CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 363 | F363F | syn | ttC | ttT | 55820 | 55820 | 1 | 29360-29362 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 363 | F363F | ttC | ttT | 55820 | 55820 | All | 0.010676 |
N | 363 | F363F | ttC | ttT | 35196 | 35196 | B.1.429 | 0.828122 |
N | 363 | F363F | ttC | ttT | 17254 | 17254 | B.1.427 | 0.871282 |
N | 363 | F363F | ttC | ttT | 778 | 778 | B.1 | 0.007126 |
N | 363 | F363F | ttC | ttT | 701 | 701 | AY.39 | 0.017323 |
N | 363 | F363F | ttC | ttT | 464 | 464 | B.1.1.7 | 0.000415 |
N | 363 | F363F | ttC | ttT | 133 | 133 | AY.4 | 0.000207 |
N | 363 | F363F | ttC | ttT | 132 | 132 | B.1.2 | 0.001162 |
N | 363 | F363F | ttC | ttT | 109 | 109 | B.1.617.2 | 0.00041 |
N | 363 | F363F | ttC | ttT | 78 | 78 | AY.92 | 0.022407 |
N | 363 | F363F | ttC | ttT | 68 | 68 | B.1.429.1 | 0.819277 |
N | 363 | F363F | ttC | ttT | 51 | 51 | B.1.637 | 0.003727 |
N | 363 | F363F | ttC | ttT | 49 | 49 | AY.25 | 0.000295 |
N | 363 | F363F | ttC | ttT | 42 | 42 | AY.14 | 0.003697 |
N | 363 | F363F | ttC | ttT | 42 | 42 | P.1 | 0.000662 |
N | 363 | F363F | ttC | ttT | 37 | 37 | B.1.596 | 0.003224 |
N | 363 | F363F | ttC | ttT | 35 | 35 | AY.44 | 0.000213 |
N | 363 | F363F | ttC | ttT | 34 | 34 | B.1.311 | 0.009336 |
N | 363 | F363F | ttC | ttT | 33 | 33 | B.1.1 | 0.000599 |
N | 363 | F363F | ttC | ttT | 30 | 30 | AY.35 | 0.006991 |
N | 363 | F363F | ttC | ttT | 30 | 30 | C.37 | 0.003482 |
N | 363 | F363F | ttC | ttT | 25 | 25 | AY.103 | 0.000155 |
N | 363 | F363F | ttC | ttT | 24 | 24 | AY.3 | 0.000239 |
N | 363 | F363F | ttC | ttT | 22 | 22 | B.1.1.337 | 0.079137 |
N | 363 | F363F | ttC | ttT | 22 | 22 | B.1.595 | 0.005741 |
N | 363 | F363F | ttC | ttT | 21 | 21 | B.1.621 | 0.001859 |
N | 363 | F363F | ttC | ttT | 18 | 18 | B.1.239 | 0.021978 |
N | 363 | F363F | ttC | ttT | 17 | 17 | B.1.544 | 0.10241 |
N | 363 | F363F | ttC | ttT | 16 | 16 | B.1.561 | 0.006352 |
N | 363 | F363F | ttC | ttT | 14 | 14 | B.1.1.70 | 0.004775 |
N | 363 | F363F | ttC | ttT | 13 | 13 | B.1.367 | 0.010301 |
N | 363 | F363F | ttC | ttT | 13 | 13 | B.1.575.1 | 0.031707 |
N | 363 | F363F | ttC | ttT | 11 | 11 | AY.43 | 0.000049 |
N | 363 | F363F | ttC | ttT | 11 | 11 | B.1.1.220 | 0.020446 |
N | 363 | F363F | ttC | ttT | 10 | 10 | B.1.1.416 | 0.00905 |
N | 363 | F363F | ttC | ttT | 9 | 9 | B.1.618 | 0.03629 |
N | 363 | F363F | ttC | ttT | 8 | 8 | AY.99.2 | 0.000737 |
N | 363 | F363F | ttC | ttT | 7 | 7 | AY.119 | 0.000247 |
N | 363 | F363F | ttC | ttT | 7 | 7 | B.1.336 | 0.017073 |
N | 363 | F363F | ttC | ttT | 7 | 7 | B.1.351 | 0.000208 |
N | 363 | F363F | ttC | ttT | 6 | 6 | A.2.5.2 | 0.009434 |
N | 363 | F363F | ttC | ttT | 6 | 6 | AY.54 | 0.000572 |
N | 363 | F363F | ttC | ttT | 6 | 6 | B.1.221 | 0.000426 |
