CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 366 | T366I | nonsyn | aCa | aTa | 13088 | 13078 | 0.999236 | 29369-29371 | |
N | 366 | T366I | nonsyn | aCA | aTT | 13088 | 8 | 0.000611247 | 29369-29371 | |
N | 366 | T366I | nonsyn | aCA | aTC | 13088 | 2 | 0.000152812 | 29369-29371 | |
N | 366 | T366T | syn | acA | acG | 1212 | 958 | 0.790429 | 29369-29371 | |
N | 366 | T366T | syn | acA | acT | 1212 | 181 | 0.14934 | 29369-29371 | |
N | 366 | T366T | syn | acA | acC | 1212 | 73 | 0.060231 | 29369-29371 | |
N | 366 | T366A | nonsyn | Aca | Gca | 531 | 524 | 0.986817 | 29369-29371 | |
N | 366 | T366A | nonsyn | AcA | GcC | 531 | 4 | 0.00753296 | 29369-29371 | |
N | 366 | T366A | nonsyn | AcA | GcT | 531 | 2 | 0.00376648 | 29369-29371 | |
N | 366 | T366A | nonsyn | AcA | GcG | 531 | 1 | 0.00188324 | 29369-29371 | |
N | 366 | T366S | nonsyn | Aca | Tca | 152 | 142 | 0.934211 | 29369-29371 | |
N | 366 | T366S | nonsyn | AcA | TcT | 152 | 3 | 0.0197368 | 29369-29371 | |
N | 366 | T366S | nonsyn | AcA | TcC | 152 | 3 | 0.0197368 | 29369-29371 | |
N | 366 | T366S | nonsyn | aCA | aGC | 152 | 2 | 0.0131579 | 29369-29371 | |
N | 366 | T366S | nonsyn | aCA | aGT | 152 | 1 | 0.00657895 | 29369-29371 | |
N | 366 | T366S | nonsyn | AcA | TcG | 152 | 1 | 0.00657895 | 29369-29371 | |
N | 366 | T366R | nonsyn | aCa | aGa | 116 | 105 | 0.905172 | 29369-29371 | |
N | 366 | T366R | nonsyn | ACa | CGa | 116 | 5 | 0.0431034 | 29369-29371 | |
N | 366 | T366R | nonsyn | aCA | aGG | 116 | 3 | 0.0258621 | 29369-29371 | |
N | 366 | T366R | nonsyn | ACA | CGG | 116 | 2 | 0.0172414 | 29369-29371 | |
N | 366 | T366R | nonsyn | ACA | CGC | 116 | 1 | 0.00862069 | 29369-29371 | |
N | 366 | T366P | nonsyn | Aca | Cca | 106 | 102 | 0.962264 | 29369-29371 | |
N | 366 | T366P | nonsyn | AcA | CcT | 106 | 2 | 0.0188679 | 29369-29371 | |
N | 366 | T366P | nonsyn | AcA | CcC | 106 | 2 | 0.0188679 | 29369-29371 | |
N | 366 | T366K | nonsyn | aCa | aAa | 82 | 74 | 0.902439 | 29369-29371 | |
N | 366 | T366K | nonsyn | aCA | aAG | 82 | 8 | 0.097561 | 29369-29371 | |
N | 366 | T366del | del | ACA | --- | 68 | 68 | 1 | 29369-29371 | |
N | 366 | T366X | nonsyn | ACa | TAa | 28 | 18 | 0.642857 | 29369-29371 | |
N | 366 | T366X | nonsyn | ACa | TGa | 28 | 5 | 0.178571 | 29369-29371 | |
N | 366 | T366X | nonsyn | ACA | TAG | 28 | 5 | 0.178571 | 29369-29371 | |
N | 366 | T366N | nonsyn | aCA | aAT | 20 | 13 | 0.65 | 29369-29371 | |
N | 366 | T366N | nonsyn | aCA | aAC | 20 | 7 | 0.35 | 29369-29371 | |
N | 366 | T366E | nonsyn | ACa | GAa | 17 | 14 | 0.823529 | 29369-29371 | |
N | 366 | T366E | nonsyn | ACA | GAG | 17 | 3 | 0.176471 | 29369-29371 | |
N | 366 | T366Q | nonsyn | ACa | CAa | 16 | 14 | 0.875 | 29369-29371 | |
N | 366 | T366L | nonsyn | ACa | TTa | 16 | 6 | 0.375 | 29369-29371 | |
N | 366 | T366L | nonsyn | ACa | CTa | 16 | 4 | 0.25 | 29369-29371 | |
N | 366 | T366L | nonsyn | ACA | TTG | 16 | 3 | 0.1875 | 29369-29371 | |
N | 366 | T366Q | nonsyn | ACA | CAG | 16 | 2 | 0.125 | 29369-29371 | |
N | 366 | T366L | nonsyn | ACA | CTT | 16 | 2 | 0.125 | 29369-29371 | |
N | 366 | T366L | nonsyn | ACA | CTG | 16 | 1 | 0.0625 | 29369-29371 | |
N | 366 | T366V | nonsyn | ACa | GTa | 10 | 6 | 0.6 | 29369-29371 | |
N | 366 | T366V | nonsyn | ACA | GTG | 10 | 2 | 0.2 | 29369-29371 | |
N | 366 | T366V | nonsyn | ACA | GTT | 10 | 2 | 0.2 | 29369-29371 | |
N | 366 | T366Y | nonsyn | ACA | TAT | 9 | 5 | 0.555556 | 29369-29371 | |
N | 366 | T366Y | nonsyn | ACA | TAC | 9 | 4 | 0.444444 | 29369-29371 | |
N | 366 | T366del1 | del | acA | ac- | 8 | 6 | 0.75 | 29369-29371 | |
N | 366 | T366D | nonsyn | ACA | GAC | 8 | 4 | 0.5 | 29369-29371 | |
N | 366 | T366H | nonsyn | ACA | CAT | 8 | 4 | 0.5 | 29369-29371 | |
N | 366 | T366D | nonsyn | ACA | GAT | 8 | 4 | 0.5 | 29369-29371 | |
N | 366 | T366H | nonsyn | ACA | CAC | 8 | 4 | 0.5 | 29369-29371 | |
N | 366 | T366del1 | del | Aca | -ca | 8 | 1 | 0.125 | 29369-29371 | |
N | 366 | T366del1 | del | aCa | a-a | 8 | 1 | 0.125 | 29369-29371 | |
N | 366 | T366G | nonsyn | ACa | GGa | 5 | 3 | 0.6 | 29369-29371 | |
N | 366 | T366G | nonsyn | ACA | GGC | 5 | 1 | 0.2 | 29369-29371 | |
N | 366 | T366G | nonsyn | ACA | GGG | 5 | 1 | 0.2 | 29369-29371 | |
N | 366 | T366M | nonsyn | aCA | aTG | 4 | 4 | 1 | 29369-29371 | |
N | 366 | T366F | nonsyn | ACA | TTC | 3 | 2 | 0.666667 | 29369-29371 | |
N | 366 | T366C | nonsyn | ACA | TGC | 3 | 2 | 0.666667 | 29369-29371 | |
N | 366 | T366F | nonsyn | ACA | TTT | 3 | 1 | 0.333333 | 29369-29371 | |
N | 366 | T366C | nonsyn | ACA | TGT | 3 | 1 | 0.333333 | 29369-29371 | |
N | 366 | T366W | nonsyn | ACA | TGG | 1 | 1 | 1 | 29369-29371 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 366 | T366I | aCa | aTa | 13078 | 13088 | All | 0.002501 |
N | 366 | T366I | aCA | aTT | 8 | 13088 | All | 0.000002 |
N | 366 | T366I | aCA | aTC | 2 | 13088 | All | 0 |
N | 366 | T366I | aCa | aTa | 2703 | 2703 | C.37 | 0.313719 |
N | 366 | T366I | aCa | aTa | 1780 | 1786 | B.1.1.7 | 0.001593 |
N | 366 | T366I | aCA | aTT | 4 | 1786 | B.1.1.7 | 0.000004 |
N | 366 | T366I | aCA | aTC | 2 | 1786 | B.1.1.7 | 0.000002 |
N | 366 | T366T | acA | acG | 958 | 1212 | All | 0.000183 |
N | 366 | T366T | acA | acT | 181 | 1212 | All | 0.000035 |
N | 366 | T366T | acA | acC | 73 | 1212 | All | 0.000014 |
N | 366 | T366I | aCa | aTa | 1016 | 1016 | AY.4 | 0.001581 |
N | 366 | T366I | aCa | aTa | 996 | 996 | B.1.1.348 | 0.792994 |
