374del	AAG	---	6	6	AY.4	0.000009
N	374	K374T	aAg	aCg	6	6	AY.46	0.000624
N	374	K374N	aaG	aaC	4	6	AY.46	0.000416
N	374	K374N	aaG	aaT	2	6	AY.46	0.000208
N	374	K374N	aaG	aaT	5	6	AY.95	0.003805
N	374	K374N	aaG	aaC	1	6	AY.95	0.000761
N	374	K374Q	Aag	Cag	5	6	B.1.1.7	0.000004
N	374	K374Q	AaG	CaA	1	6	B.1.1.7	0.000001
N	374	K374del	AAG	---	6	6	C.37	0.000696
N	374	K374N	aaG	aaT	5	5	AY.100	0.00023
N	374	K374N	aaG	aaT	5	5	AY.37	0.00158
N	374	K374N	aaG	aaC	4	5	AY.6	0.000165
N	374	K374N	aaG	aaT	1	5	AY.6	0.000041
N	374	K374N	aaG	aaT	5	5	AY.8	0.00303
N	374	K374N	aaG	aaT	5	5	AY.9	0.000338
N	374	K374K	aaG	aaA	5	5	B.1	0.000046
N	374	K374N	aaG	aaT	5	5	B.1.1.222	0.00102
N	374	K374Q	Aag	Cag	5	5	B.1.177	0.000066
N	374	K374N	aaG	aaT	4	5	B.1.526	0.000094
N	374	K374N	aaG	aaC	1	5	B.1.526	0.000024
N	374	K374N	aaG	aaC	3	5	B.1.621	0.000266
N	374	K374N	aaG	aaT	2	5	B.1.621	0.000177
N	374	K374M	aAg	aTg	5	5	P.1	0.000079
N	374	K374G	AAg	GGg	3	4	All	0.000001
N	374	K374I	aAG	aTC	2	4	All	0
N	374	K374G	AAG	GGT	1	4	All	0
N	374	K374I	aAG	aTT	1	4	All	0
N	374	K374I	aAG	aTA	1	4	All	0
N	374	K374N	aaG	aaT	4	4	AY.1	0.001583
N	374	K374N	aaG	aaT	4	4	AY.23	0.000279
N	374	K374del	AAG	---	4	4	AY.25	0.000024
N	374	K374K	aaG	aaA	4	4	AY.39	0.000099
N	374	K374R	aAg	aGg	4	4	AY.5.3	0.00135
N	374	K374N	aaG	aaT	3	4	AY.98.1	0.000145
N	374	K374R	aAG	aGA	2	4	AY.98.1	0.000097
N	374	K374R	aAg	aGg	2	4	AY.98.1	0.000097
N	374	K374N	aaG	aaC	1	4	AY.98.1	0.000048
N	374	K374del	AAG	---	4	4	B.1.1	0.000073
N	374	K374N	aaG	aaT	4	4	B.1.1.176	0.001757
N	374	K374K	aaG	aaA	4	4	B.1.1.216	0.003562
N	374	K374N	aaG	aaT	4	4	B.1.1.348	0.003185
N	374	K374N	aaG	aaT	4	4	B.1.1.433	0.005698
N	374	K374N	aaG	aaC	3	4	B.1.177	0.00004
N	374	K374N	aaG	aaT	1	4	B.1.177	0.000013
N	374	K374del	AAG	---	4	4	B.1.2	0.000035
N	374	K374R	aAg	aGg	4	4	B.1.221	0.000284
N	374	K374N	aaG	aaT	4	4	B.1.232	0.002149
N	374	K374N	aaG	aaT	2	4	B.1.351	0.000059
N	374	K374N	aaG	aaC	2	4	B.1.351	0.000059
N	374	K374N	aaG	aaT	4	4	B.1.369	0.001141
N	374	K374N	aaG	aaC	4	4	B.1.466.1	0.028777
N	374	K374N	aaG	aaC	2	4	B.1.525	0.000226
