CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 366

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	366	T366I		nonsyn	aCa	aTa	13088	13078	0.999236	29369-29371
N	366	T366I		nonsyn	aCA	aTT	13088	8	0.000611247	29369-29371
N	366	T366I		nonsyn	aCA	aTC	13088	2	0.000152812	29369-29371
N	366	T366T		syn	acA	acG	1212	958	0.790429	29369-29371
N	366	T366T		syn	acA	acT	1212	181	0.14934	29369-29371
N	366	T366T		syn	acA	acC	1212	73	0.060231	29369-29371
N	366	T366A		nonsyn	Aca	Gca	531	524	0.986817	29369-29371
N	366	T366A		nonsyn	AcA	GcC	531	4	0.00753296	29369-29371
N	366	T366A		nonsyn	AcA	GcT	531	2	0.00376648	29369-29371
N	366	T366A		nonsyn	AcA	GcG	531	1	0.00188324	29369-29371
N	366	T366S		nonsyn	Aca	Tca	152	142	0.934211	29369-29371
N	366	T366S		nonsyn	AcA	TcT	152	3	0.0197368	29369-29371
N	366	T366S		nonsyn	AcA	TcC	152	3	0.0197368	29369-29371
N	366	T366S		nonsyn	aCA	aGC	152	2	0.0131579	29369-29371
N	366	T366S		nonsyn	aCA	aGT	152	1	0.00657895	29369-29371
N	366	T366S		nonsyn	AcA	TcG	152	1	0.00657895	29369-29371
N	366	T366R		nonsyn	aCa	aGa	116	105	0.905172	29369-29371
N	366	T366R		nonsyn	ACa	CGa	116	5	0.0431034	29369-29371
N	366	T366R		nonsyn	aCA	aGG	116	3	0.0258621	29369-29371
N	366	T366R		nonsyn	ACA	CGG	116	2	0.0172414	29369-29371
N	366	T366R		nonsyn	ACA	CGC	116	1	0.00862069	29369-29371
N	366	T366P		nonsyn	Aca	Cca	106	102	0.962264	29369-29371
N	366	T366P		nonsyn	AcA	CcT	106	2	0.0188679	29369-29371
N	366	T366P		nonsyn	AcA	CcC	106	2	0.0188679	29369-29371
N	366	T366K		nonsyn	aCa	aAa	82	74	0.902439	29369-29371
N	366	T366K		nonsyn	aCA	aAG	82	8	0.097561	29369-29371
N	366	T366del		del	ACA	---	68	68	1	29369-29371
N	366	T366X		nonsyn	ACa	TAa	28	18	0.642857	29369-29371
N	366	T366X		nonsyn	ACa	TGa	28	5	0.178571	29369-29371
N	366	T366X		nonsyn	ACA	TAG	28	5	0.178571	29369-29371
N	366	T366N		nonsyn	aCA	aAT	20	13	0.65	29369-29371
N	366	T366N		nonsyn	aCA	aAC	20	7	0.35	29369-29371
N	366	T366E		nonsyn	ACa	GAa	17	14	0.823529	29369-29371
N	366	T366E		nonsyn	ACA	GAG	17	3	0.176471	29369-29371
N	366	T366Q		nonsyn	ACa	CAa	16	14	0.875	29369-29371
N	366	T366L		nonsyn	ACa	TTa	16	6	0.375	29369-29371
N	366	T366L		nonsyn	ACa	CTa	16	4	0.25	29369-29371
N	366	T366L		nonsyn	ACA	TTG	16	3	0.1875	29369-29371
N	366	T366Q		nonsyn	ACA	CAG	16	2	0.125	29369-29371
N	366	T366L		nonsyn	ACA	CTT	16	2	0.125	29369-29371
N	366	T366L		nonsyn	ACA	CTG	16	1	0.0625	29369-29371
N	366	T366V		nonsyn	ACa	GTa	10	6	0.6	29369-29371
N	366	T366V		nonsyn	ACA	GTG	10	2	0.2	29369-29371
N	366	T366V		nonsyn	ACA	GTT	10	2	0.2	29369-29371
N	366	T366Y		nonsyn	ACA	TAT	9	5	0.555556	29369-29371
N	366	T366Y		nonsyn	ACA	TAC	9	4	0.444444	29369-29371
N	366	T366del1		del	acA	ac-	8	6	0.75	29369-29371
N	366	T366D		nonsyn	ACA	GAC	8	4	0.5	29369-29371
N	366	T366H		nonsyn	ACA	CAT	8	4	0.5	29369-29371
N	366	T366D		nonsyn	ACA	GAT	8	4	0.5	29369-29371
N	366	T366H		nonsyn	ACA	CAC	8	4	0.5	29369-29371
N	366	T366del1		del	Aca	-ca	8	1	0.125	29369-29371
N	366	T366del1		del	aCa	a-a	8	1	0.125	29369-29371
N	366	T366G		nonsyn	ACa	GGa	5	3	0.6	29369-29371
N	366	T366G		nonsyn	ACA	GGC	5	1	0.2	29369-29371
N	366	T366G		nonsyn	ACA	GGG	5	1	0.2	29369-29371
N	366	T366M		nonsyn	aCA	aTG	4	4	1	29369-29371
N	366	T366F		nonsyn	ACA	TTC	3	2	0.666667	29369-29371
N	366	T366C		nonsyn	ACA	TGC	3	2	0.666667	29369-29371
N	366	T366F		nonsyn	ACA	TTT	3	1	0.333333	29369-29371
N	366	T366C		nonsyn	ACA	TGT	3	1	0.333333	29369-29371
N	366	T366W		nonsyn	ACA	TGG	1	1	1	29369-29371

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	366	T366I	aCa	aTa	13078	13088	All	0.002501
N	366	T366I	aCA	aTT	8	13088	All	0.000002
N	366	T366I	aCA	aTC	2	13088	All	0
N	366	T366I	aCa	aTa	2703	2703	C.37	0.313719
N	366	T366I	aCa	aTa	1780	1786	B.1.1.7	0.001593
N	366	T366I	aCA	aTT	4	1786	B.1.1.7	0.000004