N | 366 | T366I | aCa | aTa | 789 | 789 | AY.4.2 | 0.017112 |
N | 366 | T366T | acA | acG | 749 | 749 | AY.118 | 0.046924 |
N | 366 | T366A | Aca | Gca | 524 | 531 | All | 0.0001 |
N | 366 | T366A | AcA | GcC | 4 | 531 | All | 0.000001 |
N | 366 | T366A | AcA | GcT | 2 | 531 | All | 0 |
N | 366 | T366A | AcA | GcG | 1 | 531 | All | 0 |
N | 366 | T366I | aCa | aTa | 484 | 484 | Q.1 | 0.061142 |
N | 366 | T366I | aCa | aTa | 450 | 450 | AY.103 | 0.002794 |
N | 366 | T366I | aCa | aTa | 388 | 388 | AY.3 | 0.003859 |
N | 366 | T366A | Aca | Gca | 329 | 336 | B.1.1.7 | 0.000295 |
N | 366 | T366A | AcA | GcC | 4 | 336 | B.1.1.7 | 0.000004 |
N | 366 | T366A | AcA | GcT | 2 | 336 | B.1.1.7 | 0.000002 |
N | 366 | T366A | AcA | GcG | 1 | 336 | B.1.1.7 | 0.000001 |
N | 366 | T366I | aCa | aTa | 332 | 332 | AY.43 | 0.001471 |
N | 366 | T366I | aCa | aTa | 296 | 296 | B.1.596 | 0.025793 |
N | 366 | T366I | aCa | aTa | 266 | 266 | B.1.1 | 0.004825 |
N | 366 | T366I | aCa | aTa | 228 | 228 | AY.74 | 0.026368 |
N | 366 | T366I | aCa | aTa | 221 | 221 | B.1 | 0.002024 |
N | 366 | T366I | aCa | aTa | 219 | 219 | AY.44 | 0.001333 |
N | 366 | T366T | acA | acT | 126 | 218 | B.1.1.7 | 0.000113 |
N | 366 | T366T | acA | acG | 80 | 218 | B.1.1.7 | 0.000072 |
N | 366 | T366T | acA | acC | 12 | 218 | B.1.1.7 | 0.000011 |
N | 366 | T366I | aCa | aTa | 214 | 214 | B.1.2 | 0.001884 |
N | 366 | T366I | aCa | aTa | 199 | 199 | C.37.1 | 0.520942 |
N | 366 | T366S | Aca | Tca | 142 | 152 | All | 0.000027 |
N | 366 | T366S | AcA | TcT | 3 | 152 | All | 0.000001 |
N | 366 | T366S | AcA | TcC | 3 | 152 | All | 0.000001 |
N | 366 | T366S | aCA | aGC | 2 | 152 | All | 0 |
N | 366 | T366S | AcA | TcG | 1 | 152 | All | 0 |
N | 366 | T366S | aCA | aGT | 1 | 152 | All | 0 |
N | 366 | T366I | aCa | aTa | 147 | 147 | B.1.617.2 | 0.000554 |
N | 366 | T366R | aCa | aGa | 105 | 116 | All | 0.00002 |
N | 366 | T366R | ACa | CGa | 5 | 116 | All | 0.000001 |
N | 366 | T366R | aCA | aGG | 3 | 116 | All | 0.000001 |
N | 366 | T366R | ACA | CGG | 2 | 116 | All | 0 |
N | 366 | T366R | ACA | CGC | 1 | 116 | All | 0 |
N | 366 | T366P | Aca | Cca | 102 | 106 | All | 0.00002 |
N | 366 | T366P | AcA | CcT | 2 | 106 | All | 0 |
N | 366 | T366P | AcA | CcC | 2 | 106 | All | 0 |
N | 366 | T366S | Aca | Tca | 103 | 103 | AY.103 | 0.00064 |
N | 366 | T366I | aCa | aTa | 99 | 100 | AY.25 | 0.000595 |
N | 366 | T366I | aCA | aTT | 1 | 100 | AY.25 | 0.000006 |
N | 366 | T366I | aCa | aTa | 96 | 96 | B.1.177 | 0.001264 |
N | 366 | T366K | aCa | aAa | 74 | 82 | All | 0.000014 |
N | 366 | T366K | aCA | aAG | 8 | 82 | All | 0.000002 |
N | 366 | T366I | aCa | aTa | 81 | 81 | P.1 | 0.001276 |
N | 366 | T366I | aCa | aTa | 74 | 74 | B.1.1.176 | 0.032513 |
N | 366 | T366I | aCa | aTa | 72 | 72 | B.1.428 | 0.073469 |
N | 366 | T366del | ACA | --- | 68 | 68 | All | 0.000013 |
N | 366 | T366I | aCa | aTa | 68 | 68 | B.1.526 | 0.001598 |
N | 366 | T366I | aCa | aTa | 62 | 62 | R.1 | 0.005581 |
N | 366 | T366I | aCa | aTa | 61 | 61 | B.1.428.3 | 0.782051 |
N | 366 | T366I | aCa | aTa | 58 | 58 | B.1.177.82 | 0.027685 |
N | 366 | T366I | aCa | aTa | 56 | 56 | B.1.351 | 0.001665 |
N | 366 | T366I | aCa | aTa | 54 | 54 | AY.120 | 0.002008 |
N | 366 | T366I | aCa | aTa | 51 | 51 | B.1.177.81 | 0.009655 |
N | 366 | T366R | aCa | aGa | 51 | 51 | B.1.181 | 1 |
N | 366 | T366P | Aca | Cca | 51 | 51 | B.1.240 | 0.010994 |
N | 366 | T366I | aCa | aTa | 46 | 46 | AY.30 | 0.018203 |
N | 366 | T366I | aCa | aTa | 45 | 45 | AY.27 | 0.002912 |
N | 366 | T366K | aCa | aAa | 37 | 44 | B.1.1.7 | 0.000033 |
N | 366 | T366K | aCA | aAG | 7 | 44 | B.1.1.7 | 0.000006 |
N | 366 | T366I | aCa | aTa | 43 | 43 | AY.13 | 0.006922 |
N | 366 | T366T | acA | acC | 43 | 43 | R.1 | 0.00387 |
N | 366 | T366A | Aca | Gca | 42 | 42 | B.1.2 | 0.00037 |
N | 366 | T366I | aCa | aTa | 39 | 39 | AY.5 | 0.000805 |
N | 366 | T366I | aCa | aTa | 39 | 39 | AY.7.1 | 0.004395 |
N | 366 | T366I | aCa | aTa | 37 | 37 | AY.26 | 0.001047 |
N | 366 | T366I | aCa | aTa | 37 | 37 | AY.29 | 0.000584 |
N | 366 | T366I | aCa | aTa | 35 | 35 | AY.20 | 0.00136 |
N | 366 | T366I | aCa | aTa | 32 | 32 | AY.39.1 | 0.001268 |
N | 366 | T366I | aCa | aTa | 31 | 31 | C.36 | 0.028233 |
N | 366 | T366I | aCa | aTa | 30 | 30 | B.1.177.46 | 0.027548 |
N | 366 | T366I | aCa | aTa | 29 | 30 | B.1.429 | 0.000682 |
N | 366 | T366I | aCA | aTT | 1 | 30 | B.1.429 | 0.000024 |
N | 366 | T366I | aCa | aTa | 29 | 29 | AY.24 | 0.0125 |
N | 366 | T366X | ACa | TAa | 18 | 28 | All | 0.000003 |
N | 366 | T366X | ACa | TGa | 5 | 28 | All | 0.000001 |
N | 366 | T366X | ACA | TAG | 5 | 28 | All | 0.000001 |
N | 366 | T366I | aCa | aTa | 28 | 28 | B.1.160 | 0.000873 |
N | 366 | T366I | aCa | aTa | 27 | 27 | B.1.601 | 0.818182 |
N | 366 | T366I | aCa | aTa | 26 | 26 | AY.33 | 0.001736 |
N | 366 | T366A | Aca | Gca | 26 | 26 | B.1.427 | 0.001313 |
N | 366 | T366R | aCa | aGa | 25 | 25 | B.1.346 | 0.032765 |
N | 366 | T366I | aCa | aTa | 24 | 24 | AY.75 | 0.001345 |
N | 366 | T366I | aCa | aTa | 24 | 24 | B.1.1.519 | 0.000953 |
N | 366 | T366I | aCa | aTa | 24 | 24 | B.1.427 | 0.001212 |
N | 366 | T366I | aCa | aTa | 24 | 24 | B.1.577 | 0.016495 |
N | 366 | T366X | ACa | TAa | 14 | 23 | B.1.1.7 | 0.000013 |
N | 366 | T366X | ACa | TGa | 5 | 23 | B.1.1.7 | 0.000004 |
N | 366 | T366X | ACA | TAG | 4 | 23 | B.1.1.7 | 0.000004 |