N | 363 | F363F | ttC | ttT | 6 | 6 | B.1.623 | 0.003219 |
N | 363 | F363F | ttC | ttT | 5 | 5 | AY.13 | 0.000805 |
N | 363 | F363F | ttC | ttT | 5 | 5 | AY.29 | 0.000079 |
N | 363 | F363F | ttC | ttT | 5 | 5 | AY.75 | 0.00028 |
N | 363 | F363F | ttC | ttT | 5 | 5 | B | 0.000639 |
N | 363 | F363F | ttC | ttT | 5 | 5 | B.1.1.519 | 0.000199 |
N | 363 | F363F | ttC | ttT | 5 | 5 | B.1.157 | 0.014925 |
N | 363 | F363F | ttC | ttT | 5 | 5 | B.1.609 | 0.002397 |
N | 363 | F363F | ttC | ttT | 5 | 5 | P.1.15 | 0.001162 |
N | 363 | F363F | ttC | ttT | 4 | 4 | AY.20 | 0.000155 |
N | 363 | F363F | ttC | ttT | 4 | 4 | AY.33 | 0.000267 |
N | 363 | F363F | ttC | ttT | 4 | 4 | B.1.1.192 | 0.009238 |
N | 363 | F363F | ttC | ttT | 4 | 4 | B.1.324 | 0.006421 |
N | 363 | F363F | ttC | ttT | 4 | 4 | B.1.526 | 0.000094 |
N | 363 | F363F | ttC | ttT | 4 | 4 | B.1.621.1 | 0.002023 |
N | 363 | F363F | ttC | ttT | 4 | 4 | P.1.14 | 0.000191 |
N | 363 | F363F | ttC | ttT | 3 | 3 | A.2.5 | 0.001497 |
N | 363 | F363F | ttC | ttT | 3 | 3 | AY.1 | 0.001187 |
N | 363 | F363F | ttC | ttT | 3 | 3 | AY.102 | 0.00008 |
N | 363 | F363F | ttC | ttT | 3 | 3 | AY.26 | 0.000085 |
N | 363 | F363F | ttC | ttT | 3 | 3 | AY.46 | 0.000312 |
N | 363 | F363F | ttC | ttT | 3 | 3 | AY.5 | 0.000062 |
N | 363 | F363F | ttC | ttT | 3 | 3 | AY.9.1 | 0.000251 |
N | 363 | F363F | ttC | ttT | 3 | 3 | B.1.1.176 | 0.001318 |
N | 363 | F363F | ttC | ttT | 3 | 3 | B.1.1.216 | 0.002671 |
N | 363 | F363F | ttC | ttT | 3 | 3 | B.1.1.28 | 0.000934 |
N | 363 | F363F | ttC | ttT | 3 | 3 | B.1.1.302 | 0.006224 |
N | 363 | F363F | ttC | ttT | 3 | 3 | B.1.243 | 0.000209 |
N | 363 | F363F | ttC | ttT | 3 | 3 | B.1.258 | 0.0002 |
N | 363 | F363F | ttC | ttT | 3 | 3 | B.1.375 | 0.002459 |
N | 363 | F363F | ttC | ttT | 3 | 3 | B.1.396 | 0.002117 |
N | 363 | F363F | ttC | ttT | 3 | 3 | B.1.525 | 0.000339 |
N | 363 | F363F | ttC | ttT | 3 | 3 | B.1.580 | 0.012195 |
N | 363 | F363F | ttC | ttT | 3 | 3 | D.2 | 0.000225 |
N | 363 | F363F | ttC | ttT | 2 | 2 | 0.111111 | |
N | 363 | F363F | ttC | ttT | 2 | 2 | A.2 | 0.001324 |
N | 363 | F363F | ttC | ttT | 2 | 2 | AY.16 | 0.000759 |
N | 363 | F363F | ttC | ttT | 2 | 2 | AY.6 | 0.000082 |
N | 363 | F363F | ttC | ttT | 2 | 2 | AY.84 | 0.000875 |
N | 363 | F363F | ttC | ttT | 2 | 2 | B.1.1.269 | 0.002706 |
N | 363 | F363F | ttC | ttT | 2 | 2 | B.1.1.371 | 0.020833 |
N | 363 | F363F | ttC | ttT | 2 | 2 | B.1.1.507 | 0.017391 |
N | 363 | F363F | ttC | ttT | 2 | 2 | B.1.177.12 | 0.000303 |
N | 363 | F363F | ttC | ttT | 2 | 2 | B.1.281 | 0.043478 |
N | 363 | F363F | ttC | ttT | 2 | 2 | B.1.397 | 0.009709 |
N | 363 | F363F | ttC | ttT | 2 | 2 | B.1.425 | 0.005988 |
N | 363 | F363F | ttC | ttT | 2 | 2 | B.1.470 | 0.002809 |
N | 363 | F363F | ttC | ttT | 2 | 2 | B.1.497 | 0.00063 |