N	366	T366I	aCA	aTC	2	1786	B.1.1.7	0.000002
N	366	T366T	acA	acG	958	1212	All	0.000183
N	366	T366T	acA	acT	181	1212	All	0.000035
N	366	T366T	acA	acC	73	1212	All	0.000014
N	366	T366I	aCa	aTa	1016	1016	AY.4	0.001581
N	366	T366I	aCa	aTa	996	996	B.1.1.348	0.792994
N	366	T366I	aCa	aTa	789	789	AY.4.2	0.017112
N	366	T366T	acA	acG	749	749	AY.118	0.046924
N	366	T366A	Aca	Gca	524	531	All	0.0001
N	366	T366A	AcA	GcC	4	531	All	0.000001
N	366	T366A	AcA	GcT	2	531	All	0
N	366	T366A	AcA	GcG	1	531	All	0
N	366	T366I	aCa	aTa	484	484	Q.1	0.061142
N	366	T366I	aCa	aTa	450	450	AY.103	0.002794
N	366	T366I	aCa	aTa	388	388	AY.3	0.003859
N	366	T366A	Aca	Gca	329	336	B.1.1.7	0.000295
N	366	T366A	AcA	GcC	4	336	B.1.1.7	0.000004
N	366	T366A	AcA	GcT	2	336	B.1.1.7	0.000002
N	366	T366A	AcA	GcG	1	336	B.1.1.7	0.000001
N	366	T366I	aCa	aTa	332	332	AY.43	0.001471
N	366	T366I	aCa	aTa	296	296	B.1.596	0.025793
N	366	T366I	aCa	aTa	266	266	B.1.1	0.004825
N	366	T366I	aCa	aTa	228	228	AY.74	0.026368
N	366	T366I	aCa	aTa	221	221	B.1	0.002024
N	366	T366I	aCa	aTa	219	219	AY.44	0.001333
N	366	T366T	acA	acT	126	218	B.1.1.7	0.000113
N	366	T366T	acA	acG	80	218	B.1.1.7	0.000072
N	366	T366T	acA	acC	12	218	B.1.1.7	0.000011
N	366	T366I	aCa	aTa	214	214	B.1.2	0.001884
N	366	T366I	aCa	aTa	199	199	C.37.1	0.520942
N	366	T366S	Aca	Tca	142	152	All	0.000027
N	366	T366S	AcA	TcT	3	152	All	0.000001
N	366	T366S	AcA	TcC	3	152	All	0.000001
N	366	T366S	aCA	aGC	2	152	All	0
N	366	T366S	AcA	TcG	1	152	All	0
N	366	T366S	aCA	aGT	1	152	All	0
N	366	T366I	aCa	aTa	147	147	B.1.617.2	0.000554
N	366	T366R	aCa	aGa	105	116	All	0.00002
N	366	T366R	ACa	CGa	5	116	All	0.000001
N	366	T366R	aCA	aGG	3	116	All	0.000001
N	366	T366R	ACA	CGG	2	116	All	0
N	366	T366R	ACA	CGC	1	116	All	0
N	366	T366P	Aca	Cca	102	106	All	0.00002
N	366	T366P	AcA	CcT	2	106	All	0
N	366	T366P	AcA	CcC	2	106	All	0
N	366	T366S	Aca	Tca	103	103	AY.103	0.00064
N	366	T366I	aCa	aTa	99	100	AY.25	0.000595
N	366	T366I	aCA	aTT	1	100	AY.25	0.000006
N	366	T366I	aCa	aTa	96	96	B.1.177	0.001264
N	366	T366K	aCa	aAa	74	82	All	0.000014
N	366	T366K	aCA	aAG	8	82	All	0.000002
N	366	T366I	aCa	aTa	81	81	P.1	0.001276
N	366	T366I	aCa	aTa	74	74	B.1.1.176	0.032513
N	366	T366I	aCa	aTa	72	72	B.1.428	0.073469
N	366	T366del	ACA	---	68	68	All	0.000013
N	366	T366I	aCa	aTa	68	68	B.1.526	0.001598
N	366	T366I	aCa	aTa	62	62	R.1	0.005581
N	366	T366I	aCa	aTa	61	61	B.1.428.3	0.782051
N	366	T366I	aCa	aTa	58	58	B.1.177.82	0.027685
N	366	T366I	aCa	aTa	56	56	B.1.351	0.001665
N	366	T366I	aCa	aTa	54	54	AY.120	0.002008
N	366	T366I	aCa	aTa	51	51	B.1.177.81	0.009655
N	366	T366R	aCa	aGa	51	51	B.1.181	1
N	366	T366P	Aca	Cca	51	51	B.1.240	0.010994
N	366	T366I	aCa	aTa	46	46	AY.30	0.018203
N	366	T366I	aCa	aTa	45	45	AY.27	0.002912
N	366	T366K	aCa	aAa	37	44	B.1.1.7	0.000033
N	366	T366K	aCA	aAG	7	44	B.1.1.7	0.000006
N	366	T366I	aCa	aTa	43	43	AY.13	0.006922
N	366	T366T	acA	acC	43	43	R.1	0.00387
N	366	T366A	Aca	Gca	42	42	B.1.2	0.00037
N	366	T366I	aCa	aTa	39	39	AY.5	0.000805
N	366	T366I	aCa	aTa	39	39	AY.7.1	0.004395
N	366	T366I	aCa	aTa	37	37	AY.26	0.001047
N	366	T366I	aCa	aTa	37	37	AY.29	0.000584
N	366	T366I	aCa	aTa	35	35	AY.20	0.00136
N	366	T366I	aCa	aTa	32	32	AY.39.1	0.001268
N	366	T366I	aCa	aTa	31	31	C.36	0.028233
N	366	T366I	aCa	aTa	30	30	B.1.177.46	0.027548
N	366	T366I	aCa	aTa	29	30	B.1.429	0.000682
N	366	T366I	aCA	aTT	1	30	B.1.429	0.000024
N	366	T366I	aCa	aTa	29	29	AY.24	0.0125
N	366	T366X	ACa	TAa	18	28	All	0.000003
N	366	T366X	ACa	TGa	5	28	All	0.000001
N	366	T366X	ACA	TAG	5	28	All	0.000001
N	366	T366I	aCa	aTa	28	28	B.1.160	0.000873
N	366	T366I	aCa	aTa	27	27	B.1.601	0.818182
N	366	T366I	aCa	aTa	26	26	AY.33	0.001736
N	366	T366A	Aca	Gca	26	26	B.1.427	0.001313
N	366	T366R	aCa	aGa	25	25	B.1.346	0.032765