N | 366 | T366R | aCa | aGa | 11 | 22 | B.1.1.7 | 0.00001 |
N | 366 | T366R | ACa | CGa | 5 | 22 | B.1.1.7 | 0.000004 |
N | 366 | T366R | aCA | aGG | 3 | 22 | B.1.1.7 | 0.000003 |
N | 366 | T366R | ACA | CGG | 2 | 22 | B.1.1.7 | 0.000002 |
N | 366 | T366R | ACA | CGC | 1 | 22 | B.1.1.7 | 0.000001 |
N | 366 | T366T | acA | acT | 10 | 21 | AY.25 | 0.00006 |
N | 366 | T366T | acA | acG | 10 | 21 | AY.25 | 0.00006 |
N | 366 | T366T | acA | acC | 1 | 21 | AY.25 | 0.000006 |
N | 366 | T366I | aCa | aTa | 21 | 21 | B.1.1.222 | 0.004284 |
N | 366 | T366N | aCA | aAT | 13 | 20 | All | 0.000002 |
N | 366 | T366N | aCA | aAC | 7 | 20 | All | 0.000001 |
N | 366 | T366I | aCa | aTa | 20 | 20 | AY.61 | 0.002096 |
N | 366 | T366I | aCa | aTa | 20 | 20 | B.1.595 | 0.005219 |
N | 366 | T366S | Aca | Tca | 10 | 19 | B.1.1.7 | 0.000009 |
N | 366 | T366S | AcA | TcC | 3 | 19 | B.1.1.7 | 0.000003 |
N | 366 | T366S | aCA | aGC | 2 | 19 | B.1.1.7 | 0.000002 |
N | 366 | T366S | AcA | TcT | 2 | 19 | B.1.1.7 | 0.000002 |
N | 366 | T366S | AcA | TcG | 1 | 19 | B.1.1.7 | 0.000001 |
N | 366 | T366S | aCA | aGT | 1 | 19 | B.1.1.7 | 0.000001 |
N | 366 | T366N | aCA | aAT | 11 | 18 | B.1.1.7 | 0.00001 |
N | 366 | T366N | aCA | aAC | 7 | 18 | B.1.1.7 | 0.000006 |
N | 366 | T366E | ACa | GAa | 14 | 17 | All | 0.000003 |
N | 366 | T366E | ACA | GAG | 3 | 17 | All | 0.000001 |
N | 366 | T366T | acA | acG | 15 | 17 | AY.44 | 0.000091 |
N | 366 | T366T | acA | acC | 2 | 17 | AY.44 | 0.000012 |
N | 366 | T366I | aCa | aTa | 17 | 17 | AY.54 | 0.001621 |
N | 366 | T366I | aCa | aTa | 17 | 17 | B.1.637 | 0.001242 |
N | 366 | T366I | aCa | aTa | 17 | 17 | P.1.14 | 0.000813 |
N | 366 | T366Q | ACa | CAa | 14 | 16 | All | 0.000003 |
N | 366 | T366L | ACa | TTa | 6 | 16 | All | 0.000001 |
N | 366 | T366L | ACa | CTa | 4 | 16 | All | 0.000001 |
N | 366 | T366L | ACA | TTG | 3 | 16 | All | 0.000001 |
N | 366 | T366Q | ACA | CAG | 2 | 16 | All | 0 |
N | 366 | T366L | ACA | CTT | 2 | 16 | All | 0 |
N | 366 | T366L | ACA | CTG | 1 | 16 | All | 0 |
N | 366 | T366P | Aca | Cca | 16 | 16 | AY.41 | 0.004703 |
N | 366 | T366T | acA | acG | 16 | 16 | B.1.160 | 0.000499 |
N | 366 | T366A | Aca | Gca | 16 | 16 | B.1.596 | 0.001394 |
N | 366 | T366I | aCa | aTa | 15 | 15 | AY.119 | 0.00053 |
N | 366 | T366I | aCa | aTa | 15 | 15 | AY.39 | 0.000371 |
N | 366 | T366A | Aca | Gca | 15 | 15 | AY.4 | 0.000023 |
N | 366 | T366T | acA | acT | 7 | 15 | AY.4 | 0.000011 |
N | 366 | T366T | acA | acG | 7 | 15 | AY.4 | 0.000011 |
N | 366 | T366T | acA | acC | 1 | 15 | AY.4 | 0.000002 |
N | 366 | T366Q | ACa | CAa | 13 | 15 | B.1.1.7 | 0.000012 |
N | 366 | T366E | ACa | GAa | 12 | 15 | B.1.1.7 | 0.000011 |
N | 366 | T366E | ACA | GAG | 3 | 15 | B.1.1.7 | 0.000003 |
N | 366 | T366Q | ACA | CAG | 2 | 15 | B.1.1.7 | 0.000002 |
N | 366 | T366A | Aca | Gca | 15 | 15 | D.3 | 0.088757 |
N | 366 | T366I | aCa | aTa | 14 | 14 | AY.116 | 0.004015 |
N | 366 | T366L | ACa | TTa | 5 | 14 | B.1.1.7 | 0.000004 |
N | 366 | T366L | ACa | CTa | 4 | 14 | B.1.1.7 | 0.000004 |
N | 366 | T366L | ACA | TTG | 2 | 14 | B.1.1.7 | 0.000002 |
N | 366 | T366L | ACA | CTT | 2 | 14 | B.1.1.7 | 0.000002 |
N | 366 | T366L | ACA | CTG | 1 | 14 | B.1.1.7 | 0.000001 |
N | 366 | T366A | Aca | Gca | 14 | 14 | B.1.617.2 | 0.000053 |
N | 366 | T366I | aCa | aTa | 14 | 14 | P.1.7 | 0.00447 |
N | 366 | T366I | aCa | aTa | 13 | 13 | B.1.177.44 | 0.006746 |
N | 366 | T366I | aCa | aTa | 12 | 12 | AY.102 | 0.000318 |
N | 366 | T366I | aCa | aTa | 12 | 12 | AY.117 | 0.001014 |
N | 366 | T366I | aCa | aTa | 12 | 12 | AY.42 | 0.000483 |
N | 366 | T366I | aCa | aTa | 11 | 11 | AY.36 | 0.00163 |
N | 366 | T366S | Aca | Tca | 11 | 11 | AY.4 | 0.000017 |
N | 366 | T366P | Aca | Cca | 7 | 11 | B.1.1.7 | 0.000006 |
N | 366 | T366P | AcA | CcC | 2 | 11 | B.1.1.7 | 0.000002 |
N | 366 | T366P | AcA | CcT | 2 | 11 | B.1.1.7 | 0.000002 |
N | 366 | T366I | aCa | aTa | 11 | 11 | B.1.617.1 | 0.001419 |
N | 366 | T366T | acA | acG | 7 | 11 | B.1.617.2 | 0.000026 |
N | 366 | T366T | acA | acT | 4 | 11 | B.1.617.2 | 0.000015 |
N | 366 | T366del | ACA | --- | 11 | 11 | B.1.621 | 0.000974 |
N | 366 | T366V | ACa | GTa | 6 | 10 | All | 0.000001 |
N | 366 | T366V | ACA | GTG | 2 | 10 | All | 0 |
N | 366 | T366V | ACA | GTT | 2 | 10 | All | 0 |
N | 366 | T366S | Aca | Tca | 10 | 10 | AY.118 | 0.000626 |
N | 366 | T366I | aCa | aTa | 10 | 10 | AY.3.1 | 0.000853 |
N | 366 | T366del | ACA | --- | 10 | 10 | B.1.1.7 | 0.000009 |
N | 366 | T366A | Aca | Gca | 10 | 10 | B.1.160 | 0.000312 |
N | 366 | T366I | aCa | aTa | 10 | 10 | B.1.22 | 0.013175 |
N | 366 | T366I | aCa | aTa | 10 | 10 | B.1.621 | 0.000885 |
N | 366 | T366Y | ACA | TAT | 5 | 9 | All | 0.000001 |
N | 366 | T366Y | ACA | TAC | 4 | 9 | All | 0.000001 |
N | 366 | T366I | aCa | aTa | 9 | 9 | AY.23 | 0.000628 |
N | 366 | T366T | acA | acT | 9 | 9 | AY.99.2 | 0.000829 |
N | 366 | T366I | aCa | aTa | 9 | 9 | B.1.1.291 | 0.006682 |
N | 366 | T366I | aCa | aTa | 9 | 9 | B.1.1.307 | 0.022785 |
N | 366 | T366T | acA | acG | 6 | 9 | B.1.2 | 0.000053 |
N | 366 | T366T | acA | acT | 2 | 9 | B.1.2 | 0.000018 |
N | 366 | T366T | acA | acC | 1 | 9 | B.1.2 | 0.000009 |
N | 366 | T366I | aCa | aTa | 9 | 9 | B.1.241 | 0.007305 |
N | 366 | T366I | aCa | aTa | 9 | 9 | B.1.243 | 0.000626 |
N | 366 | T366del1 | acA | ac- | 6 | 8 | All | 0.000001 |
N | 366 | T366D | ACA | GAC | 4 | 8 | All | 0.000001 |