N	374	K374N	aaG	aaT	2	4	B.1.525	0.000226
N	374	K374K	aaG	aaA	4	4	B.1.596	0.000349
N	374	K374Q	Aag	Cag	4	4	B.1.617.2	0.000015
N	374	K374K	aaG	aaA	4	4	B.1.621	0.000354
N	374	K374N	aaG	aaC	4	4	P.1.17	0.000647
N	374	K374N	aaG	aaT	4	4	Q.8	0.00066
N	374	K374X	AAG	TGA	1	3	All	0
N	374	K374X	AaG	TaA	1	3	All	0
N	374	K374X	Aag	Tag	1	3	All	0
N	374	K374E	Aag	Gag	3	3	AY.103	0.000019
N	374	K374T	aAg	aCg	3	3	AY.106	0.001005
N	374	K374T	aAg	aCg	3	3	AY.114	0.000693
N	374	K374Q	Aag	Cag	3	3	AY.119	0.000106
N	374	K374R	aAg	aGg	3	3	AY.25	0.000018
N	374	K374R	aAg	aGg	3	3	AY.26	0.000085
N	374	K374N	aaG	aaC	2	3	AY.27	0.000129
N	374	K374N	aaG	aaT	1	3	AY.27	0.000065
N	374	K374Q	Aag	Cag	3	3	AY.29	0.000047
N	374	K374N	aaG	aaC	2	3	AY.34.1	0.00102
N	374	K374N	aaG	aaT	1	3	AY.34.1	0.00051
N	374	K374K	aaG	aaA	3	3	AY.4.2.1	0.000447
N	374	K374R	aAG	aGA	3	3	AY.42	0.000121
N	374	K374K	aaG	aaA	3	3	AY.44	0.000018
N	374	K374N	aaG	aaT	3	3	AY.46.5	0.000595
N	374	K374Q	Aag	Cag	3	3	AY.47	0.000093
N	374	K374K	aaG	aaA	3	3	AY.5.4	0.00083
N	374	K374E	Aag	Gag	3	3	B.1.1	0.000054
N	374	K374E	Aag	Gag	2	3	B.1.1.7	0.000002
N	374	K374I	aAG	aTA	1	3	B.1.1.7	0.000001
N	374	K374E	AaG	GaA	1	3	B.1.1.7	0.000001
N	374	K374X	AAG	TGA	1	3	B.1.1.7	0.000001
N	374	K374X	Aag	Tag	1	3	B.1.1.7	0.000001
N	374	K374X	AaG	TaA	1	3	B.1.1.7	0.000001
N	374	K374I	aAG	aTT	1	3	B.1.1.7	0.000001
N	374	K374I	aAG	aTC	1	3	B.1.1.7	0.000001
N	374	K374del	AAG	---	3	3	B.1.160	0.000094
N	374	K374N	aaG	aaT	3	3	B.1.160.28	0.008772
N	374	K374del	AAG	---	3	3	B.1.177	0.00004
N	374	K374E	Aag	Gag	3	3	B.1.177	0.00004
N	374	K374N	aaG	aaT	3	3	B.1.177.81	0.000568
N	374	K374N	aaG	aaC	2	3	B.1.36	0.000292
N	374	K374N	aaG	aaT	1	3	B.1.36	0.000146
N	374	K374N	aaG	aaT	3	3	B.1.391	0.003382
N	374	K374K	aaG	aaA	3	3	B.1.429	0.000071
N	374	K374N	aaG	aaT	3	3	B.1.429	0.000071
N	374	K374N	aaG	aaT	3	3	P.1.14	0.000143
N	374	K374G	AAg	GGg	2	2		0.111111
N	374	K374M	aAg	aTg	2	2		0.111111
N	374	K374F	AAG	TTC	2	2		0.111111
N	374	K374del	AAG	---	2	2		0.111111
N	374	K374C	AAG	TGT	2	2	All	0
N	374	K374F	AAG	TTC	2	2	All	0
N	374	K374H	AaG	CaC	1	2	All	0