N	366	T366I	aCa	aTa	24	24	AY.75	0.001345
N	366	T366I	aCa	aTa	24	24	B.1.1.519	0.000953
N	366	T366I	aCa	aTa	24	24	B.1.427	0.001212
N	366	T366I	aCa	aTa	24	24	B.1.577	0.016495
N	366	T366X	ACa	TAa	14	23	B.1.1.7	0.000013
N	366	T366X	ACa	TGa	5	23	B.1.1.7	0.000004
N	366	T366X	ACA	TAG	4	23	B.1.1.7	0.000004
N	366	T366R	aCa	aGa	11	22	B.1.1.7	0.00001
N	366	T366R	ACa	CGa	5	22	B.1.1.7	0.000004
N	366	T366R	aCA	aGG	3	22	B.1.1.7	0.000003
N	366	T366R	ACA	CGG	2	22	B.1.1.7	0.000002
N	366	T366R	ACA	CGC	1	22	B.1.1.7	0.000001
N	366	T366T	acA	acT	10	21	AY.25	0.00006
N	366	T366T	acA	acG	10	21	AY.25	0.00006
N	366	T366T	acA	acC	1	21	AY.25	0.000006
N	366	T366I	aCa	aTa	21	21	B.1.1.222	0.004284
N	366	T366N	aCA	aAT	13	20	All	0.000002
N	366	T366N	aCA	aAC	7	20	All	0.000001
N	366	T366I	aCa	aTa	20	20	AY.61	0.002096
N	366	T366I	aCa	aTa	20	20	B.1.595	0.005219
N	366	T366S	Aca	Tca	10	19	B.1.1.7	0.000009
N	366	T366S	AcA	TcC	3	19	B.1.1.7	0.000003
N	366	T366S	aCA	aGC	2	19	B.1.1.7	0.000002
N	366	T366S	AcA	TcT	2	19	B.1.1.7	0.000002
N	366	T366S	AcA	TcG	1	19	B.1.1.7	0.000001
N	366	T366S	aCA	aGT	1	19	B.1.1.7	0.000001
N	366	T366N	aCA	aAT	11	18	B.1.1.7	0.00001
N	366	T366N	aCA	aAC	7	18	B.1.1.7	0.000006
N	366	T366E	ACa	GAa	14	17	All	0.000003
N	366	T366E	ACA	GAG	3	17	All	0.000001
N	366	T366T	acA	acG	15	17	AY.44	0.000091
N	366	T366T	acA	acC	2	17	AY.44	0.000012
N	366	T366I	aCa	aTa	17	17	AY.54	0.001621
N	366	T366I	aCa	aTa	17	17	B.1.637	0.001242
N	366	T366I	aCa	aTa	17	17	P.1.14	0.000813
N	366	T366Q	ACa	CAa	14	16	All	0.000003
N	366	T366L	ACa	TTa	6	16	All	0.000001
N	366	T366L	ACa	CTa	4	16	All	0.000001
N	366	T366L	ACA	TTG	3	16	All	0.000001
N	366	T366Q	ACA	CAG	2	16	All	0
N	366	T366L	ACA	CTT	2	16	All	0
N	366	T366L	ACA	CTG	1	16	All	0
N	366	T366P	Aca	Cca	16	16	AY.41	0.004703
N	366	T366T	acA	acG	16	16	B.1.160	0.000499
N	366	T366A	Aca	Gca	16	16	B.1.596	0.001394
N	366	T366I	aCa	aTa	15	15	AY.119	0.00053
N	366	T366I	aCa	aTa	15	15	AY.39	0.000371
N	366	T366A	Aca	Gca	15	15	AY.4	0.000023
N	366	T366T	acA	acT	7	15	AY.4	0.000011
N	366	T366T	acA	acG	7	15	AY.4	0.000011
N	366	T366T	acA	acC	1	15	AY.4	0.000002
N	366	T366Q	ACa	CAa	13	15	B.1.1.7	0.000012
N	366	T366E	ACa	GAa	12	15	B.1.1.7	0.000011
N	366	T366E	ACA	GAG	3	15	B.1.1.7	0.000003
N	366	T366Q	ACA	CAG	2	15	B.1.1.7	0.000002
N	366	T366A	Aca	Gca	15	15	D.3	0.088757
N	366	T366I	aCa	aTa	14	14	AY.116	0.004015
N	366	T366L	ACa	TTa	5	14	B.1.1.7	0.000004
N	366	T366L	ACa	CTa	4	14	B.1.1.7	0.000004
N	366	T366L	ACA	TTG	2	14	B.1.1.7	0.000002
N	366	T366L	ACA	CTT	2	14	B.1.1.7	0.000002
N	366	T366L	ACA	CTG	1	14	B.1.1.7	0.000001
N	366	T366A	Aca	Gca	14	14	B.1.617.2	0.000053
N	366	T366I	aCa	aTa	14	14	P.1.7	0.00447
N	366	T366I	aCa	aTa	13	13	B.1.177.44	0.006746
N	366	T366I	aCa	aTa	12	12	AY.102	0.000318
N	366	T366I	aCa	aTa	12	12	AY.117	0.001014
N	366	T366I	aCa	aTa	12	12	AY.42	0.000483
N	366	T366I	aCa	aTa	11	11	AY.36	0.00163
N	366	T366S	Aca	Tca	11	11	AY.4	0.000017
N	366	T366P	Aca	Cca	7	11	B.1.1.7	0.000006
N	366	T366P	AcA	CcC	2	11	B.1.1.7	0.000002
N	366	T366P	AcA	CcT	2	11	B.1.1.7	0.000002
N	366	T366I	aCa	aTa	11	11	B.1.617.1	0.001419
N	366	T366T	acA	acG	7	11	B.1.617.2	0.000026
N	366	T366T	acA	acT	4	11	B.1.617.2	0.000015
N	366	T366del	ACA	---	11	11	B.1.621	0.000974
N	366	T366V	ACa	GTa	6	10	All	0.000001
N	366	T366V	ACA	GTG	2	10	All	0
N	366	T366V	ACA	GTT	2	10	All	0
N	366	T366S	Aca	Tca	10	10	AY.118	0.000626
N	366	T366I	aCa	aTa	10	10	AY.3.1	0.000853
N	366	T366del	ACA	---	10	10	B.1.1.7	0.000009
N	366	T366A	Aca	Gca	10	10	B.1.160	0.000312
N	366	T366I	aCa	aTa	10	10	B.1.22	0.013175
N	366	T366I	aCa	aTa	10	10	B.1.621	0.000885
N	366	T366Y	ACA	TAT	5	9	All	0.000001
N	366	T366Y	ACA	TAC	4	9	All	0.000001
N	366	T366I	aCa	aTa	9	9	AY.23	0.000628
N	366	T366T	acA	acT	9	9	AY.99.2	0.000829
N	366	T366I	aCa	aTa	9	9	B.1.1.291	0.006682