N | 366 | T366D | ACA | GAT | 4 | 8 | All | 0.000001 |
N | 366 | T366H | ACA | CAC | 4 | 8 | All | 0.000001 |
N | 366 | T366H | ACA | CAT | 4 | 8 | All | 0.000001 |
N | 366 | T366del1 | aCa | a-a | 1 | 8 | All | 0 |
N | 366 | T366del1 | Aca | -ca | 1 | 8 | All | 0 |
N | 366 | T366R | aCa | aGa | 8 | 8 | B.1 | 0.000073 |
N | 366 | T366K | aCa | aAa | 8 | 8 | B.1 | 0.000073 |
N | 366 | T366I | aCa | aTa | 8 | 8 | B.1.1.63 | 0.003086 |
N | 366 | T366Y | ACA | TAT | 4 | 8 | B.1.1.7 | 0.000004 |
N | 366 | T366Y | ACA | TAC | 4 | 8 | B.1.1.7 | 0.000004 |
N | 366 | T366H | ACA | CAT | 4 | 8 | B.1.1.7 | 0.000004 |
N | 366 | T366H | ACA | CAC | 4 | 8 | B.1.1.7 | 0.000004 |
N | 366 | T366I | aCa | aTa | 8 | 8 | B.1.146 | 0.033898 |
N | 366 | T366I | aCa | aTa | 8 | 8 | B.1.177.21 | 0.000612 |
N | 366 | T366I | aCa | aTa | 8 | 8 | B.1.467 | 0.32 |
N | 366 | T366I | aCa | aTa | 8 | 8 | B.1.497 | 0.002518 |
N | 366 | T366I | aCa | aTa | 7 | 7 | AE.6 | 0.269231 |
N | 366 | T366I | aCa | aTa | 7 | 7 | AY.106 | 0.002344 |
N | 366 | T366I | aCa | aTa | 7 | 7 | AY.116.1 | 0.00218 |
N | 366 | T366I | aCa | aTa | 7 | 7 | AY.98 | 0.000553 |
N | 366 | T366del | ACA | --- | 7 | 7 | B.1.1 | 0.000127 |
N | 366 | T366V | ACa | GTa | 4 | 7 | B.1.1.7 | 0.000004 |
N | 366 | T366D | ACA | GAC | 4 | 7 | B.1.1.7 | 0.000004 |
N | 366 | T366D | ACA | GAT | 3 | 7 | B.1.1.7 | 0.000003 |
N | 366 | T366V | ACA | GTG | 2 | 7 | B.1.1.7 | 0.000002 |
N | 366 | T366V | ACA | GTT | 1 | 7 | B.1.1.7 | 0.000001 |
N | 366 | T366A | Aca | Gca | 7 | 7 | B.1.526 | 0.000165 |
N | 366 | T366I | aCa | aTa | 7 | 7 | C.36.3 | 0.003971 |
N | 366 | T366I | aCa | aTa | 7 | 7 | P.2 | 0.001306 |
N | 366 | T366I | aCa | aTa | 6 | 6 | AY.118 | 0.000376 |
N | 366 | T366I | aCa | aTa | 6 | 6 | AY.37 | 0.001896 |
N | 366 | T366I | aCa | aTa | 6 | 6 | AY.9.2 | 0.00022 |
N | 366 | T366I | aCa | aTa | 6 | 6 | AY.92 | 0.001724 |
N | 366 | T366I | aCa | aTa | 6 | 6 | B.1.1.209 | 0.053571 |
N | 366 | T366T | acA | acG | 6 | 6 | B.1.1.315 | 0.050847 |
N | 366 | T366del | ACA | --- | 6 | 6 | B.1.177 | 0.000079 |
N | 366 | T366I | aCa | aTa | 6 | 6 | B.1.177.58 | 0.007989 |
N | 366 | T366I | aCa | aTa | 6 | 6 | B.1.177.60 | 0.001311 |
N | 366 | T366K | aCa | aAa | 6 | 6 | B.1.2 | 0.000053 |
N | 366 | T366I | aCa | aTa | 6 | 6 | B.1.258.17 | 0.000624 |
N | 366 | T366I | aCa | aTa | 6 | 6 | B.1.265 | 0.007624 |
N | 366 | T366I | aCa | aTa | 6 | 6 | B.1.362.2 | 0.028302 |
N | 366 | T366I | aCa | aTa | 6 | 6 | B.1.565 | 0.004862 |
N | 366 | T366I | aCa | aTa | 6 | 6 | B.1.609 | 0.002876 |
N | 366 | T366G | ACa | GGa | 3 | 5 | All | 0.000001 |
N | 366 | T366G | ACA | GGG | 1 | 5 | All | 0 |
N | 366 | T366G | ACA | GGC | 1 | 5 | All | 0 |
N | 366 | T366I | aCa | aTa | 5 | 5 | AY.34 | 0.000485 |
N | 366 | T366I | aCa | aTa | 5 | 5 | AY.47 | 0.000156 |
N | 366 | T366I | aCa | aTa | 5 | 5 | AY.48 | 0.002326 |
N | 366 | T366I | aCa | aTa | 5 | 5 | AY.6 | 0.000206 |
N | 366 | T366del | ACA | --- | 5 | 5 | AY.92 | 0.001436 |
N | 366 | T366I | aCa | aTa | 5 | 5 | AY.99.2 | 0.000461 |
N | 366 | T366I | aCa | aTa | 5 | 5 | B | 0.000639 |
N | 366 | T366I | aCa | aTa | 5 | 5 | B.1.1.283 | 0.116279 |
N | 366 | T366G | ACa | GGa | 3 | 5 | B.1.1.7 | 0.000003 |
N | 366 | T366G | ACA | GGG | 1 | 5 | B.1.1.7 | 0.000001 |
N | 366 | T366G | ACA | GGC | 1 | 5 | B.1.1.7 | 0.000001 |
N | 366 | T366I | aCa | aTa | 5 | 5 | B.1.126 | 0.006378 |
N | 366 | T366A | Aca | Gca | 5 | 5 | B.1.177 | 0.000066 |
N | 366 | T366T | acA | acC | 4 | 5 | B.1.177 | 0.000053 |
N | 366 | T366T | acA | acG | 1 | 5 | B.1.177 | 0.000013 |
N | 366 | T366I | aCa | aTa | 5 | 5 | B.1.177.32 | 0.006748 |
N | 366 | T366I | aCa | aTa | 5 | 5 | B.1.177.7 | 0.000824 |
N | 366 | T366I | aCa | aTa | 5 | 5 | B.1.177.84 | 0.033333 |
N | 366 | T366T | acA | acG | 5 | 5 | B.1.221 | 0.000355 |
N | 366 | T366T | acA | acT | 5 | 5 | B.1.243 | 0.000348 |
N | 366 | T366I | aCa | aTa | 5 | 5 | B.1.258 | 0.000333 |
N | 366 | T366I | aCa | aTa | 5 | 5 | B.1.36.1 | 0.005701 |
N | 366 | T366I | aCa | aTa | 5 | 5 | B.1.499 | 0.005252 |
N | 366 | T366I | aCa | aTa | 5 | 5 | B.1.620 | 0.00473 |
N | 366 | T366I | aCa | aTa | 5 | 5 | P.1.15 | 0.001162 |
N | 366 | T366T | acA | acG | 5 | 5 | P.1.9 | 0.024038 |
N | 366 | T366I | aCA | aTT | 2 | 4 | 0.111111 | |
N | 366 | T366I | aCa | aTa | 2 | 4 | 0.111111 | |
N | 366 | T366M | aCA | aTG | 4 | 4 | All | 0.000001 |
N | 366 | T366T | acA | acT | 4 | 4 | AY.100 | 0.000184 |
N | 366 | T366I | aCa | aTa | 4 | 4 | AY.100 | 0.000184 |
N | 366 | T366I | aCa | aTa | 4 | 4 | AY.107 | 0.001864 |
N | 366 | T366T | acA | acG | 2 | 4 | AY.3 | 0.00002 |
N | 366 | T366T | acA | acT | 2 | 4 | AY.3 | 0.00002 |
N | 366 | T366A | Aca | Gca | 4 | 4 | AY.45 | 0.000487 |
N | 366 | T366I | aCa | aTa | 4 | 4 | AY.69 | 0.000747 |
N | 366 | T366I | aCa | aTa | 4 | 4 | AY.85 | 0.001709 |
N | 366 | T366I | aCa | aTa | 4 | 4 | AY.9.1 | 0.000335 |
N | 366 | T366del | ACA | --- | 4 | 4 | B.1 | 0.000037 |
N | 366 | T366K | aCa | aAa | 4 | 4 | B.1.1 | 0.000073 |
N | 366 | T366I | aCa | aTa | 4 | 4 | B.1.1.220 | 0.007435 |
N | 366 | T366I | aCa | aTa | 4 | 4 | B.1.1.28 | 0.001245 |
N | 366 | T366R | aCa | aGa | 4 | 4 | B.1.1.519 | 0.000159 |
N | 366 | T366I | aCa | aTa | 4 | 4 | B.1.110.3 | 0.002874 |
N | 366 | T366I | aCa | aTa | 4 | 4 | B.1.177.86 | 0.000734 |
N | 366 | T366del | ACA | --- | 4 | 4 | B.1.324 | 0.006421 |
