CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 365 | P365S | nonsyn | Cca | Tca | 23495 | 23483 | 0.999489 | 29366-29368 | |
N | 365 | P365S | nonsyn | CCA | AGC | 23495 | 5 | 0.000212811 | 29366-29368 | |
N | 365 | P365S | nonsyn | CCA | AGT | 23495 | 4 | 0.000170249 | 29366-29368 | |
N | 365 | P365S | nonsyn | CcA | TcC | 23495 | 2 | 0.0000851245 | 29366-29368 | |
N | 365 | P365S | nonsyn | CcA | TcG | 23495 | 1 | 0.0000425622 | 29366-29368 | |
N | 365 | P365L | nonsyn | cCa | cTa | 11217 | 11050 | 0.985112 | 29366-29368 | |
N | 365 | P365L | nonsyn | CCa | TTa | 11217 | 154 | 0.0137292 | 29366-29368 | |
N | 365 | P365L | nonsyn | cCA | cTT | 11217 | 4 | 0.000356602 | 29366-29368 | |
N | 365 | P365L | nonsyn | cCA | cTC | 11217 | 4 | 0.000356602 | 29366-29368 | |
N | 365 | P365L | nonsyn | cCA | cTG | 11217 | 3 | 0.000267451 | 29366-29368 | |
N | 365 | P365L | nonsyn | CCA | TTG | 11217 | 2 | 0.000178301 | 29366-29368 | |
N | 365 | P365P | syn | ccA | ccT | 1300 | 1093 | 0.840769 | 29366-29368 | |
N | 365 | P365P | syn | ccA | ccG | 1300 | 155 | 0.119231 | 29366-29368 | |
N | 365 | P365P | syn | ccA | ccC | 1300 | 52 | 0.04 | 29366-29368 | |
N | 365 | P365Q | nonsyn | cCa | cAa | 454 | 448 | 0.986784 | 29366-29368 | |
N | 365 | P365Q | nonsyn | cCA | cAG | 454 | 6 | 0.0132159 | 29366-29368 | |
N | 365 | P365R | nonsyn | cCa | cGa | 179 | 157 | 0.877095 | 29366-29368 | |
N | 365 | P365R | nonsyn | CCa | AGa | 179 | 11 | 0.0614525 | 29366-29368 | |
N | 365 | P365R | nonsyn | cCA | cGC | 179 | 4 | 0.0223464 | 29366-29368 | |
N | 365 | P365R | nonsyn | cCA | cGG | 179 | 3 | 0.0167598 | 29366-29368 | |
N | 365 | P365R | nonsyn | cCA | cGT | 179 | 2 | 0.0111732 | 29366-29368 | |
N | 365 | P365R | nonsyn | CCA | AGG | 179 | 2 | 0.0111732 | 29366-29368 | |
N | 365 | P365T | nonsyn | Cca | Aca | 162 | 140 | 0.864198 | 29366-29368 | |
N | 365 | P365T | nonsyn | CcA | AcT | 162 | 10 | 0.0617284 | 29366-29368 | |
N | 365 | P365T | nonsyn | CcA | AcC | 162 | 8 | 0.0493827 | 29366-29368 | |
N | 365 | P365T | nonsyn | CcA | AcG | 162 | 4 | 0.0246914 | 29366-29368 | |
N | 365 | P365K | nonsyn | CCa | AAa | 71 | 63 | 0.887324 | 29366-29368 | |
N | 365 | P365K | nonsyn | CCA | AAG | 71 | 8 | 0.112676 | 29366-29368 | |
N | 365 | P365del | del | CCA | --- | 57 | 57 | 1 | 29366-29368 | |
N | 365 | P365A | nonsyn | Cca | Gca | 41 | 35 | 0.853659 | 29366-29368 | |
N | 365 | P365A | nonsyn | CcA | GcT | 41 | 3 | 0.0731707 | 29366-29368 | |
N | 365 | P365A | nonsyn | CcA | GcC | 41 | 2 | 0.0487805 | 29366-29368 | |
N | 365 | P365A | nonsyn | CcA | GcG | 41 | 1 | 0.0243902 | 29366-29368 | |
N | 365 | P365N | nonsyn | CCA | AAT | 39 | 21 | 0.538462 | 29366-29368 | |
N | 365 | P365N | nonsyn | CCA | AAC | 39 | 18 | 0.461538 | 29366-29368 | |
N | 365 | P365I | nonsyn | CCa | ATa | 31 | 17 | 0.548387 | 29366-29368 | |
N | 365 | P365I | nonsyn | CCA | ATT | 31 | 10 | 0.322581 | 29366-29368 | |
N | 365 | P365I | nonsyn | CCA | ATC | 31 | 4 | 0.129032 | 29366-29368 | |
N | 365 | P365H | nonsyn | cCA | cAT | 24 | 13 | 0.541667 | 29366-29368 | |
N | 365 | P365H | nonsyn | cCA | cAC | 24 | 11 | 0.458333 | 29366-29368 | |
N | 365 | P365E | nonsyn | CCa | GAa | 17 | 15 | 0.882353 | 29366-29368 | |
N | 365 | P365E | nonsyn | CCA | GAG | 17 | 2 | 0.117647 | 29366-29368 | |
N | 365 | P365X | nonsyn | CCa | TAa | 15 | 10 | 0.666667 | 29366-29368 | |
N | 365 | P365X | nonsyn | CCa | TGa | 15 | 5 | 0.333333 | 29366-29368 | |
N | 365 | P365V | nonsyn | CCa | GTa | 13 | 7 | 0.538462 | 29366-29368 | |
N | 365 | P365D | nonsyn | CCA | GAT | 13 | 7 | 0.538462 | 29366-29368 | |
N | 365 | P365D | nonsyn | CCA | GAC | 13 | 6 | 0.461538 | 29366-29368 | |
N | 365 | P365V | nonsyn | CCA | GTT | 13 | 5 | 0.384615 | 29366-29368 | |
N | 365 | P365V | nonsyn | CCA | GTC | 13 | 1 | 0.0769231 | 29366-29368 | |
N | 365 | P365Y | nonsyn | CCA | TAT | 8 | 4 | 0.5 | 29366-29368 | |
N | 365 | P365Y | nonsyn | CCA | TAC | 8 | 4 | 0.5 | 29366-29368 | |
N | 365 | P365F | nonsyn | CCA | TTT | 4 | 3 | 0.75 | 29366-29368 | |
N | 365 | P365C | nonsyn | CCA | TGC | 4 | 3 | 0.75 | 29366-29368 | |
N | 365 | P365del1 | del | ccA | cc- | 4 | 3 | 0.75 | 29366-29368 | |
N | 365 | P365F | nonsyn | CCA | TTC | 4 | 1 | 0.25 | 29366-29368 | |
N | 365 | P365C | nonsyn | CCA | TGT | 4 | 1 | 0.25 | 29366-29368 | |
N | 365 | P365del1 | del | Cca | -ca | 4 | 1 | 0.25 | 29366-29368 | |
N | 365 | P365M | nonsyn | CCA | ATG | 3 | 3 | 1 | 29366-29368 | |
N | 365 | P365G | nonsyn | CCa | GGa | 2 | 2 | 1 | 29366-29368 | |
N | 365 | P365del2 | del | cCA | c-- | 2 | 1 | 0.5 | 29366-29368 | |
N | 365 | P365del2 | del | CCa | --a | 2 | 1 | 0.5 | 29366-29368 | |
N | 365 | P365W | nonsyn | CCA | TGG | 1 | 1 | 1 | 29366-29368 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 365 | P365S | Cca | Tca | 23483 | 23495 | All | 0.004491 |
N | 365 | P365S | CCA | AGC | 5 | 23495 | All | 0.000001 |
N | 365 | P365S | CCA | AGT | 4 | 23495 | All | 0.000001 |
N | 365 | P365S | CcA | TcC | 2 | 23495 | All | 0 |
N | 365 | P365S | CcA | TcG | 1 | 23495 | All | 0 |
N | 365 | P365L | cCa | cTa | 11050 | 11217 | All | 0.002113 |
N | 365 | P365L | CCa | TTa | 154 | 11217 | All | 0.000029 |
N | 365 | P365L | cCA | cTC | 4 | 11217 | All | 0.000001 |
N | 365 | P365L | cCA | cTT | 4 | 11217 | All | 0.000001 |
N | 365 | P365L | cCA | cTG | 3 | 11217 | All | 0.000001 |
N | 365 | P365L | CCA | TTG | 2 | 11217 | All | 0 |
N | 365 | P365S | Cca | Tca | 6485 | 6485 | B.1.177 | 0.085392 |
N | 365 | P365S | Cca | Tca | 6016 | 6016 | B.1.177.12 | 0.912621 |
N | 365 | P365L | cCa | cTa | 4001 | 4001 | AY.4 | 0.006227 |
N | 365 | P365L | cCa | cTa | 1895 | 1912 | B.1.1.7 | 0.001696 |
N | 365 | P365L | CCa | TTa | 6 | 1912 | B.1.1.7 | 0.000005 |
N | 365 | P365L | cCA | cTC | 4 | 1912 | B.1.1.7 | 0.000004 |
N | 365 | P365L | cCA | cTT | 3 | 1912 | B.1.1.7 | 0.000003 |
N | 365 | P365L | cCA | cTG | 2 | 1912 | B.1.1.7 | 0.000002 |
N | 365 | P365L | CCA | TTG | 2 | 1912 | B.1.1.7 | 0.000002 |
N | 365 | P365S | Cca | Tca | 1574 | 1574 | A.2.5 | 0.785429 |
N | 365 | P365P | ccA | ccT | 1093 | 1300 | All | 0.000209 |
N | 365 | P365P | ccA | ccG | 155 | 1300 | All | 0.00003 |
N | 365 | P365P | ccA | ccC | 52 | 1300 | All | 0.00001 |
N | 365 | P365L | cCa | cTa | 1215 | 1215 | AY.5 | 0.025089 |
N | 365 | P365S | Cca | Tca | 1213 | 1213 | B.1.177.35 | 0.838286 |
N | 365 | P365S | Cca | Tca | 1035 | 1035 | B.1.177.42 | 0.92576 |
N | 365 | P365S | Cca | Tca | 943 | 943 | B.1.177.44 | 0.489362 |
N | 365 | P365S | Cca | Tca | 879 | 888 | B.1.1.7 | 0.000787 |
N | 365 | P365S | CCA | AGT | 4 | 888 | B.1.1.7 | 0.000004 |
N | 365 | P365S | CCA | AGC | 4 | 888 | B.1.1.7 | 0.000004 |
N | 365 | P365S | CcA | TcG | 1 | 888 | B.1.1.7 | 0.000001 |
N | 365 | P365P | ccA | ccT | 780 | 780 | AU.1 | 0.987342 |
N | 365 | P365L | cCa | cTa | 665 | 667 | AY.25 | 0.004 |
N | 365 | P365L | CCa | TTa | 2 | 667 | AY.25 | 0.000012 |
N | 365 | P365S | Cca | Tca | 585 | 585 | B.1.177.11 | 0.993209 |
N | 365 | P365S | Cca | Tca | 563 | 563 | B.1.177.33 | 0.925987 |
N | 365 | P365S | Cca | Tca | 499 | 499 | A.2.5.2 | 0.784591 |
N | 365 | P365Q | cCa | cAa | 448 | 454 | All | 0.000086 |