N	366	T366I	aCa	aTa	9	9	B.1.1.307	0.022785
N	366	T366T	acA	acG	6	9	B.1.2	0.000053
N	366	T366T	acA	acT	2	9	B.1.2	0.000018
N	366	T366T	acA	acC	1	9	B.1.2	0.000009
N	366	T366I	aCa	aTa	9	9	B.1.241	0.007305
N	366	T366I	aCa	aTa	9	9	B.1.243	0.000626
N	366	T366del1	acA	ac-	6	8	All	0.000001
N	366	T366D	ACA	GAC	4	8	All	0.000001
N	366	T366D	ACA	GAT	4	8	All	0.000001
N	366	T366H	ACA	CAC	4	8	All	0.000001
N	366	T366H	ACA	CAT	4	8	All	0.000001
N	366	T366del1	aCa	a-a	1	8	All	0
N	366	T366del1	Aca	-ca	1	8	All	0
N	366	T366R	aCa	aGa	8	8	B.1	0.000073
N	366	T366K	aCa	aAa	8	8	B.1	0.000073
N	366	T366I	aCa	aTa	8	8	B.1.1.63	0.003086
N	366	T366Y	ACA	TAT	4	8	B.1.1.7	0.000004
N	366	T366Y	ACA	TAC	4	8	B.1.1.7	0.000004
N	366	T366H	ACA	CAT	4	8	B.1.1.7	0.000004
N	366	T366H	ACA	CAC	4	8	B.1.1.7	0.000004
N	366	T366I	aCa	aTa	8	8	B.1.146	0.033898
N	366	T366I	aCa	aTa	8	8	B.1.177.21	0.000612
N	366	T366I	aCa	aTa	8	8	B.1.467	0.32
N	366	T366I	aCa	aTa	8	8	B.1.497	0.002518
N	366	T366I	aCa	aTa	7	7	AE.6	0.269231
N	366	T366I	aCa	aTa	7	7	AY.106	0.002344
N	366	T366I	aCa	aTa	7	7	AY.116.1	0.00218
N	366	T366I	aCa	aTa	7	7	AY.98	0.000553
N	366	T366del	ACA	---	7	7	B.1.1	0.000127
N	366	T366V	ACa	GTa	4	7	B.1.1.7	0.000004
N	366	T366D	ACA	GAC	4	7	B.1.1.7	0.000004
N	366	T366D	ACA	GAT	3	7	B.1.1.7	0.000003
N	366	T366V	ACA	GTG	2	7	B.1.1.7	0.000002
N	366	T366V	ACA	GTT	1	7	B.1.1.7	0.000001
N	366	T366A	Aca	Gca	7	7	B.1.526	0.000165
N	366	T366I	aCa	aTa	7	7	C.36.3	0.003971
N	366	T366I	aCa	aTa	7	7	P.2	0.001306
N	366	T366I	aCa	aTa	6	6	AY.118	0.000376
N	366	T366I	aCa	aTa	6	6	AY.37	0.001896
N	366	T366I	aCa	aTa	6	6	AY.9.2	0.00022
N	366	T366I	aCa	aTa	6	6	AY.92	0.001724
N	366	T366I	aCa	aTa	6	6	B.1.1.209	0.053571
N	366	T366T	acA	acG	6	6	B.1.1.315	0.050847
N	366	T366del	ACA	---	6	6	B.1.177	0.000079
N	366	T366I	aCa	aTa	6	6	B.1.177.58	0.007989
N	366	T366I	aCa	aTa	6	6	B.1.177.60	0.001311
N	366	T366K	aCa	aAa	6	6	B.1.2	0.000053
N	366	T366I	aCa	aTa	6	6	B.1.258.17	0.000624
N	366	T366I	aCa	aTa	6	6	B.1.265	0.007624
N	366	T366I	aCa	aTa	6	6	B.1.362.2	0.028302
N	366	T366I	aCa	aTa	6	6	B.1.565	0.004862
N	366	T366I	aCa	aTa	6	6	B.1.609	0.002876
N	366	T366G	ACa	GGa	3	5	All	0.000001
N	366	T366G	ACA	GGG	1	5	All	0
N	366	T366G	ACA	GGC	1	5	All	0
N	366	T366I	aCa	aTa	5	5	AY.34	0.000485
N	366	T366I	aCa	aTa	5	5	AY.47	0.000156
N	366	T366I	aCa	aTa	5	5	AY.48	0.002326
N	366	T366I	aCa	aTa	5	5	AY.6	0.000206
N	366	T366del	ACA	---	5	5	AY.92	0.001436
N	366	T366I	aCa	aTa	5	5	AY.99.2	0.000461
N	366	T366I	aCa	aTa	5	5	B	0.000639
N	366	T366I	aCa	aTa	5	5	B.1.1.283	0.116279
N	366	T366G	ACa	GGa	3	5	B.1.1.7	0.000003
N	366	T366G	ACA	GGG	1	5	B.1.1.7	0.000001
N	366	T366G	ACA	GGC	1	5	B.1.1.7	0.000001
N	366	T366I	aCa	aTa	5	5	B.1.126	0.006378
N	366	T366A	Aca	Gca	5	5	B.1.177	0.000066
N	366	T366T	acA	acC	4	5	B.1.177	0.000053
N	366	T366T	acA	acG	1	5	B.1.177	0.000013
N	366	T366I	aCa	aTa	5	5	B.1.177.32	0.006748
N	366	T366I	aCa	aTa	5	5	B.1.177.7	0.000824
N	366	T366I	aCa	aTa	5	5	B.1.177.84	0.033333
N	366	T366T	acA	acG	5	5	B.1.221	0.000355
N	366	T366T	acA	acT	5	5	B.1.243	0.000348
N	366	T366I	aCa	aTa	5	5	B.1.258	0.000333
N	366	T366I	aCa	aTa	5	5	B.1.36.1	0.005701
N	366	T366I	aCa	aTa	5	5	B.1.499	0.005252
N	366	T366I	aCa	aTa	5	5	B.1.620	0.00473
N	366	T366I	aCa	aTa	5	5	P.1.15	0.001162
N	366	T366T	acA	acG	5	5	P.1.9	0.024038
N	366	T366I	aCA	aTT	2	4		0.111111
N	366	T366I	aCa	aTa	2	4		0.111111
N	366	T366M	aCA	aTG	4	4	All	0.000001
N	366	T366T	acA	acT	4	4	AY.100	0.000184
N	366	T366I	aCa	aTa	4	4	AY.100	0.000184
N	366	T366I	aCa	aTa	4	4	AY.107	0.001864
N	366	T366T	acA	acG	2	4	AY.3	0.00002
N	366	T366T	acA	acT	2	4	AY.3	0.00002
N	366	T366A	Aca	Gca	4	4	AY.45	0.000487
N	366	T366I	aCa	aTa	4	4	AY.69	0.000747
N	366	T366I	aCa	aTa	4	4	AY.85	0.001709
N	366	T366I	aCa	aTa	4	4	AY.9.1	0.000335