N | 366 | T366I | aCa | aTa | 4 | 4 | B.1.36 | 0.000584 |
N | 366 | T366I | aCa | aTa | 4 | 4 | B.1.627 | 0.008081 |
N | 366 | T366I | aCa | aTa | 4 | 4 | B.1.634 | 0.013699 |
N | 366 | T366I | aCa | aTa | 4 | 4 | D.2 | 0.0003 |
N | 366 | T366P | Aca | Cca | 4 | 4 | P.1 | 0.000063 |
N | 366 | T366I | aCa | aTa | 3 | 3 | A.2.5.3 | 0.030928 |
N | 366 | T366I | aCa | aTa | 3 | 3 | A.23.1 | 0.002113 |
N | 366 | T366C | ACA | TGC | 2 | 3 | All | 0 |
N | 366 | T366F | ACA | TTC | 2 | 3 | All | 0 |
N | 366 | T366F | ACA | TTT | 1 | 3 | All | 0 |
N | 366 | T366C | ACA | TGT | 1 | 3 | All | 0 |
N | 366 | T366A | Aca | Gca | 3 | 3 | AY.103 | 0.000019 |
N | 366 | T366T | acA | acG | 3 | 3 | AY.109 | 0.002219 |
N | 366 | T366I | aCa | aTa | 3 | 3 | AY.120.2.1 | 0.001495 |
N | 366 | T366I | aCa | aTa | 3 | 3 | AY.4.2.1 | 0.000447 |
N | 366 | T366I | aCa | aTa | 3 | 3 | AY.46 | 0.000312 |
N | 366 | T366I | aCa | aTa | 3 | 3 | AY.46.6 | 0.000217 |
N | 366 | T366T | acA | acG | 3 | 3 | AY.5 | 0.000062 |
N | 366 | T366A | Aca | Gca | 3 | 3 | AY.64 | 0.001786 |
N | 366 | T366I | aCa | aTa | 3 | 3 | AY.67 | 0.001393 |
N | 366 | T366I | aCa | aTa | 3 | 3 | AY.7 | 0.000588 |
N | 366 | T366I | aCa | aTa | 3 | 3 | AY.75.1 | 0.000541 |
N | 366 | T366P | Aca | Cca | 3 | 3 | AY.9.1 | 0.000251 |
N | 366 | T366I | aCa | aTa | 3 | 3 | AY.98.1 | 0.000145 |
N | 366 | T366I | aCa | aTa | 3 | 3 | AY.99 | 0.003148 |
N | 366 | T366T | acA | acT | 2 | 3 | B.1.1 | 0.000036 |
N | 366 | T366T | acA | acG | 1 | 3 | B.1.1 | 0.000018 |
N | 366 | T366I | aCa | aTa | 3 | 3 | B.1.1.1 | 0.00098 |
N | 366 | T366I | aCa | aTa | 3 | 3 | B.1.1.153 | 0.003286 |
N | 366 | T366T | acA | acG | 3 | 3 | B.1.1.214 | 0.000166 |
N | 366 | T366I | aCa | aTa | 3 | 3 | B.1.1.214 | 0.000166 |
N | 366 | T366I | aCa | aTa | 3 | 3 | B.1.1.269 | 0.00406 |
N | 366 | T366T | acA | acG | 3 | 3 | B.1.1.312 | 0.005736 |
N | 366 | T366I | aCa | aTa | 3 | 3 | B.1.1.416 | 0.002715 |
N | 366 | T366I | aCa | aTa | 3 | 3 | B.1.1.417 | 0.008108 |
N | 366 | T366M | aCA | aTG | 3 | 3 | B.1.1.7 | 0.000003 |
N | 366 | T366F | ACA | TTC | 2 | 3 | B.1.1.7 | 0.000002 |
N | 366 | T366C | ACA | TGC | 2 | 3 | B.1.1.7 | 0.000002 |
N | 366 | T366C | ACA | TGT | 1 | 3 | B.1.1.7 | 0.000001 |
N | 366 | T366F | ACA | TTT | 1 | 3 | B.1.1.7 | 0.000001 |
N | 366 | T366I | aCa | aTa | 3 | 3 | B.1.177.12 | 0.000455 |
N | 366 | T366I | aCa | aTa | 3 | 3 | B.1.214.3 | 0.021429 |
N | 366 | T366I | aCa | aTa | 3 | 3 | B.1.232 | 0.001612 |
N | 366 | T366I | aCa | aTa | 3 | 3 | B.1.311 | 0.000824 |
N | 366 | T366I | aCa | aTa | 3 | 3 | B.1.350 | 0.008798 |
N | 366 | T366I | aCa | aTa | 3 | 3 | B.1.36.27 | 0.00229 |
N | 366 | T366I | aCa | aTa | 3 | 3 | B.1.576 | 0.00272 |
N | 366 | T366I | aCa | aTa | 3 | 3 | B.1.580 | 0.012195 |
N | 366 | T366I | aCa | aTa | 3 | 3 | B.1.628 | 0.001057 |
N | 366 | T366K | aCa | aAa | 3 | 3 | B.1.637 | 0.000219 |
N | 366 | T366I | aCa | aTa | 3 | 3 | B.3 | 0.002492 |
N | 366 | T366I | aCa | aTa | 3 | 3 | C.35 | 0.002322 |
N | 366 | T366K | aCa | aAa | 2 | 3 | P.1 | 0.000032 |
N | 366 | T366K | aCA | aAG | 1 | 3 | P.1 | 0.000016 |
N | 366 | T366I | aCa | aTa | 3 | 3 | P.1.2 | 0.003468 |
N | 366 | T366I | aCa | aTa | 3 | 3 | Q.7 | 0.003333 |
N | 366 | T366del | ACA | --- | 2 | 2 | 0.111111 | |
N | 366 | T366T | acA | acT | 2 | 2 | 0.111111 | |
N | 366 | T366I | aCa | aTa | 2 | 2 | A | 0.000774 |
N | 366 | T366I | aCa | aTa | 2 | 2 | A.2.5 | 0.000998 |
N | 366 | T366I | aCa | aTa | 2 | 2 | AE.8 | 0.000978 |
N | 366 | T366I | aCa | aTa | 2 | 2 | AY.110 | 0.000225 |
N | 366 | T366A | Aca | Gca | 2 | 2 | AY.118 | 0.000125 |
N | 366 | T366T | acA | acC | 2 | 2 | AY.119 | 0.000071 |
N | 366 | T366I | aCa | aTa | 2 | 2 | AY.16 | 0.000759 |
N | 366 | T366I | aCa | aTa | 2 | 2 | AY.16.1 | 0.00094 |
N | 366 | T366K | aCa | aAa | 2 | 2 | AY.25 | 0.000012 |
N | 366 | T366A | Aca | Gca | 2 | 2 | AY.25 | 0.000012 |
N | 366 | T366V | ACa | GTa | 1 | 2 | AY.25 | 0.000006 |
N | 366 | T366V | ACA | GTT | 1 | 2 | AY.25 | 0.000006 |
N | 366 | T366I | aCa | aTa | 2 | 2 | AY.29.1 | 0.000441 |
N | 366 | T366T | acA | acG | 1 | 2 | AY.3.1 | 0.000085 |
N | 366 | T366T | acA | acC | 1 | 2 | AY.3.1 | 0.000085 |
N | 366 | T366I | aCa | aTa | 2 | 2 | AY.32 | 0.001065 |
N | 366 | T366S | Aca | Tca | 2 | 2 | AY.33 | 0.000134 |
N | 366 | T366I | aCa | aTa | 2 | 2 | AY.38 | 0.000999 |
N | 366 | T366T | acA | acC | 2 | 2 | AY.39 | 0.000049 |
N | 366 | T366P | Aca | Cca | 2 | 2 | AY.4 | 0.000003 |
N | 366 | T366T | acA | acG | 2 | 2 | AY.42 | 0.00008 |
N | 366 | T366P | Aca | Cca | 2 | 2 | AY.43 | 0.000009 |
N | 366 | T366A | Aca | Gca | 2 | 2 | AY.43 | 0.000009 |
N | 366 | T366T | acA | acT | 1 | 2 | AY.43 | 0.000004 |
N | 366 | T366T | acA | acG | 1 | 2 | AY.43 | 0.000004 |
N | 366 | T366I | aCa | aTa | 2 | 2 | AY.45 | 0.000243 |
N | 366 | T366I | aCa | aTa | 2 | 2 | AY.59 | 0.001059 |
N | 366 | T366I | aCa | aTa | 2 | 2 | AY.88 | 0.001768 |
N | 366 | T366A | Aca | Gca | 2 | 2 | B.1 | 0.000018 |
N | 366 | T366T | acA | acG | 2 | 2 | B.1 | 0.000018 |
N | 366 | T366A | Aca | Gca | 2 | 2 | B.1.1 | 0.000036 |
N | 366 | T366S | AcA | TcT | 1 | 2 | B.1.1 | 0.000018 |
N | 366 | T366S | Aca | Tca | 1 | 2 | B.1.1 | 0.000018 |
N | 366 | T366I | aCa | aTa | 2 | 2 | B.1.1.161 | 0.007067 |
N | 366 | T366I | aCa | aTa | 2 | 2 | B.1.1.171 | 0.007353 |
N | 366 | T366I | aCa | aTa | 2 | 2 | B.1.1.174 | 0.006757 |
N | 366 | T366I | aCa | aTa | 2 | 2 | B.1.1.280 | 0.006173 |
