CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 371

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	371	D371D		syn	gaC	gaT	18057	18057	1	29384-29386
N	371	D371Y		nonsyn	Gac	Tac	3487	3478	0.997419	29384-29386
N	371	D371Y		nonsyn	GaC	TaT	3487	9	0.00258102	29384-29386
N	371	D371E		nonsyn	gaC	gaA	809	800	0.988875	29384-29386
N	371	D371E		nonsyn	gaC	gaG	809	9	0.0111248	29384-29386
N	371	D371N		nonsyn	Gac	Aac	290	288	0.993103	29384-29386
N	371	D371N		nonsyn	GaC	AaT	290	2	0.00689655	29384-29386
N	371	D371del		del	GAC	---	113	113	1	29384-29386
N	371	D371G		nonsyn	gAc	gGc	110	108	0.981818	29384-29386
N	371	D371G		nonsyn	gAC	gGA	110	1	0.00909091	29384-29386
N	371	D371G		nonsyn	gAC	gGG	110	1	0.00909091	29384-29386
N	371	D371V		nonsyn	gAc	gTc	109	102	0.93578	29384-29386
N	371	D371V		nonsyn	gAC	gTA	109	3	0.0275229	29384-29386
N	371	D371V		nonsyn	gAC	gTT	109	3	0.0275229	29384-29386
N	371	D371V		nonsyn	gAC	gTG	109	1	0.00917431	29384-29386
N	371	D371A		nonsyn	gAc	gCc	22	22	1	29384-29386
N	371	D371H		nonsyn	Gac	Cac	14	14	1	29384-29386
N	371	D371K		nonsyn	GaC	AaA	13	11	0.846154	29384-29386
N	371	D371del1		del	gaC	ga-	13	9	0.692308	29384-29386
N	371	D371K		nonsyn	GaC	AaG	13	2	0.153846	29384-29386
N	371	D371del1		del	GaC	Ca-	13	1	0.0769231	29384-29386
N	371	D371del1		del	GAc	-Cc	13	1	0.0769231	29384-29386
N	371	D371del1		del	gAc	g-c	13	1	0.0769231	29384-29386
N	371	D371del1		del	GAC	-NN	13	1	0.0769231	29384-29386
N	371	D371del2		del	GAC	A--	9	5	0.555556	29384-29386
N	371	D371del2		del	gAC	g--	9	4	0.444444	29384-29386
N	371	D371L		nonsyn	GAC	CTG	6	4	0.666667	29384-29386
N	371	D371L		nonsyn	GAC	TTG	6	1	0.166667	29384-29386
N	371	D371L		nonsyn	GAC	TTA	6	1	0.166667	29384-29386
N	371	D371T		nonsyn	GAC	ACA	4	3	0.75	29384-29386
N	371	D371S		nonsyn	GAc	AGc	4	2	0.5	29384-29386
N	371	D371I		nonsyn	GAC	ATA	4	2	0.5	29384-29386
N	371	D371I		nonsyn	GAC	ATT	4	2	0.5	29384-29386
N	371	D371S		nonsyn	GAc	TCc	4	2	0.5	29384-29386
N	371	D371T		nonsyn	GAc	ACc	4	1	0.25	29384-29386
N	371	D371C		nonsyn	GAc	TGc	2	2	1	29384-29386
N	371	D371F		nonsyn	GAc	TTc	2	2	1	29384-29386
N	371	D371R		nonsyn	GAC	AGG	2	1	0.5	29384-29386
N	371	D371R		nonsyn	GAC	AGA	2	1	0.5	29384-29386
N	371	D371P		nonsyn	GAC	CCA	2	1	0.5	29384-29386
N	371	D371P		nonsyn	GAc	CCc	2	1	0.5	29384-29386
N	371	D371Q		nonsyn	GaC	CaA	1	1	1	29384-29386
N	371	D371M		nonsyn	GAC	ATG	1	1	1	29384-29386
N	371	D371X		nonsyn	GaC	TaA	1	1	1	29384-29386

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	371	D371D	gaC	gaT	18057	18057	All	0.003454
N	371	D371D	gaC	gaT	6496	6496	B.1.177.12	0.985437
N	371	D371D	gaC	gaT	4550	4550	B.1.177	0.059913
N	371	D371Y	Gac	Tac	3478	3487	All	0.000665
N	371	D371Y	GaC	TaT	9	3487	All	0.000002
N	371	D371Y	Gac	Tac	3023	3032	B.1.234	0.398865
N	371	D371Y	GaC	TaT	9	3032	B.1.234	0.001187
N	371	D371D	gaC	gaT	1730	1730	B.1.177.44	0.897769
N	371	D371D	gaC	gaT	1364	1364	B.1.177.35	0.94264
N	371	D371D	gaC	gaT	1074	1074	B.1.177.42	0.960644
N	371	D371E	gaC	gaA	800	809	All	0.000153
N	371	D371E	gaC	gaG	9	809	All	0.000002
N	371	D371D	gaC	gaT	618	618	B.1.177.43	0.912851
N	371	D371D	gaC	gaT	391	391	B.1.177.41	0.9775
N	371	D371N	Gac	Aac	288	290	All	0.000055