N	366	T366del	ACA	---	4	4	B.1	0.000037
N	366	T366K	aCa	aAa	4	4	B.1.1	0.000073
N	366	T366I	aCa	aTa	4	4	B.1.1.220	0.007435
N	366	T366I	aCa	aTa	4	4	B.1.1.28	0.001245
N	366	T366R	aCa	aGa	4	4	B.1.1.519	0.000159
N	366	T366I	aCa	aTa	4	4	B.1.110.3	0.002874
N	366	T366I	aCa	aTa	4	4	B.1.177.86	0.000734
N	366	T366del	ACA	---	4	4	B.1.324	0.006421
N	366	T366I	aCa	aTa	4	4	B.1.36	0.000584
N	366	T366I	aCa	aTa	4	4	B.1.627	0.008081
N	366	T366I	aCa	aTa	4	4	B.1.634	0.013699
N	366	T366I	aCa	aTa	4	4	D.2	0.0003
N	366	T366P	Aca	Cca	4	4	P.1	0.000063
N	366	T366I	aCa	aTa	3	3	A.2.5.3	0.030928
N	366	T366I	aCa	aTa	3	3	A.23.1	0.002113
N	366	T366C	ACA	TGC	2	3	All	0
N	366	T366F	ACA	TTC	2	3	All	0
N	366	T366F	ACA	TTT	1	3	All	0
N	366	T366C	ACA	TGT	1	3	All	0
N	366	T366A	Aca	Gca	3	3	AY.103	0.000019
N	366	T366T	acA	acG	3	3	AY.109	0.002219
N	366	T366I	aCa	aTa	3	3	AY.120.2.1	0.001495
N	366	T366I	aCa	aTa	3	3	AY.4.2.1	0.000447
N	366	T366I	aCa	aTa	3	3	AY.46	0.000312
N	366	T366I	aCa	aTa	3	3	AY.46.6	0.000217
N	366	T366T	acA	acG	3	3	AY.5	0.000062
N	366	T366A	Aca	Gca	3	3	AY.64	0.001786
N	366	T366I	aCa	aTa	3	3	AY.67	0.001393
N	366	T366I	aCa	aTa	3	3	AY.7	0.000588
N	366	T366I	aCa	aTa	3	3	AY.75.1	0.000541
N	366	T366P	Aca	Cca	3	3	AY.9.1	0.000251
N	366	T366I	aCa	aTa	3	3	AY.98.1	0.000145
N	366	T366I	aCa	aTa	3	3	AY.99	0.003148
N	366	T366T	acA	acT	2	3	B.1.1	0.000036
N	366	T366T	acA	acG	1	3	B.1.1	0.000018
N	366	T366I	aCa	aTa	3	3	B.1.1.1	0.00098
N	366	T366I	aCa	aTa	3	3	B.1.1.153	0.003286
N	366	T366T	acA	acG	3	3	B.1.1.214	0.000166
N	366	T366I	aCa	aTa	3	3	B.1.1.214	0.000166
N	366	T366I	aCa	aTa	3	3	B.1.1.269	0.00406
N	366	T366T	acA	acG	3	3	B.1.1.312	0.005736
N	366	T366I	aCa	aTa	3	3	B.1.1.416	0.002715
N	366	T366I	aCa	aTa	3	3	B.1.1.417	0.008108
N	366	T366M	aCA	aTG	3	3	B.1.1.7	0.000003
N	366	T366F	ACA	TTC	2	3	B.1.1.7	0.000002
N	366	T366C	ACA	TGC	2	3	B.1.1.7	0.000002
N	366	T366C	ACA	TGT	1	3	B.1.1.7	0.000001
N	366	T366F	ACA	TTT	1	3	B.1.1.7	0.000001
N	366	T366I	aCa	aTa	3	3	B.1.177.12	0.000455
N	366	T366I	aCa	aTa	3	3	B.1.214.3	0.021429
N	366	T366I	aCa	aTa	3	3	B.1.232	0.001612
N	366	T366I	aCa	aTa	3	3	B.1.311	0.000824
N	366	T366I	aCa	aTa	3	3	B.1.350	0.008798
N	366	T366I	aCa	aTa	3	3	B.1.36.27	0.00229
N	366	T366I	aCa	aTa	3	3	B.1.576	0.00272
N	366	T366I	aCa	aTa	3	3	B.1.580	0.012195
N	366	T366I	aCa	aTa	3	3	B.1.628	0.001057
N	366	T366K	aCa	aAa	3	3	B.1.637	0.000219
N	366	T366I	aCa	aTa	3	3	B.3	0.002492
N	366	T366I	aCa	aTa	3	3	C.35	0.002322
N	366	T366K	aCa	aAa	2	3	P.1	0.000032
N	366	T366K	aCA	aAG	1	3	P.1	0.000016
N	366	T366I	aCa	aTa	3	3	P.1.2	0.003468
N	366	T366I	aCa	aTa	3	3	Q.7	0.003333
N	366	T366del	ACA	---	2	2		0.111111
N	366	T366T	acA	acT	2	2		0.111111
N	366	T366I	aCa	aTa	2	2	A	0.000774
N	366	T366I	aCa	aTa	2	2	A.2.5	0.000998
N	366	T366I	aCa	aTa	2	2	AE.8	0.000978
N	366	T366I	aCa	aTa	2	2	AY.110	0.000225
N	366	T366A	Aca	Gca	2	2	AY.118	0.000125
N	366	T366T	acA	acC	2	2	AY.119	0.000071
N	366	T366I	aCa	aTa	2	2	AY.16	0.000759
N	366	T366I	aCa	aTa	2	2	AY.16.1	0.00094
N	366	T366K	aCa	aAa	2	2	AY.25	0.000012
N	366	T366A	Aca	Gca	2	2	AY.25	0.000012
N	366	T366V	ACa	GTa	1	2	AY.25	0.000006
N	366	T366V	ACA	GTT	1	2	AY.25	0.000006
N	366	T366I	aCa	aTa	2	2	AY.29.1	0.000441
N	366	T366T	acA	acG	1	2	AY.3.1	0.000085
N	366	T366T	acA	acC	1	2	AY.3.1	0.000085
N	366	T366I	aCa	aTa	2	2	AY.32	0.001065
N	366	T366S	Aca	Tca	2	2	AY.33	0.000134
N	366	T366I	aCa	aTa	2	2	AY.38	0.000999
N	366	T366T	acA	acC	2	2	AY.39	0.000049
N	366	T366P	Aca	Cca	2	2	AY.4	0.000003
N	366	T366T	acA	acG	2	2	AY.42	0.00008
N	366	T366P	Aca	Cca	2	2	AY.43	0.000009
N	366	T366A	Aca	Gca	2	2	AY.43	0.000009
N	366	T366T	acA	acT	1	2	AY.43	0.000004
N	366	T366T	acA	acG	1	2	AY.43	0.000004
N	366	T366I	aCa	aTa	2	2	AY.45	0.000243
N	366	T366I	aCa	aTa	2	2	AY.59	0.001059
N	366	T366I	aCa	aTa	2	2	AY.88	0.001768