N | 366 | T366I | aCa | aTa | 2 | 2 | B.1.1.317 | 0.000823 |
N | 366 | T366A | Aca | Gca | 2 | 2 | B.1.1.322 | 0.017544 |
N | 366 | T366I | aCa | aTa | 2 | 2 | B.1.1.33 | 0.000842 |
N | 366 | T366I | aCa | aTa | 2 | 2 | B.1.1.369 | 0.000892 |
N | 366 | T366I | aCa | aTa | 2 | 2 | B.1.1.37 | 0.000386 |
N | 366 | T366I | aCa | aTa | 2 | 2 | B.1.1.372 | 0.001377 |
N | 366 | T366I | aCa | aTa | 2 | 2 | B.1.1.388 | 0.090909 |
N | 366 | T366I | aCa | aTa | 2 | 2 | B.1.1.409 | 0.005666 |
N | 366 | T366I | aCa | aTa | 2 | 2 | B.1.1.462 | 0.017241 |
N | 366 | T366T | acA | acC | 1 | 2 | B.1.1.519 | 0.00004 |
N | 366 | T366T | acA | acG | 1 | 2 | B.1.1.519 | 0.00004 |
N | 366 | T366I | aCa | aTa | 2 | 2 | B.1.177.10 | 0.001756 |
N | 366 | T366I | aCa | aTa | 2 | 2 | B.1.177.53 | 0.004785 |
N | 366 | T366I | aCa | aTa | 2 | 2 | B.1.177.77 | 0.001452 |
N | 366 | T366del1 | acA | ac- | 2 | 2 | B.1.2 | 0.000018 |
N | 366 | T366I | aCa | aTa | 2 | 2 | B.1.239 | 0.002442 |
N | 366 | T366A | Aca | Gca | 2 | 2 | B.1.243 | 0.000139 |
N | 366 | T366I | aCa | aTa | 2 | 2 | B.1.245 | 0.0625 |
N | 366 | T366I | aCa | aTa | 2 | 2 | B.1.258.11 | 0.000793 |
N | 366 | T366I | aCa | aTa | 2 | 2 | B.1.36.29 | 0.001035 |
N | 366 | T366I | aCa | aTa | 2 | 2 | B.1.396 | 0.001411 |
N | 366 | T366del | ACA | --- | 2 | 2 | B.1.427 | 0.000101 |
N | 366 | T366I | aCa | aTa | 2 | 2 | B.1.459 | 0.008163 |
N | 366 | T366I | aCa | aTa | 2 | 2 | B.1.525 | 0.000226 |
N | 366 | T366T | acA | acG | 2 | 2 | B.1.526 | 0.000047 |
N | 366 | T366I | aCa | aTa | 2 | 2 | B.1.551 | 0.002581 |
N | 366 | T366I | aCa | aTa | 2 | 2 | B.1.560 | 0.009259 |
N | 366 | T366A | Aca | Gca | 2 | 2 | B.1.609 | 0.000959 |
N | 366 | T366T | acA | acG | 2 | 2 | B.1.617.1 | 0.000258 |
N | 366 | T366R | aCa | aGa | 2 | 2 | B.1.621 | 0.000177 |
N | 366 | T366I | aCa | aTa | 2 | 2 | B.40 | 0.000729 |
N | 366 | T366del | ACA | --- | 2 | 2 | P.1 | 0.000032 |
N | 366 | T366L | ACa | TTa | 1 | 2 | P.1 | 0.000016 |
N | 366 | T366X | ACA | TAG | 1 | 2 | P.1 | 0.000016 |
N | 366 | T366L | ACA | TTG | 1 | 2 | P.1 | 0.000016 |
N | 366 | T366X | ACa | TAa | 1 | 2 | P.1 | 0.000016 |
N | 366 | T366T | acA | acG | 2 | 2 | P.1.14 | 0.000096 |
N | 366 | T366I | aCa | aTa | 1 | 1 | A.1 | 0.000282 |
N | 366 | T366I | aCa | aTa | 1 | 1 | A.3 | 0.002096 |
N | 366 | T366I | aCa | aTa | 1 | 1 | A.5 | 0.001923 |
N | 366 | T366I | aCa | aTa | 1 | 1 | AD.2 | 0.000219 |
N | 366 | T366P | Aca | Cca | 1 | 1 | AL.1 | 0.012987 |
N | 366 | T366W | ACA | TGG | 1 | 1 | All | 0 |
N | 366 | T366A | Aca | Gca | 1 | 1 | AY.100 | 0.000046 |
N | 366 | T366A | Aca | Gca | 1 | 1 | AY.102 | 0.000027 |
N | 366 | T366R | aCa | aGa | 1 | 1 | AY.103 | 0.000006 |
N | 366 | T366T | acA | acG | 1 | 1 | AY.110 | 0.000113 |
N | 366 | T366I | aCa | aTa | 1 | 1 | AY.111 | 0.000183 |
N | 366 | T366I | aCa | aTa | 1 | 1 | AY.113 | 0.000142 |
N | 366 | T366del | ACA | --- | 1 | 1 | AY.114 | 0.000231 |
N | 366 | T366I | aCa | aTa | 1 | 1 | AY.114 | 0.000231 |
N | 366 | T366T | acA | acT | 1 | 1 | AY.116.1 | 0.000311 |
N | 366 | T366T | acA | acG | 1 | 1 | AY.117 | 0.000085 |
N | 366 | T366P | Aca | Cca | 1 | 1 | AY.118 | 0.000063 |
N | 366 | T366I | aCa | aTa | 1 | 1 | AY.120.1 | 0.000321 |
N | 366 | T366I | aCa | aTa | 1 | 1 | AY.120.2 | 0.001285 |
N | 366 | T366T | acA | acG | 1 | 1 | AY.13 | 0.000161 |
N | 366 | T366I | aCa | aTa | 1 | 1 | AY.14 | 0.000088 |
N | 366 | T366T | acA | acG | 1 | 1 | AY.14 | 0.000088 |
N | 366 | T366I | aCa | aTa | 1 | 1 | AY.15 | 0.002222 |
N | 366 | T366A | Aca | Gca | 1 | 1 | AY.20 | 0.000039 |
N | 366 | T366D | ACA | GAT | 1 | 1 | AY.25 | 0.000006 |
N | 366 | T366del | ACA | --- | 1 | 1 | AY.25 | 0.000006 |
N | 366 | T366E | ACa | GAa | 1 | 1 | AY.25 | 0.000006 |
N | 366 | T366P | Aca | Cca | 1 | 1 | AY.25 | 0.000006 |
N | 366 | T366N | aCA | aAT | 1 | 1 | AY.25 | 0.000006 |
N | 366 | T366T | acA | acC | 1 | 1 | AY.26 | 0.000028 |
N | 366 | T366A | Aca | Gca | 1 | 1 | AY.26 | 0.000028 |
N | 366 | T366K | aCa | aAa | 1 | 1 | AY.26 | 0.000028 |
N | 366 | T366R | aCa | aGa | 1 | 1 | AY.29.1 | 0.000221 |
N | 366 | T366A | Aca | Gca | 1 | 1 | AY.3 | 0.00001 |
N | 366 | T366A | Aca | Gca | 1 | 1 | AY.3.1 | 0.000085 |
N | 366 | T366S | Aca | Tca | 1 | 1 | AY.32 | 0.000532 |
N | 366 | T366T | acA | acG | 1 | 1 | AY.33 | 0.000067 |
N | 366 | T366I | aCa | aTa | 1 | 1 | AY.35 | 0.000233 |
N | 366 | T366A | Aca | Gca | 1 | 1 | AY.35 | 0.000233 |
N | 366 | T366T | acA | acG | 1 | 1 | AY.36 | 0.000148 |
N | 366 | T366P | Aca | Cca | 1 | 1 | AY.39 | 0.000025 |
N | 366 | T366A | Aca | Gca | 1 | 1 | AY.39 | 0.000025 |
N | 366 | T366del1 | acA | ac- | 1 | 1 | AY.39 | 0.000025 |
N | 366 | T366P | Aca | Cca | 1 | 1 | AY.4.2.1 | 0.000149 |
N | 366 | T366I | aCa | aTa | 1 | 1 | AY.4.5 | 0.000107 |
N | 366 | T366T | acA | acG | 1 | 1 | AY.4.5 | 0.000107 |
N | 366 | T366del | ACA | --- | 1 | 1 | AY.43 | 0.000004 |
N | 366 | T366K | aCa | aAa | 1 | 1 | AY.43 | 0.000004 |
N | 366 | T366del1 | acA | ac- | 1 | 1 | AY.44 | 0.000006 |
N | 366 | T366T | acA | acG | 1 | 1 | AY.45 | 0.000122 |
N | 366 | T366I | aCa | aTa | 1 | 1 | AY.46.1 | 0.001027 |
N | 366 | T366T | acA | acG | 1 | 1 | AY.46.3 | 0.000934 |
N | 366 | T366I | aCa | aTa | 1 | 1 | AY.46.4 | 0.000165 |
N | 366 | T366T | acA | acG | 1 | 1 | AY.46.4 | 0.000165 |
N | 366 | T366T | acA | acC | 1 | 1 | AY.48 | 0.000465 |
