CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 364 | P364L | nonsyn | cCa | cTa | 4426 | 4416 | 0.997741 | 29363-29365 | |
N | 364 | P364L | nonsyn | CCa | TTa | 4426 | 5 | 0.00112969 | 29363-29365 | |
N | 364 | P364L | nonsyn | cCA | cTC | 4426 | 4 | 0.000903751 | 29363-29365 | |
N | 364 | P364L | nonsyn | cCA | cTG | 4426 | 1 | 0.000225938 | 29363-29365 | |
N | 364 | P364S | nonsyn | Cca | Tca | 2776 | 2757 | 0.993156 | 29363-29365 | |
N | 364 | P364S | nonsyn | CcA | TcC | 2776 | 8 | 0.00288184 | 29363-29365 | |
N | 364 | P364S | nonsyn | CCA | AGC | 2776 | 5 | 0.00180115 | 29363-29365 | |
N | 364 | P364S | nonsyn | CcA | TcG | 2776 | 3 | 0.00108069 | 29363-29365 | |
N | 364 | P364S | nonsyn | CCA | AGT | 2776 | 3 | 0.00108069 | 29363-29365 | |
N | 364 | P364T | nonsyn | Cca | Aca | 551 | 524 | 0.950998 | 29363-29365 | |
N | 364 | P364T | nonsyn | CcA | AcC | 551 | 14 | 0.0254083 | 29363-29365 | |
N | 364 | P364T | nonsyn | CcA | AcG | 551 | 9 | 0.0163339 | 29363-29365 | |
N | 364 | P364T | nonsyn | CcA | AcT | 551 | 4 | 0.00725953 | 29363-29365 | |
N | 364 | P364P | syn | ccA | ccG | 189 | 90 | 0.47619 | 29363-29365 | |
N | 364 | P364P | syn | ccA | ccT | 189 | 71 | 0.375661 | 29363-29365 | |
N | 364 | P364P | syn | ccA | ccC | 189 | 28 | 0.148148 | 29363-29365 | |
N | 364 | P364Q | nonsyn | cCa | cAa | 174 | 159 | 0.913793 | 29363-29365 | |
N | 364 | P364Q | nonsyn | cCA | cAG | 174 | 15 | 0.0862069 | 29363-29365 | |
N | 364 | P364K | nonsyn | CCa | AAa | 84 | 65 | 0.77381 | 29363-29365 | |
N | 364 | P364K | nonsyn | CCA | AAG | 84 | 19 | 0.22619 | 29363-29365 | |
N | 364 | P364R | nonsyn | cCa | cGa | 75 | 33 | 0.44 | 29363-29365 | |
N | 364 | P364R | nonsyn | CCa | AGa | 75 | 22 | 0.293333 | 29363-29365 | |
N | 364 | P364R | nonsyn | CCA | AGG | 75 | 9 | 0.12 | 29363-29365 | |
N | 364 | P364R | nonsyn | cCA | cGG | 75 | 5 | 0.0666667 | 29363-29365 | |
N | 364 | P364R | nonsyn | cCA | cGT | 75 | 3 | 0.04 | 29363-29365 | |
N | 364 | P364R | nonsyn | cCA | cGC | 75 | 3 | 0.04 | 29363-29365 | |
N | 364 | P364A | nonsyn | Cca | Gca | 61 | 53 | 0.868852 | 29363-29365 | |
N | 364 | P364A | nonsyn | CcA | GcC | 61 | 3 | 0.0491803 | 29363-29365 | |
N | 364 | P364A | nonsyn | CcA | GcT | 61 | 3 | 0.0491803 | 29363-29365 | |
N | 364 | P364A | nonsyn | CcA | GcG | 61 | 2 | 0.0327869 | 29363-29365 | |
N | 364 | P364del | del | CCA | --- | 39 | 39 | 1 | 29363-29365 | |
N | 364 | P364X | nonsyn | CCa | TAa | 27 | 16 | 0.592593 | 29363-29365 | |
N | 364 | P364X | nonsyn | CCa | TGa | 27 | 6 | 0.222222 | 29363-29365 | |
N | 364 | P364X | nonsyn | CCA | TAG | 27 | 5 | 0.185185 | 29363-29365 | |
N | 364 | P364N | nonsyn | CCA | AAC | 25 | 19 | 0.76 | 29363-29365 | |
N | 364 | P364N | nonsyn | CCA | AAT | 25 | 6 | 0.24 | 29363-29365 | |
N | 364 | P364H | nonsyn | cCA | cAC | 22 | 18 | 0.818182 | 29363-29365 | |
N | 364 | P364H | nonsyn | cCA | cAT | 22 | 4 | 0.181818 | 29363-29365 | |
N | 364 | P364E | nonsyn | CCa | GAa | 14 | 12 | 0.857143 | 29363-29365 | |
N | 364 | P364E | nonsyn | CCA | GAG | 14 | 2 | 0.142857 | 29363-29365 | |
N | 364 | P364I | nonsyn | CCa | ATa | 8 | 4 | 0.5 | 29363-29365 | |
N | 364 | P364I | nonsyn | CCA | ATC | 8 | 4 | 0.5 | 29363-29365 | |
N | 364 | P364Y | nonsyn | CCA | TAC | 7 | 7 | 1 | 29363-29365 | |
N | 364 | P364D | nonsyn | CCA | GAC | 6 | 5 | 0.833333 | 29363-29365 | |
N | 364 | P364G | nonsyn | CCa | GGa | 6 | 4 | 0.666667 | 29363-29365 | |
N | 364 | P364G | nonsyn | CCA | GGC | 6 | 2 | 0.333333 | 29363-29365 | |
N | 364 | P364D | nonsyn | CCA | GAT | 6 | 1 | 0.166667 | 29363-29365 | |
N | 364 | P364del1 | del | ccA | cc- | 3 | 3 | 1 | 29363-29365 | |
N | 364 | P364V | nonsyn | CCA | GTC | 3 | 1 | 0.333333 | 29363-29365 | |
N | 364 | P364V | nonsyn | CCA | GTG | 3 | 1 | 0.333333 | 29363-29365 | |
N | 364 | P364V | nonsyn | CCa | GTa | 3 | 1 | 0.333333 | 29363-29365 | |
N | 364 | P364W | nonsyn | CCA | TGG | 2 | 2 | 1 | 29363-29365 | |
N | 364 | P364F | nonsyn | CCA | TTC | 2 | 2 | 1 | 29363-29365 | |
N | 364 | P364del2 | del | cCA | c-- | 1 | 1 | 1 | 29363-29365 | |
N | 364 | P364M | nonsyn | CCA | ATG | 1 | 1 | 1 | 29363-29365 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 364 | P364L | cCa | cTa | 4416 | 4426 | All | 0.000845 |
N | 364 | P364L | CCa | TTa | 5 | 4426 | All | 0.000001 |
N | 364 | P364L | cCA | cTC | 4 | 4426 | All | 0.000001 |
N | 364 | P364L | cCA | cTG | 1 | 4426 | All | 0 |
N | 364 | P364S | Cca | Tca | 2757 | 2776 | All | 0.000527 |
N | 364 | P364S | CcA | TcC | 8 | 2776 | All | 0.000002 |
N | 364 | P364S | CCA | AGC | 5 | 2776 | All | 0.000001 |
N | 364 | P364S | CCA | AGT | 3 | 2776 | All | 0.000001 |
N | 364 | P364S | CcA | TcG | 3 | 2776 | All | 0.000001 |
N | 364 | P364L | cCa | cTa | 2367 | 2370 | B.1.2 | 0.020842 |
N | 364 | P364L | CCa | TTa | 1 | 2370 | B.1.2 | 0.000009 |
N | 364 | P364L | cCA | cTG | 1 | 2370 | B.1.2 | 0.000009 |
N | 364 | P364L | cCA | cTC | 1 | 2370 | B.1.2 | 0.000009 |
N | 364 | P364S | Cca | Tca | 1265 | 1265 | B.1.2 | 0.011139 |
N | 364 | P364S | Cca | Tca | 561 | 567 | B.1.1.7 | 0.000502 |
N | 364 | P364S | CCA | AGC | 4 | 567 | B.1.1.7 | 0.000004 |
N | 364 | P364S | CCA | AGT | 2 | 567 | B.1.1.7 | 0.000002 |