N | 365 | P365Q | cCA | cAG | 6 | 454 | All | 0.000001 |
N | 365 | P365S | Cca | Tca | 405 | 405 | AY.4 | 0.00063 |
N | 365 | P365S | Cca | Tca | 390 | 390 | B.1.177.41 | 0.975 |
N | 365 | P365L | cCa | cTa | 355 | 355 | B.1.617.2 | 0.001337 |
N | 365 | P365L | cCa | cTa | 330 | 330 | AY.44 | 0.002009 |
N | 365 | P365S | Cca | Tca | 324 | 324 | B.1.177.43 | 0.478582 |
N | 365 | P365L | cCa | cTa | 213 | 239 | B.1.177 | 0.002805 |
N | 365 | P365L | CCa | TTa | 26 | 239 | B.1.177 | 0.000342 |
N | 365 | P365L | cCa | cTa | 205 | 205 | AY.51 | 0.186364 |
N | 365 | P365L | cCa | cTa | 184 | 184 | B.1.2 | 0.00162 |
N | 365 | P365Q | cCa | cAa | 180 | 180 | AY.53 | 0.051754 |
N | 365 | P365S | Cca | Tca | 179 | 179 | A.2.5.1 | 0.860577 |
N | 365 | P365R | cCa | cGa | 157 | 179 | All | 0.00003 |
N | 365 | P365R | CCa | AGa | 11 | 179 | All | 0.000002 |
N | 365 | P365R | cCA | cGC | 4 | 179 | All | 0.000001 |
N | 365 | P365R | cCA | cGG | 3 | 179 | All | 0.000001 |
N | 365 | P365R | cCA | cGT | 2 | 179 | All | 0 |
N | 365 | P365R | CCA | AGG | 2 | 179 | All | 0 |
N | 365 | P365S | Cca | Tca | 173 | 173 | B.1.177.40 | 0.891753 |
N | 365 | P365T | Cca | Aca | 140 | 162 | All | 0.000027 |
N | 365 | P365T | CcA | AcT | 10 | 162 | All | 0.000002 |
N | 365 | P365T | CcA | AcC | 8 | 162 | All | 0.000002 |
N | 365 | P365T | CcA | AcG | 4 | 162 | All | 0.000001 |
N | 365 | P365S | Cca | Tca | 159 | 159 | B.1.1 | 0.002884 |
N | 365 | P365S | Cca | Tca | 156 | 158 | B.1 | 0.001429 |
N | 365 | P365S | CcA | TcC | 2 | 158 | B.1 | 0.000018 |
N | 365 | P365Q | cCa | cAa | 131 | 131 | AY.4 | 0.000204 |
N | 365 | P365P | ccA | ccG | 59 | 129 | B.1.1.7 | 0.000053 |
N | 365 | P365P | ccA | ccC | 36 | 129 | B.1.1.7 | 0.000032 |
N | 365 | P365P | ccA | ccT | 34 | 129 | B.1.1.7 | 0.00003 |
N | 365 | P365R | cCa | cGa | 120 | 120 | B.1.1.170 | 0.149626 |
N | 365 | P365L | cCa | cTa | 118 | 118 | AY.20 | 0.004586 |
N | 365 | P365S | Cca | Tca | 112 | 112 | AY.3 | 0.001114 |
N | 365 | P365L | cCa | cTa | 104 | 104 | AY.103 | 0.000646 |
N | 365 | P365S | Cca | Tca | 103 | 103 | B.1.617.2 | 0.000388 |
N | 365 | P365S | Cca | Tca | 95 | 95 | AY.9.2 | 0.003489 |
N | 365 | P365S | Cca | Tca | 90 | 90 | B.1.177.38 | 0.9375 |
N | 365 | P365P | ccA | ccT | 86 | 86 | B.1.427 | 0.004343 |
N | 365 | P365S | Cca | Tca | 83 | 83 | AY.43 | 0.000368 |
N | 365 | P365T | Cca | Aca | 76 | 83 | B.1.1.7 | 0.000068 |
N | 365 | P365T | CcA | AcG | 3 | 83 | B.1.1.7 | 0.000003 |
N | 365 | P365T | CcA | AcC | 2 | 83 | B.1.1.7 | 0.000002 |
N | 365 | P365T | CcA | AcT | 2 | 83 | B.1.1.7 | 0.000002 |
N | 365 | P365L | cCa | cTa | 80 | 80 | B.1.526 | 0.00188 |
N | 365 | P365S | Cca | Tca | 78 | 78 | A.2.5.3 | 0.804124 |
N | 365 | P365S | Cca | Tca | 77 | 77 | AY.25 | 0.000463 |
N | 365 | P365L | cCa | cTa | 76 | 77 | AY.3 | 0.000756 |
N | 365 | P365L | CCa | TTa | 1 | 77 | AY.3 | 0.00001 |
N | 365 | P365L | cCa | cTa | 73 | 74 | AY.43 | 0.000323 |
N | 365 | P365L | cCA | cTG | 1 | 74 | AY.43 | 0.000004 |
N | 365 | P365K | CCa | AAa | 63 | 71 | All | 0.000012 |
N | 365 | P365K | CCA | AAG | 8 | 71 | All | 0.000002 |
N | 365 | P365P | ccA | ccT | 61 | 71 | AY.4 | 0.000095 |
N | 365 | P365P | ccA | ccG | 9 | 71 | AY.4 | 0.000014 |
N | 365 | P365P | ccA | ccC | 1 | 71 | AY.4 | 0.000002 |
N | 365 | P365L | cCa | cTa | 70 | 70 | B.1.637 | 0.005115 |
N | 365 | P365L | CCa | TTa | 69 | 69 | B.1.177.35 | 0.047685 |
N | 365 | P365S | Cca | Tca | 69 | 69 | B.1.429 | 0.001623 |
N | 365 | P365L | cCa | cTa | 67 | 67 | B.1.1.222 | 0.013668 |
N | 365 | P365S | Cca | Tca | 66 | 66 | B.1.2 | 0.000581 |
N | 365 | P365S | Cca | Tca | 65 | 65 | AY.44 | 0.000396 |
N | 365 | P365S | Cca | Tca | 62 | 62 | B.1.177.36 | 1 |
N | 365 | P365S | Cca | Tca | 60 | 60 | B.1.177.39 | 0.923077 |
N | 365 | P365L | cCa | cTa | 58 | 58 | B.1.351 | 0.001724 |
N | 365 | P365L | cCa | cTa | 58 | 58 | P.1 | 0.000914 |
N | 365 | P365del | CCA | --- | 57 | 57 | All | 0.000011 |
N | 365 | P365L | cCa | cTa | 53 | 53 | AY.4.2 | 0.00115 |
N | 365 | P365Q | cCa | cAa | 47 | 52 | B.1.1.7 | 0.000042 |
N | 365 | P365Q | cCA | cAG | 5 | 52 | B.1.1.7 | 0.000004 |
N | 365 | P365L | cCa | cTa | 51 | 51 | AY.26 | 0.001444 |
N | 365 | P365L | cCa | cTa | 49 | 49 | AY.118 | 0.00307 |
N | 365 | P365L | cCa | cTa | 49 | 49 | AY.39 | 0.001211 |
N | 365 | P365S | Cca | Tca | 46 | 46 | B.1.160.30 | 0.136905 |
N | 365 | P365L | CCa | TTa | 37 | 46 | B.1.221 | 0.002628 |
N | 365 | P365L | cCa | cTa | 9 | 46 | B.1.221 | 0.000639 |
N | 365 | P365L | cCa | cTa | 46 | 46 | B.1.429 | 0.001082 |
N | 365 | P365A | Cca | Gca | 35 | 41 | All | 0.000007 |
N | 365 | P365A | CcA | GcT | 3 | 41 | All | 0.000001 |
N | 365 | P365A | CcA | GcC | 2 | 41 | All | 0 |
N | 365 | P365A | CcA | GcG | 1 | 41 | All | 0 |
N | 365 | P365L | cCa | cTa | 40 | 41 | B.1 | 0.000366 |
N | 365 | P365L | CCa | TTa | 1 | 41 | B.1 | 0.000009 |
N | 365 | P365L | cCa | cTa | 41 | 41 | B.1.1.25 | 0.023309 |
N | 365 | P365K | CCa | AAa | 34 | 41 | B.1.1.7 | 0.00003 |
N | 365 | P365K | CCA | AAG | 7 | 41 | B.1.1.7 | 0.000006 |
N | 365 | P365S | Cca | Tca | 40 | 41 | P.1 | 0.00063 |
N | 365 | P365S | CCA | AGC | 1 | 41 | P.1 | 0.000016 |
N | 365 | P365S | Cca | Tca | 40 | 40 | AY.103 | 0.000248 |
N | 365 | P365L | cCa | cTa | 40 | 40 | B.1.1.338 | 0.689655 |
N | 365 | P365N | CCA | AAT | 21 | 39 | All | 0.000004 |
N | 365 | P365N | CCA | AAC | 18 | 39 | All | 0.000003 |
N | 365 | P365L | cCa | cTa | 39 | 39 | B.1.1.28 | 0.012138 |
N | 365 | P365L | cCa | cTa | 38 | 38 | B.1.1 | 0.000689 |
N | 365 | P365L | cCa | cTa | 34 | 34 | AY.29 | 0.000536 |
N | 365 | P365L | cCa | cTa | 33 | 34 | B.1.627 | 0.066667 |
N | 365 | P365L | CCa | TTa | 1 | 34 | B.1.627 | 0.00202 |
N | 365 | P365T | Cca | Aca | 25 | 33 | B.1 | 0.000229 |
N | 365 | P365T | CcA | AcT | 4 | 33 | B.1 | 0.000037 |
N | 365 | P365T | CcA | AcC | 4 | 33 | B.1 | 0.000037 |
N | 365 | P365S | Cca | Tca | 33 | 33 | B.1.177.37 | 0.891892 |
N | 365 | P365I | CCa | ATa | 17 | 31 | All | 0.000003 |
N | 365 | P365I | CCA | ATT | 10 | 31 | All | 0.000002 |
N | 365 | P365I | CCA | ATC | 4 | 31 | All | 0.000001 |
N | 365 | P365Q | cCa | cAa | 30 | 30 | B.1 | 0.000275 |
N | 365 | P365S | Cca | Tca | 29 | 29 | B.1.427 | 0.001464 |
N | 365 | P365L | cCa | cTa | 28 | 28 | AY.39.1 | 0.001109 |
N | 365 | P365S | Cca | Tca | 28 | 28 | B.1.282 | 0.41791 |
N | 365 | P365L | cCa | cTa | 28 | 28 | Q.1 | 0.003537 |
N | 365 | P365R | CCa | AGa | 10 | 27 | B.1.1.7 | 0.000009 |
N | 365 | P365R | cCa | cGa | 7 | 27 | B.1.1.7 | 0.000006 |
N | 365 | P365R | cCA | cGC | 3 | 27 | B.1.1.7 | 0.000003 |
N | 365 | P365R | cCA | cGG | 3 | 27 | B.1.1.7 | 0.000003 |
N | 365 | P365R | cCA | cGT | 2 | 27 | B.1.1.7 | 0.000002 |
N | 365 | P365R | CCA | AGG | 2 | 27 | B.1.1.7 | 0.000002 |
N | 365 | P365I | CCa | ATa | 14 | 26 | B.1.1.7 | 0.000013 |
N | 365 | P365I | CCA | ATT | 8 | 26 | B.1.1.7 | 0.000007 |
N | 365 | P365I | CCA | ATC | 4 | 26 | B.1.1.7 | 0.000004 |
N | 365 | P365S | Cca | Tca | 26 | 26 | B.1.177.57 | 0.007305 |
N | 365 | P365N | CCA | AAT | 13 | 25 | B.1.1.7 | 0.000012 |
N | 365 | P365N | CCA | AAC | 12 | 25 | B.1.1.7 | 0.000011 |
N | 365 | P365L | cCa | cTa | 25 | 25 | B.1.596.1 | 0.233645 |