N	366	T366A	Aca	Gca	2	2	B.1	0.000018
N	366	T366T	acA	acG	2	2	B.1	0.000018
N	366	T366A	Aca	Gca	2	2	B.1.1	0.000036
N	366	T366S	AcA	TcT	1	2	B.1.1	0.000018
N	366	T366S	Aca	Tca	1	2	B.1.1	0.000018
N	366	T366I	aCa	aTa	2	2	B.1.1.161	0.007067
N	366	T366I	aCa	aTa	2	2	B.1.1.171	0.007353
N	366	T366I	aCa	aTa	2	2	B.1.1.174	0.006757
N	366	T366I	aCa	aTa	2	2	B.1.1.280	0.006173
N	366	T366I	aCa	aTa	2	2	B.1.1.317	0.000823
N	366	T366A	Aca	Gca	2	2	B.1.1.322	0.017544
N	366	T366I	aCa	aTa	2	2	B.1.1.33	0.000842
N	366	T366I	aCa	aTa	2	2	B.1.1.369	0.000892
N	366	T366I	aCa	aTa	2	2	B.1.1.37	0.000386
N	366	T366I	aCa	aTa	2	2	B.1.1.372	0.001377
N	366	T366I	aCa	aTa	2	2	B.1.1.388	0.090909
N	366	T366I	aCa	aTa	2	2	B.1.1.409	0.005666
N	366	T366I	aCa	aTa	2	2	B.1.1.462	0.017241
N	366	T366T	acA	acC	1	2	B.1.1.519	0.00004
N	366	T366T	acA	acG	1	2	B.1.1.519	0.00004
N	366	T366I	aCa	aTa	2	2	B.1.177.10	0.001756
N	366	T366I	aCa	aTa	2	2	B.1.177.53	0.004785
N	366	T366I	aCa	aTa	2	2	B.1.177.77	0.001452
N	366	T366del1	acA	ac-	2	2	B.1.2	0.000018
N	366	T366I	aCa	aTa	2	2	B.1.239	0.002442
N	366	T366A	Aca	Gca	2	2	B.1.243	0.000139
N	366	T366I	aCa	aTa	2	2	B.1.245	0.0625
N	366	T366I	aCa	aTa	2	2	B.1.258.11	0.000793
N	366	T366I	aCa	aTa	2	2	B.1.36.29	0.001035
N	366	T366I	aCa	aTa	2	2	B.1.396	0.001411
N	366	T366del	ACA	---	2	2	B.1.427	0.000101
N	366	T366I	aCa	aTa	2	2	B.1.459	0.008163
N	366	T366I	aCa	aTa	2	2	B.1.525	0.000226
N	366	T366T	acA	acG	2	2	B.1.526	0.000047
N	366	T366I	aCa	aTa	2	2	B.1.551	0.002581
N	366	T366I	aCa	aTa	2	2	B.1.560	0.009259
N	366	T366A	Aca	Gca	2	2	B.1.609	0.000959
N	366	T366T	acA	acG	2	2	B.1.617.1	0.000258
N	366	T366R	aCa	aGa	2	2	B.1.621	0.000177
N	366	T366I	aCa	aTa	2	2	B.40	0.000729
N	366	T366del	ACA	---	2	2	P.1	0.000032
N	366	T366L	ACa	TTa	1	2	P.1	0.000016
N	366	T366X	ACA	TAG	1	2	P.1	0.000016
N	366	T366L	ACA	TTG	1	2	P.1	0.000016
N	366	T366X	ACa	TAa	1	2	P.1	0.000016
N	366	T366T	acA	acG	2	2	P.1.14	0.000096
N	366	T366I	aCa	aTa	1	1	A.1	0.000282
N	366	T366I	aCa	aTa	1	1	A.3	0.002096
N	366	T366I	aCa	aTa	1	1	A.5	0.001923
N	366	T366I	aCa	aTa	1	1	AD.2	0.000219
N	366	T366P	Aca	Cca	1	1	AL.1	0.012987
N	366	T366W	ACA	TGG	1	1	All	0
N	366	T366A	Aca	Gca	1	1	AY.100	0.000046
N	366	T366A	Aca	Gca	1	1	AY.102	0.000027
N	366	T366R	aCa	aGa	1	1	AY.103	0.000006
N	366	T366T	acA	acG	1	1	AY.110	0.000113
N	366	T366I	aCa	aTa	1	1	AY.111	0.000183
N	366	T366I	aCa	aTa	1	1	AY.113	0.000142
N	366	T366del	ACA	---	1	1	AY.114	0.000231
N	366	T366I	aCa	aTa	1	1	AY.114	0.000231
N	366	T366T	acA	acT	1	1	AY.116.1	0.000311
N	366	T366T	acA	acG	1	1	AY.117	0.000085
N	366	T366P	Aca	Cca	1	1	AY.118	0.000063
N	366	T366I	aCa	aTa	1	1	AY.120.1	0.000321
N	366	T366I	aCa	aTa	1	1	AY.120.2	0.001285
N	366	T366T	acA	acG	1	1	AY.13	0.000161
N	366	T366I	aCa	aTa	1	1	AY.14	0.000088
N	366	T366T	acA	acG	1	1	AY.14	0.000088
N	366	T366I	aCa	aTa	1	1	AY.15	0.002222
N	366	T366A	Aca	Gca	1	1	AY.20	0.000039
N	366	T366D	ACA	GAT	1	1	AY.25	0.000006
N	366	T366del	ACA	---	1	1	AY.25	0.000006
N	366	T366E	ACa	GAa	1	1	AY.25	0.000006
N	366	T366P	Aca	Cca	1	1	AY.25	0.000006
N	366	T366N	aCA	aAT	1	1	AY.25	0.000006
N	366	T366T	acA	acC	1	1	AY.26	0.000028
N	366	T366A	Aca	Gca	1	1	AY.26	0.000028
N	366	T366K	aCa	aAa	1	1	AY.26	0.000028
N	366	T366R	aCa	aGa	1	1	AY.29.1	0.000221
N	366	T366A	Aca	Gca	1	1	AY.3	0.00001
N	366	T366A	Aca	Gca	1	1	AY.3.1	0.000085
N	366	T366S	Aca	Tca	1	1	AY.32	0.000532
N	366	T366T	acA	acG	1	1	AY.33	0.000067
N	366	T366I	aCa	aTa	1	1	AY.35	0.000233
N	366	T366A	Aca	Gca	1	1	AY.35	0.000233
N	366	T366T	acA	acG	1	1	AY.36	0.000148
N	366	T366P	Aca	Cca	1	1	AY.39	0.000025
N	366	T366A	Aca	Gca	1	1	AY.39	0.000025
N	366	T366del1	acA	ac-	1	1	AY.39	0.000025
N	366	T366P	Aca	Cca	1	1	AY.4.2.1	0.000149
N	366	T366I	aCa	aTa	1	1	AY.4.5	0.000107
N	366	T366T	acA	acG	1	1	AY.4.5	0.000107
