CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 373 & Codon = aaC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N373K373NnonsynaaGaaC188527180.038086129390-29392

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N373K373NaaGaaC71818852All0.000137
N373K373NaaGaaC401908B.1.617.20.000151
N373K373NaaGaaC431810AY.1030.000267
N373K373NaaGaaC771366AY.40.00012
N373K373NaaGaaC222841B.1.1.70.000199
N373K373NaaGaaC9400AY.460.000937
N373K373NaaGaaC15392AY.440.000091
N373K373NaaGaaC24391AY.430.000106
N373K373NaaGaaC12361AY.1020.000318
N373K373NaaGaaC5118AY.250.00003
N373K373NaaGaaC4110AY.1190.000141
N373K373NaaGaaC191AY.390.000025
N373K373NaaGaaC3790B.10.000339
N373K373NaaGaaC788B.1.20.000062
N373K373NaaGaaC587AY.30.00005
N373K373NaaGaaC6170AY.470.001897
N373K373NaaGaaC142AY.98.10.000048
N373K373NaaGaaC441B.1.10.000073
N373K373NaaGaaC140B.1.2340.000132
N373K373NaaGaaC139AY.46.40.000165
N373K373NaaGaaC1238P.10.000189
N373K373NaaGaaC136AY.450.000122
N373K373NaaGaaC135AY.50.000021
N373K373NaaGaaC531AY.60.000206
N373K373NaaGaaC426AY.200.000155
N373K373NaaGaaC426AY.290.000063
N373K373NaaGaaC125AY.4.20.000022
N373K373NaaGaaC425AY.420.000161
N373K373NaaGaaC124AY.1200.000037
N373K373NaaGaaC324AY.260.000085
N373K373NaaGaaC123AY.330.000067
N373K373NaaGaaC123B.1.360.000146
N373K373NaaGaaC423B.1.5260.000094
N373K373NaaGaaC219AY.1000.000092
N373K373NaaGaaC419AY.1170.000338
N373K373NaaGaaC1619AY.39.10.000634
N373K373NaaGaaC417AY.5.30.00135
N373K373NaaGaaC115AY.1060.000335
N373K373NaaGaaC113B.1.1.5190.00004
N373K373NaaGaaC213B.1.1600.000062
N373K373NaaGaaC613B.1.1770.000079
N373K373NaaGaaC313B.1.3510.000089
N373K373NaaGaaC213B.1.4290.000047
N373K373NaaGaaC111AY.230.00007
N373K373NaaGaaC210AY.270.000129
N373K373NaaGaaC110AY.46.20.000635
N373K373NaaGaaC210AY.750.000112
N373K373NaaGaaC310AY.99.20.000276
N373K373NaaGaaC49B.1.617.10.000516
N373K373NaaGaaC18AY.3.10.000085
N373K373NaaGaaC18B.1.438.10.000107
N373K373NaaGaaC17AY.780.001541
N373K373NaaGaaC57B.1.36.170.00247
N373K373NaaGaaC35R.10.00027
N373K373NaaGaaC24B.1.1.4340.000697
N373K373NaaGaaC14B.1.2580.000067
N373K373NaaGaaC13AY.120.000316
N373K373NaaGaaC23AY.16.10.00094
N373K373NaaGaaC33B.1.1.1760.001318
N373K373NaaGaaC33B.1.1.2690.00406
N373K373NaaGaaC13B.1.1.280.000311
N373K373NaaGaaC33B.1.1.3180.000905
N373K373NaaGaaC33B.1.1.630.001157
N373K373NaaGaaC13B.1.4090.000781
N373K373NaaGaaC13B.1.4990.00105
N373K373NaaGaaC13B.1.5250.000113
N373K373NaaGaaC12AY.160.00038
N373K373NaaGaaC12AY.46.50.000198
N373K373NaaGaaC12B0.000128
N373K373NaaGaaC22B.1.1.1340.022727
N373K373NaaGaaC12B.1.1.250.000569
N373K373NaaGaaC22B.1.1.2880.003831
N373K373NaaGaaC12P.1.160.000374
N373K373NaaGaaC11AY.4.40.000409
N373K373NaaGaaC11B.1.1.1700.001247
N373K373NaaGaaC11B.1.1.2160.00089
N373K373NaaGaaC11B.1.1.3530.020833
N373K373NaaGaaC11B.1.1.4200.001006
N373K373NaaGaaC11B.1.1.570.011494
N373K373NaaGaaC11B.1.2700.005618
N373K373NaaGaaC11B.1.3240.001605
N373K373NaaGaaC11B.1.350.008475
N373K373NaaGaaC11B.1.3990.001934
N373K373NaaGaaC11B.280.003279

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.