N	371	D371N	GaC	AaT	2	290	All	0
N	371	D371E	gaC	gaA	256	257	B.1.1.7	0.000229
N	371	D371E	gaC	gaG	1	257	B.1.1.7	0.000001
N	371	D371D	gaC	gaT	192	192	B.1.1.7	0.000172
N	371	D371D	gaC	gaT	181	181	B.1.177.85	0.983696
N	371	D371D	gaC	gaT	178	178	AY.5	0.003676
N	371	D371D	gaC	gaT	178	178	B.1.177.40	0.917526
N	371	D371Y	Gac	Tac	141	141	B.1.2	0.001242
N	371	D371E	gaC	gaA	121	121	AY.4	0.000188
N	371	D371D	gaC	gaT	114	114	B.1	0.001044
N	371	D371del	GAC	---	113	113	All	0.000022
N	371	D371Y	Gac	Tac	113	113	B.1	0.001035
N	371	D371G	gAc	gGc	108	110	All	0.000021
N	371	D371G	gAC	gGA	1	110	All	0
N	371	D371G	gAC	gGG	1	110	All	0
N	371	D371V	gAc	gTc	102	109	All	0.00002
N	371	D371V	gAC	gTA	3	109	All	0.000001
N	371	D371V	gAC	gTT	3	109	All	0.000001
N	371	D371V	gAC	gTG	1	109	All	0
N	371	D371D	gaC	gaT	92	92	B.1.177.38	0.958333
N	371	D371E	gaC	gaA	85	85	AY.35	0.019809
N	371	D371N	Gac	Aac	81	81	B.1.177.48	0.253125
N	371	D371D	gaC	gaT	74	74	AY.103	0.000459
N	371	D371V	gAc	gTc	72	72	B.1.1.101	0.72
N	371	D371D	gaC	gaT	62	62	B.1.177.39	0.953846
N	371	D371D	gaC	gaT	60	60	B.1.177.36	0.967742
N	371	D371D	gaC	gaT	48	48	B.1.160	0.001497
N	371	D371D	gaC	gaT	46	46	B.1.160.30	0.136905
N	371	D371G	gAc	gGc	45	45	B.1.391	0.050733
N	371	D371D	gaC	gaT	44	44	AY.4	0.000068
N	371	D371N	Gac	Aac	44	44	Q.1	0.005558
N	371	D371D	gaC	gaT	41	41	B.1.221	0.002912
N	371	D371D	gaC	gaT	39	39	AY.25	0.000235
N	371	D371E	gaC	gaA	38	38	B.1.2	0.000335
N	371	D371D	gaC	gaT	37	37	B.1.617.2	0.000139
N	371	D371E	gaC	gaA	36	36	AY.44	0.000219
N	371	D371D	gaC	gaT	33	33	B.1.177.37	0.891892
N	371	D371N	Gac	Aac	30	32	B.1.1.7	0.000027
N	371	D371N	GaC	AaT	2	32	B.1.1.7	0.000002
N	371	D371Y	Gac	Tac	27	27	B.1.1	0.00049
N	371	D371E	gaC	gaA	22	24	B.1.617.2	0.000083
N	371	D371E	gaC	gaG	2	24	B.1.617.2	0.000008
N	371	D371G	gAc	gGc	23	23	B.1.234	0.003035
N	371	D371A	gAc	gCc	22	22	All	0.000004
N	371	D371E	gaC	gaA	22	22	AY.4.2	0.000477
N	371	D371N	Gac	Aac	22	22	AY.4.2	0.000477
N	371	D371D	gaC	gaT	22	22	B.1.36	0.00321
N	371	D371D	gaC	gaT	21	21	AY.43	0.000093
N	371	D371G	gAc	gGc	21	21	B.1.2	0.000185
N	371	D371D	gaC	gaT	19	19	AY.44	0.000116
N	371	D371D	gaC	gaT	19	19	C.38	0.153226
N	371	D371E	gaC	gaA	13	18	AY.3	0.000129
N	371	D371E	gaC	gaG	5	18	AY.3	0.00005
N	371	D371Y	Gac	Tac	17	17	B.1.1.7	0.000015
N	371	D371D	gaC	gaT	16	16	AY.53	0.0046
N	371	D371E	gaC	gaA	16	16	B.1.1.372	0.011019
N	371	D371del	GAC	---	15	15	B.1.1.7	0.000013
N	371	D371Y	Gac	Tac	15	15	B.1.596	0.001307
N	371	D371H	Gac	Cac	14	14	All	0.000003
N	371	D371E	gaC	gaA	14	14	AY.25	0.000084
N	371	D371N	Gac	Aac	14	14	B.1.160	0.000437
N	371	D371D	gaC	gaT	14	14	B.1.240	0.003018
N	371	D371K	GaC	AaA	11	13	All	0.000002
N	371	D371del1	gaC	ga-	9	13	All	0.000002
N	371	D371K	GaC	AaG	2	13	All	0
N	371	D371del1	GAC	-NN	1	13	All	0
N	371	D371del1	GAc	-Cc	1	13	All	0
N	371	D371del1	GaC	Ca-	1	13	All	0
N	371	D371del1	gAc	g-c	1	13	All	0
N	371	D371D	gaC	gaT	13	13	B.1.177.6	0.012695
N	371	D371D	gaC	gaT	12	12	B.1.1.39	0.006116
N	371	D371N	Gac	Aac	12	12	B.1.36.22	0.014493
N	371	D371E	gaC	gaA	10	10	AY.33	0.000668
N	371	D371D	gaC	gaT	10	10	B.1.427	0.000505
N	371	D371del2	GAC	A--	5	9	All	0.000001
N	371	D371del2	gAC	g--	4	9	All	0.000001