N | 365 | P365H | cCA | cAT | 13 | 24 | All | 0.000002 |
N | 365 | P365H | cCA | cAC | 11 | 24 | All | 0.000002 |
N | 365 | P365L | cCa | cTa | 24 | 24 | AY.102 | 0.000636 |
N | 365 | P365S | Cca | Tca | 23 | 23 | B.1.36 | 0.003356 |
N | 365 | P365P | ccA | ccT | 15 | 22 | B.1 | 0.000137 |
N | 365 | P365P | ccA | ccC | 4 | 22 | B.1 | 0.000037 |
N | 365 | P365P | ccA | ccG | 3 | 22 | B.1 | 0.000027 |
N | 365 | P365P | ccA | ccT | 20 | 21 | AY.6 | 0.000823 |
N | 365 | P365P | ccA | ccG | 1 | 21 | AY.6 | 0.000041 |
N | 365 | P365L | cCa | cTa | 19 | 19 | AY.109 | 0.014053 |
N | 365 | P365K | CCa | AAa | 18 | 18 | B.1 | 0.000165 |
N | 365 | P365E | CCa | GAa | 15 | 17 | All | 0.000003 |
N | 365 | P365E | CCA | GAG | 2 | 17 | All | 0 |
N | 365 | P365L | cCa | cTa | 17 | 17 | AY.9.2 | 0.000624 |
N | 365 | P365S | Cca | Tca | 17 | 17 | B.1.1.519 | 0.000675 |
N | 365 | P365L | cCa | cTa | 17 | 17 | B.1.1.519 | 0.000675 |
N | 365 | P365L | cCa | cTa | 17 | 17 | B.1.237 | 0.084577 |
N | 365 | P365S | Cca | Tca | 17 | 17 | P.1.15 | 0.00395 |
N | 365 | P365S | Cca | Tca | 16 | 16 | B.1.1.420 | 0.016097 |
N | 365 | P365A | Cca | Gca | 14 | 16 | B.1.1.7 | 0.000013 |
N | 365 | P365A | CcA | GcT | 1 | 16 | B.1.1.7 | 0.000001 |
N | 365 | P365A | CcA | GcC | 1 | 16 | B.1.1.7 | 0.000001 |
N | 365 | P365S | Cca | Tca | 16 | 16 | B.1.177.34 | 0.842105 |
N | 365 | P365L | cCa | cTa | 16 | 16 | B.1.234 | 0.002111 |
N | 365 | P365X | CCa | TAa | 10 | 15 | All | 0.000002 |
N | 365 | P365X | CCa | TGa | 5 | 15 | All | 0.000001 |
N | 365 | P365S | Cca | Tca | 15 | 15 | B.1.351 | 0.000446 |
N | 365 | P365S | Cca | Tca | 14 | 14 | AY.39 | 0.000346 |
N | 365 | P365S | Cca | Tca | 14 | 14 | B | 0.001789 |
N | 365 | P365L | cCa | cTa | 14 | 14 | B.1.160 | 0.000437 |
N | 365 | P365L | cCa | cTa | 14 | 14 | P.1.14 | 0.000669 |
N | 365 | P365D | CCA | GAT | 7 | 13 | All | 0.000001 |
N | 365 | P365V | CCa | GTa | 7 | 13 | All | 0.000001 |
N | 365 | P365D | CCA | GAC | 6 | 13 | All | 0.000001 |
N | 365 | P365V | CCA | GTT | 5 | 13 | All | 0.000001 |
N | 365 | P365V | CCA | GTC | 1 | 13 | All | 0 |
N | 365 | P365L | cCa | cTa | 13 | 13 | AY.100 | 0.000598 |
N | 365 | P365L | cCa | cTa | 13 | 13 | AY.75 | 0.000728 |
N | 365 | P365L | cCa | cTa | 13 | 13 | B.1.1.307 | 0.032911 |
N | 365 | P365L | cCa | cTa | 13 | 13 | B.1.1.316 | 0.012026 |
N | 365 | P365S | Cca | Tca | 13 | 13 | B.1.160 | 0.000405 |
N | 365 | P365S | Cca | Tca | 13 | 13 | B.1.177.6 | 0.012695 |
N | 365 | P365S | Cca | Tca | 13 | 13 | B.1.526 | 0.000306 |
N | 365 | P365P | ccA | ccT | 11 | 13 | B.1.617.2 | 0.000041 |
N | 365 | P365P | ccA | ccG | 2 | 13 | B.1.617.2 | 0.000008 |
N | 365 | P365L | cCa | cTa | 12 | 13 | C.37 | 0.001393 |
N | 365 | P365L | cCA | cTT | 1 | 13 | C.37 | 0.000116 |
N | 365 | P365L | cCa | cTa | 12 | 12 | AY.119 | 0.000424 |
N | 365 | P365S | Cca | Tca | 12 | 12 | AY.120 | 0.000446 |
N | 365 | P365L | cCa | cTa | 12 | 12 | AY.42 | 0.000483 |
N | 365 | P365S | Cca | Tca | 12 | 12 | AY.54 | 0.001144 |
N | 365 | P365E | CCa | GAa | 11 | 12 | B.1.1.7 | 0.00001 |
N | 365 | P365E | CCA | GAG | 1 | 12 | B.1.1.7 | 0.000001 |
N | 365 | P365P | ccA | ccT | 6 | 12 | B.1.2 | 0.000053 |
N | 365 | P365P | ccA | ccG | 5 | 12 | B.1.2 | 0.000044 |
N | 365 | P365P | ccA | ccC | 1 | 12 | B.1.2 | 0.000009 |
N | 365 | P365L | cCa | cTa | 12 | 12 | P.2 | 0.00224 |
N | 365 | P365L | cCa | cTa | 11 | 11 | AY.33 | 0.000735 |
N | 365 | P365S | Cca | Tca | 11 | 11 | AY.4.2 | 0.000239 |
N | 365 | P365S | Cca | Tca | 11 | 11 | AY.5 | 0.000227 |
N | 365 | P365H | cCA | cAT | 6 | 11 | B.1.1.7 | 0.000005 |
N | 365 | P365H | cCA | cAC | 5 | 11 | B.1.1.7 | 0.000004 |
N | 365 | P365S | Cca | Tca | 11 | 11 | B.1.177.75 | 0.011446 |
N | 365 | P365S | Cca | Tca | 11 | 11 | B.1.525 | 0.001245 |
N | 365 | P365del | CCA | --- | 11 | 11 | B.1.621 | 0.000974 |
N | 365 | P365L | cCa | cTa | 10 | 10 | AM.4 | 0.035714 |
N | 365 | P365S | Cca | Tca | 10 | 10 | AY.102 | 0.000265 |
N | 365 | P365L | cCa | cTa | 10 | 10 | AY.120 | 0.000372 |
N | 365 | P365P | ccA | ccG | 6 | 10 | AY.44 | 0.000037 |
N | 365 | P365P | ccA | ccT | 3 | 10 | AY.44 | 0.000018 |
N | 365 | P365P | ccA | ccC | 1 | 10 | AY.44 | 0.000006 |
N | 365 | P365P | ccA | ccG | 9 | 10 | B.1.1 | 0.000163 |
N | 365 | P365P | ccA | ccT | 1 | 10 | B.1.1 | 0.000018 |
N | 365 | P365S | Cca | Tca | 10 | 10 | B.1.1.277 | 0.007587 |
N | 365 | P365L | cCa | cTa | 10 | 10 | B.1.1.33 | 0.004209 |
N | 365 | P365X | CCa | TAa | 6 | 10 | B.1.1.7 | 0.000005 |
N | 365 | P365V | CCa | GTa | 5 | 10 | B.1.1.7 | 0.000004 |
N | 365 | P365X | CCa | TGa | 4 | 10 | B.1.1.7 | 0.000004 |
N | 365 | P365V | CCA | GTT | 4 | 10 | B.1.1.7 | 0.000004 |
N | 365 | P365V | CCA | GTC | 1 | 10 | B.1.1.7 | 0.000001 |
N | 365 | P365L | cCa | cTa | 10 | 10 | B.1.525 | 0.001132 |
N | 365 | P365L | cCa | cTa | 10 | 10 | B.1.621 | 0.000885 |
N | 365 | P365S | Cca | Tca | 9 | 9 | AY.29 | 0.000142 |
N | 365 | P365S | Cca | Tca | 9 | 9 | AY.46.4 | 0.001481 |
N | 365 | P365L | cCa | cTa | 9 | 9 | AY.98 | 0.000711 |
N | 365 | P365D | CCA | GAC | 5 | 9 | B.1.1.7 | 0.000004 |
N | 365 | P365D | CCA | GAT | 4 | 9 | B.1.1.7 | 0.000004 |
N | 365 | P365S | Cca | Tca | 9 | 9 | B.1.258 | 0.000599 |
N | 365 | P365S | Cca | Tca | 9 | 9 | B.1.388 | 0.818182 |
N | 365 | P365P | ccA | ccT | 8 | 9 | B.1.466.2 | 0.00313 |
N | 365 | P365P | ccA | ccG | 1 | 9 | B.1.466.2 | 0.000391 |
N | 365 | P365S | Cca | Tca | 9 | 9 | B.1.517 | 0.003843 |
N | 365 | P365L | CCa | TTa | 7 | 8 | A.2.5 | 0.003493 |
N | 365 | P365L | cCa | cTa | 1 | 8 | A.2.5 | 0.000499 |
N | 365 | P365Y | CCA | TAC | 4 | 8 | All | 0.000001 |
N | 365 | P365Y | CCA | TAT | 4 | 8 | All | 0.000001 |
N | 365 | P365P | ccA | ccG | 5 | 8 | AY.3 | 0.00005 |
N | 365 | P365P | ccA | ccT | 3 | 8 | AY.3 | 0.00003 |
N | 365 | P365L | cCa | cTa | 8 | 8 | AY.37 | 0.002528 |
N | 365 | P365Q | cCa | cAa | 8 | 8 | AY.44 | 0.000049 |
N | 365 | P365H | cCA | cAT | 4 | 8 | B.1 | 0.000037 |
N | 365 | P365N | CCA | AAT | 4 | 8 | B.1 | 0.000037 |
N | 365 | P365N | CCA | AAC | 4 | 8 | B.1 | 0.000037 |
N | 365 | P365H | cCA | cAC | 4 | 8 | B.1 | 0.000037 |
N | 365 | P365S | Cca | Tca | 8 | 8 | B.1.1.433 | 0.011396 |
N | 365 | P365del | CCA | --- | 8 | 8 | B.1.1.7 | 0.000007 |
N | 365 | P365S | Cca | Tca | 8 | 8 | B.1.177.9 | 0.010652 |
N | 365 | P365L | cCa | cTa | 8 | 8 | B.1.258 | 0.000532 |
N | 365 | P365L | cCa | cTa | 8 | 8 | B.1.427 | 0.000404 |
N | 365 | P365P | ccA | ccT | 8 | 8 | B.1.429 | 0.000188 |
N | 365 | P365L | cCa | cTa | 8 | 8 | D.2 | 0.0006 |
N | 365 | P365P | ccA | ccT | 5 | 8 | P.1 | 0.000079 |
N | 365 | P365P | ccA | ccG | 2 | 8 | P.1 | 0.000032 |
N | 365 | P365P | ccA | ccC | 1 | 8 | P.1 | 0.000016 |
N | 365 | P365S | Cca | Tca | 7 | 7 | AY.104 | 0.013889 |
N | 365 | P365S | Cca | Tca | 7 | 7 | AY.92 | 0.002011 |
N | 365 | P365L | cCa | cTa | 7 | 7 | B.1.1.63 | 0.002701 |
N | 365 | P365P | ccA | ccG | 7 | 7 | B.1.234 | 0.000924 |
N | 365 | P365S | Cca | Tca | 7 | 7 | B.1.503 | 0.017413 |
N | 365 | P365L | cCa | cTa | 7 | 7 | B.1.517 | 0.002989 |
N | 365 | P365L | cCa | cTa | 6 | 6 | A.1 | 0.001691 |
N | 365 | P365S | Cca | Tca | 6 | 6 | AY.100 | 0.000276 |
N | 365 | P365P | ccA | ccT | 5 | 6 | AY.20 | 0.000194 |