N | 364 | P364T | Cca | Aca | 524 | 551 | All | 0.0001 |
N | 364 | P364T | CcA | AcC | 14 | 551 | All | 0.000003 |
N | 364 | P364T | CcA | AcG | 9 | 551 | All | 0.000002 |
N | 364 | P364T | CcA | AcT | 4 | 551 | All | 0.000001 |
N | 364 | P364T | Cca | Aca | 407 | 407 | AU.1 | 0.51519 |
N | 364 | P364L | cCa | cTa | 380 | 381 | B.1.617.2 | 0.001431 |
N | 364 | P364L | CCa | TTa | 1 | 381 | B.1.617.2 | 0.000004 |
N | 364 | P364L | cCa | cTa | 262 | 263 | B.1.1.7 | 0.000235 |
N | 364 | P364L | cCA | cTC | 1 | 263 | B.1.1.7 | 0.000001 |
N | 364 | P364P | ccA | ccG | 90 | 189 | All | 0.000017 |
N | 364 | P364P | ccA | ccT | 71 | 189 | All | 0.000014 |
N | 364 | P364P | ccA | ccC | 28 | 189 | All | 0.000005 |
N | 364 | P364Q | cCa | cAa | 159 | 174 | All | 0.00003 |
N | 364 | P364Q | cCA | cAG | 15 | 174 | All | 0.000003 |
N | 364 | P364S | Cca | Tca | 173 | 173 | B.1.617.2 | 0.000651 |
N | 364 | P364L | cCa | cTa | 170 | 170 | AY.102 | 0.004507 |
N | 364 | P364L | cCa | cTa | 162 | 162 | B.1.573 | 0.987805 |
N | 364 | P364S | Cca | Tca | 147 | 147 | AY.4 | 0.000229 |
N | 364 | P364L | cCa | cTa | 137 | 137 | AY.4 | 0.000213 |
N | 364 | P364L | cCa | cTa | 114 | 116 | B.1 | 0.001044 |
N | 364 | P364L | cCA | cTC | 1 | 116 | B.1 | 0.000009 |
N | 364 | P364L | CCa | TTa | 1 | 116 | B.1 | 0.000009 |
N | 364 | P364K | CCa | AAa | 65 | 84 | All | 0.000012 |
N | 364 | P364K | CCA | AAG | 19 | 84 | All | 0.000004 |
N | 364 | P364S | Cca | Tca | 75 | 84 | B.1 | 0.000687 |
N | 364 | P364S | CcA | TcC | 6 | 84 | B.1 | 0.000055 |
N | 364 | P364S | CcA | TcG | 1 | 84 | B.1 | 0.000009 |
N | 364 | P364S | CCA | AGT | 1 | 84 | B.1 | 0.000009 |
N | 364 | P364S | CCA | AGC | 1 | 84 | B.1 | 0.000009 |
N | 364 | P364R | cCa | cGa | 33 | 75 | All | 0.000006 |
N | 364 | P364R | CCa | AGa | 22 | 75 | All | 0.000004 |
N | 364 | P364R | CCA | AGG | 9 | 75 | All | 0.000002 |
N | 364 | P364R | cCA | cGG | 5 | 75 | All | 0.000001 |
N | 364 | P364R | cCA | cGC | 3 | 75 | All | 0.000001 |
N | 364 | P364R | cCA | cGT | 3 | 75 | All | 0.000001 |
N | 364 | P364A | Cca | Gca | 53 | 61 | All | 0.00001 |
N | 364 | P364A | CcA | GcT | 3 | 61 | All | 0.000001 |
N | 364 | P364A | CcA | GcC | 3 | 61 | All | 0.000001 |
N | 364 | P364A | CcA | GcG | 2 | 61 | All | 0 |
N | 364 | P364L | cCa | cTa | 60 | 60 | B.1.1 | 0.001088 |
N | 364 | P364R | cCa | cGa | 23 | 59 | B.1.1.7 | 0.000021 |
N | 364 | P364R | CCa | AGa | 20 | 59 | B.1.1.7 | 0.000018 |
N | 364 | P364R | CCA | AGG | 8 | 59 | B.1.1.7 | 0.000007 |
N | 364 | P364R | cCA | cGG | 4 | 59 | B.1.1.7 | 0.000004 |
N | 364 | P364R | cCA | cGC | 2 | 59 | B.1.1.7 | 0.000002 |
N | 364 | P364R | cCA | cGT | 2 | 59 | B.1.1.7 | 0.000002 |
N | 364 | P364P | ccA | ccT | 38 | 56 | B.1.1.7 | 0.000034 |
N | 364 | P364P | ccA | ccG | 14 | 56 | B.1.1.7 | 0.000013 |
N | 364 | P364P | ccA | ccC | 4 | 56 | B.1.1.7 | 0.000004 |
N | 364 | P364L | cCa | cTa | 49 | 49 | AY.44 | 0.000298 |
N | 364 | P364T | Cca | Aca | 38 | 49 | B.1 | 0.000348 |
N | 364 | P364T | CcA | AcC | 7 | 49 | B.1 | 0.000064 |
N | 364 | P364T | CcA | AcG | 3 | 49 | B.1 | 0.000027 |
N | 364 | P364T | CcA | AcT | 1 | 49 | B.1 | 0.000009 |
N | 364 | P364Q | cCa | cAa | 40 | 46 | B.1.1.7 | 0.000036 |
N | 364 | P364Q | cCA | cAG | 6 | 46 | B.1.1.7 | 0.000005 |
N | 364 | P364K | CCa | AAa | 34 | 45 | B.1.1.7 | 0.00003 |
N | 364 | P364K | CCA | AAG | 11 | 45 | B.1.1.7 | 0.00001 |
N | 364 | P364L | cCa | cTa | 42 | 42 | AY.43 | 0.000186 |
N | 364 | P364del | CCA | --- | 39 | 39 | All | 0.000007 |
N | 364 | P364Q | cCa | cAa | 35 | 39 | B.1 | 0.000321 |
N | 364 | P364Q | cCA | cAG | 4 | 39 | B.1 | 0.000037 |
N | 364 | P364L | cCa | cTa | 37 | 39 | B.1.160 | 0.001154 |
N | 364 | P364L | CCa | TTa | 1 | 39 | B.1.160 | 0.000031 |
N | 364 | P364L | cCA | cTC | 1 | 39 | B.1.160 | 0.000031 |
N | 364 | P364L | cCa | cTa | 39 | 39 | P.1 | 0.000614 |
N | 364 | P364S | Cca | Tca | 38 | 38 | B.1.1.222 | 0.007752 |
N | 364 | P364S | Cca | Tca | 38 | 38 | B.1.429 | 0.000894 |
N | 364 | P364L | cCa | cTa | 33 | 33 | P.1.14 | 0.001577 |
N | 364 | P364L | cCa | cTa | 30 | 30 | B.1.429 | 0.000706 |
N | 364 | P364S | Cca | Tca | 28 | 28 | P.1 | 0.000441 |
N | 364 | P364X | CCa | TAa | 16 | 27 | All | 0.000003 |
N | 364 | P364X | CCa | TGa | 6 | 27 | All | 0.000001 |
N | 364 | P364X | CCA | TAG | 5 | 27 | All | 0.000001 |
N | 364 | P364A | Cca | Gca | 26 | 26 | AY.115 | 0.135417 |
N | 364 | P364N | CCA | AAC | 19 | 25 | All | 0.000004 |
N | 364 | P364N | CCA | AAT | 6 | 25 | All | 0.000001 |
N | 364 | P364L | cCa | cTa | 25 | 25 | AY.39 | 0.000618 |
N | 364 | P364L | cCa | cTa | 25 | 25 | AY.47 | 0.000778 |
N | 364 | P364S | Cca | Tca | 25 | 25 | B.1.258 | 0.001664 |
N | 364 | P364T | Cca | Aca | 16 | 24 | B.1.1.7 | 0.000014 |
N | 364 | P364T | CcA | AcT | 3 | 24 | B.1.1.7 | 0.000003 |
N | 364 | P364T | CcA | AcC | 3 | 24 | B.1.1.7 | 0.000003 |
N | 364 | P364T | CcA | AcG | 2 | 24 | B.1.1.7 | 0.000002 |
N | 364 | P364S | Cca | Tca | 23 | 23 | AY.103 | 0.000143 |
N | 364 | P364L | cCa | cTa | 23 | 23 | AY.98.1 | 0.001114 |
N | 364 | P364H | cCA | cAC | 18 | 22 | All | 0.000003 |
N | 364 | P364H | cCA | cAT | 4 | 22 | All | 0.000001 |