N | 366 | T366P | Aca | Cca | 1 | 1 | AY.5 | 0.000021 |
N | 366 | T366I | aCa | aTa | 1 | 1 | AY.5.3 | 0.000337 |
N | 366 | T366I | aCa | aTa | 1 | 1 | AY.52 | 0.000814 |
N | 366 | T366I | aCa | aTa | 1 | 1 | AY.53 | 0.000288 |
N | 366 | T366P | Aca | Cca | 1 | 1 | AY.53 | 0.000288 |
N | 366 | T366S | Aca | Tca | 1 | 1 | AY.54 | 0.000095 |
N | 366 | T366I | aCa | aTa | 1 | 1 | AY.55 | 0.000917 |
N | 366 | T366I | aCa | aTa | 1 | 1 | AY.58 | 0.000907 |
N | 366 | T366I | aCa | aTa | 1 | 1 | AY.62 | 0.000436 |
N | 366 | T366del | ACA | --- | 1 | 1 | AY.67 | 0.000464 |
N | 366 | T366I | aCa | aTa | 1 | 1 | AY.68 | 0.000274 |
N | 366 | T366I | aCa | aTa | 1 | 1 | AY.70 | 0.000209 |
N | 366 | T366I | aCa | aTa | 1 | 1 | AY.72 | 0.001361 |
N | 366 | T366I | aCa | aTa | 1 | 1 | AY.73 | 0.000665 |
N | 366 | T366P | Aca | Cca | 1 | 1 | AY.75 | 0.000056 |
N | 366 | T366T | acA | acG | 1 | 1 | AY.75 | 0.000056 |
N | 366 | T366I | aCa | aTa | 1 | 1 | AY.76 | 0.004831 |
N | 366 | T366I | aCa | aTa | 1 | 1 | AY.79 | 0.001211 |
N | 366 | T366T | acA | acT | 1 | 1 | AY.84 | 0.000437 |
N | 366 | T366I | aCa | aTa | 1 | 1 | AY.9 | 0.000068 |
N | 366 | T366del1 | aCa | a-a | 1 | 1 | AY.9.2 | 0.000037 |
N | 366 | T366I | aCa | aTa | 1 | 1 | AY.91 | 0.00073 |
N | 366 | T366I | aCa | aTa | 1 | 1 | AY.95 | 0.000761 |
N | 366 | T366A | Aca | Gca | 1 | 1 | AY.98 | 0.000079 |
N | 366 | T366A | Aca | Gca | 1 | 1 | AY.98.1 | 0.000048 |
N | 366 | T366T | acA | acG | 1 | 1 | AY.98.1 | 0.000048 |
N | 366 | T366T | acA | acG | 1 | 1 | B | 0.000128 |
N | 366 | T366P | Aca | Cca | 1 | 1 | B.1 | 0.000009 |
N | 366 | T366X | ACa | TAa | 1 | 1 | B.1.1 | 0.000018 |
N | 366 | T366Y | ACA | TAT | 1 | 1 | B.1.1 | 0.000018 |
N | 366 | T366N | aCA | aAT | 1 | 1 | B.1.1 | 0.000018 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.1.13 | 0.035714 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.1.138 | 0.006061 |
N | 366 | T366del | ACA | --- | 1 | 1 | B.1.1.139 | 0.022727 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.1.141 | 0.002012 |
N | 366 | T366T | acA | acG | 1 | 1 | B.1.1.153 | 0.001095 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.1.180 | 0.010753 |
N | 366 | T366A | Aca | Gca | 1 | 1 | B.1.1.181 | 0.004545 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.1.194 | 0.00495 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.1.207 | 0.001182 |
N | 366 | T366K | aCa | aAa | 1 | 1 | B.1.1.214 | 0.000055 |
N | 366 | T366K | aCa | aAa | 1 | 1 | B.1.1.25 | 0.000569 |
N | 366 | T366T | acA | acT | 1 | 1 | B.1.1.27 | 0.00565 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.1.284 | 0.000107 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.1.294 | 0.001266 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.1.301 | 0.001179 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.1.302 | 0.002075 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.1.305 | 0.003861 |
N | 366 | T366del | ACA | --- | 1 | 1 | B.1.1.317 | 0.000412 |
N | 366 | T366A | Aca | Gca | 1 | 1 | B.1.1.318 | 0.000302 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.1.319 | 0.017544 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.1.320 | 0.018182 |
N | 366 | T366K | aCa | aAa | 1 | 1 | B.1.1.33 | 0.000421 |
N | 366 | T366del | ACA | --- | 1 | 1 | B.1.1.37 | 0.000193 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.1.396 | 0.045455 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.1.398 | 0.003226 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.1.406 | 0.006494 |
N | 366 | T366T | acA | acG | 1 | 1 | B.1.1.407 | 0.041667 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.1.442 | 0.018519 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.1.464 | 0.001473 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.1.486 | 0.001577 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.1.487 | 0.005587 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.1.514 | 0.038462 |
N | 366 | T366S | Aca | Tca | 1 | 1 | B.1.1.63 | 0.000386 |
N | 366 | T366W | ACA | TGG | 1 | 1 | B.1.1.7 | 0.000001 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.1.90 | 0.1 |
N | 366 | T366P | Aca | Cca | 1 | 1 | B.1.13 | 0.002375 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.134 | 0.005464 |
N | 366 | T366K | aCa | aAa | 1 | 1 | B.1.160 | 0.000031 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.160.14 | 0.002119 |
N | 366 | T366P | Aca | Cca | 1 | 1 | B.1.160.16 | 0.000929 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.160.26 | 0.002421 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.160.32 | 0.004292 |
N | 366 | T366del | ACA | --- | 1 | 1 | B.1.162 | 0.005025 |
N | 366 | T366P | Aca | Cca | 1 | 1 | B.1.177.10 | 0.000878 |
N | 366 | T366T | acA | acG | 1 | 1 | B.1.177.21 | 0.000076 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.177.33 | 0.001645 |
N | 366 | T366A | Aca | Gca | 1 | 1 | B.1.177.4 | 0.000211 |
N | 366 | T366del1 | Aca | -ca | 1 | 1 | B.1.177.45 | 0.000381 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.177.48 | 0.003125 |
N | 366 | T366T | acA | acG | 1 | 1 | B.1.177.54 | 0.000606 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.177.54 | 0.000606 |
N | 366 | T366A | Aca | Gca | 1 | 1 | B.1.177.60 | 0.000218 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.177.63 | 0.002703 |