N | 365 | P365P | ccA | ccG | 1 | 6 | AY.20 | 0.000039 |
N | 365 | P365S | Cca | Tca | 6 | 6 | AY.26 | 0.00017 |
N | 365 | P365S | Cca | Tca | 6 | 6 | AY.39.1 | 0.000238 |
N | 365 | P365L | cCa | cTa | 6 | 6 | AY.61 | 0.000629 |
N | 365 | P365S | Cca | Tca | 6 | 6 | AY.9 | 0.000406 |
N | 365 | P365R | cCa | cGa | 6 | 6 | B.1 | 0.000055 |
N | 365 | P365L | cCa | cTa | 6 | 6 | B.1.1.1 | 0.00196 |
N | 365 | P365S | Cca | Tca | 6 | 6 | B.1.1.372 | 0.004132 |
N | 365 | P365Y | CCA | TAT | 4 | 6 | B.1.1.7 | 0.000004 |
N | 365 | P365Y | CCA | TAC | 2 | 6 | B.1.1.7 | 0.000002 |
N | 365 | P365S | Cca | Tca | 6 | 6 | B.1.160.32 | 0.025751 |
N | 365 | P365del | CCA | --- | 6 | 6 | B.1.177 | 0.000079 |
N | 365 | P365S | Cca | Tca | 6 | 6 | B.1.243 | 0.000418 |
N | 365 | P365L | cCa | cTa | 6 | 6 | B.1.243 | 0.000418 |
N | 365 | P365L | cCa | cTa | 6 | 6 | B.1.36 | 0.000875 |
N | 365 | P365S | Cca | Tca | 6 | 6 | B.1.375 | 0.004918 |
N | 365 | P365S | Cca | Tca | 6 | 6 | B.1.416.1 | 0.009375 |
N | 365 | P365L | cCa | cTa | 6 | 6 | B.1.595 | 0.001566 |
N | 365 | P365S | Cca | Tca | 6 | 6 | C.36 | 0.005464 |
N | 365 | P365S | Cca | Tca | 5 | 5 | AY.10 | 0.00265 |
N | 365 | P365S | Cca | Tca | 5 | 5 | AY.111 | 0.000916 |
N | 365 | P365L | cCa | cTa | 5 | 5 | AY.113 | 0.000712 |
N | 365 | P365S | Cca | Tca | 5 | 5 | AY.119 | 0.000177 |
N | 365 | P365S | Cca | Tca | 5 | 5 | AY.20 | 0.000194 |
N | 365 | P365L | cCa | cTa | 5 | 5 | AY.23 | 0.000349 |
N | 365 | P365L | cCa | cTa | 5 | 5 | AY.41 | 0.00147 |
N | 365 | P365P | ccA | ccT | 2 | 5 | AY.43 | 0.000009 |
N | 365 | P365P | ccA | ccG | 2 | 5 | AY.43 | 0.000009 |
N | 365 | P365P | ccA | ccC | 1 | 5 | AY.43 | 0.000004 |
N | 365 | P365del | CCA | --- | 5 | 5 | AY.92 | 0.001436 |
N | 365 | P365S | Cca | Tca | 5 | 5 | AY.98.1 | 0.000242 |
N | 365 | P365S | Cca | Tca | 5 | 5 | AY.99.2 | 0.000461 |
N | 365 | P365A | Cca | Gca | 4 | 5 | B.1 | 0.000037 |
N | 365 | P365A | CcA | GcT | 1 | 5 | B.1 | 0.000009 |
N | 365 | P365del | CCA | --- | 5 | 5 | B.1.1 | 0.000091 |
N | 365 | P365S | Cca | Tca | 5 | 5 | B.1.1.214 | 0.000277 |
N | 365 | P365P | ccA | ccG | 5 | 5 | B.1.1.519 | 0.000199 |
N | 365 | P365L | cCa | cTa | 5 | 5 | B.1.258.17 | 0.00052 |
N | 365 | P365L | cCa | cTa | 5 | 5 | B.1.265 | 0.006353 |
N | 365 | P365L | cCa | cTa | 5 | 5 | B.1.456 | 0.01634 |
N | 365 | P365S | Cca | Tca | 5 | 5 | B.1.621 | 0.000443 |
N | 365 | P365S | Cca | Tca | 5 | 5 | R.1 | 0.00045 |
N | 365 | P365C | CCA | TGC | 3 | 4 | All | 0.000001 |
N | 365 | P365F | CCA | TTT | 3 | 4 | All | 0.000001 |
N | 365 | P365del1 | ccA | cc- | 3 | 4 | All | 0.000001 |
N | 365 | P365C | CCA | TGT | 1 | 4 | All | 0 |
N | 365 | P365del1 | Cca | -ca | 1 | 4 | All | 0 |
N | 365 | P365F | CCA | TTC | 1 | 4 | All | 0 |
N | 365 | P365S | Cca | Tca | 4 | 4 | AY.113 | 0.00057 |
N | 365 | P365L | cCa | cTa | 4 | 4 | AY.114 | 0.000924 |
N | 365 | P365S | Cca | Tca | 4 | 4 | AY.121 | 0.000541 |
N | 365 | P365S | Cca | Tca | 4 | 4 | AY.23 | 0.000279 |
N | 365 | P365Q | cCa | cAa | 4 | 4 | AY.3 | 0.00004 |
N | 365 | P365Q | cCa | cAa | 4 | 4 | AY.39 | 0.000099 |
N | 365 | P365L | cCa | cTa | 4 | 4 | AY.6 | 0.000165 |
N | 365 | P365S | Cca | Tca | 4 | 4 | B.1.1.198 | 0.005874 |
N | 365 | P365S | Cca | Tca | 4 | 4 | B.1.1.273 | 0.027027 |
N | 365 | P365S | Cca | Tca | 4 | 4 | B.1.1.318 | 0.001207 |
N | 365 | P365L | cCa | cTa | 4 | 4 | B.1.1.39 | 0.002039 |
N | 365 | P365C | CCA | TGC | 3 | 4 | B.1.1.7 | 0.000003 |
N | 365 | P365F | CCA | TTT | 3 | 4 | B.1.1.7 | 0.000003 |
N | 365 | P365F | CCA | TTC | 1 | 4 | B.1.1.7 | 0.000001 |
N | 365 | P365C | CCA | TGT | 1 | 4 | B.1.1.7 | 0.000001 |
N | 365 | P365R | cCa | cGa | 4 | 4 | B.1.177 | 0.000053 |
N | 365 | P365P | ccA | ccT | 3 | 4 | B.1.177 | 0.00004 |
N | 365 | P365P | ccA | ccG | 1 | 4 | B.1.177 | 0.000013 |
N | 365 | P365L | cCa | cTa | 4 | 4 | B.1.177.20 | 0.00607 |
N | 365 | P365S | Cca | Tca | 4 | 4 | B.1.177.21 | 0.000306 |
N | 365 | P365S | Cca | Tca | 4 | 4 | B.1.177.31 | 0.045977 |
N | 365 | P365S | Cca | Tca | 4 | 4 | B.1.177.86 | 0.000734 |
N | 365 | P365S | Cca | Tca | 4 | 4 | B.1.221 | 0.000284 |
N | 365 | P365L | cCa | cTa | 4 | 4 | B.1.459 | 0.016327 |
N | 365 | P365S | Cca | Tca | 4 | 4 | B.1.466.2 | 0.001565 |
N | 365 | P365P | ccA | ccG | 4 | 4 | B.1.595 | 0.001044 |
N | 365 | P365T | Cca | Aca | 4 | 4 | B.1.617.2 | 0.000015 |
N | 365 | P365L | cCa | cTa | 4 | 4 | C.36.3 | 0.002269 |
N | 365 | P365S | Cca | Tca | 4 | 4 | D.2 | 0.0003 |
N | 365 | P365S | Cca | Tca | 4 | 4 | P.1.12 | 0.001936 |
N | 365 | P365M | CCA | ATG | 3 | 3 | All | 0.000001 |
N | 365 | P365S | Cca | Tca | 3 | 3 | AY.117 | 0.000254 |
N | 365 | P365S | Cca | Tca | 3 | 3 | AY.118 | 0.000188 |
N | 365 | P365Q | cCa | cAa | 3 | 3 | AY.119 | 0.000106 |
N | 365 | P365P | ccA | ccG | 2 | 3 | AY.120 | 0.000074 |
N | 365 | P365P | ccA | ccT | 1 | 3 | AY.120 | 0.000037 |
N | 365 | P365Q | cCa | cAa | 3 | 3 | AY.25 | 0.000018 |
N | 365 | P365P | ccA | ccT | 2 | 3 | AY.25 | 0.000012 |
N | 365 | P365P | ccA | ccG | 1 | 3 | AY.25 | 0.000006 |
N | 365 | P365Q | cCa | cAa | 3 | 3 | AY.26 | 0.000085 |
N | 365 | P365P | ccA | ccG | 2 | 3 | AY.33 | 0.000134 |
N | 365 | P365P | ccA | ccT | 1 | 3 | AY.33 | 0.000067 |
N | 365 | P365R | cCa | cGa | 3 | 3 | AY.34 | 0.000291 |
N | 365 | P365L | cCa | cTa | 3 | 3 | AY.36 | 0.000445 |
N | 365 | P365Q | cCa | cAa | 3 | 3 | AY.4.2 | 0.000065 |
N | 365 | P365S | Cca | Tca | 3 | 3 | AY.4.3 | 0.002525 |
N | 365 | P365L | cCa | cTa | 3 | 3 | AY.45 | 0.000365 |
N | 365 | P365S | Cca | Tca | 3 | 3 | AY.45 | 0.000365 |
N | 365 | P365L | cCa | cTa | 3 | 3 | AY.46 | 0.000312 |
N | 365 | P365L | cCa | cTa | 3 | 3 | AY.47 | 0.000093 |
N | 365 | P365S | Cca | Tca | 3 | 3 | AY.57 | 0.001969 |
N | 365 | P365P | ccA | ccG | 3 | 3 | AY.61 | 0.000314 |
N | 365 | P365L | cCa | cTa | 3 | 3 | AY.74 | 0.000347 |
N | 365 | P365Q | cCa | cAa | 3 | 3 | AY.75 | 0.000168 |
N | 365 | P365L | cCa | cTa | 3 | 3 | AY.86 | 0.00249 |
N | 365 | P365L | cCa | cTa | 3 | 3 | AY.99.2 | 0.000276 |
N | 365 | P365L | cCa | cTa | 3 | 3 | AZ.5 | 0.010526 |
N | 365 | P365X | CCa | TAa | 3 | 3 | B.1 | 0.000027 |
N | 365 | P365del | CCA | --- | 3 | 3 | B.1 | 0.000027 |
N | 365 | P365Q | cCa | cAa | 3 | 3 | B.1.1 | 0.000054 |
N | 365 | P365T | Cca | Aca | 2 | 3 | B.1.1 | 0.000036 |
N | 365 | P365T | CcA | AcT | 1 | 3 | B.1.1 | 0.000018 |
N | 365 | P365L | cCa | cTa | 3 | 3 | B.1.1.216 | 0.002671 |
N | 365 | P365S | Cca | Tca | 3 | 3 | B.1.1.28 | 0.000934 |
N | 365 | P365L | cCa | cTa | 3 | 3 | B.1.1.306 | 0.001315 |
N | 365 | P365L | cCa | cTa | 3 | 3 | B.1.1.317 | 0.001235 |
N | 365 | P365L | cCa | cTa | 3 | 3 | B.1.1.318 | 0.000905 |
N | 365 | P365L | cCa | cTa | 3 | 3 | B.1.1.374 | 0.007126 |
N | 365 | P365S | Cca | Tca | 3 | 3 | B.1.1.389 | 0.018182 |
N | 365 | P365S | Cca | Tca | 3 | 3 | B.1.1.39 | 0.001529 |
N | 365 | P365M | CCA | ATG | 3 | 3 | B.1.1.7 | 0.000003 |
N | 365 | P365L | cCa | cTa | 3 | 3 | B.1.110.3 | 0.002155 |
N | 365 | P365L | cCa | cTa | 3 | 3 | B.1.160.14 | 0.006356 |
N | 365 | P365L | cCa | cTa | 3 | 3 | B.1.177.15 | 0.001893 |
N | 365 | P365S | Cca | Tca | 3 | 3 | B.1.177.17 | 0.002463 |