N	374	K374del1	AaG	-aT	1	2	All	0
N	374	K374H	AaG	CaT	1	2	All	0
N	374	K374del1	Aag	-ag	1	2	All	0
N	374	K374E	Aag	Gag	2	2	AY.102	0.000053
N	374	K374del	AAG	---	2	2	AY.103	0.000012
N	374	K374K	aaG	aaA	2	2	AY.103	0.000012
N	374	K374M	aAg	aTg	2	2	AY.104	0.003968
N	374	K374N	aaG	aaT	2	2	AY.114	0.000462
N	374	K374M	aAg	aTg	2	2	AY.118	0.000125
N	374	K374N	aaG	aaT	2	2	AY.120.2	0.002571
N	374	K374K	aaG	aaA	2	2	AY.20	0.000078
N	374	K374N	aaG	aaC	2	2	AY.24	0.000862
N	374	K374E	Aag	Gag	2	2	AY.25	0.000012
N	374	K374Q	Aag	Cag	2	2	AY.26	0.000057
N	374	K374del	AAG	---	2	2	AY.26	0.000057
N	374	K374N	aaG	aaT	2	2	AY.26	0.000057
N	374	K374T	aAg	aCg	2	2	AY.28	0.003781
N	374	K374R	aAg	aGg	2	2	AY.34	0.000194
N	374	K374T	aAg	aCg	2	2	AY.4	0.000003
N	374	K374M	aAg	aTg	2	2	AY.4	0.000003
N	374	K374E	Aag	Gag	2	2	AY.4.2	0.000043
N	374	K374K	aaG	aaA	2	2	AY.43	0.000009
N	374	K374del	AAG	---	2	2	AY.43	0.000009
N	374	K374E	Aag	Gag	2	2	AY.44	0.000012
N	374	K374N	aaG	aaT	2	2	AY.45	0.000243
N	374	K374N	aaG	aaC	1	2	AY.5.3	0.000337
N	374	K374N	aaG	aaT	1	2	AY.5.3	0.000337
N	374	K374N	aaG	aaT	2	2	AY.50	0.001599
N	374	K374N	aaG	aaT	2	2	AY.61	0.00021
N	374	K374N	aaG	aaC	1	2	AY.7.1	0.000113
N	374	K374N	aaG	aaT	1	2	AY.7.1	0.000113
N	374	K374N	aaG	aaT	2	2	AY.75	0.000112
N	374	K374N	aaG	aaT	2	2	AY.79	0.002421
N	374	K374N	aaG	aaT	2	2	AY.9.2	0.000073
N	374	K374E	Aag	Gag	2	2	AY.98	0.000158
N	374	K374N	aaG	aaT	1	2	AY.98	0.000079
N	374	K374N	aaG	aaC	1	2	AY.98	0.000079
N	374	K374N	aaG	aaC	1	2	B	0.000128
N	374	K374N	aaG	aaT	1	2	B	0.000128
N	374	K374T	aAg	aCg	2	2	B.1.1	0.000036
N	374	K374R	aAg	aGg	2	2	B.1.1	0.000036
N	374	K374N	aaG	aaT	2	2	B.1.1.214	0.000111
N	374	K374E	Aag	Gag	2	2	B.1.1.214	0.000111
N	374	K374N	aaG	aaT	2	2	B.1.1.217	0.007273
N	374	K374N	aaG	aaC	2	2	B.1.1.351	0.005587
N	374	K374N	aaG	aaT	2	2	B.1.1.464	0.002946
N	374	K374E	Aag	Gag	2	2	B.1.1.519	0.000079
N	374	K374C	AAG	TGT	2	2	B.1.1.7	0.000002
N	374	K374R	aAg	aGg	2	2	B.1.160	0.000062
N	374	K374N	aaG	aaC	2	2	B.1.160.24	0.00885
N	374	K374K	aaG	aaA	2	2	B.1.177.57	0.000562
N	374	K374M	aAg	aTg	2	2	B.1.2	0.000018