N	371	D371E	gaC	gaA	9	9	AY.5	0.000186
N	371	D371E	gaC	gaA	9	9	AY.64	0.005357
N	371	D371V	gAc	gTc	9	9	B.1.1	0.000163
N	371	D371N	Gac	Aac	9	9	B.1.1.153	0.009858
N	371	D371Y	Gac	Tac	9	9	B.1.1.218	0.069231
N	371	D371Y	Gac	Tac	9	9	B.1.177.81	0.001704
N	371	D371D	gaC	gaT	9	9	B.1.416.1	0.014063
N	371	D371E	gaC	gaA	9	9	C.37	0.001045
N	371	D371E	gaC	gaA	8	8	AY.120	0.000297
N	371	D371E	gaC	gaA	8	8	AY.26	0.000226
N	371	D371del	GAC	---	8	8	AY.4	0.000012
N	371	D371del	GAC	---	8	8	B.1	0.000073
N	371	D371E	gaC	gaA	8	8	B.1.1	0.000145
N	371	D371D	gaC	gaT	8	8	B.1.177.9	0.010652
N	371	D371D	gaC	gaT	8	8	B.1.2	0.00007
N	371	D371E	gaC	gaA	8	8	B.1.429	0.000188
N	371	D371D	gaC	gaT	8	8	B.1.429	0.000188
N	371	D371N	Gac	Aac	8	8	P.1	0.000126
N	371	D371D	gaC	gaT	7	7	AY.29	0.00011
N	371	D371D	gaC	gaT	7	7	AY.47	0.000218
N	371	D371N	Gac	Aac	7	7	B.1	0.000064
N	371	D371del	GAC	---	7	7	B.1.1	0.000127
N	371	D371D	gaC	gaT	7	7	B.1.1.100	0.28
N	371	D371D	gaC	gaT	7	7	B.1.1.432	0.008861
N	371	D371K	GaC	AaA	6	7	B.1.1.7	0.000005
N	371	D371V	gAC	gTA	3	7	B.1.1.7	0.000003
N	371	D371V	gAC	gTT	2	7	B.1.1.7	0.000002
N	371	D371V	gAC	gTG	1	7	B.1.1.7	0.000001
N	371	D371K	GaC	AaG	1	7	B.1.1.7	0.000001
N	371	D371V	gAc	gTc	1	7	B.1.1.7	0.000001
N	371	D371Y	Gac	Tac	7	7	B.1.36.29	0.003621
N	371	D371D	gaC	gaT	7	7	P.1	0.00011
N	371	D371L	GAC	CTG	4	6	All	0.000001
N	371	D371L	GAC	TTG	1	6	All	0
N	371	D371L	GAC	TTA	1	6	All	0
N	371	D371E	gaC	gaA	6	6	AY.103	0.000037
N	371	D371D	gaC	gaT	6	6	AY.3	0.00006
N	371	D371V	gAc	gTc	6	6	B.1	0.000055
N	371	D371D	gaC	gaT	6	6	B.1.1	0.000109
N	371	D371Y	Gac	Tac	6	6	B.1.1.277	0.004552
N	371	D371D	gaC	gaT	6	6	B.1.160.32	0.025751
N	371	D371D	gaC	gaT	6	6	B.1.177.31	0.068966
N	371	D371Y	Gac	Tac	6	6	B.1.177.79	0.014052
N	371	D371N	Gac	Aac	6	6	B.1.2	0.000053
N	371	D371Y	Gac	Tac	6	6	B.1.221	0.000426
N	371	D371D	gaC	gaT	6	6	B.1.351	0.000178
N	371	D371Y	Gac	Tac	6	6	B.1.429	0.000141
N	371	D371del	GAC	---	6	6	C.37	0.000696
N	371	D371E	gaC	gaA	5	5	AY.39	0.000124
N	371	D371del	GAC	---	5	5	AY.92	0.001436
N	371	D371E	gaC	gaA	5	5	B.1	0.000046
N	371	D371D	gaC	gaT	5	5	B.1.1.216	0.004452
N	371	D371L	GAC	CTG	4	5	B.1.1.7	0.000004
N	371	D371G	gAc	gGc	3	5	B.1.1.7	0.000003
N	371	D371G	gAC	gGG	1	5	B.1.1.7	0.000001
N	371	D371L	GAC	TTA	1	5	B.1.1.7	0.000001
N	371	D371G	gAC	gGA	1	5	B.1.1.7	0.000001
N	371	D371T	GAC	ACA	3	4	All	0.000001
N	371	D371S	GAc	AGc	2	4	All	0
N	371	D371I	GAC	ATA	2	4	All	0
N	371	D371S	GAc	TCc	2	4	All	0
N	371	D371I	GAC	ATT	2	4	All	0
N	371	D371T	GAc	ACc	1	4	All	0
N	371	D371D	gaC	gaT	4	4	AY.102	0.000106
N	371	D371E	gaC	gaA	4	4	AY.119	0.000141
N	371	D371E	gaC	gaA	4	4	AY.20	0.000155
N	371	D371del	GAC	---	4	4	AY.25	0.000024
N	371	D371D	gaC	gaT	4	4	AY.39	0.000099
N	371	D371D	gaC	gaT	4	4	AY.39.1	0.000158
N	371	D371Y	Gac	Tac	4	4	AY.4	0.000006
N	371	D371E	gaC	gaA	4	4	AY.43	0.000018
N	371	D371D	gaC	gaT	4	4	AY.46.4	0.000658
N	371	D371Y	Gac	Tac	4	4	B.1.1.216	0.003562
N	371	D371D	gaC	gaT	4	4	B.1.1.25	0.002274
N	371	D371I	GAC	ATT	2	4	B.1.1.7	0.000002
N	371	D371I	GAC	ATA	2	4	B.1.1.7	0.000002
N	371	D371N	Gac	Aac	4	4	B.1.119	0.042105
N	371	D371Y	Gac	Tac	4	4	B.1.160	0.000125
N	371	D371Y	Gac	Tac	4	4	B.1.177	0.000053
N	371	D371del	GAC	---	4	4	B.1.177	0.000053