N | 365 | P365L | cCa | cTa | 3 | 3 | B.1.177.57 | 0.000843 |
N | 365 | P365S | Cca | Tca | 3 | 3 | B.1.177.73 | 0.001699 |
N | 365 | P365P | ccA | ccC | 3 | 3 | B.1.177.81 | 0.000568 |
N | 365 | P365L | cCa | cTa | 3 | 3 | B.1.177.86 | 0.00055 |
N | 365 | P365T | Cca | Aca | 2 | 3 | B.1.2 | 0.000018 |
N | 365 | P365A | Cca | Gca | 2 | 3 | B.1.2 | 0.000018 |
N | 365 | P365A | CcA | GcC | 1 | 3 | B.1.2 | 0.000009 |
N | 365 | P365T | CcA | AcC | 1 | 3 | B.1.2 | 0.000009 |
N | 365 | P365T | CcA | AcT | 1 | 3 | B.1.221 | 0.000071 |
N | 365 | P365T | CcA | AcG | 1 | 3 | B.1.221 | 0.000071 |
N | 365 | P365A | CcA | GcG | 1 | 3 | B.1.221 | 0.000071 |
N | 365 | P365T | Cca | Aca | 1 | 3 | B.1.221 | 0.000071 |
N | 365 | P365A | Cca | Gca | 1 | 3 | B.1.221 | 0.000071 |
N | 365 | P365A | CcA | GcT | 1 | 3 | B.1.221 | 0.000071 |
N | 365 | P365L | cCa | cTa | 3 | 3 | B.1.240 | 0.000647 |
N | 365 | P365P | ccA | ccT | 3 | 3 | B.1.243 | 0.000209 |
N | 365 | P365L | cCa | cTa | 3 | 3 | B.1.258.14 | 0.002941 |
N | 365 | P365S | Cca | Tca | 3 | 3 | B.1.258.17 | 0.000312 |
N | 365 | P365L | cCa | cTa | 3 | 3 | B.1.311 | 0.000824 |
N | 365 | P365L | cCa | cTa | 3 | 3 | B.1.332 | 0.01049 |
N | 365 | P365S | Cca | Tca | 3 | 3 | B.1.36.18 | 0.001261 |
N | 365 | P365P | ccA | ccT | 3 | 3 | B.1.459 | 0.012245 |
N | 365 | P365L | cCa | cTa | 3 | 3 | B.1.495 | 0.027273 |
N | 365 | P365S | Cca | Tca | 3 | 3 | B.1.506 | 0.071429 |
N | 365 | P365R | cCa | cGa | 3 | 3 | B.1.526 | 0.000071 |
N | 365 | P365L | cCa | cTa | 3 | 3 | B.1.561 | 0.001191 |
N | 365 | P365L | cCa | cTa | 3 | 3 | B.1.596 | 0.000261 |
N | 365 | P365T | Cca | Aca | 3 | 3 | B.1.617.1 | 0.000387 |
N | 365 | P365L | cCa | cTa | 3 | 3 | B.1.623 | 0.001609 |
N | 365 | P365P | ccA | ccT | 3 | 3 | B.1.637 | 0.000219 |
N | 365 | P365S | Cca | Tca | 3 | 3 | C.37 | 0.000348 |
N | 365 | P365P | ccA | ccG | 3 | 3 | N.9 | 0.017857 |
N | 365 | P365A | Cca | Gca | 3 | 3 | P.1 | 0.000047 |
N | 365 | P365R | cCa | cGa | 1 | 3 | P.1 | 0.000016 |
N | 365 | P365R | CCa | AGa | 1 | 3 | P.1 | 0.000016 |
N | 365 | P365R | cCA | cGC | 1 | 3 | P.1 | 0.000016 |
N | 365 | P365S | Cca | Tca | 3 | 3 | P.1.14 | 0.000143 |
N | 365 | P365L | cCa | cTa | 3 | 3 | Q.4 | 0.001364 |
N | 365 | P365P | ccA | ccC | 2 | 2 | 0.111111 | |
N | 365 | P365A | Cca | Gca | 2 | 2 | 0.111111 | |
N | 365 | P365S | Cca | Tca | 2 | 2 | A.23.1 | 0.001408 |
N | 365 | P365G | CCa | GGa | 2 | 2 | All | 0 |
N | 365 | P365del2 | cCA | c-- | 1 | 2 | All | 0 |
N | 365 | P365del2 | CCa | --a | 1 | 2 | All | 0 |
N | 365 | P365P | ccA | ccG | 2 | 2 | AY.102 | 0.000053 |
N | 365 | P365Q | cCa | cAa | 2 | 2 | AY.103 | 0.000012 |
N | 365 | P365S | Cca | Tca | 2 | 2 | AY.110 | 0.000225 |
N | 365 | P365L | cCa | cTa | 2 | 2 | AY.111 | 0.000366 |
N | 365 | P365S | Cca | Tca | 2 | 2 | AY.114 | 0.000462 |
N | 365 | P365L | cCa | cTa | 2 | 2 | AY.117 | 0.000169 |
N | 365 | P365L | cCa | cTa | 2 | 2 | AY.13 | 0.000322 |
N | 365 | P365S | Cca | Tca | 2 | 2 | AY.14 | 0.000176 |
N | 365 | P365I | CCa | ATa | 1 | 2 | AY.25 | 0.000006 |
N | 365 | P365I | CCA | ATT | 1 | 2 | AY.25 | 0.000006 |
N | 365 | P365V | CCA | GTT | 1 | 2 | AY.25 | 0.000006 |
N | 365 | P365V | CCa | GTa | 1 | 2 | AY.25 | 0.000006 |
N | 365 | P365P | ccA | ccT | 2 | 2 | AY.26 | 0.000057 |
N | 365 | P365S | Cca | Tca | 2 | 2 | AY.27 | 0.000129 |
N | 365 | P365T | Cca | Aca | 2 | 2 | AY.29 | 0.000032 |
N | 365 | P365T | Cca | Aca | 2 | 2 | AY.3 | 0.00002 |
N | 365 | P365L | cCa | cTa | 2 | 2 | AY.3.1 | 0.000171 |
N | 365 | P365S | Cca | Tca | 2 | 2 | AY.3.1 | 0.000171 |
N | 365 | P365P | ccA | ccG | 1 | 2 | AY.39 | 0.000025 |
N | 365 | P365P | ccA | ccT | 1 | 2 | AY.39 | 0.000025 |
N | 365 | P365L | cCa | cTa | 2 | 2 | AY.4.2.1 | 0.000298 |
N | 365 | P365T | Cca | Aca | 2 | 2 | AY.43 | 0.000009 |
N | 365 | P365T | Cca | Aca | 2 | 2 | AY.44 | 0.000012 |
N | 365 | P365S | Cca | Tca | 2 | 2 | AY.46 | 0.000208 |
N | 365 | P365L | cCa | cTa | 2 | 2 | AY.46.2 | 0.001271 |
N | 365 | P365L | cCa | cTa | 2 | 2 | AY.48 | 0.00093 |
N | 365 | P365P | ccA | ccT | 2 | 2 | AY.53 | 0.000575 |
N | 365 | P365L | cCa | cTa | 2 | 2 | AY.54 | 0.000191 |
N | 365 | P365L | cCa | cTa | 2 | 2 | AY.63 | 0.000774 |
N | 365 | P365S | Cca | Tca | 2 | 2 | AY.7.1 | 0.000225 |
N | 365 | P365L | cCa | cTa | 2 | 2 | AY.71 | 0.00095 |
N | 365 | P365S | Cca | Tca | 2 | 2 | AY.75 | 0.000112 |
N | 365 | P365P | ccA | ccG | 2 | 2 | AY.79 | 0.002421 |
N | 365 | P365R | cCa | cGa | 2 | 2 | AY.9.1 | 0.000167 |
N | 365 | P365L | cCa | cTa | 2 | 2 | AY.9.1 | 0.000167 |
N | 365 | P365S | Cca | Tca | 2 | 2 | AY.98 | 0.000158 |
N | 365 | P365L | cCa | cTa | 2 | 2 | AY.98.1 | 0.000097 |
N | 365 | P365L | cCa | cTa | 2 | 2 | B | 0.000256 |
N | 365 | P365Y | CCA | TAC | 2 | 2 | B.1 | 0.000018 |
N | 365 | P365S | Cca | Tca | 2 | 2 | B.1.1.176 | 0.000879 |
N | 365 | P365T | Cca | Aca | 2 | 2 | B.1.1.192 | 0.004619 |
N | 365 | P365P | ccA | ccG | 2 | 2 | B.1.1.222 | 0.000408 |
N | 365 | P365L | cCa | cTa | 2 | 2 | B.1.1.282 | 0.023256 |
N | 365 | P365L | cCa | cTa | 2 | 2 | B.1.1.284 | 0.000215 |
N | 365 | P365L | cCa | cTa | 2 | 2 | B.1.1.303 | 0.005525 |
N | 365 | P365L | cCa | cTa | 2 | 2 | B.1.1.348 | 0.001592 |
N | 365 | P365S | Cca | Tca | 2 | 2 | B.1.1.348 | 0.001592 |
N | 365 | P365L | cCa | cTa | 2 | 2 | B.1.1.354 | 0.008772 |
N | 365 | P365S | Cca | Tca | 2 | 2 | B.1.1.432 | 0.002532 |
N | 365 | P365L | cCa | cTa | 2 | 2 | B.1.1.486 | 0.003155 |
N | 365 | P365G | CCa | GGa | 2 | 2 | B.1.1.7 | 0.000002 |
N | 365 | P365L | cCa | cTa | 2 | 2 | B.1.116 | 0.023256 |
N | 365 | P365P | ccA | ccG | 1 | 2 | B.1.160 | 0.000031 |
N | 365 | P365P | ccA | ccT | 1 | 2 | B.1.160 | 0.000031 |
N | 365 | P365S | Cca | Tca | 2 | 2 | B.1.160.10 | 0.016129 |
N | 365 | P365L | CCa | TTa | 2 | 2 | B.1.177.12 | 0.000303 |
N | 365 | P365S | Cca | Tca | 2 | 2 | B.1.177.3 | 0.015267 |
N | 365 | P365L | CCa | TTa | 2 | 2 | B.1.177.42 | 0.001789 |
N | 365 | P365S | Cca | Tca | 2 | 2 | B.1.177.45 | 0.000762 |
N | 365 | P365S | Cca | Tca | 2 | 2 | B.1.177.5 | 0.002484 |
N | 365 | P365S | Cca | Tca | 2 | 2 | B.1.177.52 | 0.003515 |
N | 365 | P365S | Cca | Tca | 2 | 2 | B.1.177.65 | 0.001331 |
N | 365 | P365L | cCa | cTa | 2 | 2 | B.1.179 | 0.007519 |
N | 365 | P365L | cCa | cTa | 2 | 2 | B.1.199 | 0.008264 |
N | 365 | P365L | cCa | cTa | 2 | 2 | B.1.206 | 0.001631 |
N | 365 | P365L | cCa | cTa | 2 | 2 | B.1.214.2 | 0.001199 |
N | 365 | P365P | ccA | ccG | 2 | 2 | B.1.218 | 0.010309 |
N | 365 | P365K | CCa | AAa | 1 | 2 | B.1.221 | 0.000071 |
N | 365 | P365Q | cCa | cAa | 1 | 2 | B.1.221 | 0.000071 |
N | 365 | P365K | CCA | AAG | 1 | 2 | B.1.221 | 0.000071 |
N | 365 | P365E | CCa | GAa | 1 | 2 | B.1.221 | 0.000071 |
N | 365 | P365Q | cCA | cAG | 1 | 2 | B.1.221 | 0.000071 |
N | 365 | P365P | ccA | ccG | 1 | 2 | B.1.221 | 0.000071 |
N | 365 | P365E | CCA | GAG | 1 | 2 | B.1.221 | 0.000071 |
N | 365 | P365P | ccA | ccT | 1 | 2 | B.1.221 | 0.000071 |
N | 365 | P365S | Cca | Tca | 2 | 2 | B.1.239 | 0.002442 |
N | 365 | P365P | ccA | ccT | 2 | 2 | B.1.260 | 0.006689 |
N | 365 | P365P | ccA | ccT | 2 | 2 | B.1.311 | 0.000549 |
N | 365 | P365T | Cca | Aca | 2 | 2 | B.1.351 | 0.000059 |
N | 365 | P365L | cCa | cTa | 2 | 2 | B.1.36.29 | 0.001035 |