N	374	K374N	aaG	aaC	2	2	B.1.210	0.004264
N	374	K374N	aaG	aaT	2	2	B.1.36.8	0.002
N	374	K374T	aAg	aCg	2	2	B.1.36.9	0.006431
N	374	K374N	aaG	aaT	2	2	B.1.599	0.007299
N	374	K374del	AAG	---	2	2	B.1.617.2	0.000008
N	374	K374R	aAG	aGA	1	2	B.1.617.2	0.000004
N	374	K374R	aAg	aGg	1	2	B.1.617.2	0.000004
N	374	K374N	aaG	aaT	2	2	C.37	0.000232
N	374	K374del	AAG	---	2	2	P.1	0.000032
N	374	K374K	aaG	aaA	2	2	P.1.12	0.000968
N	374	K374N	aaG	aaT	2	2	P.1.15	0.000465
N	374	K374Q	Aag	Cag	2	2	Q.3	0.00029
N	374	K374K	aaG	aaA	1	1	A.2	0.000662
N	374	K374K	aaG	aaA	1	1	A.23.1	0.000704
N	374	K374N	aaG	aaT	1	1	AD.2	0.000219
N	374	K374W	AAg	TGg	1	1	All	0
N	374	K374del2	AAg	--g	1	1	All	0
N	374	K374R	aAg	aGg	1	1	AN.1	0.02
N	374	K374Q	Aag	Cag	1	1	AW.1	0.003049
N	374	K374R	aAg	aGg	1	1	AY.100	0.000046
N	374	K374del	AAG	---	1	1	AY.101	0.00049
N	374	K374del	AAG	---	1	1	AY.102	0.000027
N	374	K374R	aAg	aGg	1	1	AY.103	0.000006
N	374	K374T	aAg	aCg	1	1	AY.103	0.000006
N	374	K374M	aAg	aTg	1	1	AY.113	0.000142
N	374	K374del	AAG	---	1	1	AY.114	0.000231
N	374	K374K	aaG	aaA	1	1	AY.116.1	0.000311
N	374	K374N	aaG	aaT	1	1	AY.117	0.000085
N	374	K374M	aAg	aTg	1	1	AY.119	0.000035
N	374	K374del	AAG	---	1	1	AY.119	0.000035
N	374	K374K	aaG	aaA	1	1	AY.119	0.000035
N	374	K374R	aAG	aGA	1	1	AY.119	0.000035
N	374	K374R	aAg	aGg	1	1	AY.12	0.000316
N	374	K374H	AaG	CaT	1	1	AY.120.1	0.000321
N	374	K374N	aaG	aaT	1	1	AY.121	0.000135
N	374	K374N	aaG	aaC	1	1	AY.14	0.000088
N	374	K374N	aaG	aaC	1	1	AY.16	0.00038
N	374	K374Q	AaG	CaA	1	1	AY.16	0.00038
N	374	K374N	aaG	aaT	1	1	AY.16.1	0.00047
N	374	K374N	aaG	aaT	1	1	AY.17	0.008197
N	374	K374I	aAG	aTC	1	1	AY.20	0.000039
N	374	K374K	aaG	aaA	1	1	AY.25	0.000006
N	374	K374M	aAg	aTg	1	1	AY.25	0.000006
N	374	K374E	Aag	Gag	1	1	AY.26	0.000028
N	374	K374Q	Aag	Cag	1	1	AY.27	0.000065
N	374	K374R	aAg	aGg	1	1	AY.29	0.000016
N	374	K374M	aAg	aTg	1	1	AY.29.1	0.000221
N	374	K374E	Aag	Gag	1	1	AY.3	0.00001
N	374	K374N	aaG	aaT	1	1	AY.3.1	0.000085
N	374	K374K	aaG	aaA	1	1	AY.30	0.000396
N	374	K374T	aAg	aCg	1	1	AY.33	0.000067
N	374	K374del	AAG	---	1	1	AY.34	0.000097