N	371	D371E	gaC	gaA	4	4	B.1.177	0.000053
N	371	D371N	Gac	Aac	4	4	B.1.177.4	0.000844
N	371	D371D	gaC	gaT	4	4	B.1.177.73	0.002265
N	371	D371del	GAC	---	4	4	B.1.2	0.000035
N	371	D371D	gaC	gaT	4	4	B.1.466.2	0.001565
N	371	D371Y	Gac	Tac	4	4	B.1.526	0.000094
N	371	D371del	GAC	---	4	4	B.1.617.2	0.000015
N	371	D371D	gaC	gaT	4	4	P.1.6	0.007782
N	371	D371E	gaC	gaA	3	3	AY.102	0.00008
N	371	D371D	gaC	gaT	3	3	AY.114	0.000693
N	371	D371D	gaC	gaT	3	3	AY.27	0.000194
N	371	D371del1	gaC	ga-	3	3	AY.35	0.000699
N	371	D371N	Gac	Aac	3	3	AY.39	0.000074
N	371	D371N	Gac	Aac	3	3	AY.4	0.000005
N	371	D371D	gaC	gaT	3	3	AY.69	0.00056
N	371	D371D	gaC	gaT	3	3	AY.7	0.000588
N	371	D371A	gAc	gCc	3	3	B.1	0.000027
N	371	D371N	Gac	Aac	3	3	B.1.1.28	0.000934
N	371	D371Y	Gac	Tac	3	3	B.1.1.306	0.001315
N	371	D371V	gAc	gTc	3	3	B.1.1.33	0.001263
N	371	D371del2	gAC	g--	3	3	B.1.177.12	0.000455
N	371	D371D	gaC	gaT	3	3	B.1.177.21	0.000229
N	371	D371E	gaC	gaA	3	3	B.1.177.40	0.015464
N	371	D371D	gaC	gaT	3	3	B.1.177.45	0.001144
N	371	D371D	gaC	gaT	3	3	B.1.177.86	0.00055
N	371	D371Y	Gac	Tac	3	3	B.1.243	0.000209
N	371	D371D	gaC	gaT	3	3	B.1.258	0.0002
N	371	D371Y	Gac	Tac	3	3	B.1.258	0.0002
N	371	D371E	gaC	gaA	3	3	B.1.36.8	0.003
N	371	D371E	gaC	gaA	3	3	B.1.525	0.000339
N	371	D371A	gAc	gCc	3	3	B.1.596	0.000261
N	371	D371N	Gac	Aac	3	3	B.1.617.2	0.000011
N	371	D371Y	Gac	Tac	3	3	B.1.621	0.000266
N	371	D371N	Gac	Aac	3	3	C.35	0.002322
N	371	D371Y	Gac	Tac	3	3	P.1	0.000047
N	371	D371D	gaC	gaT	3	3	P.1.14	0.000143
N	371	D371A	gAc	gCc	2	2		0.111111
N	371	D371G	gAc	gGc	2	2		0.111111
N	371	D371del	GAC	---	2	2		0.111111
N	371	D371C	GAc	TGc	2	2		0.111111
N	371	D371C	GAc	TGc	2	2	All	0
N	371	D371F	GAc	TTc	2	2	All	0
N	371	D371R	GAC	AGA	1	2	All	0
N	371	D371P	GAC	CCA	1	2	All	0
N	371	D371P	GAc	CCc	1	2	All	0
N	371	D371R	GAC	AGG	1	2	All	0
N	371	D371E	gaC	gaA	2	2	AY.100	0.000092
N	371	D371H	Gac	Cac	2	2	AY.103	0.000012
N	371	D371del	GAC	---	2	2	AY.103	0.000012
N	371	D371D	gaC	gaT	2	2	AY.118	0.000125
N	371	D371D	gaC	gaT	2	2	AY.16	0.000759
N	371	D371del	GAC	---	2	2	AY.16	0.000759
N	371	D371D	gaC	gaT	2	2	AY.23	0.000139
N	371	D371D	gaC	gaT	2	2	AY.26	0.000057
N	371	D371Y	Gac	Tac	2	2	AY.26	0.000057
N	371	D371del	GAC	---	2	2	AY.26	0.000057
N	371	D371E	gaC	gaA	2	2	AY.29	0.000032
N	371	D371E	gaC	gaA	2	2	AY.34	0.000194
N	371	D371D	gaC	gaT	2	2	AY.37	0.000632
N	371	D371N	Gac	Aac	2	2	AY.39.1	0.000079
N	371	D371S	GAc	TCc	2	2	AY.4	0.000003
N	371	D371Y	Gac	Tac	2	2	AY.4.2	0.000043
N	371	D371D	gaC	gaT	2	2	AY.4.2	0.000043
N	371	D371N	Gac	Aac	2	2	AY.42	0.00008
N	371	D371del	GAC	---	2	2	AY.43	0.000009
N	371	D371E	gaC	gaA	2	2	AY.46	0.000208
N	371	D371D	gaC	gaT	2	2	AY.67	0.000929
N	371	D371E	gaC	gaA	2	2	AY.75	0.000112
N	371	D371D	gaC	gaT	2	2	AY.79	0.002421
N	371	D371D	gaC	gaT	2	2	AY.80	0.002257
N	371	D371E	gaC	gaA	2	2	AY.85	0.000854
N	371	D371D	gaC	gaT	2	2	AY.9.2	0.000073
N	371	D371D	gaC	gaT	2	2	B	0.000256
N	371	D371del2	GAC	A--	2	2	B.1	0.000018
N	371	D371A	gAc	gCc	2	2	B.1.1.25	0.001137
N	371	D371E	gaC	gaA	2	2	B.1.1.33	0.000842
N	371	D371D	gaC	gaT	2	2	B.1.1.372	0.001377
N	371	D371V	gAc	gTc	2	2	B.1.1.462	0.017241
N	371	D371H	Gac	Cac	2	2	B.1.1.7	0.000002