N	366	T366del	ACA	---	1	1	AY.43	0.000004
N	366	T366K	aCa	aAa	1	1	AY.43	0.000004
N	366	T366del1	acA	ac-	1	1	AY.44	0.000006
N	366	T366T	acA	acG	1	1	AY.45	0.000122
N	366	T366I	aCa	aTa	1	1	AY.46.1	0.001027
N	366	T366T	acA	acG	1	1	AY.46.3	0.000934
N	366	T366I	aCa	aTa	1	1	AY.46.4	0.000165
N	366	T366T	acA	acG	1	1	AY.46.4	0.000165
N	366	T366T	acA	acC	1	1	AY.48	0.000465
N	366	T366P	Aca	Cca	1	1	AY.5	0.000021
N	366	T366I	aCa	aTa	1	1	AY.5.3	0.000337
N	366	T366I	aCa	aTa	1	1	AY.52	0.000814
N	366	T366I	aCa	aTa	1	1	AY.53	0.000288
N	366	T366P	Aca	Cca	1	1	AY.53	0.000288
N	366	T366S	Aca	Tca	1	1	AY.54	0.000095
N	366	T366I	aCa	aTa	1	1	AY.55	0.000917
N	366	T366I	aCa	aTa	1	1	AY.58	0.000907
N	366	T366I	aCa	aTa	1	1	AY.62	0.000436
N	366	T366del	ACA	---	1	1	AY.67	0.000464
N	366	T366I	aCa	aTa	1	1	AY.68	0.000274
N	366	T366I	aCa	aTa	1	1	AY.70	0.000209
N	366	T366I	aCa	aTa	1	1	AY.72	0.001361
N	366	T366I	aCa	aTa	1	1	AY.73	0.000665
N	366	T366P	Aca	Cca	1	1	AY.75	0.000056
N	366	T366T	acA	acG	1	1	AY.75	0.000056
N	366	T366I	aCa	aTa	1	1	AY.76	0.004831
N	366	T366I	aCa	aTa	1	1	AY.79	0.001211
N	366	T366T	acA	acT	1	1	AY.84	0.000437
N	366	T366I	aCa	aTa	1	1	AY.9	0.000068
N	366	T366del1	aCa	a-a	1	1	AY.9.2	0.000037
N	366	T366I	aCa	aTa	1	1	AY.91	0.00073
N	366	T366I	aCa	aTa	1	1	AY.95	0.000761
N	366	T366A	Aca	Gca	1	1	AY.98	0.000079
N	366	T366A	Aca	Gca	1	1	AY.98.1	0.000048
N	366	T366T	acA	acG	1	1	AY.98.1	0.000048
N	366	T366T	acA	acG	1	1	B	0.000128
N	366	T366P	Aca	Cca	1	1	B.1	0.000009
N	366	T366X	ACa	TAa	1	1	B.1.1	0.000018
N	366	T366Y	ACA	TAT	1	1	B.1.1	0.000018
N	366	T366N	aCA	aAT	1	1	B.1.1	0.000018
N	366	T366I	aCa	aTa	1	1	B.1.1.13	0.035714
N	366	T366I	aCa	aTa	1	1	B.1.1.138	0.006061
N	366	T366del	ACA	---	1	1	B.1.1.139	0.022727
N	366	T366I	aCa	aTa	1	1	B.1.1.141	0.002012
N	366	T366T	acA	acG	1	1	B.1.1.153	0.001095
N	366	T366I	aCa	aTa	1	1	B.1.1.180	0.010753
N	366	T366A	Aca	Gca	1	1	B.1.1.181	0.004545
N	366	T366I	aCa	aTa	1	1	B.1.1.194	0.00495
N	366	T366I	aCa	aTa	1	1	B.1.1.207	0.001182
N	366	T366K	aCa	aAa	1	1	B.1.1.214	0.000055
N	366	T366K	aCa	aAa	1	1	B.1.1.25	0.000569
N	366	T366T	acA	acT	1	1	B.1.1.27	0.00565
N	366	T366I	aCa	aTa	1	1	B.1.1.284	0.000107
N	366	T366I	aCa	aTa	1	1	B.1.1.294	0.001266
N	366	T366I	aCa	aTa	1	1	B.1.1.301	0.001179
N	366	T366I	aCa	aTa	1	1	B.1.1.302	0.002075
N	366	T366I	aCa	aTa	1	1	B.1.1.305	0.003861
N	366	T366del	ACA	---	1	1	B.1.1.317	0.000412
N	366	T366A	Aca	Gca	1	1	B.1.1.318	0.000302
N	366	T366I	aCa	aTa	1	1	B.1.1.319	0.017544
N	366	T366I	aCa	aTa	1	1	B.1.1.320	0.018182
N	366	T366K	aCa	aAa	1	1	B.1.1.33	0.000421
N	366	T366del	ACA	---	1	1	B.1.1.37	0.000193
N	366	T366I	aCa	aTa	1	1	B.1.1.396	0.045455
N	366	T366I	aCa	aTa	1	1	B.1.1.398	0.003226
N	366	T366I	aCa	aTa	1	1	B.1.1.406	0.006494
N	366	T366T	acA	acG	1	1	B.1.1.407	0.041667
N	366	T366I	aCa	aTa	1	1	B.1.1.442	0.018519
N	366	T366I	aCa	aTa	1	1	B.1.1.464	0.001473
N	366	T366I	aCa	aTa	1	1	B.1.1.486	0.001577
N	366	T366I	aCa	aTa	1	1	B.1.1.487	0.005587
N	366	T366I	aCa	aTa	1	1	B.1.1.514	0.038462
N	366	T366S	Aca	Tca	1	1	B.1.1.63	0.000386
N	366	T366W	ACA	TGG	1	1	B.1.1.7	0.000001
N	366	T366I	aCa	aTa	1	1	B.1.1.90	0.1
N	366	T366P	Aca	Cca	1	1	B.1.13	0.002375
N	366	T366I	aCa	aTa	1	1	B.1.134	0.005464
N	366	T366K	aCa	aAa	1	1	B.1.160	0.000031
N	366	T366I	aCa	aTa	1	1	B.1.160.14	0.002119
N	366	T366P	Aca	Cca	1	1	B.1.160.16	0.000929
N	366	T366I	aCa	aTa	1	1	B.1.160.26	0.002421
N	366	T366I	aCa	aTa	1	1	B.1.160.32	0.004292
N	366	T366del	ACA	---	1	1	B.1.162	0.005025
N	366	T366P	Aca	Cca	1	1	B.1.177.10	0.000878
N	366	T366T	acA	acG	1	1	B.1.177.21	0.000076
N	366	T366I	aCa	aTa	1	1	B.1.177.33	0.001645
N	366	T366A	Aca	Gca	1	1	B.1.177.4	0.000211
N	366	T366del1	Aca	-ca	1	1	B.1.177.45	0.000381
N	366	T366I	aCa	aTa	1	1	B.1.177.48	0.003125
N	366	T366T	acA	acG	1	1	B.1.177.54	0.000606