N	374	K374N	aaG	aaC	1	1	AY.35	0.000233
N	374	K374del	AAG	---	1	1	AY.39	0.000025
N	374	K374Q	Aag	Cag	1	1	AY.39	0.000025
N	374	K374M	aAg	aTg	1	1	AY.39	0.000025
N	374	K374R	aAg	aGg	1	1	AY.39	0.000025
N	374	K374Q	Aag	Cag	1	1	AY.4	0.000002
N	374	K374R	aAg	aGg	1	1	AY.4	0.000002
N	374	K374N	aaG	aaC	1	1	AY.4.1	0.000737
N	374	K374T	aAg	aCg	1	1	AY.4.5	0.000107
N	374	K374N	aaG	aaT	1	1	AY.41	0.000294
N	374	K374T	aAg	aCg	1	1	AY.43	0.000004
N	374	K374Q	Aag	Cag	1	1	AY.44	0.000006
N	374	K374R	aAg	aGg	1	1	AY.44	0.000006
N	374	K374del	AAG	---	1	1	AY.44	0.000006
N	374	K374T	aAg	aCg	1	1	AY.44	0.000006
N	374	K374K	aaG	aaA	1	1	AY.46	0.000104
N	374	K374N	aaG	aaT	1	1	AY.46.1	0.001027
N	374	K374R	aAg	aGg	1	1	AY.46.2	0.000635
N	374	K374N	aaG	aaT	1	1	AY.46.6	0.000072
N	374	K374M	aAg	aTg	1	1	AY.47	0.000031
N	374	K374T	aAg	aCg	1	1	AY.5	0.000021
N	374	K374del	AAG	---	1	1	AY.5	0.000021
N	374	K374R	aAg	aGg	1	1	AY.5	0.000021
N	374	K374R	aAG	aGA	1	1	AY.5.4	0.000277
N	374	K374K	aaG	aaA	1	1	AY.51	0.000909
N	374	K374N	aaG	aaC	1	1	AY.59	0.00053
N	374	K374del	AAG	---	1	1	AY.62	0.000436
N	374	K374N	aaG	aaT	1	1	AY.62	0.000436
N	374	K374M	aAg	aTg	1	1	AY.63	0.000387
N	374	K374N	aaG	aaC	1	1	AY.64	0.000595
N	374	K374del	AAG	---	1	1	AY.67	0.000464
N	374	K374G	AAg	GGg	1	1	AY.69	0.000187
N	374	K374N	aaG	aaC	1	1	AY.7	0.000196
N	374	K374R	aAg	aGg	1	1	AY.7.1	0.000113
N	374	K374E	Aag	Gag	1	1	AY.70	0.000209
N	374	K374T	aAg	aCg	1	1	AY.74	0.000116
N	374	K374E	Aag	Gag	1	1	AY.75.1	0.00018
N	374	K374R	aAG	aGA	1	1	AY.79	0.001211
N	374	K374del	AAG	---	1	1	AY.84	0.000437
N	374	K374N	aaG	aaT	1	1	AY.84	0.000437
N	374	K374M	aAg	aTg	1	1	AY.84	0.000437
N	374	K374N	aaG	aaT	1	1	AY.87	0.000833
N	374	K374N	aaG	aaC	1	1	AY.9.1	0.000084
N	374	K374R	aAg	aGg	1	1	AY.9.2	0.000037
N	374	K374del	AAG	---	1	1	AY.90	0.000684
N	374	K374N	aaG	aaC	1	1	AY.90	0.000684
N	374	K374N	aaG	aaT	1	1	AY.96	0.002075
N	374	K374N	aaG	aaC	1	1	AY.99.2	0.000092
N	374	K374K	aaG	aaA	1	1	AY.99.2	0.000092
N	374	K374K	aaG	aaA	1	1	B	0.000128
N	374	K374Q	Aag	Cag	1	1	B.1	0.000009
N	374	K374del1	Aag	-ag	1	1	B.1.1	0.000018