N	371	D371T	GAC	ACA	1	2	B.1.1.7	0.000001
N	371	D371R	GAC	AGG	1	2	B.1.1.7	0.000001
N	371	D371T	GAc	ACc	1	2	B.1.1.7	0.000001
N	371	D371P	GAC	CCA	1	2	B.1.1.7	0.000001
N	371	D371P	GAc	CCc	1	2	B.1.1.7	0.000001
N	371	D371R	GAC	AGA	1	2	B.1.1.7	0.000001
N	371	D371del	GAC	---	2	2	B.1.160	0.000062
N	371	D371D	gaC	gaT	2	2	B.1.160.10	0.016129
N	371	D371del1	gaC	ga-	2	2	B.1.177	0.000026
N	371	D371E	gaC	gaA	2	2	B.1.177.12	0.000303
N	371	D371del1	gaC	ga-	2	2	B.1.177.12	0.000303
N	371	D371D	gaC	gaT	2	2	B.1.177.24	0.002591
N	371	D371D	gaC	gaT	2	2	B.1.177.52	0.003515
N	371	D371D	gaC	gaT	2	2	B.1.177.57	0.000562
N	371	D371E	gaC	gaA	2	2	B.1.177.58	0.002663
N	371	D371D	gaC	gaT	2	2	B.1.177.84	0.013333
N	371	D371Y	Gac	Tac	2	2	B.1.236	0.004107
N	371	D371D	gaC	gaT	2	2	B.1.243	0.000139
N	371	D371A	gAc	gCc	2	2	B.1.313	0.013158
N	371	D371Y	Gac	Tac	2	2	B.1.349	0.00143
N	371	D371E	gaC	gaA	2	2	B.1.351	0.000059
N	371	D371N	Gac	Aac	2	2	B.1.36.1	0.002281
N	371	D371D	gaC	gaT	2	2	B.1.381	0.015625
N	371	D371Y	Gac	Tac	2	2	B.1.403	0.006536
N	371	D371D	gaC	gaT	2	2	B.1.497	0.00063
N	371	D371E	gaC	gaA	2	2	B.1.526	0.000047
N	371	D371D	gaC	gaT	2	2	B.1.526	0.000047
N	371	D371A	gAc	gCc	2	2	B.1.587	0.003795
N	371	D371del	GAC	---	2	2	B.1.617.1	0.000258
N	371	D371E	gaC	gaA	2	2	B.1.628	0.000705
N	371	D371E	gaC	gaA	2	2	B.1.637	0.000146
N	371	D371Y	Gac	Tac	2	2	C.1	0.004785
N	371	D371D	gaC	gaT	2	2	C.37	0.000232
N	371	D371Y	Gac	Tac	2	2	D.2	0.00015
N	371	D371del	GAC	---	2	2	P.1	0.000032
N	371	D371G	gAc	gGc	2	2	P.1.14	0.000096
N	371	D371D	gaC	gaT	2	2	P.1.15	0.000465
N	371	D371Y	Gac	Tac	2	2	P.1.15	0.000465
N	371	D371Y	Gac	Tac	2	2	P.1.4	0.001953
N	371	D371Y	Gac	Tac	2	2	P.2	0.000373
N	371	D371T	GAC	ACA	1	1	A.1	0.000282
N	371	D371Y	Gac	Tac	1	1	A.2.5	0.000499
N	371	D371G	gAc	gGc	1	1	AE.8	0.000489
N	371	D371Q	GaC	CaA	1	1	All	0
N	371	D371M	GAC	ATG	1	1	All	0
N	371	D371X	GaC	TaA	1	1	All	0
N	371	D371D	gaC	gaT	1	1	AN.1	0.02
N	371	D371del	GAC	---	1	1	AY.101	0.00049
N	371	D371del	GAC	---	1	1	AY.102	0.000027
N	371	D371G	gAc	gGc	1	1	AY.103	0.000006
N	371	D371del2	GAC	A--	1	1	AY.103	0.000006
N	371	D371del	GAC	---	1	1	AY.114	0.000231
N	371	D371E	gaC	gaA	1	1	AY.116.1	0.000311
N	371	D371E	gaC	gaA	1	1	AY.117	0.000085
N	371	D371E	gaC	gaA	1	1	AY.118	0.000063
N	371	D371del	GAC	---	1	1	AY.119	0.000035
N	371	D371E	gaC	gaA	1	1	AY.12	0.000316
N	371	D371N	Gac	Aac	1	1	AY.120	0.000037
N	371	D371E	gaC	gaA	1	1	AY.13	0.000161
N	371	D371Y	Gac	Tac	1	1	AY.13	0.000161
N	371	D371N	Gac	Aac	1	1	AY.14	0.000088
N	371	D371V	gAC	gTT	1	1	AY.20	0.000039
N	371	D371N	Gac	Aac	1	1	AY.23	0.00007
N	371	D371T	GAC	ACA	1	1	AY.23	0.00007
N	371	D371D	gaC	gaT	1	1	AY.23.1	0.000417
N	371	D371A	gAc	gCc	1	1	AY.26	0.000028
N	371	D371D	gaC	gaT	1	1	AY.30	0.000396
N	371	D371E	gaC	gaA	1	1	AY.30	0.000396
N	371	D371D	gaC	gaT	1	1	AY.33	0.000067
N	371	D371del	GAC	---	1	1	AY.33	0.000067
N	371	D371del	GAC	---	1	1	AY.34	0.000097
N	371	D371K	GaC	AaA	1	1	AY.35	0.000233
N	371	D371K	GaC	AaA	1	1	AY.39	0.000025
N	371	D371del	GAC	---	1	1	AY.39	0.000025
N	371	D371H	Gac	Cac	1	1	AY.4	0.000002
N	371	D371G	gAc	gGc	1	1	AY.4	0.000002
N	371	D371D	gaC	gaT	1	1	AY.4.1	0.000737
N	371	D371E	gaC	gaA	1	1	AY.4.3	0.000842