N	366	T366I	aCa	aTa	1	1	B.1.177.54	0.000606
N	366	T366A	Aca	Gca	1	1	B.1.177.60	0.000218
N	366	T366I	aCa	aTa	1	1	B.1.177.63	0.002703
N	366	T366A	Aca	Gca	1	1	B.1.177.7	0.000165
N	366	T366I	aCa	aTa	1	1	B.1.177.70	0.005917
N	366	T366I	aCa	aTa	1	1	B.1.177.79	0.002342
N	366	T366I	aCa	aTa	1	1	B.1.177.8	0.000752
N	366	T366I	aCa	aTa	1	1	B.1.177.9	0.001332
N	366	T366I	aCa	aTa	1	1	B.1.199	0.004132
N	366	T366del	ACA	---	1	1	B.1.2	0.000009
N	366	T366R	aCa	aGa	1	1	B.1.2	0.000009
N	366	T366X	ACa	TAa	1	1	B.1.2	0.000009
N	366	T366S	Aca	Tca	1	1	B.1.2	0.000009
N	366	T366I	aCa	aTa	1	1	B.1.214.1	0.02
N	366	T366S	Aca	Tca	1	1	B.1.221	0.000071
N	366	T366K	aCa	aAa	1	1	B.1.221	0.000071
N	366	T366Q	ACa	CAa	1	1	B.1.221	0.000071
N	366	T366X	ACa	TAa	1	1	B.1.221	0.000071
N	366	T366del	ACA	---	1	1	B.1.221	0.000071
N	366	T366P	Aca	Cca	1	1	B.1.221	0.000071
N	366	T366I	aCa	aTa	1	1	B.1.221	0.000071
N	366	T366I	aCa	aTa	1	1	B.1.221.3	0.000833
N	366	T366A	Aca	Gca	1	1	B.1.222	0.001692
N	366	T366I	aCa	aTa	1	1	B.1.23	0.006061
N	366	T366I	aCa	aTa	1	1	B.1.240	0.000216
N	366	T366T	acA	acC	1	1	B.1.240	0.000216
N	366	T366T	acA	acG	1	1	B.1.258	0.000067
N	366	T366I	aCa	aTa	1	1	B.1.349	0.000715
N	366	T366del	ACA	---	1	1	B.1.351	0.00003
N	366	T366T	acA	acT	1	1	B.1.351	0.00003
N	366	T366K	aCa	aAa	1	1	B.1.351	0.00003
N	366	T366I	aCa	aTa	1	1	B.1.355	0.011111
N	366	T366I	aCa	aTa	1	1	B.1.36.36	0.000602
N	366	T366I	aCa	aTa	1	1	B.1.36.39	0.002217
N	366	T366I	aCa	aTa	1	1	B.1.369	0.000285
N	366	T366I	aCa	aTa	1	1	B.1.370	0.008
N	366	T366I	aCa	aTa	1	1	B.1.371	0.001122
N	366	T366I	aCa	aTa	1	1	B.1.400	0.000429
N	366	T366I	aCa	aTa	1	1	B.1.409	0.000781
N	366	T366del	ACA	---	1	1	B.1.415	0.014286
N	366	T366I	aCa	aTa	1	1	B.1.426	0.001009
N	366	T366K	aCa	aAa	1	1	B.1.438.1	0.000107
N	366	T366I	aCa	aTa	1	1	B.1.470	0.001404
N	366	T366I	aCa	aTa	1	1	B.1.503	0.002488
N	366	T366del	ACA	---	1	1	B.1.526	0.000024
N	366	T366I	aCa	aTa	1	1	B.1.533	0.009615
N	366	T366I	aCa	aTa	1	1	B.1.535	0.028571
N	366	T366I	aCa	aTa	1	1	B.1.564	0.000426
N	366	T366K	aCa	aAa	1	1	B.1.564.1	0.001577
N	366	T366T	acA	acG	1	1	B.1.572	0.025
N	366	T366I	aCa	aTa	1	1	B.1.586	0.010989
N	366	T366A	Aca	Gca	1	1	B.1.589	0.007576
N	366	T366P	Aca	Cca	1	1	B.1.596	0.000087
N	366	T366I	aCa	aTa	1	1	B.1.597	0.00463
N	366	T366P	Aca	Cca	1	1	B.1.612	0.002653
N	366	T366I	aCa	aTa	1	1	B.1.615	0.04
N	366	T366P	Aca	Cca	1	1	B.1.617.2	0.000004
N	366	T366del1	acA	ac-	1	1	B.1.617.2	0.000004
N	366	T366K	aCa	aAa	1	1	B.1.617.2	0.000004
N	366	T366I	aCa	aTa	1	1	B.1.618	0.004032
N	366	T366I	aCa	aTa	1	1	B.1.619	0.000871
N	366	T366T	acA	acG	1	1	B.1.623	0.000536
N	366	T366del	ACA	---	1	1	B.1.630	0.005236
N	366	T366I	aCa	aTa	1	1	B.1.76	0.011364
N	366	T366A	Aca	Gca	1	1	B.1.8	0.001972
N	366	T366I	aCa	aTa	1	1	B.1.9.4	0.006135
N	366	T366I	aCa	aTa	1	1	B.20	0.023256
N	366	T366I	aCa	aTa	1	1	B.6	0.00091
N	366	T366I	aCa	aTa	1	1	B.6.8	0.008264
N	366	T366I	aCa	aTa	1	1	C.1.2	0.004255
N	366	T366T	acA	acT	1	1	C.36	0.000911
N	366	T366T	acA	acG	1	1	C.36.3	0.000567
N	366	T366del	ACA	---	1	1	C.37	0.000116
N	366	T366K	aCa	aAa	1	1	C.37	0.000116
N	366	T366del1	acA	ac-	1	1	C.37	0.000116
N	366	T366T	acA	acG	1	1	C.37	0.000116
N	366	T366E	ACa	GAa	1	1	C.37	0.000116
N	366	T366V	ACa	GTa	1	1	C.37	0.000116
N	366	T366P	Aca	Cca	1	1	D.2	0.000075
N	366	T366T	acA	acT	1	1	D.2	0.000075
N	366	T366A	Aca	Gca	1	1	P.1	0.000016
N	366	T366R	aCa	aGa	1	1	P.1	0.000016
N	366	T366T	acA	acG	1	1	P.1	0.000016
N	366	T366M	aCA	aTG	1	1	P.1	0.000016
N	366	T366I	aCa	aTa	1	1	P.1.1	0.000318
N	366	T366I	aCa	aTa	1	1	P.1.16	0.000374
N	366	T366T	acA	acT	1	1	P.1.17	0.000162
N	366	T366I	aCa	aTa	1	1	P.1.17	0.000162
N	366	T366I	aCa	aTa	1	1	P.1.4	0.000977
N	366	T366I	aCa	aTa	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.