N | 364 | P364L | cCa | cTa | 22 | 22 | AY.3 | 0.000219 |
N | 364 | P364K | CCa | AAa | 19 | 22 | B.1 | 0.000174 |
N | 364 | P364K | CCA | AAG | 3 | 22 | B.1 | 0.000027 |
N | 364 | P364P | ccA | ccC | 12 | 21 | B.1 | 0.00011 |
N | 364 | P364P | ccA | ccG | 7 | 21 | B.1 | 0.000064 |
N | 364 | P364P | ccA | ccT | 2 | 21 | B.1 | 0.000018 |
N | 364 | P364L | cCa | cTa | 21 | 21 | B.1.596 | 0.00183 |
N | 364 | P364S | Cca | Tca | 20 | 20 | AY.100 | 0.00092 |
N | 364 | P364L | cCa | cTa | 18 | 18 | AY.103 | 0.000112 |
N | 364 | P364Q | cCa | cAa | 16 | 17 | AY.25 | 0.000096 |
N | 364 | P364Q | cCA | cAG | 1 | 17 | AY.25 | 0.000006 |
N | 364 | P364S | Cca | Tca | 17 | 17 | B.1.318 | 0.653846 |
N | 364 | P364L | cCa | cTa | 17 | 17 | B.1.427 | 0.000858 |
N | 364 | P364L | cCa | cTa | 16 | 16 | AY.25 | 0.000096 |
N | 364 | P364S | Cca | Tca | 16 | 16 | AY.29 | 0.000252 |
N | 364 | P364P | ccA | ccG | 15 | 15 | AY.3 | 0.000149 |
N | 364 | P364S | Cca | Tca | 15 | 15 | AY.43 | 0.000066 |
N | 364 | P364E | CCa | GAa | 12 | 14 | All | 0.000002 |
N | 364 | P364E | CCA | GAG | 2 | 14 | All | 0 |
N | 364 | P364S | Cca | Tca | 14 | 14 | AY.102 | 0.000371 |
N | 364 | P364L | cCa | cTa | 14 | 14 | B.1.1.416 | 0.01267 |
N | 364 | P364N | CCA | AAC | 9 | 14 | B.1.1.7 | 0.000008 |
N | 364 | P364X | CCa | TGa | 6 | 14 | B.1.1.7 | 0.000005 |
N | 364 | P364X | CCa | TAa | 6 | 14 | B.1.1.7 | 0.000005 |
N | 364 | P364N | CCA | AAT | 5 | 14 | B.1.1.7 | 0.000004 |
N | 364 | P364X | CCA | TAG | 2 | 14 | B.1.1.7 | 0.000002 |
N | 364 | P364T | Cca | Aca | 12 | 14 | B.1.2 | 0.000106 |
N | 364 | P364T | CcA | AcC | 1 | 14 | B.1.2 | 0.000009 |
N | 364 | P364T | CcA | AcG | 1 | 14 | B.1.2 | 0.000009 |
N | 364 | P364L | cCa | cTa | 13 | 13 | AY.4.2 | 0.000282 |
N | 364 | P364S | Cca | Tca | 13 | 13 | AY.5 | 0.000268 |
N | 364 | P364L | cCa | cTa | 11 | 11 | AY.26 | 0.000311 |
N | 364 | P364S | Cca | Tca | 11 | 11 | AY.39 | 0.000272 |
N | 364 | P364S | Cca | Tca | 10 | 11 | B.1.1 | 0.000181 |
N | 364 | P364S | CcA | TcG | 1 | 11 | B.1.1 | 0.000018 |
N | 364 | P364L | cCa | cTa | 11 | 11 | B.1.1.318 | 0.003319 |
N | 364 | P364S | Cca | Tca | 11 | 11 | B.1.596 | 0.000959 |
N | 364 | P364P | ccA | ccG | 5 | 11 | B.1.617.2 | 0.000019 |
N | 364 | P364P | ccA | ccT | 5 | 11 | B.1.617.2 | 0.000019 |
N | 364 | P364P | ccA | ccC | 1 | 11 | B.1.617.2 | 0.000004 |
N | 364 | P364Q | cCa | cAa | 10 | 10 | AY.44 | 0.000061 |
N | 364 | P364L | cCa | cTa | 9 | 10 | AY.98 | 0.000711 |
N | 364 | P364L | CCa | TTa | 1 | 10 | AY.98 | 0.000079 |
N | 364 | P364del | CCA | --- | 10 | 10 | B.1.1.7 | 0.000009 |
N | 364 | P364S | Cca | Tca | 10 | 10 | B.1.177 | 0.000132 |
N | 364 | P364L | cCa | cTa | 10 | 10 | B.1.258 | 0.000665 |
N | 364 | P364S | Cca | Tca | 9 | 9 | AY.4.2 | 0.000195 |
N | 364 | P364Q | cCa | cAa | 9 | 9 | AY.45 | 0.001095 |
N | 364 | P364H | cCA | cAC | 8 | 9 | B.1 | 0.000073 |
N | 364 | P364H | cCA | cAT | 1 | 9 | B.1 | 0.000009 |
N | 364 | P364E | CCa | GAa | 8 | 9 | B.1.1.7 | 0.000007 |
N | 364 | P364A | Cca | Gca | 7 | 9 | B.1.1.7 | 0.000006 |
N | 364 | P364H | cCA | cAC | 6 | 9 | B.1.1.7 | 0.000005 |
N | 364 | P364H | cCA | cAT | 3 | 9 | B.1.1.7 | 0.000003 |
N | 364 | P364E | CCA | GAG | 1 | 9 | B.1.1.7 | 0.000001 |
N | 364 | P364A | CcA | GcT | 1 | 9 | B.1.1.7 | 0.000001 |
N | 364 | P364A | CcA | GcG | 1 | 9 | B.1.1.7 | 0.000001 |
N | 364 | P364S | Cca | Tca | 9 | 9 | B.1.214.3 | 0.064286 |
N | 364 | P364L | cCa | cTa | 9 | 9 | P.2 | 0.00168 |
N | 364 | P364I | CCA | ATC | 4 | 8 | All | 0.000001 |
N | 364 | P364I | CCa | ATa | 4 | 8 | All | 0.000001 |
N | 364 | P364L | cCa | cTa | 8 | 8 | AY.34 | 0.000776 |
N | 364 | P364X | CCa | TAa | 7 | 8 | B.1 | 0.000064 |
N | 364 | P364X | CCA | TAG | 1 | 8 | B.1 | 0.000009 |
N | 364 | P364L | cCa | cTa | 8 | 8 | B.1.1.214 | 0.000444 |
N | 364 | P364L | cCa | cTa | 8 | 8 | B.1.1.244 | 0.123077 |
N | 364 | P364S | Cca | Tca | 8 | 8 | B.1.1.39 | 0.004077 |
N | 364 | P364P | ccA | ccT | 5 | 8 | B.1.177 | 0.000066 |
N | 364 | P364P | ccA | ccG | 3 | 8 | B.1.177 | 0.00004 |
N | 364 | P364L | cCa | cTa | 8 | 8 | B.1.351 | 0.000238 |
N | 364 | P364T | Cca | Aca | 8 | 8 | B.1.367 | 0.006339 |
N | 364 | P364L | cCa | cTa | 8 | 8 | B.1.400 | 0.003432 |
N | 364 | P364Y | CCA | TAC | 7 | 7 | All | 0.000001 |
N | 364 | P364A | Cca | Gca | 7 | 7 | AY.116 | 0.002007 |
N | 364 | P364S | Cca | Tca | 7 | 7 | AY.117 | 0.000592 |
N | 364 | P364S | Cca | Tca | 7 | 7 | AY.44 | 0.000043 |
N | 364 | P364L | cCa | cTa | 7 | 7 | AY.45 | 0.000852 |
N | 364 | P364S | Cca | Tca | 7 | 7 | AY.57 | 0.004593 |
N | 364 | P364S | Cca | Tca | 7 | 7 | AY.60 | 0.006567 |
N | 364 | P364N | CCA | AAC | 6 | 7 | B.1 | 0.000055 |
N | 364 | P364A | Cca | Gca | 5 | 7 | B.1 | 0.000046 |
N | 364 | P364A | CcA | GcC | 2 | 7 | B.1 | 0.000018 |
N | 364 | P364N | CCA | AAT | 1 | 7 | B.1 | 0.000009 |
N | 364 | P364L | cCa | cTa | 7 | 7 | B.1.221 | 0.000497 |
N | 364 | P364S | Cca | Tca | 7 | 7 | B.1.243 | 0.000487 |
N | 364 | P364L | cCa | cTa | 7 | 7 | B.1.258.17 | 0.000728 |
N | 364 | P364S | Cca | Tca | 7 | 7 | B.1.427 | 0.000353 |
N | 364 | P364D | CCA | GAC | 5 | 6 | All | 0.000001 |
N | 364 | P364G | CCa | GGa | 4 | 6 | All | 0.000001 |