N | 365 | P365S | Cca | Tca | 2 | 2 | B.1.36.39 | 0.004435 |
N | 365 | P365L | cCa | cTa | 2 | 2 | B.1.36.7 | 0.008 |
N | 365 | P365L | cCa | cTa | 2 | 2 | B.1.36.8 | 0.002 |
N | 365 | P365S | Cca | Tca | 2 | 2 | B.1.39 | 0.007812 |
N | 365 | P365L | cCa | cTa | 2 | 2 | B.1.400 | 0.000858 |
N | 365 | P365T | CcA | AcT | 1 | 2 | B.1.417 | 0.028571 |
N | 365 | P365T | Cca | Aca | 1 | 2 | B.1.417 | 0.028571 |
N | 365 | P365del | CCA | --- | 2 | 2 | B.1.427 | 0.000101 |
N | 365 | P365del | CCA | --- | 2 | 2 | B.1.438.1 | 0.000215 |
N | 365 | P365L | cCa | cTa | 2 | 2 | B.1.465 | 0.007605 |
N | 365 | P365L | cCa | cTa | 2 | 2 | B.1.466.2 | 0.000782 |
N | 365 | P365S | Cca | Tca | 2 | 2 | B.1.469 | 0.00722 |
N | 365 | P365L | cCa | cTa | 2 | 2 | B.1.524 | 0.002813 |
N | 365 | P365P | ccA | ccG | 1 | 2 | B.1.526 | 0.000024 |
N | 365 | P365P | ccA | ccT | 1 | 2 | B.1.526 | 0.000024 |
N | 365 | P365L | cCa | cTa | 2 | 2 | B.1.570 | 0.005882 |
N | 365 | P365P | ccA | ccG | 2 | 2 | B.1.588 | 0.00182 |
N | 365 | P365S | Cca | Tca | 2 | 2 | B.1.595 | 0.000522 |
N | 365 | P365S | Cca | Tca | 2 | 2 | B.1.596 | 0.000174 |
N | 365 | P365P | ccA | ccT | 2 | 2 | B.1.596 | 0.000174 |
N | 365 | P365S | Cca | Tca | 2 | 2 | B.1.617.1 | 0.000258 |
N | 365 | P365Q | cCa | cAa | 2 | 2 | B.1.617.2 | 0.000008 |
N | 365 | P365S | Cca | Tca | 2 | 2 | B.1.628 | 0.000705 |
N | 365 | P365L | cCa | cTa | 2 | 2 | B.1.638 | 0.105263 |
N | 365 | P365I | CCA | ATT | 1 | 2 | C.37 | 0.000116 |
N | 365 | P365I | CCa | ATa | 1 | 2 | C.37 | 0.000116 |
N | 365 | P365T | Cca | Aca | 1 | 2 | C.37 | 0.000116 |
N | 365 | P365T | CcA | AcT | 1 | 2 | C.37 | 0.000116 |
N | 365 | P365del | CCA | --- | 2 | 2 | P.1 | 0.000032 |
N | 365 | P365T | CcA | AcC | 1 | 2 | P.1 | 0.000016 |
N | 365 | P365T | Cca | Aca | 1 | 2 | P.1 | 0.000016 |
N | 365 | P365L | cCa | cTa | 2 | 2 | P.1.12 | 0.000968 |
N | 365 | P365S | Cca | Tca | 2 | 2 | P.1.16 | 0.000748 |
N | 365 | P365L | cCa | cTa | 2 | 2 | P.1.17 | 0.000324 |
N | 365 | P365S | Cca | Tca | 2 | 2 | P.2 | 0.000373 |
N | 365 | P365S | Cca | Tca | 2 | 2 | Q.8 | 0.00033 |
N | 365 | P365L | cCa | cTa | 2 | 2 | Q.8 | 0.00033 |
N | 365 | P365L | cCa | cTa | 2 | 2 | R.1 | 0.00018 |
N | 365 | P365S | Cca | Tca | 1 | 1 | A | 0.000387 |
N | 365 | P365S | Cca | Tca | 1 | 1 | A.1 | 0.000282 |
N | 365 | P365R | cCa | cGa | 1 | 1 | A.1 | 0.000282 |
N | 365 | P365P | ccA | ccT | 1 | 1 | A.1 | 0.000282 |
N | 365 | P365S | Cca | Tca | 1 | 1 | A.2 | 0.000662 |
N | 365 | P365T | Cca | Aca | 1 | 1 | A.2.5 | 0.000499 |
N | 365 | P365L | cCa | cTa | 1 | 1 | A.27 | 0.001656 |
N | 365 | P365L | cCa | cTa | 1 | 1 | AD.2 | 0.000219 |
N | 365 | P365S | Cca | Tca | 1 | 1 | AD.2 | 0.000219 |
N | 365 | P365L | cCa | cTa | 1 | 1 | AE.8 | 0.000489 |
N | 365 | P365W | CCA | TGG | 1 | 1 | All | 0 |
N | 365 | P365S | Cca | Tca | 1 | 1 | AW.1 | 0.003049 |
N | 365 | P365L | cCa | cTa | 1 | 1 | AY.1 | 0.000396 |
N | 365 | P365Q | cCa | cAa | 1 | 1 | AY.10 | 0.00053 |
N | 365 | P365Q | cCa | cAa | 1 | 1 | AY.100 | 0.000046 |
N | 365 | P365V | CCa | GTa | 1 | 1 | AY.103 | 0.000006 |
N | 365 | P365P | ccA | ccT | 1 | 1 | AY.103 | 0.000006 |
N | 365 | P365A | Cca | Gca | 1 | 1 | AY.103 | 0.000006 |
N | 365 | P365T | Cca | Aca | 1 | 1 | AY.103 | 0.000006 |
N | 365 | P365L | cCa | cTa | 1 | 1 | AY.106 | 0.000335 |
N | 365 | P365P | ccA | ccT | 1 | 1 | AY.106 | 0.000335 |
N | 365 | P365S | Cca | Tca | 1 | 1 | AY.106 | 0.000335 |
N | 365 | P365S | Cca | Tca | 1 | 1 | AY.108 | 0.001103 |
N | 365 | P365del | CCA | --- | 1 | 1 | AY.114 | 0.000231 |
N | 365 | P365L | cCa | cTa | 1 | 1 | AY.116 | 0.000287 |
N | 365 | P365S | Cca | Tca | 1 | 1 | AY.116 | 0.000287 |
N | 365 | P365P | ccA | ccG | 1 | 1 | AY.119 | 0.000035 |
N | 365 | P365L | cCa | cTa | 1 | 1 | AY.12 | 0.000316 |
N | 365 | P365L | cCa | cTa | 1 | 1 | AY.121 | 0.000135 |
N | 365 | P365L | cCa | cTa | 1 | 1 | AY.14 | 0.000088 |
N | 365 | P365R | cCa | cGa | 1 | 1 | AY.14 | 0.000088 |
N | 365 | P365S | Cca | Tca | 1 | 1 | AY.16 | 0.00038 |
N | 365 | P365Q | cCa | cAa | 1 | 1 | AY.20 | 0.000039 |
N | 365 | P365A | Cca | Gca | 1 | 1 | AY.20 | 0.000039 |
N | 365 | P365P | ccA | ccT | 1 | 1 | AY.23 | 0.00007 |
N | 365 | P365L | cCa | cTa | 1 | 1 | AY.23.1 | 0.000417 |
N | 365 | P365L | cCa | cTa | 1 | 1 | AY.24 | 0.000431 |
N | 365 | P365Q | cCa | cAa | 1 | 1 | AY.24 | 0.000431 |
N | 365 | P365E | CCa | GAa | 1 | 1 | AY.25 | 0.000006 |
N | 365 | P365D | CCA | GAT | 1 | 1 | AY.25 | 0.000006 |
N | 365 | P365N | CCA | AAT | 1 | 1 | AY.25 | 0.000006 |
N | 365 | P365K | CCa | AAa | 1 | 1 | AY.25 | 0.000006 |
N | 365 | P365A | Cca | Gca | 1 | 1 | AY.26 | 0.000028 |
N | 365 | P365R | cCa | cGa | 1 | 1 | AY.26 | 0.000028 |
N | 365 | P365del | CCA | --- | 1 | 1 | AY.26 | 0.000028 |
N | 365 | P365L | cCa | cTa | 1 | 1 | AY.27 | 0.000065 |
N | 365 | P365P | ccA | ccG | 1 | 1 | AY.29 | 0.000016 |
N | 365 | P365del1 | ccA | cc- | 1 | 1 | AY.3 | 0.00001 |
N | 365 | P365P | ccA | ccG | 1 | 1 | AY.3.1 | 0.000085 |
N | 365 | P365L | cCa | cTa | 1 | 1 | AY.30 | 0.000396 |
N | 365 | P365P | ccA | ccC | 1 | 1 | AY.30 | 0.000396 |
N | 365 | P365S | Cca | Tca | 1 | 1 | AY.33 | 0.000067 |
N | 365 | P365L | cCa | cTa | 1 | 1 | AY.34 | 0.000097 |
N | 365 | P365S | Cca | Tca | 1 | 1 | AY.34 | 0.000097 |
N | 365 | P365S | Cca | Tca | 1 | 1 | AY.34.1 | 0.00051 |
N | 365 | P365L | cCa | cTa | 1 | 1 | AY.35 | 0.000233 |
N | 365 | P365S | Cca | Tca | 1 | 1 | AY.35 | 0.000233 |
N | 365 | P365L | cCa | cTa | 1 | 1 | AY.38 | 0.000499 |
N | 365 | P365T | Cca | Aca | 1 | 1 | AY.39.1 | 0.00004 |
N | 365 | P365P | ccA | ccT | 1 | 1 | AY.39.1 | 0.00004 |
N | 365 | P365R | cCa | cGa | 1 | 1 | AY.4 | 0.000002 |
N | 365 | P365T | Cca | Aca | 1 | 1 | AY.4 | 0.000002 |
N | 365 | P365A | Cca | Gca | 1 | 1 | AY.4 | 0.000002 |
N | 365 | P365P | ccA | ccT | 1 | 1 | AY.4.2 | 0.000022 |
N | 365 | P365S | Cca | Tca | 1 | 1 | AY.4.4 | 0.000409 |
N | 365 | P365L | cCa | cTa | 1 | 1 | AY.4.5 | 0.000107 |
N | 365 | P365S | Cca | Tca | 1 | 1 | AY.4.5 | 0.000107 |
N | 365 | P365Q | cCa | cAa | 1 | 1 | AY.43 | 0.000004 |
N | 365 | P365del | CCA | --- | 1 | 1 | AY.43 | 0.000004 |
N | 365 | P365A | Cca | Gca | 1 | 1 | AY.44 | 0.000006 |
N | 365 | P365L | cCa | cTa | 1 | 1 | AY.46.1 | 0.001027 |
N | 365 | P365Q | cCa | cAa | 1 | 1 | AY.46.2 | 0.000635 |
N | 365 | P365P | ccA | ccT | 1 | 1 | AY.46.4 | 0.000165 |
N | 365 | P365L | cCa | cTa | 1 | 1 | AY.46.6 | 0.000072 |
N | 365 | P365Q | cCa | cAa | 1 | 1 | AY.46.6 | 0.000072 |
N | 365 | P365R | cCa | cGa | 1 | 1 | AY.47 | 0.000031 |
N | 365 | P365S | Cca | Tca | 1 | 1 | AY.47 | 0.000031 |
N | 365 | P365S | Cca | Tca | 1 | 1 | AY.49 | 0.003195 |
N | 365 | P365L | cCa | cTa | 1 | 1 | AY.49 | 0.003195 |
N | 365 | P365S | Cca | Tca | 1 | 1 | AY.5.4 | 0.000277 |
N | 365 | P365L | cCa | cTa | 1 | 1 | AY.5.4 | 0.000277 |
N | 365 | P365S | Cca | Tca | 1 | 1 | AY.51 | 0.000909 |
N | 365 | P365K | CCa | AAa | 1 | 1 | AY.53 | 0.000288 |
N | 365 | P365S | Cca | Tca | 1 | 1 | AY.55 | 0.000917 |
N | 365 | P365L | cCa | cTa | 1 | 1 | AY.59 | 0.00053 |
N | 365 | P365S | Cca | Tca | 1 | 1 | AY.59 | 0.00053 |
N | 365 | P365S | Cca | Tca | 1 | 1 | AY.6 | 0.000041 |