N	374	K374M	aAg	aTg	1	1	B.1.1	0.000018
N	374	K374M	aAg	aTg	1	1	B.1.1.10	0.001115
N	374	K374N	aaG	aaT	1	1	B.1.1.10	0.001115
N	374	K374N	aaG	aaT	1	1	B.1.1.101	0.01
N	374	K374del	AAG	---	1	1	B.1.1.139	0.022727
N	374	K374N	aaG	aaT	1	1	B.1.1.153	0.001095
N	374	K374R	aAg	aGg	1	1	B.1.1.157	0.000913
N	374	K374R	aAG	aGA	1	1	B.1.1.216	0.00089
N	374	K374del	AAG	---	1	1	B.1.1.236	0.006897
N	374	K374K	aaG	aaA	1	1	B.1.1.237	0.005405
N	374	K374K	aaG	aaA	1	1	B.1.1.284	0.000107
N	374	K374N	aaG	aaT	1	1	B.1.1.284	0.000107
N	374	K374del2	AAg	--g	1	1	B.1.1.288	0.001916
N	374	K374R	aAG	aGA	1	1	B.1.1.306	0.000438
N	374	K374T	aAg	aCg	1	1	B.1.1.322	0.008772
N	374	K374K	aaG	aaA	1	1	B.1.1.33	0.000421
N	374	K374N	aaG	aaC	1	1	B.1.1.353	0.020833
N	374	K374del	AAG	---	1	1	B.1.1.37	0.000193
N	374	K374Q	Aag	Cag	1	1	B.1.1.377	0.001381
N	374	K374Q	Aag	Cag	1	1	B.1.1.4	0.002976
N	374	K374K	aaG	aaA	1	1	B.1.1.416	0.000905
N	374	K374K	aaG	aaA	1	1	B.1.1.419	0.007407
N	374	K374N	aaG	aaT	1	1	B.1.1.44	0.00241
N	374	K374del1	AaG	-aT	1	1	B.1.1.7	0.000001
N	374	K374H	AaG	CaC	1	1	B.1.1.7	0.000001
N	374	K374W	AAg	TGg	1	1	B.1.1.7	0.000001
N	374	K374N	aaG	aaC	1	1	B.1.110.3	0.000718
N	374	K374N	aaG	aaT	1	1	B.1.111	0.001175
N	374	K374del	AAG	---	1	1	B.1.140	0.018868
N	374	K374N	aaG	aaC	1	1	B.1.146	0.004237
N	374	K374N	aaG	aaT	1	1	B.1.160.12	0.00641
N	374	K374del	AAG	---	1	1	B.1.162	0.005025
N	374	K374M	aAg	aTg	1	1	B.1.177.19	0.001431
N	374	K374R	aAg	aGg	1	1	B.1.177.44	0.000519
N	374	K374R	aAg	aGg	1	1	B.1.177.56	0.000668
N	374	K374K	aaG	aaA	1	1	B.1.177.6	0.000977
N	374	K374del	AAG	---	1	1	B.1.177.62	0.001192
N	374	K374T	aAG	aCT	1	1	B.1.177.63	0.002703
N	374	K374del	AAG	---	1	1	B.1.177.7	0.000165
N	374	K374N	aaG	aaT	1	1	B.1.177.82	0.000477
N	374	K374R	aAg	aGg	1	1	B.1.2	0.000009
N	374	K374E	Aag	Gag	1	1	B.1.2	0.000009
N	374	K374N	aaG	aaT	1	1	B.1.234	0.000132
N	374	K374N	aaG	aaC	1	1	B.1.243	0.00007
N	374	K374N	aaG	aaT	1	1	B.1.252	0.006623
N	374	K374N	aaG	aaC	1	1	B.1.258	0.000067
N	374	K374K	aaG	aaA	1	1	B.1.258	0.000067
N	374	K374R	aAg	aGg	1	1	B.1.258.16	0.001637
N	374	K374N	aaG	aaC	1	1	B.1.258.16	0.001637