N | 364 | P364G | CCA | GGC | 2 | 6 | All | 0 |
N | 364 | P364D | CCA | GAT | 1 | 6 | All | 0 |
N | 364 | P364L | cCa | cTa | 6 | 6 | AY.117 | 0.000507 |
N | 364 | P364S | Cca | Tca | 6 | 6 | AY.25 | 0.000036 |
N | 364 | P364S | Cca | Tca | 6 | 6 | AY.3 | 0.00006 |
N | 364 | P364L | cCa | cTa | 6 | 6 | AY.46 | 0.000624 |
N | 364 | P364L | cCa | cTa | 6 | 6 | AY.54 | 0.000572 |
N | 364 | P364L | cCa | cTa | 6 | 6 | B.1.1.519 | 0.000238 |
N | 364 | P364G | CCa | GGa | 4 | 6 | B.1.1.7 | 0.000004 |
N | 364 | P364G | CCA | GGC | 2 | 6 | B.1.1.7 | 0.000002 |
N | 364 | P364del | CCA | --- | 6 | 6 | B.1.177 | 0.000079 |
N | 364 | P364S | Cca | Tca | 6 | 6 | B.1.234 | 0.000792 |
N | 364 | P364L | cCa | cTa | 6 | 6 | B.3 | 0.004983 |
N | 364 | P364L | cCa | cTa | 5 | 5 | AY.111 | 0.000916 |
N | 364 | P364P | ccA | ccT | 3 | 5 | AY.4 | 0.000005 |
N | 364 | P364P | ccA | ccC | 1 | 5 | AY.4 | 0.000002 |
N | 364 | P364P | ccA | ccG | 1 | 5 | AY.4 | 0.000002 |
N | 364 | P364S | Cca | Tca | 5 | 5 | AY.42 | 0.000201 |
N | 364 | P364S | Cca | Tca | 5 | 5 | AY.6 | 0.000206 |
N | 364 | P364L | cCa | cTa | 5 | 5 | AY.84 | 0.002187 |
N | 364 | P364Q | cCa | cAa | 5 | 5 | AY.98 | 0.000395 |
N | 364 | P364L | cCa | cTa | 5 | 5 | B | 0.000639 |
N | 364 | P364Y | CCA | TAC | 5 | 5 | B.1 | 0.000046 |
N | 364 | P364P | ccA | ccG | 3 | 5 | B.1.1 | 0.000054 |
N | 364 | P364Q | cCa | cAa | 3 | 5 | B.1.1 | 0.000054 |
N | 364 | P364Q | cCA | cAG | 2 | 5 | B.1.1 | 0.000036 |
N | 364 | P364P | ccA | ccT | 2 | 5 | B.1.1 | 0.000036 |
N | 364 | P364L | cCa | cTa | 5 | 5 | B.1.1.50 | 0.003394 |
N | 364 | P364Q | cCa | cAa | 4 | 5 | B.1.2 | 0.000035 |
N | 364 | P364P | ccA | ccC | 2 | 5 | B.1.2 | 0.000018 |
N | 364 | P364P | ccA | ccG | 2 | 5 | B.1.2 | 0.000018 |
N | 364 | P364P | ccA | ccT | 1 | 5 | B.1.2 | 0.000009 |
N | 364 | P364Q | cCA | cAG | 1 | 5 | B.1.2 | 0.000009 |
N | 364 | P364S | Cca | Tca | 5 | 5 | B.1.577 | 0.003436 |
N | 364 | P364S | Cca | Tca | 5 | 5 | B.1.595 | 0.001305 |
N | 364 | P364L | cCa | cTa | 5 | 5 | B.1.621 | 0.000443 |
N | 364 | P364P | ccA | ccG | 3 | 4 | AY.103 | 0.000019 |
N | 364 | P364P | ccA | ccT | 1 | 4 | AY.103 | 0.000006 |
N | 364 | P364L | cCa | cTa | 4 | 4 | AY.105 | 0.002572 |
N | 364 | P364S | Cca | Tca | 4 | 4 | AY.116 | 0.001147 |
N | 364 | P364L | cCa | cTa | 4 | 4 | AY.120 | 0.000149 |
N | 364 | P364L | cCa | cTa | 4 | 4 | AY.21 | 0.00759 |
N | 364 | P364R | cCa | cGa | 1 | 4 | AY.25 | 0.000006 |
N | 364 | P364R | CCA | AGG | 1 | 4 | AY.25 | 0.000006 |
N | 364 | P364R | cCA | cGG | 1 | 4 | AY.25 | 0.000006 |
N | 364 | P364R | CCa | AGa | 1 | 4 | AY.25 | 0.000006 |
N | 364 | P364L | cCa | cTa | 4 | 4 | AY.29 | 0.000063 |
N | 364 | P364P | ccA | ccG | 4 | 4 | AY.46.6 | 0.000289 |
N | 364 | P364S | Cca | Tca | 4 | 4 | AY.75 | 0.000224 |
N | 364 | P364L | cCa | cTa | 4 | 4 | AY.82 | 0.005427 |
N | 364 | P364R | cCa | cGa | 1 | 4 | B.1 | 0.000009 |
N | 364 | P364R | CCa | AGa | 1 | 4 | B.1 | 0.000009 |
N | 364 | P364R | cCA | cGT | 1 | 4 | B.1 | 0.000009 |
N | 364 | P364R | cCA | cGC | 1 | 4 | B.1 | 0.000009 |
N | 364 | P364del | CCA | --- | 4 | 4 | B.1.1 | 0.000073 |
N | 364 | P364T | Cca | Aca | 2 | 4 | B.1.1 | 0.000036 |
N | 364 | P364T | CcA | AcG | 2 | 4 | B.1.1 | 0.000036 |
N | 364 | P364K | CCA | AAG | 2 | 4 | B.1.1 | 0.000036 |
N | 364 | P364K | CCa | AAa | 2 | 4 | B.1.1 | 0.000036 |
N | 364 | P364P | ccA | ccT | 4 | 4 | B.1.1.192 | 0.009238 |
N | 364 | P364L | cCa | cTa | 4 | 4 | B.1.1.409 | 0.011331 |
N | 364 | P364L | cCa | cTa | 4 | 4 | B.1.177 | 0.000053 |
N | 364 | P364L | cCa | cTa | 4 | 4 | B.1.243 | 0.000278 |
N | 364 | P364S | Cca | Tca | 4 | 4 | B.1.357 | 0.038095 |
N | 364 | P364T | Cca | Aca | 4 | 4 | B.1.466.2 | 0.001565 |
N | 364 | P364S | Cca | Tca | 4 | 4 | B.1.525 | 0.000453 |
N | 364 | P364S | Cca | Tca | 4 | 4 | B.1.526 | 0.000094 |
N | 364 | P364Q | cCa | cAa | 4 | 4 | B.46 | 0.083333 |
N | 364 | P364P | ccA | ccG | 3 | 3 | A.1 | 0.000846 |
N | 364 | P364del1 | ccA | cc- | 3 | 3 | All | 0.000001 |
N | 364 | P364V | CCa | GTa | 1 | 3 | All | 0 |
N | 364 | P364V | CCA | GTG | 1 | 3 | All | 0 |
N | 364 | P364V | CCA | GTC | 1 | 3 | All | 0 |
N | 364 | P364P | ccA | ccG | 3 | 3 | AY.20 | 0.000117 |
N | 364 | P364L | cCa | cTa | 3 | 3 | AY.34.1 | 0.00153 |
N | 364 | P364Q | cCa | cAa | 3 | 3 | AY.4 | 0.000005 |
N | 364 | P364P | ccA | ccT | 1 | 3 | AY.43 | 0.000004 |
N | 364 | P364P | ccA | ccG | 1 | 3 | AY.43 | 0.000004 |
N | 364 | P364P | ccA | ccC | 1 | 3 | AY.43 | 0.000004 |
N | 364 | P364S | Cca | Tca | 3 | 3 | AY.47 | 0.000093 |
N | 364 | P364S | Cca | Tca | 3 | 3 | AY.53 | 0.000863 |
N | 364 | P364L | cCa | cTa | 3 | 3 | AY.59 | 0.001589 |
N | 364 | P364L | cCa | cTa | 3 | 3 | AY.74 | 0.000347 |
N | 364 | P364L | cCa | cTa | 3 | 3 | AY.78 | 0.004622 |
N | 364 | P364E | CCa | GAa | 3 | 3 | B.1 | 0.000027 |
N | 364 | P364Q | cCa | cAa | 3 | 3 | B.1.1.115 | 0.026786 |
N | 364 | P364P | ccA | ccG | 3 | 3 | B.1.1.214 | 0.000166 |
N | 364 | P364S | Cca | Tca | 3 | 3 | B.1.1.348 | 0.002389 |
N | 364 | P364S | Cca | Tca | 3 | 3 | B.1.1.397 | 0.006757 |
N | 364 | P364P | ccA | ccT | 2 | 3 | B.1.1.519 | 0.000079 |
N | 364 | P364P | ccA | ccG | 1 | 3 | B.1.1.519 | 0.00004 |