N	371	D371Y	Gac	Tac	1	1	AY.43	0.000004
N	371	D371G	gAc	gGc	1	1	AY.43	0.000004
N	371	D371H	Gac	Cac	1	1	AY.43	0.000004
N	371	D371N	Gac	Aac	1	1	AY.44	0.000006
N	371	D371del	GAC	---	1	1	AY.44	0.000006
N	371	D371H	Gac	Cac	1	1	AY.44	0.000006
N	371	D371del2	GAC	A--	1	1	AY.44	0.000006
N	371	D371N	Gac	Aac	1	1	AY.45	0.000122
N	371	D371E	gaC	gaA	1	1	AY.45	0.000122
N	371	D371D	gaC	gaT	1	1	AY.45	0.000122
N	371	D371E	gaC	gaA	1	1	AY.46.4	0.000165
N	371	D371E	gaC	gaA	1	1	AY.47	0.000031
N	371	D371del	GAC	---	1	1	AY.5	0.000021
N	371	D371D	gaC	gaT	1	1	AY.5.3	0.000337
N	371	D371Y	Gac	Tac	1	1	AY.6	0.000041
N	371	D371E	gaC	gaA	1	1	AY.6	0.000041
N	371	D371E	gaC	gaA	1	1	AY.61	0.000105
N	371	D371del2	gAC	g--	1	1	AY.62	0.000436
N	371	D371del	GAC	---	1	1	AY.67	0.000464
N	371	D371E	gaC	gaG	1	1	AY.69	0.000187
N	371	D371N	Gac	Aac	1	1	AY.69	0.000187
N	371	D371D	gaC	gaT	1	1	AY.7.1	0.000113
N	371	D371E	gaC	gaA	1	1	AY.74	0.000116
N	371	D371E	gaC	gaA	1	1	AY.78	0.001541
N	371	D371del	GAC	---	1	1	AY.84	0.000437
N	371	D371D	gaC	gaT	1	1	AY.84	0.000437
N	371	D371D	gaC	gaT	1	1	AY.9	0.000068
N	371	D371N	Gac	Aac	1	1	AY.9.1	0.000084
N	371	D371Y	Gac	Tac	1	1	AY.9.2	0.000037
N	371	D371E	gaC	gaA	1	1	AY.9.2	0.000037
N	371	D371D	gaC	gaT	1	1	AY.92	0.000287
N	371	D371N	Gac	Aac	1	1	AY.92	0.000287
N	371	D371E	gaC	gaA	1	1	AY.94	0.000443
N	371	D371D	gaC	gaT	1	1	AY.98	0.000079
N	371	D371Y	Gac	Tac	1	1	AY.98	0.000079
N	371	D371D	gaC	gaT	1	1	AY.98.1	0.000048
N	371	D371E	gaC	gaA	1	1	AY.98.1	0.000048
N	371	D371E	gaC	gaA	1	1	AY.99.2	0.000092
N	371	D371D	gaC	gaT	1	1	AZ.2	0.000821
N	371	D371V	gAc	gTc	1	1	B	0.000128
N	371	D371G	gAc	gGc	1	1	B.1	0.000009
N	371	D371del1	GAC	-NN	1	1	B.1	0.000009
N	371	D371H	Gac	Cac	1	1	B.1	0.000009
N	371	D371F	GAc	TTc	1	1	B.1	0.000009
N	371	D371L	GAC	TTG	1	1	B.1.1	0.000018
N	371	D371A	gAc	gCc	1	1	B.1.1	0.000018
N	371	D371G	gAc	gGc	1	1	B.1.1	0.000018
N	371	D371N	Gac	Aac	1	1	B.1.1	0.000018
N	371	D371Y	Gac	Tac	1	1	B.1.1.1	0.000327
N	371	D371E	gaC	gaA	1	1	B.1.1.1	0.000327
N	371	D371del	GAC	---	1	1	B.1.1.139	0.022727
N	371	D371Y	Gac	Tac	1	1	B.1.1.176	0.000439
N	371	D371D	gaC	gaT	1	1	B.1.1.189	0.001513
N	371	D371V	gAc	gTc	1	1	B.1.1.192	0.002309
N	371	D371V	gAc	gTc	1	1	B.1.1.194	0.00495
N	371	D371A	gAc	gCc	1	1	B.1.1.216	0.00089
N	371	D371V	gAc	gTc	1	1	B.1.1.218	0.007692
N	371	D371E	gaC	gaA	1	1	B.1.1.222	0.000204
N	371	D371del	GAC	---	1	1	B.1.1.236	0.006897
N	371	D371D	gaC	gaT	1	1	B.1.1.269	0.001353
N	371	D371K	GaC	AaG	1	1	B.1.1.27	0.00565
N	371	D371E	gaC	gaA	1	1	B.1.1.28	0.000311
N	371	D371D	gaC	gaT	1	1	B.1.1.303	0.002762
N	371	D371N	Gac	Aac	1	1	B.1.1.305	0.003861
N	371	D371D	gaC	gaT	1	1	B.1.1.306	0.000438
N	371	D371V	gAc	gTc	1	1	B.1.1.306	0.000438
N	371	D371E	gaC	gaA	1	1	B.1.1.320	0.018182
N	371	D371D	gaC	gaT	1	1	B.1.1.326	0.001761
N	371	D371K	GaC	AaA	1	1	B.1.1.33	0.000421
N	371	D371N	Gac	Aac	1	1	B.1.1.33	0.000421
N	371	D371N	Gac	Aac	1	1	B.1.1.348	0.000796
N	371	D371del1	gAc	g-c	1	1	B.1.1.353	0.020833
N	371	D371N	Gac	Aac	1	1	B.1.1.369	0.000446
N	371	D371del	GAC	---	1	1	B.1.1.37	0.000193
N	371	D371N	Gac	Aac	1	1	B.1.1.372	0.000689
N	371	D371G	gAc	gGc	1	1	B.1.1.389	0.006061
N	371	D371D	gaC	gaT	1	1	B.1.1.389	0.006061
N	371	D371Y	Gac	Tac	1	1	B.1.1.39	0.00051