N | 365 | P365S | Cca | Tca | 1 | 1 | AY.61 | 0.000105 |
N | 365 | P365S | Cca | Tca | 1 | 1 | AY.62 | 0.000436 |
N | 365 | P365del | CCA | --- | 1 | 1 | AY.67 | 0.000464 |
N | 365 | P365L | cCa | cTa | 1 | 1 | AY.7 | 0.000196 |
N | 365 | P365S | Cca | Tca | 1 | 1 | AY.7 | 0.000196 |
N | 365 | P365S | Cca | Tca | 1 | 1 | AY.70 | 0.000209 |
N | 365 | P365S | Cca | Tca | 1 | 1 | AY.71 | 0.000475 |
N | 365 | P365S | Cca | Tca | 1 | 1 | AY.72 | 0.001361 |
N | 365 | P365S | Cca | Tca | 1 | 1 | AY.74 | 0.000116 |
N | 365 | P365P | ccA | ccG | 1 | 1 | AY.75 | 0.000056 |
N | 365 | P365L | cCa | cTa | 1 | 1 | AY.75.1 | 0.00018 |
N | 365 | P365del | CCA | --- | 1 | 1 | AY.78 | 0.001541 |
N | 365 | P365L | cCa | cTa | 1 | 1 | AY.78 | 0.001541 |
N | 365 | P365L | cCa | cTa | 1 | 1 | AY.84 | 0.000437 |
N | 365 | P365S | Cca | Tca | 1 | 1 | AY.9.1 | 0.000084 |
N | 365 | P365Q | cCa | cAa | 1 | 1 | AY.9.2 | 0.000037 |
N | 365 | P365P | ccA | ccC | 1 | 1 | AY.9.2 | 0.000037 |
N | 365 | P365L | cCa | cTa | 1 | 1 | AY.91 | 0.00073 |
N | 365 | P365S | Cca | Tca | 1 | 1 | AY.91 | 0.00073 |
N | 365 | P365L | cCa | cTa | 1 | 1 | AY.92 | 0.000287 |
N | 365 | P365S | Cca | Tca | 1 | 1 | AY.96 | 0.002075 |
N | 365 | P365S | Cca | Tca | 1 | 1 | AY.99 | 0.001049 |
N | 365 | P365D | CCA | GAT | 1 | 1 | B.1 | 0.000009 |
N | 365 | P365E | CCa | GAa | 1 | 1 | B.1 | 0.000009 |
N | 365 | P365del2 | cCA | c-- | 1 | 1 | B.1 | 0.000009 |
N | 365 | P365I | CCa | ATa | 1 | 1 | B.1 | 0.000009 |
N | 365 | P365A | Cca | Gca | 1 | 1 | B.1.1 | 0.000018 |
N | 365 | P365K | CCa | AAa | 1 | 1 | B.1.1 | 0.000018 |
N | 365 | P365R | cCa | cGa | 1 | 1 | B.1.1 | 0.000018 |
N | 365 | P365N | CCA | AAT | 1 | 1 | B.1.1 | 0.000018 |
N | 365 | P365H | cCA | cAT | 1 | 1 | B.1.1 | 0.000018 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.1.125 | 0.010204 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.1.137 | 0.0125 |
N | 365 | P365del | CCA | --- | 1 | 1 | B.1.1.139 | 0.022727 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.1.153 | 0.001095 |
N | 365 | P365T | Cca | Aca | 1 | 1 | B.1.1.157 | 0.000913 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.1.189 | 0.001513 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.1.220 | 0.001859 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.1.225 | 0.007194 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.1.244 | 0.015385 |
N | 365 | P365P | ccA | ccT | 1 | 1 | B.1.1.25 | 0.000569 |
N | 365 | P365P | ccA | ccT | 1 | 1 | B.1.1.253 | 0.002506 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.1.254 | 0.011236 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.1.263 | 0.001558 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.1.265 | 0.003155 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.1.269 | 0.001353 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.1.27 | 0.00565 |
N | 365 | P365T | Cca | Aca | 1 | 1 | B.1.1.28 | 0.000311 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.1.294 | 0.001266 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.1.299 | 0.012195 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.1.301 | 0.001179 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.1.302 | 0.002075 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.1.304 | 0.002809 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.1.315 | 0.008475 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.1.33 | 0.000421 |
N | 365 | P365Q | cCa | cAa | 1 | 1 | B.1.1.33 | 0.000421 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.1.369 | 0.000446 |
N | 365 | P365del | CCA | --- | 1 | 1 | B.1.1.37 | 0.000193 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.1.37 | 0.000193 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.1.385 | 0.004464 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.1.398 | 0.003226 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.1.416 | 0.000905 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.1.46 | 0.004367 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.1.482 | 0.023256 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.1.513 | 0.012346 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.1.521 | 0.005348 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.1.523 | 0.001563 |
N | 365 | P365W | CCA | TGG | 1 | 1 | B.1.1.7 | 0.000001 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.1.70 | 0.000341 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.1.70 | 0.000341 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.1.83 | 0.00271 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.104 | 0.00369 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.147 | 0.000756 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.157 | 0.002985 |
N | 365 | P365Q | cCa | cAa | 1 | 1 | B.1.160 | 0.000031 |
N | 365 | P365K | CCa | AAa | 1 | 1 | B.1.160 | 0.000031 |
N | 365 | P365T | Cca | Aca | 1 | 1 | B.1.160 | 0.000031 |
N | 365 | P365del | CCA | --- | 1 | 1 | B.1.162 | 0.005025 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.170 | 0.00431 |
N | 365 | P365Q | cCa | cAa | 1 | 1 | B.1.177 | 0.000013 |
N | 365 | P365K | CCa | AAa | 1 | 1 | B.1.177 | 0.000013 |
N | 365 | P365T | Cca | Aca | 1 | 1 | B.1.177 | 0.000013 |
N | 365 | P365X | CCa | TAa | 1 | 1 | B.1.177 | 0.000013 |
N | 365 | P365del2 | CCa | --a | 1 | 1 | B.1.177 | 0.000013 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.177.16 | 0.000664 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.177.17 | 0.000821 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.177.23 | 0.003236 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.177.4 | 0.000211 |
N | 365 | P365P | ccA | ccG | 1 | 1 | B.1.177.4 | 0.000211 |
N | 365 | P365del1 | ccA | cc- | 1 | 1 | B.1.177.45 | 0.000381 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.177.5 | 0.001242 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.177.50 | 0.004695 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.177.6 | 0.000977 |
N | 365 | P365del | CCA | --- | 1 | 1 | B.1.177.63 | 0.002703 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.177.65 | 0.000665 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.177.72 | 0.00339 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.177.73 | 0.000566 |
N | 365 | P365T | Cca | Aca | 1 | 1 | B.1.177.77 | 0.000726 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.177.81 | 0.000189 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.177.84 | 0.006667 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.179 | 0.003759 |
N | 365 | P365D | CCA | GAC | 1 | 1 | B.1.2 | 0.000009 |
N | 365 | P365H | cCA | cAC | 1 | 1 | B.1.2 | 0.000009 |
N | 365 | P365N | CCA | AAC | 1 | 1 | B.1.2 | 0.000009 |
N | 365 | P365K | CCa | AAa | 1 | 1 | B.1.2 | 0.000009 |
N | 365 | P365Q | cCa | cAa | 1 | 1 | B.1.2 | 0.000009 |
N | 365 | P365E | CCa | GAa | 1 | 1 | B.1.2 | 0.000009 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.206 | 0.000816 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.210 | 0.002132 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.214.2 | 0.0006 |
N | 365 | P365del | CCA | --- | 1 | 1 | B.1.221 | 0.000071 |
N | 365 | P365N | CCA | AAT | 1 | 1 | B.1.221 | 0.000071 |