N | 364 | P364D | CCA | GAC | 2 | 3 | B.1.1.7 | 0.000002 |
N | 364 | P364D | CCA | GAT | 1 | 3 | B.1.1.7 | 0.000001 |
N | 364 | P364L | cCa | cTa | 3 | 3 | B.1.177.60 | 0.000655 |
N | 364 | P364L | cCa | cTa | 3 | 3 | B.1.177.73 | 0.001699 |
N | 364 | P364A | CcA | GcC | 1 | 3 | B.1.2 | 0.000009 |
N | 364 | P364V | CCA | GTC | 1 | 3 | B.1.2 | 0.000009 |
N | 364 | P364V | CCA | GTG | 1 | 3 | B.1.2 | 0.000009 |
N | 364 | P364A | CcA | GcG | 1 | 3 | B.1.2 | 0.000009 |
N | 364 | P364A | Cca | Gca | 1 | 3 | B.1.2 | 0.000009 |
N | 364 | P364V | CCa | GTa | 1 | 3 | B.1.2 | 0.000009 |
N | 364 | P364S | Cca | Tca | 3 | 3 | B.1.311 | 0.000824 |
N | 364 | P364S | Cca | Tca | 3 | 3 | B.1.361 | 0.003866 |
N | 364 | P364L | cCa | cTa | 3 | 3 | B.1.369 | 0.000856 |
N | 364 | P364T | Cca | Aca | 1 | 3 | B.1.437 | 0.020833 |
N | 364 | P364S | Cca | Tca | 1 | 3 | B.1.437 | 0.020833 |
N | 364 | P364T | CcA | AcC | 1 | 3 | B.1.437 | 0.020833 |
N | 364 | P364S | CcA | TcC | 1 | 3 | B.1.437 | 0.020833 |
N | 364 | P364T | CcA | AcG | 1 | 3 | B.1.437 | 0.020833 |
N | 364 | P364S | CcA | TcG | 1 | 3 | B.1.437 | 0.020833 |
N | 364 | P364L | cCa | cTa | 3 | 3 | B.1.466.2 | 0.001174 |
N | 364 | P364S | Cca | Tca | 3 | 3 | B.1.470 | 0.004213 |
N | 364 | P364S | Cca | Tca | 3 | 3 | B.1.617.1 | 0.000387 |
N | 364 | P364S | Cca | Tca | 3 | 3 | B.1.9.2 | 0.3 |
N | 364 | P364L | cCa | cTa | 2 | 2 | 0.111111 | |
N | 364 | P364L | cCa | cTa | 2 | 2 | A | 0.000774 |
N | 364 | P364S | Cca | Tca | 2 | 2 | A.2.5 | 0.000998 |
N | 364 | P364W | CCA | TGG | 2 | 2 | All | 0 |
N | 364 | P364F | CCA | TTC | 2 | 2 | All | 0 |
N | 364 | P364S | Cca | Tca | 2 | 2 | AU.3 | 0.004219 |
N | 364 | P364L | cCa | cTa | 2 | 2 | AY.100 | 0.000092 |
N | 364 | P364L | cCa | cTa | 2 | 2 | AY.116 | 0.000574 |
N | 364 | P364S | Cca | Tca | 2 | 2 | AY.119 | 0.000071 |
N | 364 | P364S | Cca | Tca | 2 | 2 | AY.120.1 | 0.000642 |
N | 364 | P364P | ccA | ccG | 2 | 2 | AY.121 | 0.000271 |
N | 364 | P364L | cCa | cTa | 2 | 2 | AY.13 | 0.000322 |
N | 364 | P364L | cCa | cTa | 2 | 2 | AY.20 | 0.000078 |
N | 364 | P364S | Cca | Tca | 2 | 2 | AY.23 | 0.000139 |
N | 364 | P364L | cCa | cTa | 2 | 2 | AY.23 | 0.000139 |
N | 364 | P364K | CCa | AAa | 1 | 2 | AY.25 | 0.000006 |
N | 364 | P364K | CCA | AAG | 1 | 2 | AY.25 | 0.000006 |
N | 364 | P364P | ccA | ccG | 1 | 2 | AY.25 | 0.000006 |
N | 364 | P364P | ccA | ccT | 1 | 2 | AY.25 | 0.000006 |
N | 364 | P364S | Cca | Tca | 2 | 2 | AY.28 | 0.003781 |
N | 364 | P364T | Cca | Aca | 2 | 2 | AY.30 | 0.000791 |
N | 364 | P364S | Cca | Tca | 2 | 2 | AY.32 | 0.001065 |
N | 364 | P364L | cCa | cTa | 2 | 2 | AY.33 | 0.000134 |
N | 364 | P364T | Cca | Aca | 2 | 2 | AY.4 | 0.000003 |
N | 364 | P364Q | cCa | cAa | 2 | 2 | AY.43 | 0.000009 |
N | 364 | P364S | Cca | Tca | 2 | 2 | AY.45 | 0.000243 |
N | 364 | P364L | cCa | cTa | 2 | 2 | AY.5 | 0.000041 |
N | 364 | P364L | cCa | cTa | 2 | 2 | AY.5.3 | 0.000675 |
N | 364 | P364L | cCa | cTa | 2 | 2 | AY.51 | 0.001818 |
N | 364 | P364L | cCa | cTa | 2 | 2 | AY.60 | 0.001876 |
N | 364 | P364S | Cca | Tca | 2 | 2 | AY.61 | 0.00021 |
N | 364 | P364L | cCa | cTa | 2 | 2 | AY.64 | 0.00119 |
N | 364 | P364L | cCa | cTa | 2 | 2 | AY.7 | 0.000392 |
N | 364 | P364S | Cca | Tca | 2 | 2 | AY.9 | 0.000135 |
N | 364 | P364L | cCa | cTa | 2 | 2 | AY.92 | 0.000575 |
N | 364 | P364S | Cca | Tca | 2 | 2 | AY.98.1 | 0.000097 |
N | 364 | P364S | Cca | Tca | 2 | 2 | B | 0.000256 |
N | 364 | P364del | CCA | --- | 2 | 2 | B.1 | 0.000018 |
N | 364 | P364del1 | ccA | cc- | 2 | 2 | B.1 | 0.000018 |
N | 364 | P364D | CCA | GAC | 2 | 2 | B.1 | 0.000018 |
N | 364 | P364I | CCa | ATa | 1 | 2 | B.1 | 0.000009 |
N | 364 | P364I | CCA | ATC | 1 | 2 | B.1 | 0.000009 |
N | 364 | P364A | CcA | GcT | 2 | 2 | B.1.1 | 0.000036 |
N | 364 | P364R | cCa | cGa | 2 | 2 | B.1.1 | 0.000036 |
N | 364 | P364X | CCa | TAa | 1 | 2 | B.1.1 | 0.000018 |
N | 364 | P364X | CCA | TAG | 1 | 2 | B.1.1 | 0.000018 |
N | 364 | P364S | Cca | Tca | 2 | 2 | B.1.1.25 | 0.001137 |
N | 364 | P364T | Cca | Aca | 2 | 2 | B.1.1.299 | 0.02439 |
N | 364 | P364L | cCa | cTa | 2 | 2 | B.1.1.311 | 0.000716 |
N | 364 | P364S | Cca | Tca | 2 | 2 | B.1.1.316 | 0.00185 |
N | 364 | P364S | Cca | Tca | 2 | 2 | B.1.1.33 | 0.000842 |
N | 364 | P364W | CCA | TGG | 2 | 2 | B.1.1.7 | 0.000002 |
N | 364 | P364I | CCA | ATC | 1 | 2 | B.1.1.7 | 0.000001 |
N | 364 | P364I | CCa | ATa | 1 | 2 | B.1.1.7 | 0.000001 |
N | 364 | P364K | CCa | AAa | 2 | 2 | B.1.160 | 0.000062 |
N | 364 | P364I | CCA | ATC | 1 | 2 | B.1.160 | 0.000031 |
N | 364 | P364S | Cca | Tca | 1 | 2 | B.1.160 | 0.000031 |
N | 364 | P364T | Cca | Aca | 1 | 2 | B.1.160 | 0.000031 |
N | 364 | P364S | CcA | TcC | 1 | 2 | B.1.160 | 0.000031 |
N | 364 | P364T | CcA | AcC | 1 | 2 | B.1.160 | 0.000031 |
N | 364 | P364I | CCa | ATa | 1 | 2 | B.1.160 | 0.000031 |
N | 364 | P364R | cCa | cGa | 2 | 2 | B.1.177.60 | 0.000437 |
N | 364 | P364L | cCa | cTa | 2 | 2 | B.1.177.77 | 0.001452 |
N | 364 | P364I | CCa | ATa | 1 | 2 | B.1.2 | 0.000009 |
N | 364 | P364E | CCa | GAa | 1 | 2 | B.1.2 | 0.000009 |
N | 364 | P364K | CCa | AAa | 1 | 2 | B.1.2 | 0.000009 |
N | 364 | P364E | CCA | GAG | 1 | 2 | B.1.2 | 0.000009 |