N | 366 | T366A | Aca | Gca | 1 | 1 | B.1.177.7 | 0.000165 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.177.70 | 0.005917 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.177.79 | 0.002342 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.177.8 | 0.000752 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.177.9 | 0.001332 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.199 | 0.004132 |
N | 366 | T366del | ACA | --- | 1 | 1 | B.1.2 | 0.000009 |
N | 366 | T366R | aCa | aGa | 1 | 1 | B.1.2 | 0.000009 |
N | 366 | T366X | ACa | TAa | 1 | 1 | B.1.2 | 0.000009 |
N | 366 | T366S | Aca | Tca | 1 | 1 | B.1.2 | 0.000009 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.214.1 | 0.02 |
N | 366 | T366S | Aca | Tca | 1 | 1 | B.1.221 | 0.000071 |
N | 366 | T366K | aCa | aAa | 1 | 1 | B.1.221 | 0.000071 |
N | 366 | T366Q | ACa | CAa | 1 | 1 | B.1.221 | 0.000071 |
N | 366 | T366X | ACa | TAa | 1 | 1 | B.1.221 | 0.000071 |
N | 366 | T366del | ACA | --- | 1 | 1 | B.1.221 | 0.000071 |
N | 366 | T366P | Aca | Cca | 1 | 1 | B.1.221 | 0.000071 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.221 | 0.000071 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.221.3 | 0.000833 |
N | 366 | T366A | Aca | Gca | 1 | 1 | B.1.222 | 0.001692 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.23 | 0.006061 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.240 | 0.000216 |
N | 366 | T366T | acA | acC | 1 | 1 | B.1.240 | 0.000216 |
N | 366 | T366T | acA | acG | 1 | 1 | B.1.258 | 0.000067 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.349 | 0.000715 |
N | 366 | T366del | ACA | --- | 1 | 1 | B.1.351 | 0.00003 |
N | 366 | T366T | acA | acT | 1 | 1 | B.1.351 | 0.00003 |
N | 366 | T366K | aCa | aAa | 1 | 1 | B.1.351 | 0.00003 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.355 | 0.011111 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.36.36 | 0.000602 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.36.39 | 0.002217 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.369 | 0.000285 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.370 | 0.008 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.371 | 0.001122 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.400 | 0.000429 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.409 | 0.000781 |
N | 366 | T366del | ACA | --- | 1 | 1 | B.1.415 | 0.014286 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.426 | 0.001009 |
N | 366 | T366K | aCa | aAa | 1 | 1 | B.1.438.1 | 0.000107 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.470 | 0.001404 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.503 | 0.002488 |
N | 366 | T366del | ACA | --- | 1 | 1 | B.1.526 | 0.000024 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.533 | 0.009615 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.535 | 0.028571 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.564 | 0.000426 |
N | 366 | T366K | aCa | aAa | 1 | 1 | B.1.564.1 | 0.001577 |
N | 366 | T366T | acA | acG | 1 | 1 | B.1.572 | 0.025 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.586 | 0.010989 |
N | 366 | T366A | Aca | Gca | 1 | 1 | B.1.589 | 0.007576 |
N | 366 | T366P | Aca | Cca | 1 | 1 | B.1.596 | 0.000087 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.597 | 0.00463 |
N | 366 | T366P | Aca | Cca | 1 | 1 | B.1.612 | 0.002653 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.615 | 0.04 |
N | 366 | T366P | Aca | Cca | 1 | 1 | B.1.617.2 | 0.000004 |
N | 366 | T366del1 | acA | ac- | 1 | 1 | B.1.617.2 | 0.000004 |
N | 366 | T366K | aCa | aAa | 1 | 1 | B.1.617.2 | 0.000004 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.618 | 0.004032 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.619 | 0.000871 |
N | 366 | T366T | acA | acG | 1 | 1 | B.1.623 | 0.000536 |
N | 366 | T366del | ACA | --- | 1 | 1 | B.1.630 | 0.005236 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.76 | 0.011364 |
N | 366 | T366A | Aca | Gca | 1 | 1 | B.1.8 | 0.001972 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.1.9.4 | 0.006135 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.20 | 0.023256 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.6 | 0.00091 |
N | 366 | T366I | aCa | aTa | 1 | 1 | B.6.8 | 0.008264 |
N | 366 | T366I | aCa | aTa | 1 | 1 | C.1.2 | 0.004255 |
N | 366 | T366T | acA | acT | 1 | 1 | C.36 | 0.000911 |
N | 366 | T366T | acA | acG | 1 | 1 | C.36.3 | 0.000567 |
N | 366 | T366del | ACA | --- | 1 | 1 | C.37 | 0.000116 |
N | 366 | T366K | aCa | aAa | 1 | 1 | C.37 | 0.000116 |
N | 366 | T366del1 | acA | ac- | 1 | 1 | C.37 | 0.000116 |
N | 366 | T366T | acA | acG | 1 | 1 | C.37 | 0.000116 |
N | 366 | T366E | ACa | GAa | 1 | 1 | C.37 | 0.000116 |
N | 366 | T366V | ACa | GTa | 1 | 1 | C.37 | 0.000116 |
N | 366 | T366P | Aca | Cca | 1 | 1 | D.2 | 0.000075 |
N | 366 | T366T | acA | acT | 1 | 1 | D.2 | 0.000075 |
N | 366 | T366A | Aca | Gca | 1 | 1 | P.1 | 0.000016 |
N | 366 | T366R | aCa | aGa | 1 | 1 | P.1 | 0.000016 |
N | 366 | T366T | acA | acG | 1 | 1 | P.1 | 0.000016 |
N | 366 | T366M | aCA | aTG | 1 | 1 | P.1 | 0.000016 |
N | 366 | T366I | aCa | aTa | 1 | 1 | P.1.1 | 0.000318 |
N | 366 | T366I | aCa | aTa | 1 | 1 | P.1.16 | 0.000374 |
N | 366 | T366T | acA | acT | 1 | 1 | P.1.17 | 0.000162 |
N | 366 | T366I | aCa | aTa | 1 | 1 | P.1.17 | 0.000162 |
N | 366 | T366I | aCa | aTa | 1 | 1 | P.1.4 | 0.000977 |
N | 366 | T366I | aCa | aTa | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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