N	374	K374N	aaG	aaT	1	1	B.1.258.20	0.015873
N	374	K374N	aaG	aaT	1	1	B.1.258.7	0.001912
N	374	K374N	aaG	aaT	1	1	B.1.305	0.002151
N	374	K374N	aaG	aaT	1	1	B.1.324	0.001605
N	374	K374N	aaG	aaC	1	1	B.1.356	0.001727
N	374	K374del	AAG	---	1	1	B.1.36.17	0.000494
N	374	K374N	aaG	aaC	1	1	B.1.36.22	0.001208
N	374	K374K	aaG	aaA	1	1	B.1.36.29	0.000517
N	374	K374K	aaG	aaA	1	1	B.1.36.8	0.001
N	374	K374del	AAG	---	1	1	B.1.375	0.00082
N	374	K374N	aaG	aaT	1	1	B.1.396	0.000706
N	374	K374Q	Aag	Cag	1	1	B.1.405	0.012346
N	374	K374del	AAG	---	1	1	B.1.415	0.014286
N	374	K374del	AAG	---	1	1	B.1.416.1	0.001563
N	374	K374N	aaG	aaT	1	1	B.1.426	0.001009
N	374	K374del	AAG	---	1	1	B.1.438.1	0.000107
N	374	K374N	aaG	aaT	1	1	B.1.452	0.013699
N	374	K374K	aaG	aaA	1	1	B.1.466.2	0.000391
N	374	K374N	aaG	aaT	1	1	B.1.466.2	0.000391
N	374	K374R	aAg	aGg	1	1	B.1.497	0.000315
N	374	K374N	aaG	aaT	1	1	B.1.508	0.025641
N	374	K374del	AAG	---	1	1	B.1.526	0.000024
N	374	K374N	aaG	aaT	1	1	B.1.561	0.000397
N	374	K374N	aaG	aaT	1	1	B.1.595	0.000261
N	374	K374N	aaG	aaC	1	1	B.1.596	0.000087
N	374	K374R	aAG	aGA	1	1	B.1.617.1	0.000129
N	374	K374E	AaG	GaA	1	1	B.1.617.1	0.000129
N	374	K374K	aaG	aaA	1	1	B.1.617.1	0.000129
N	374	K374del	AAG	---	1	1	B.1.617.1	0.000129
N	374	K374E	Aag	Gag	1	1	B.1.617.2	0.000004
N	374	K374G	AAG	GGT	1	1	B.1.617.2	0.000004
N	374	K374E	AaG	GaA	1	1	B.1.617.3	0.002985
N	374	K374N	aaG	aaT	1	1	B.1.619	0.000871
N	374	K374del	AAG	---	1	1	B.1.621	0.000089
N	374	K374del	AAG	---	1	1	B.1.621.1	0.000506
N	374	K374K	aaG	aaA	1	1	B.1.625	0.002353
N	374	K374del	AAG	---	1	1	B.1.628	0.000352
N	374	K374del	AAG	---	1	1	B.1.630	0.005236
N	374	K374N	aaG	aaC	1	1	B.1.94	0.027027
N	374	K374N	aaG	aaT	1	1	B.11	0.005128
N	374	K374N	aaG	aaC	1	1	B.49	0.05
N	374	K374N	aaG	aaC	1	1	C.30.1	0.006711
N	374	K374E	Aag	Gag	1	1	D.2	0.000075
N	374	K374K	aaG	aaA	1	1	P.1.15	0.000232
N	374	K374N	aaG	aaT	1	1	P.1.4	0.000977
N	374	K374R	aAg	aGg	1	1	P.2	0.000187
N	374	K374N	aaG	aaT	1	1	P.2	0.000187
N	374	K374del	AAG	---	1	1	Q.7	0.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.