N | 364 | P364I | CCA | ATC | 1 | 2 | B.1.2 | 0.000009 |
N | 364 | P364K | CCA | AAG | 1 | 2 | B.1.2 | 0.000009 |
N | 364 | P364P | ccA | ccG | 2 | 2 | B.1.221 | 0.000142 |
N | 364 | P364T | Cca | Aca | 2 | 2 | B.1.260 | 0.006689 |
N | 364 | P364S | Cca | Tca | 2 | 2 | B.1.265 | 0.002541 |
N | 364 | P364L | cCa | cTa | 2 | 2 | B.1.346 | 0.002621 |
N | 364 | P364S | Cca | Tca | 2 | 2 | B.1.351 | 0.000059 |
N | 364 | P364S | Cca | Tca | 2 | 2 | B.1.36.16 | 0.002849 |
N | 364 | P364Q | cCa | cAa | 2 | 2 | B.1.36.19 | 0.018519 |
N | 364 | P364P | ccA | ccG | 2 | 2 | B.1.36.9 | 0.006431 |
N | 364 | P364T | Cca | Aca | 2 | 2 | B.1.404 | 0.002604 |
N | 364 | P364S | Cca | Tca | 2 | 2 | B.1.416.1 | 0.003125 |
N | 364 | P364Q | cCa | cAa | 1 | 2 | B.1.437 | 0.020833 |
N | 364 | P364X | CCA | TAG | 1 | 2 | B.1.437 | 0.020833 |
N | 364 | P364K | CCA | AAG | 1 | 2 | B.1.437 | 0.020833 |
N | 364 | P364P | ccA | ccC | 1 | 2 | B.1.437 | 0.020833 |
N | 364 | P364Q | cCA | cAG | 1 | 2 | B.1.437 | 0.020833 |
N | 364 | P364X | CCa | TAa | 1 | 2 | B.1.437 | 0.020833 |
N | 364 | P364K | CCa | AAa | 1 | 2 | B.1.437 | 0.020833 |
N | 364 | P364P | ccA | ccG | 1 | 2 | B.1.437 | 0.020833 |
N | 364 | P364del | CCA | --- | 2 | 2 | B.1.438.1 | 0.000215 |
N | 364 | P364L | cCa | cTa | 2 | 2 | B.1.526 | 0.000047 |
N | 364 | P364L | cCa | cTa | 2 | 2 | B.1.588 | 0.00182 |
N | 364 | P364A | Cca | Gca | 2 | 2 | B.1.617.2 | 0.000008 |
N | 364 | P364L | cCa | cTa | 2 | 2 | B.1.623 | 0.001073 |
N | 364 | P364L | cCa | cTa | 2 | 2 | B.1.628 | 0.000705 |
N | 364 | P364S | Cca | Tca | 2 | 2 | B.40 | 0.000729 |
N | 364 | P364S | Cca | Tca | 2 | 2 | C.1 | 0.004785 |
N | 364 | P364L | cCa | cTa | 2 | 2 | C.35 | 0.001548 |
N | 364 | P364S | Cca | Tca | 2 | 2 | C.36.3 | 0.001134 |
N | 364 | P364L | cCa | cTa | 2 | 2 | C.37 | 0.000232 |
N | 364 | P364del | CCA | --- | 2 | 2 | P.1 | 0.000032 |
N | 364 | P364T | CcA | AcC | 1 | 2 | P.1 | 0.000016 |
N | 364 | P364T | Cca | Aca | 1 | 2 | P.1 | 0.000016 |
N | 364 | P364L | cCa | cTa | 2 | 2 | P.3 | 0.00319 |
N | 364 | P364L | cCa | cTa | 2 | 2 | P.4 | 0.007605 |
N | 364 | P364L | cCa | cTa | 2 | 2 | Q.1 | 0.000253 |
N | 364 | P364P | ccA | ccG | 2 | 2 | Q.8 | 0.00033 |
N | 364 | P364T | Cca | Aca | 1 | 1 | A.2.5 | 0.000499 |
N | 364 | P364P | ccA | ccG | 1 | 1 | A.2.5 | 0.000499 |
N | 364 | P364L | cCa | cTa | 1 | 1 | A.23 | 0.010526 |
N | 364 | P364del2 | cCA | c-- | 1 | 1 | All | 0 |
N | 364 | P364M | CCA | ATG | 1 | 1 | All | 0 |
N | 364 | P364P | ccA | ccT | 1 | 1 | AY.100 | 0.000046 |
N | 364 | P364T | Cca | Aca | 1 | 1 | AY.101 | 0.00049 |
N | 364 | P364Q | cCa | cAa | 1 | 1 | AY.102 | 0.000027 |
N | 364 | P364Q | cCa | cAa | 1 | 1 | AY.103 | 0.000006 |
N | 364 | P364Q | cCa | cAa | 1 | 1 | AY.106 | 0.000335 |
N | 364 | P364L | cCa | cTa | 1 | 1 | AY.108 | 0.001103 |
N | 364 | P364L | cCa | cTa | 1 | 1 | AY.110 | 0.000113 |
N | 364 | P364S | Cca | Tca | 1 | 1 | AY.110 | 0.000113 |
N | 364 | P364T | Cca | Aca | 1 | 1 | AY.111 | 0.000183 |
N | 364 | P364S | Cca | Tca | 1 | 1 | AY.113 | 0.000142 |
N | 364 | P364Q | cCa | cAa | 1 | 1 | AY.113 | 0.000142 |
N | 364 | P364del | CCA | --- | 1 | 1 | AY.114 | 0.000231 |
N | 364 | P364L | cCa | cTa | 1 | 1 | AY.118 | 0.000063 |
N | 364 | P364L | cCa | cTa | 1 | 1 | AY.119 | 0.000035 |
N | 364 | P364S | Cca | Tca | 1 | 1 | AY.120 | 0.000037 |
N | 364 | P364L | cCa | cTa | 1 | 1 | AY.120.1 | 0.000321 |
N | 364 | P364L | cCa | cTa | 1 | 1 | AY.14 | 0.000088 |
N | 364 | P364T | Cca | Aca | 1 | 1 | AY.23 | 0.00007 |
N | 364 | P364K | CCa | AAa | 1 | 1 | AY.24 | 0.000431 |
N | 364 | P364P | ccA | ccG | 1 | 1 | AY.24 | 0.000431 |
N | 364 | P364Q | cCa | cAa | 1 | 1 | AY.24 | 0.000431 |
N | 364 | P364S | Cca | Tca | 1 | 1 | AY.26 | 0.000028 |
N | 364 | P364P | ccA | ccT | 1 | 1 | AY.26 | 0.000028 |
N | 364 | P364del | CCA | --- | 1 | 1 | AY.26 | 0.000028 |
N | 364 | P364L | cCa | cTa | 1 | 1 | AY.27 | 0.000065 |
N | 364 | P364T | Cca | Aca | 1 | 1 | AY.29 | 0.000016 |
N | 364 | P364S | Cca | Tca | 1 | 1 | AY.29.1 | 0.000221 |
N | 364 | P364Q | cCa | cAa | 1 | 1 | AY.3 | 0.00001 |
N | 364 | P364L | cCa | cTa | 1 | 1 | AY.3.1 | 0.000085 |
N | 364 | P364Q | cCa | cAa | 1 | 1 | AY.3.1 | 0.000085 |
N | 364 | P364S | Cca | Tca | 1 | 1 | AY.33 | 0.000067 |
N | 364 | P364S | Cca | Tca | 1 | 1 | AY.34 | 0.000097 |
N | 364 | P364P | ccA | ccG | 1 | 1 | AY.34 | 0.000097 |
N | 364 | P364S | Cca | Tca | 1 | 1 | AY.36 | 0.000148 |
N | 364 | P364P | ccA | ccG | 1 | 1 | AY.37 | 0.000316 |
N | 364 | P364P | ccA | ccG | 1 | 1 | AY.39 | 0.000025 |
N | 364 | P364T | Cca | Aca | 1 | 1 | AY.39.1 | 0.00004 |
N | 364 | P364S | Cca | Tca | 1 | 1 | AY.39.1 | 0.00004 |
N | 364 | P364A | Cca | Gca | 1 | 1 | AY.4 | 0.000002 |
N | 364 | P364R | cCa | cGa | 1 | 1 | AY.4.2 | 0.000022 |
N | 364 | P364T | Cca | Aca | 1 | 1 | AY.4.2 | 0.000022 |
N | 364 | P364S | Cca | Tca | 1 | 1 | AY.4.5 | 0.000107 |
N | 364 | P364S | Cca | Tca | 1 | 1 | AY.41 | 0.000294 |
N | 364 | P364L | cCa | cTa | 1 | 1 | AY.42 | 0.00004 |
N | 364 | P364Q | cCa | cAa | 1 | 1 | AY.42 | 0.00004 |
N | 364 | P364del | CCA | --- | 1 | 1 | AY.43 | 0.000004 |
N | 364 | P364T | Cca | Aca | 1 | 1 | AY.43 | 0.000004 |