N	371	D371A	gAc	gCc	1	1	B.1.1.432	0.001266
N	371	D371D	gaC	gaT	1	1	B.1.1.433	0.001425
N	371	D371D	gaC	gaT	1	1	B.1.1.434	0.000349
N	371	D371N	Gac	Aac	1	1	B.1.1.50	0.000679
N	371	D371E	gaC	gaA	1	1	B.1.1.516	0.066667
N	371	D371E	gaC	gaA	1	1	B.1.1.519	0.00004
N	371	D371Y	Gac	Tac	1	1	B.1.1.519	0.00004
N	371	D371D	gaC	gaT	1	1	B.1.1.519	0.00004
N	371	D371N	Gac	Aac	1	1	B.1.1.519	0.00004
N	371	D371D	gaC	gaT	1	1	B.1.1.521	0.005348
N	371	D371E	gaC	gaA	1	1	B.1.1.521	0.005348
N	371	D371M	GAC	ATG	1	1	B.1.1.7	0.000001
N	371	D371Q	GaC	CaA	1	1	B.1.1.7	0.000001
N	371	D371del1	gaC	ga-	1	1	B.1.1.7	0.000001
N	371	D371S	GAc	AGc	1	1	B.1.1.7	0.000001
N	371	D371X	GaC	TaA	1	1	B.1.1.7	0.000001
N	371	D371F	GAc	TTc	1	1	B.1.1.7	0.000001
N	371	D371D	gaC	gaT	1	1	B.1.1.70	0.000341
N	371	D371D	gaC	gaT	1	1	B.1.1.71	0.006061
N	371	D371V	gAc	gTc	1	1	B.1.1.95	0.019608
N	371	D371Y	Gac	Tac	1	1	B.1.111	0.001175
N	371	D371E	gaC	gaA	1	1	B.1.139	0.000733
N	371	D371del	GAC	---	1	1	B.1.140	0.018868
N	371	D371G	gAc	gGc	1	1	B.1.160	0.000031
N	371	D371D	gaC	gaT	1	1	B.1.160.25	0.011111
N	371	D371del	GAC	---	1	1	B.1.162	0.005025
N	371	D371H	Gac	Cac	1	1	B.1.177	0.000013
N	371	D371D	gaC	gaT	1	1	B.1.177.17	0.000821
N	371	D371N	Gac	Aac	1	1	B.1.177.18	0.00116
N	371	D371E	gaC	gaA	1	1	B.1.177.21	0.000076
N	371	D371D	gaC	gaT	1	1	B.1.177.23	0.003236
N	371	D371D	gaC	gaT	1	1	B.1.177.32	0.00135
N	371	D371del1	gaC	ga-	1	1	B.1.177.35	0.000691
N	371	D371E	gaC	gaA	1	1	B.1.177.43	0.001477
N	371	D371D	gaC	gaT	1	1	B.1.177.50	0.004695
N	371	D371del	GAC	---	1	1	B.1.177.62	0.001192
N	371	D371H	Gac	Cac	1	1	B.1.177.63	0.002703
N	371	D371D	gaC	gaT	1	1	B.1.177.65	0.000665
N	371	D371del	GAC	---	1	1	B.1.177.7	0.000165
N	371	D371E	gaC	gaA	1	1	B.1.177.7	0.000165
N	371	D371E	gaC	gaA	1	1	B.1.177.81	0.000189
N	371	D371D	gaC	gaT	1	1	B.1.177.81	0.000189
N	371	D371D	gaC	gaT	1	1	B.1.177.83	0.001481
N	371	D371V	gAc	gTc	1	1	B.1.2	0.000009
N	371	D371K	GaC	AaA	1	1	B.1.2	0.000009
N	371	D371Y	Gac	Tac	1	1	B.1.206	0.000816
N	371	D371Y	Gac	Tac	1	1	B.1.214	0.003663
N	371	D371D	gaC	gaT	1	1	B.1.22	0.001318
N	371	D371del	GAC	---	1	1	B.1.221	0.000071
N	371	D371N	Gac	Aac	1	1	B.1.221	0.000071
N	371	D371D	gaC	gaT	1	1	B.1.222	0.001692
N	371	D371D	gaC	gaT	1	1	B.1.236	0.002053
N	371	D371Y	Gac	Tac	1	1	B.1.240	0.000216
N	371	D371D	gaC	gaT	1	1	B.1.258.11	0.000396
N	371	D371V	gAc	gTc	1	1	B.1.258.17	0.000104
N	371	D371D	gaC	gaT	1	1	B.1.258.21	0.007752
N	371	D371Y	Gac	Tac	1	1	B.1.258.3	0.001675
N	371	D371Y	Gac	Tac	1	1	B.1.258.4	0.003448
N	371	D371D	gaC	gaT	1	1	B.1.260	0.003344
N	371	D371Y	Gac	Tac	1	1	B.1.305	0.002151
N	371	D371D	gaC	gaT	1	1	B.1.35	0.008475
N	371	D371Y	Gac	Tac	1	1	B.1.351	0.00003
N	371	D371del1	GaC	Ca-	1	1	B.1.36	0.000146
N	371	D371E	gaC	gaA	1	1	B.1.36	0.000146
N	371	D371N	Gac	Aac	1	1	B.1.36	0.000146
N	371	D371del	GAC	---	1	1	B.1.36.17	0.000494
N	371	D371E	gaC	gaA	1	1	B.1.36.18	0.00042
N	371	D371del1	GAc	-Cc	1	1	B.1.36.22	0.001208
N	371	D371D	gaC	gaT	1	1	B.1.36.22	0.001208
N	371	D371Y	Gac	Tac	1	1	B.1.36.26	0.002857
N	371	D371Y	Gac	Tac	1	1	B.1.36.31	0.001751
N	371	D371del	GAC	---	1	1	B.1.36.8	0.001
N	371	D371D	gaC	gaT	1	1	B.1.362	0.001541