N | 365 | P365H | cCA | cAT | 1 | 1 | B.1.221 | 0.000071 |
N | 365 | P365D | CCA | GAT | 1 | 1 | B.1.221 | 0.000071 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.221.3 | 0.000833 |
N | 365 | P365P | ccA | ccT | 1 | 1 | B.1.222 | 0.001692 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.222 | 0.001692 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.234 | 0.000132 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.240 | 0.000216 |
N | 365 | P365T | Cca | Aca | 1 | 1 | B.1.243 | 0.00007 |
N | 365 | P365A | Cca | Gca | 1 | 1 | B.1.243 | 0.00007 |
N | 365 | P365Q | cCa | cAa | 1 | 1 | B.1.258 | 0.000067 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.258.11 | 0.000396 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.258.21 | 0.007752 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.258.4 | 0.003448 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.260 | 0.003344 |
N | 365 | P365P | ccA | ccT | 1 | 1 | B.1.265 | 0.001271 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.298 | 0.002114 |
N | 365 | P365P | ccA | ccG | 1 | 1 | B.1.306 | 0.005714 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.338 | 0.008621 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.349 | 0.000715 |
N | 365 | P365Q | cCa | cAa | 1 | 1 | B.1.349 | 0.000715 |
N | 365 | P365R | cCa | cGa | 1 | 1 | B.1.351 | 0.00003 |
N | 365 | P365Q | cCa | cAa | 1 | 1 | B.1.351.2 | 0.000303 |
N | 365 | P365R | cCa | cGa | 1 | 1 | B.1.351.2 | 0.000303 |
N | 365 | P365T | Cca | Aca | 1 | 1 | B.1.351.3 | 0.000876 |
N | 365 | P365K | CCa | AAa | 1 | 1 | B.1.36 | 0.000146 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.36.1 | 0.00114 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.36.18 | 0.00042 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.36.22 | 0.001208 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.36.22 | 0.001208 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.36.35 | 0.002604 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.36.36 | 0.000602 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.36.37 | 0.002778 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.36.38 | 0.001642 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.36.8 | 0.001 |
N | 365 | P365del1 | Cca | -ca | 1 | 1 | B.1.36.8 | 0.001 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.360 | 0.012658 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.362 | 0.001541 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.367 | 0.000792 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.371 | 0.001122 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.371 | 0.001122 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.396 | 0.000706 |
N | 365 | P365del | CCA | --- | 1 | 1 | B.1.415 | 0.014286 |
N | 365 | P365Q | cCa | cAa | 1 | 1 | B.1.417 | 0.028571 |
N | 365 | P365P | ccA | ccT | 1 | 1 | B.1.417 | 0.028571 |
N | 365 | P365N | CCA | AAT | 1 | 1 | B.1.417 | 0.028571 |
N | 365 | P365H | cCA | cAT | 1 | 1 | B.1.417 | 0.028571 |
N | 365 | P365K | CCa | AAa | 1 | 1 | B.1.417 | 0.028571 |
N | 365 | P365Q | cCa | cAa | 1 | 1 | B.1.429 | 0.000024 |
N | 365 | P365T | Cca | Aca | 1 | 1 | B.1.437 | 0.020833 |
N | 365 | P365K | CCa | AAa | 1 | 1 | B.1.437 | 0.020833 |
N | 365 | P365Q | cCa | cAa | 1 | 1 | B.1.437 | 0.020833 |
N | 365 | P365P | ccA | ccT | 1 | 1 | B.1.462 | 0.007246 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.462 | 0.007246 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.469 | 0.00361 |
N | 365 | P365R | cCa | cGa | 1 | 1 | B.1.470 | 0.001404 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.471 | 0.002732 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.478 | 0.011765 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.497 | 0.000315 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.509 | 0.000866 |
N | 365 | P365P | ccA | ccT | 1 | 1 | B.1.525 | 0.000113 |
N | 365 | P365del | CCA | --- | 1 | 1 | B.1.526 | 0.000024 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.540 | 0.009709 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.561 | 0.000397 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.565 | 0.00081 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.575 | 0.000303 |
N | 365 | P365Q | cCa | cAa | 1 | 1 | B.1.575.1 | 0.002439 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.576 | 0.000907 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.577 | 0.000687 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.577 | 0.000687 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.585 | 0.027778 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.593 | 0.01087 |
N | 365 | P365A | Cca | Gca | 1 | 1 | B.1.596 | 0.000087 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.597 | 0.00463 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.606 | 0.006024 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.609 | 0.000479 |
N | 365 | P365R | cCa | cGa | 1 | 1 | B.1.609 | 0.000479 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.617.3 | 0.002985 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.619 | 0.000871 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.619.1 | 0.000641 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.621.1 | 0.000506 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.621.1 | 0.000506 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.623 | 0.000536 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.627 | 0.00202 |
N | 365 | P365del | CCA | --- | 1 | 1 | B.1.630 | 0.005236 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.1.636 | 0.006711 |
N | 365 | P365Q | cCa | cAa | 1 | 1 | B.1.9 | 0.006173 |
N | 365 | P365L | cCa | cTa | 1 | 1 | B.1.9.5 | 0.005682 |
N | 365 | P365R | cCa | cGa | 1 | 1 | B.55 | 0.00295 |
N | 365 | P365S | Cca | Tca | 1 | 1 | B.55 | 0.00295 |
N | 365 | P365X | CCa | TGa | 1 | 1 | B.55 | 0.00295 |
N | 365 | P365L | cCa | cTa | 1 | 1 | C.1.2 | 0.004255 |
N | 365 | P365L | cCa | cTa | 1 | 1 | C.35 | 0.000774 |
N | 365 | P365S | Cca | Tca | 1 | 1 | C.35 | 0.000774 |
N | 365 | P365L | cCa | cTa | 1 | 1 | C.36 | 0.000911 |
N | 365 | P365A | Cca | Gca | 1 | 1 | C.36.3 | 0.000567 |
N | 365 | P365P | ccA | ccT | 1 | 1 | C.37 | 0.000116 |
N | 365 | P365del1 | ccA | cc- | 1 | 1 | C.37 | 0.000116 |
N | 365 | P365P | ccA | ccG | 1 | 1 | D.2 | 0.000075 |
N | 365 | P365L | cCa | cTa | 1 | 1 | D.3 | 0.005917 |
N | 365 | P365S | Cca | Tca | 1 | 1 | N.5 | 0.001767 |
N | 365 | P365S | Cca | Tca | 1 | 1 | N.9 | 0.005952 |
N | 365 | P365N | CCA | AAC | 1 | 1 | P.1 | 0.000016 |
N | 365 | P365K | CCa | AAa | 1 | 1 | P.1 | 0.000016 |
N | 365 | P365H | cCA | cAC | 1 | 1 | P.1 | 0.000016 |
N | 365 | P365Q | cCa | cAa | 1 | 1 | P.1 | 0.000016 |
N | 365 | P365P | ccA | ccG | 1 | 1 | P.1.15 | 0.000232 |
N | 365 | P365S | Cca | Tca | 1 | 1 | P.1.4 | 0.000977 |
N | 365 | P365S | Cca | Tca | 1 | 1 | P.1.9 | 0.004808 |
N | 365 | P365S | Cca | Tca | 1 | 1 | P.3 | 0.001595 |
N | 365 | P365L | cCa | cTa | 1 | 1 | Q.3 | 0.000145 |
N | 365 | P365S | Cca | Tca | 1 | 1 | W.1 | 0.008696 |
N | 365 | P365S | Cca | Tca | 1 | 1 | W.3 | 0.005263 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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