N | 364 | P364P | ccA | ccG | 1 | 1 | AY.44 | 0.000006 |
N | 364 | P364A | Cca | Gca | 1 | 1 | AY.44 | 0.000006 |
N | 364 | P364T | Cca | Aca | 1 | 1 | AY.44 | 0.000006 |
N | 364 | P364T | Cca | Aca | 1 | 1 | AY.45 | 0.000122 |
N | 364 | P364A | Cca | Gca | 1 | 1 | AY.46 | 0.000104 |
N | 364 | P364L | cCa | cTa | 1 | 1 | AY.46.2 | 0.000635 |
N | 364 | P364L | cCa | cTa | 1 | 1 | AY.46.4 | 0.000165 |
N | 364 | P364Q | cCa | cAa | 1 | 1 | AY.47 | 0.000031 |
N | 364 | P364L | cCa | cTa | 1 | 1 | AY.53 | 0.000288 |
N | 364 | P364S | Cca | Tca | 1 | 1 | AY.54 | 0.000095 |
N | 364 | P364del | CCA | --- | 1 | 1 | AY.67 | 0.000464 |
N | 364 | P364L | cCa | cTa | 1 | 1 | AY.68 | 0.000274 |
N | 364 | P364L | cCa | cTa | 1 | 1 | AY.70 | 0.000209 |
N | 364 | P364S | Cca | Tca | 1 | 1 | AY.70 | 0.000209 |
N | 364 | P364L | cCa | cTa | 1 | 1 | AY.75 | 0.000056 |
N | 364 | P364S | Cca | Tca | 1 | 1 | AY.77 | 0.001127 |
N | 364 | P364del | CCA | --- | 1 | 1 | AY.78 | 0.001541 |
N | 364 | P364S | Cca | Tca | 1 | 1 | AY.8 | 0.000606 |
N | 364 | P364S | Cca | Tca | 1 | 1 | AY.84 | 0.000437 |
N | 364 | P364T | Cca | Aca | 1 | 1 | AY.85 | 0.000427 |
N | 364 | P364L | cCa | cTa | 1 | 1 | AY.9 | 0.000068 |
N | 364 | P364L | cCa | cTa | 1 | 1 | AY.9.1 | 0.000084 |
N | 364 | P364S | Cca | Tca | 1 | 1 | AY.98 | 0.000079 |
N | 364 | P364L | cCa | cTa | 1 | 1 | AY.99.2 | 0.000092 |
N | 364 | P364A | Cca | Gca | 1 | 1 | B | 0.000128 |
N | 364 | P364F | CCA | TTC | 1 | 1 | B.1 | 0.000009 |
N | 364 | P364K | CCa | AAa | 1 | 1 | B.1.1.1 | 0.000327 |
N | 364 | P364T | Cca | Aca | 1 | 1 | B.1.1.1 | 0.000327 |
N | 364 | P364Q | cCa | cAa | 1 | 1 | B.1.1.1 | 0.000327 |
N | 364 | P364L | cCa | cTa | 1 | 1 | B.1.1.121 | 0.002427 |
N | 364 | P364del | CCA | --- | 1 | 1 | B.1.1.139 | 0.022727 |
N | 364 | P364S | Cca | Tca | 1 | 1 | B.1.1.153 | 0.001095 |
N | 364 | P364L | cCa | cTa | 1 | 1 | B.1.1.153 | 0.001095 |
N | 364 | P364S | Cca | Tca | 1 | 1 | B.1.1.157 | 0.000913 |
N | 364 | P364L | cCa | cTa | 1 | 1 | B.1.1.170 | 0.001247 |
N | 364 | P364P | ccA | ccT | 1 | 1 | B.1.1.222 | 0.000204 |
N | 364 | P364S | Cca | Tca | 1 | 1 | B.1.1.232 | 0.001815 |
N | 364 | P364T | Cca | Aca | 1 | 1 | B.1.1.234 | 0.012048 |
N | 364 | P364T | Cca | Aca | 1 | 1 | B.1.1.25 | 0.000569 |
N | 364 | P364P | ccA | ccC | 1 | 1 | B.1.1.25 | 0.000569 |
N | 364 | P364L | cCa | cTa | 1 | 1 | B.1.1.251 | 0.007937 |
N | 364 | P364P | ccA | ccC | 1 | 1 | B.1.1.255 | 0.00303 |
N | 364 | P364L | cCa | cTa | 1 | 1 | B.1.1.263 | 0.001558 |
N | 364 | P364L | cCa | cTa | 1 | 1 | B.1.1.28 | 0.000311 |
N | 364 | P364R | cCa | cGa | 1 | 1 | B.1.1.280 | 0.003086 |
N | 364 | P364S | Cca | Tca | 1 | 1 | B.1.1.291 | 0.000742 |
N | 364 | P364L | cCa | cTa | 1 | 1 | B.1.1.306 | 0.000438 |
N | 364 | P364S | Cca | Tca | 1 | 1 | B.1.1.328 | 0.016949 |
N | 364 | P364L | cCa | cTa | 1 | 1 | B.1.1.335 | 0.012987 |
N | 364 | P364del | CCA | --- | 1 | 1 | B.1.1.37 | 0.000193 |
N | 364 | P364L | cCa | cTa | 1 | 1 | B.1.1.372 | 0.000689 |
N | 364 | P364L | cCa | cTa | 1 | 1 | B.1.1.398 | 0.003226 |
N | 364 | P364P | ccA | ccG | 1 | 1 | B.1.1.419 | 0.007407 |
N | 364 | P364S | Cca | Tca | 1 | 1 | B.1.1.434 | 0.000349 |
N | 364 | P364S | Cca | Tca | 1 | 1 | B.1.1.44 | 0.00241 |
N | 364 | P364L | cCa | cTa | 1 | 1 | B.1.1.507 | 0.008696 |
N | 364 | P364T | Cca | Aca | 1 | 1 | B.1.1.519 | 0.00004 |
N | 364 | P364L | cCa | cTa | 1 | 1 | B.1.1.63 | 0.000386 |
N | 364 | P364L | cCa | cTa | 1 | 1 | B.1.1.70 | 0.000341 |
N | 364 | P364S | Cca | Tca | 1 | 1 | B.1.111 | 0.001175 |
N | 364 | P364Q | cCa | cAa | 1 | 1 | B.1.118 | 0.006711 |
N | 364 | P364L | cCa | cTa | 1 | 1 | B.1.142 | 0.002899 |
N | 364 | P364S | Cca | Tca | 1 | 1 | B.1.146 | 0.004237 |
N | 364 | P364Y | CCA | TAC | 1 | 1 | B.1.160 | 0.000031 |
N | 364 | P364F | CCA | TTC | 1 | 1 | B.1.160 | 0.000031 |
N | 364 | P364P | ccA | ccC | 1 | 1 | B.1.160 | 0.000031 |
N | 364 | P364X | CCa | TAa | 1 | 1 | B.1.160 | 0.000031 |
N | 364 | P364Q | cCa | cAa | 1 | 1 | B.1.160 | 0.000031 |
N | 364 | P364H | cCA | cAC | 1 | 1 | B.1.160 | 0.000031 |
N | 364 | P364N | CCA | AAC | 1 | 1 | B.1.160 | 0.000031 |
N | 364 | P364del | CCA | --- | 1 | 1 | B.1.162 | 0.005025 |
N | 364 | P364del1 | ccA | cc- | 1 | 1 | B.1.177 | 0.000013 |
N | 364 | P364Q | cCa | cAa | 1 | 1 | B.1.177 | 0.000013 |
N | 364 | P364S | Cca | Tca | 1 | 1 | B.1.177.20 | 0.001517 |
N | 364 | P364L | cCa | cTa | 1 | 1 | B.1.177.57 | 0.000281 |
N | 364 | P364S | Cca | Tca | 1 | 1 | B.1.177.62 | 0.001192 |
N | 364 | P364del2 | cCA | c-- | 1 | 1 | B.1.177.63 | 0.002703 |
N | 364 | P364S | Cca | Tca | 1 | 1 | B.1.177.7 | 0.000165 |
N | 364 | P364L | cCa | cTa | 1 | 1 | B.1.177.81 | 0.000189 |
N | 364 | P364M | CCA | ATG | 1 | 1 | B.1.2 | 0.000009 |
N | 364 | P364H | cCA | cAC | 1 | 1 | B.1.2 | 0.000009 |
N | 364 | P364D | CCA | GAC | 1 | 1 | B.1.2 | 0.000009 |
N | 364 | P364N | CCA | AAC | 1 | 1 | B.1.2 | 0.000009 |
N | 364 | P364L | cCa | cTa | 1 | 1 | B.1.210 | 0.002132 |
N | 364 | P364S | Cca | Tca | 1 | 1 | B.1.214.2 | 0.0006 |
N | 364 | P364L | cCa | cTa | 1 | 1 | B.1.214.2 | 0.0006 |
N | 364 | P364del | CCA | --- | 1 | 1 | B.1.221 | 0.000071 |
N | 364 | P364S | Cca | Tca | 1 | 1 | B.1.223 | 0.002778 |