N	371	D371D	gaC	gaT	1	1	B.1.375	0.00082
N	371	D371del	GAC	---	1	1	B.1.375	0.00082
N	371	D371Y	Gac	Tac	1	1	B.1.396	0.000706
N	371	D371del	GAC	---	1	1	B.1.415	0.014286
N	371	D371H	Gac	Cac	1	1	B.1.416	0.001269
N	371	D371N	Gac	Aac	1	1	B.1.416	0.001269
N	371	D371Y	Gac	Tac	1	1	B.1.416	0.001269
N	371	D371del	GAC	---	1	1	B.1.416.1	0.001563
N	371	D371Y	Gac	Tac	1	1	B.1.417	0.028571
N	371	D371D	gaC	gaT	1	1	B.1.421	0.007463
N	371	D371E	gaC	gaA	1	1	B.1.423	0.010204
N	371	D371E	gaC	gaA	1	1	B.1.428	0.00102
N	371	D371G	gAc	gGc	1	1	B.1.429	0.000024
N	371	D371N	Gac	Aac	1	1	B.1.429	0.000024
N	371	D371A	gAc	gCc	1	1	B.1.429	0.000024
N	371	D371K	GaC	AaA	1	1	B.1.429	0.000024
N	371	D371del	GAC	---	1	1	B.1.438.1	0.000107
N	371	D371Y	Gac	Tac	1	1	B.1.442	0.035714
N	371	D371D	gaC	gaT	1	1	B.1.462	0.007246
N	371	D371Y	Gac	Tac	1	1	B.1.466	0.023256
N	371	D371N	Gac	Aac	1	1	B.1.466	0.023256
N	371	D371G	gAc	gGc	1	1	B.1.466.2	0.000391
N	371	D371Y	Gac	Tac	1	1	B.1.471	0.002732
N	371	D371Y	Gac	Tac	1	1	B.1.501	0.007353
N	371	D371D	gaC	gaT	1	1	B.1.509	0.000866
N	371	D371Y	Gac	Tac	1	1	B.1.521	0.004975
N	371	D371Y	Gac	Tac	1	1	B.1.524	0.001406
N	371	D371D	gaC	gaT	1	1	B.1.525	0.000113
N	371	D371del	GAC	---	1	1	B.1.526	0.000024
N	371	D371Y	Gac	Tac	1	1	B.1.527	0.003704
N	371	D371Y	Gac	Tac	1	1	B.1.566	0.019231
N	371	D371N	Gac	Aac	1	1	B.1.576	0.000907
N	371	D371Y	Gac	Tac	1	1	B.1.576	0.000907
N	371	D371Y	Gac	Tac	1	1	B.1.580	0.004065
N	371	D371D	gaC	gaT	1	1	B.1.590	0.004545
N	371	D371Y	Gac	Tac	1	1	B.1.595	0.000261
N	371	D371D	gaC	gaT	1	1	B.1.595	0.000261
N	371	D371A	gAc	gCc	1	1	B.1.601	0.030303
N	371	D371D	gaC	gaT	1	1	B.1.609	0.000479
N	371	D371V	gAc	gTc	1	1	B.1.609	0.000479
N	371	D371Y	Gac	Tac	1	1	B.1.617.1	0.000129
N	371	D371D	gaC	gaT	1	1	B.1.617.1	0.000129
N	371	D371A	gAc	gCc	1	1	B.1.617.1	0.000129
N	371	D371Y	Gac	Tac	1	1	B.1.617.2	0.000004
N	371	D371del2	GAC	A--	1	1	B.1.617.2	0.000004
N	371	D371A	gAc	gCc	1	1	B.1.617.2	0.000004
N	371	D371S	GAc	AGc	1	1	B.1.617.3	0.002985
N	371	D371N	Gac	Aac	1	1	B.1.619.1	0.000641
N	371	D371D	gaC	gaT	1	1	B.1.619.1	0.000641
N	371	D371N	Gac	Aac	1	1	B.1.621	0.000089
N	371	D371D	gaC	gaT	1	1	B.1.621	0.000089
N	371	D371del	GAC	---	1	1	B.1.621	0.000089
N	371	D371del	GAC	---	1	1	B.1.621.1	0.000506
N	371	D371D	gaC	gaT	1	1	B.1.627	0.00202
N	371	D371D	gaC	gaT	1	1	B.1.628	0.000352
N	371	D371del	GAC	---	1	1	B.1.628	0.000352
N	371	D371del	GAC	---	1	1	B.1.630	0.005236
N	371	D371G	gAc	gGc	1	1	B.1.637	0.000073
N	371	D371Y	Gac	Tac	1	1	B.1.78	0.008547
N	371	D371E	gaC	gaA	1	1	B.40	0.000364
N	371	D371E	gaC	gaA	1	1	B.55	0.00295
N	371	D371E	gaC	gaA	1	1	C.35	0.000774
N	371	D371H	Gac	Cac	1	1	C.37	0.000116
N	371	D371H	Gac	Cac	1	1	D.2	0.000075
N	371	D371D	gaC	gaT	1	1	D.2	0.000075
N	371	D371G	gAc	gGc	1	1	P.1	0.000016
N	371	D371Y	Gac	Tac	1	1	P.1.10	0.000269
N	371	D371N	Gac	Aac	1	1	P.1.10	0.000269
N	371	D371D	gaC	gaT	1	1	P.1.12	0.000484
N	371	D371D	gaC	gaT	1	1	P.1.2	0.001156
N	371	D371del	GAC	---	1	1	P.2	0.000187
N	371	D371D	gaC	gaT	1	1	Q.3	0.000145
N	371	D371del	GAC	---	1	1	Q.7	0.001111
N	371	D371H	Gac	Cac	1	1	Q.8	0.000165
N	371	D371E	gaC	gaA	1	1	Q.8	0.000165
N	371	D371D	gaC	gaT	1	1	Z.1	0.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.