N | 364 | P364L | cCa | cTa | 1 | 1 | B.1.232 | 0.000537 |
N | 364 | P364L | cCa | cTa | 1 | 1 | B.1.234 | 0.000132 |
N | 364 | P364S | Cca | Tca | 1 | 1 | B.1.240 | 0.000216 |
N | 364 | P364A | Cca | Gca | 1 | 1 | B.1.243 | 0.00007 |
N | 364 | P364T | Cca | Aca | 1 | 1 | B.1.258 | 0.000067 |
N | 364 | P364R | cCa | cGa | 1 | 1 | B.1.258 | 0.000067 |
N | 364 | P364P | ccA | ccG | 1 | 1 | B.1.258.17 | 0.000104 |
N | 364 | P364S | Cca | Tca | 1 | 1 | B.1.258.17 | 0.000104 |
N | 364 | P364L | cCa | cTa | 1 | 1 | B.1.258.23 | 0.02381 |
N | 364 | P364S | Cca | Tca | 1 | 1 | B.1.279 | 0.000514 |
N | 364 | P364L | cCa | cTa | 1 | 1 | B.1.279 | 0.000514 |
N | 364 | P364L | cCa | cTa | 1 | 1 | B.1.301 | 0.005917 |
N | 364 | P364Q | cCa | cAa | 1 | 1 | B.1.350 | 0.002933 |
N | 364 | P364L | cCa | cTa | 1 | 1 | B.1.351.5 | 0.0006 |
N | 364 | P364T | Cca | Aca | 1 | 1 | B.1.36 | 0.000146 |
N | 364 | P364R | cCa | cGa | 1 | 1 | B.1.36.1 | 0.00114 |
N | 364 | P364L | cCa | cTa | 1 | 1 | B.1.36.8 | 0.001 |
N | 364 | P364S | Cca | Tca | 1 | 1 | B.1.369 | 0.000285 |
N | 364 | P364S | Cca | Tca | 1 | 1 | B.1.396 | 0.000706 |
N | 364 | P364T | Cca | Aca | 1 | 1 | B.1.400 | 0.000429 |
N | 364 | P364del | CCA | --- | 1 | 1 | B.1.415 | 0.014286 |
N | 364 | P364Q | cCa | cAa | 1 | 1 | B.1.427 | 0.00005 |
N | 364 | P364del | CCA | --- | 1 | 1 | B.1.429 | 0.000024 |
N | 364 | P364P | ccA | ccT | 1 | 1 | B.1.429 | 0.000024 |
N | 364 | P364Q | cCa | cAa | 1 | 1 | B.1.429 | 0.000024 |
N | 364 | P364L | cCa | cTa | 1 | 1 | B.1.434 | 0.052632 |
N | 364 | P364Y | CCA | TAC | 1 | 1 | B.1.437 | 0.020833 |
N | 364 | P364H | cCA | cAC | 1 | 1 | B.1.437 | 0.020833 |
N | 364 | P364N | CCA | AAC | 1 | 1 | B.1.437 | 0.020833 |
N | 364 | P364T | Cca | Aca | 1 | 1 | B.1.459 | 0.004082 |
N | 364 | P364P | ccA | ccG | 1 | 1 | B.1.470 | 0.001404 |
N | 364 | P364P | ccA | ccG | 1 | 1 | B.1.471 | 0.002732 |
N | 364 | P364Q | cCa | cAa | 1 | 1 | B.1.480 | 0.002488 |
N | 364 | P364L | cCa | cTa | 1 | 1 | B.1.499 | 0.00105 |
N | 364 | P364L | cCa | cTa | 1 | 1 | B.1.509 | 0.000866 |
N | 364 | P364L | cCa | cTa | 1 | 1 | B.1.517 | 0.000427 |
N | 364 | P364L | cCa | cTa | 1 | 1 | B.1.520 | 0.021739 |
N | 364 | P364S | Cca | Tca | 1 | 1 | B.1.524 | 0.001406 |
N | 364 | P364L | cCa | cTa | 1 | 1 | B.1.524 | 0.001406 |
N | 364 | P364del | CCA | --- | 1 | 1 | B.1.526 | 0.000024 |
N | 364 | P364T | Cca | Aca | 1 | 1 | B.1.526 | 0.000024 |
N | 364 | P364S | Cca | Tca | 1 | 1 | B.1.527 | 0.003704 |
N | 364 | P364L | cCa | cTa | 1 | 1 | B.1.561 | 0.000397 |
N | 364 | P364P | ccA | ccC | 1 | 1 | B.1.568 | 0.001111 |
N | 364 | P364S | Cca | Tca | 1 | 1 | B.1.589 | 0.007576 |
N | 364 | P364S | Cca | Tca | 1 | 1 | B.1.609 | 0.000479 |
N | 364 | P364L | cCa | cTa | 1 | 1 | B.1.612 | 0.002653 |
N | 364 | P364Q | cCa | cAa | 1 | 1 | B.1.617.2 | 0.000004 |
N | 364 | P364T | Cca | Aca | 1 | 1 | B.1.617.2 | 0.000004 |
N | 364 | P364L | cCa | cTa | 1 | 1 | B.1.617.3 | 0.002985 |
N | 364 | P364P | ccA | ccG | 1 | 1 | B.1.621 | 0.000089 |
N | 364 | P364L | cCa | cTa | 1 | 1 | B.1.627 | 0.00202 |
N | 364 | P364del | CCA | --- | 1 | 1 | B.1.630 | 0.005236 |
N | 364 | P364L | cCa | cTa | 1 | 1 | B.1.637 | 0.000073 |
N | 364 | P364L | cCa | cTa | 1 | 1 | B.1.8 | 0.001972 |
N | 364 | P364T | Cca | Aca | 1 | 1 | B.1.9 | 0.006173 |
N | 364 | P364Q | cCa | cAa | 1 | 1 | B.1.9 | 0.006173 |
N | 364 | P364K | CCa | AAa | 1 | 1 | B.1.9 | 0.006173 |
N | 364 | P364Q | cCa | cAa | 1 | 1 | B.20 | 0.023256 |
N | 364 | P364L | cCa | cTa | 1 | 1 | B.31 | 0.003731 |
N | 364 | P364L | cCa | cTa | 1 | 1 | B.4.4 | 0.018868 |
N | 364 | P364L | cCa | cTa | 1 | 1 | B.40 | 0.000364 |
N | 364 | P364S | Cca | Tca | 1 | 1 | C.18 | 0.002591 |
N | 364 | P364L | cCa | cTa | 1 | 1 | C.30 | 0.001727 |
N | 364 | P364K | CCa | AAa | 1 | 1 | C.37 | 0.000116 |
N | 364 | P364Q | cCa | cAa | 1 | 1 | C.37 | 0.000116 |
N | 364 | P364S | Cca | Tca | 1 | 1 | C.37 | 0.000116 |
N | 364 | P364T | Cca | Aca | 1 | 1 | C.37 | 0.000116 |
N | 364 | P364L | cCa | cTa | 1 | 1 | C.8 | 0.004464 |
N | 364 | P364S | Cca | Tca | 1 | 1 | D.2 | 0.000075 |
N | 364 | P364P | ccA | ccC | 1 | 1 | D.2 | 0.000075 |
N | 364 | P364L | cCa | cTa | 1 | 1 | D.2 | 0.000075 |
N | 364 | P364P | ccA | ccG | 1 | 1 | N.5 | 0.001767 |
N | 364 | P364P | ccA | ccC | 1 | 1 | P.1 | 0.000016 |
N | 364 | P364N | CCA | AAC | 1 | 1 | P.1 | 0.000016 |
N | 364 | P364Q | cCa | cAa | 1 | 1 | P.1 | 0.000016 |
N | 364 | P364H | cCA | cAC | 1 | 1 | P.1 | 0.000016 |
N | 364 | P364K | CCa | AAa | 1 | 1 | P.1 | 0.000016 |
N | 364 | P364S | Cca | Tca | 1 | 1 | P.1.12 | 0.000484 |
N | 364 | P364L | cCa | cTa | 1 | 1 | P.1.12 | 0.000484 |
N | 364 | P364P | ccA | ccT | 1 | 1 | P.1.14 | 0.000048 |
N | 364 | P364S | Cca | Tca | 1 | 1 | P.1.14 | 0.000048 |
N | 364 | P364S | Cca | Tca | 1 | 1 | P.1.15 | 0.000232 |
N | 364 | P364L | cCa | cTa | 1 | 1 | P.1.15 | 0.000232 |
N | 364 | P364S | Cca | Tca | 1 | 1 | P.2 | 0.000187 |
N | 364 | P364S | Cca | Tca | 1 | 1 | Q.2 | 0.000613 |
N | 364 | P364T | Cca | Aca | 1 | 1 | Q.8 | 0.000165 |
N | 364 | P364P | ccA | ccT | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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