N | 363 | F363F | ttC | ttT | 2 | 2 | B.1.576 | 0.001813 |
N | 363 | F363F | ttC | ttT | 2 | 2 | B.1.587 | 0.003795 |
N | 363 | F363F | ttC | ttT | 2 | 2 | B.1.633 | 0.083333 |
N | 363 | F363F | ttC | ttT | 2 | 2 | B.1.94 | 0.054054 |
N | 363 | F363F | ttC | ttT | 2 | 2 | P.1.7 | 0.000639 |
N | 363 | F363F | ttC | ttT | 2 | 2 | P.3 | 0.00319 |
N | 363 | F363F | ttC | ttT | 2 | 2 | Q.8 | 0.00033 |
N | 363 | F363F | ttC | ttT | 1 | 1 | AP.1 | 0.001502 |
N | 363 | F363F | ttC | ttT | 1 | 1 | AU.1 | 0.001266 |
N | 363 | F363F | ttC | ttT | 1 | 1 | AY.100 | 0.000046 |
N | 363 | F363F | ttC | ttT | 1 | 1 | AY.101 | 0.00049 |
N | 363 | F363F | ttC | ttT | 1 | 1 | AY.108 | 0.001103 |
N | 363 | F363F | ttC | ttT | 1 | 1 | AY.110 | 0.000113 |
N | 363 | F363F | ttC | ttT | 1 | 1 | AY.116.1 | 0.000311 |
N | 363 | F363F | ttC | ttT | 1 | 1 | AY.12 | 0.000316 |
N | 363 | F363F | ttC | ttT | 1 | 1 | AY.16.1 | 0.00047 |
N | 363 | F363F | ttC | ttT | 1 | 1 | AY.2 | 0.000356 |
N | 363 | F363F | ttC | ttT | 1 | 1 | AY.23 | 0.00007 |
N | 363 | F363F | ttC | ttT | 1 | 1 | AY.24 | 0.000431 |
N | 363 | F363F | ttC | ttT | 1 | 1 | AY.41 | 0.000294 |
N | 363 | F363F | ttC | ttT | 1 | 1 | AY.42 | 0.00004 |
N | 363 | F363F | ttC | ttT | 1 | 1 | AY.45 | 0.000122 |
N | 363 | F363F | ttC | ttT | 1 | 1 | AY.46.6 | 0.000072 |
N | 363 | F363F | ttC | ttT | 1 | 1 | AY.48 | 0.000465 |
N | 363 | F363F | ttC | ttT | 1 | 1 | AY.5.4 | 0.000277 |
N | 363 | F363F | ttC | ttT | 1 | 1 | AY.61 | 0.000105 |
N | 363 | F363F | ttC | ttT | 1 | 1 | AY.7.2 | 0.000559 |
N | 363 | F363F | ttC | ttT | 1 | 1 | AY.86 | 0.00083 |
N | 363 | F363F | ttC | ttT | 1 | 1 | AY.95 | 0.000761 |
N | 363 | F363F | ttC | ttT | 1 | 1 | AY.98.1 | 0.000048 |
N | 363 | F363F | ttC | ttT | 1 | 1 | B.1.1.159 | 0.004673 |
N | 363 | F363F | ttC | ttT | 1 | 1 | B.1.1.222 | 0.000204 |
N | 363 | F363F | ttC | ttT | 1 | 1 | B.1.1.27 | 0.00565 |
N | 363 | F363F | ttC | ttT | 1 | 1 | B.1.1.348 | 0.000796 |
N | 363 | F363F | ttC | ttT | 1 | 1 | B.1.1.432 | 0.001266 |
N | 363 | F363F | ttC | ttT | 1 | 1 | B.1.1.434 | 0.000349 |
N | 363 | F363F | ttC | ttT | 1 | 1 | B.1.1.464 | 0.001473 |
N | 363 | F363F | ttC | ttT | 1 | 1 | B.1.119 | 0.010526 |
N | 363 | F363F | ttC | ttT | 1 | 1 | B.1.126 | 0.001276 |
N | 363 | F363F | ttC | ttT | 1 | 1 | B.1.128 | 0.000635 |
N | 363 | F363F | ttC | ttT | 1 | 1 | B.1.160 | 0.000031 |
N | 363 | F363F | ttC | ttT | 1 | 1 | B.1.177.56 | 0.000668 |
N | 363 | F363F | ttC | ttT | 1 | 1 | B.1.177.57 | 0.000281 |
N | 363 | F363F | ttC | ttT | 1 | 1 | B.1.234 | 0.000132 |
N | 363 | F363F | ttC | ttT | 1 | 1 | B.1.258.3 | 0.001675 |
N | 363 | F363F | ttC | ttT | 1 | 1 | B.1.280 | 0.007143 |
N | 363 | F363F | ttC | ttT | 1 | 1 | B.1.289 | 0.00266 |
N | 363 | F363F | ttC | ttT | 1 | 1 | B.1.298 | 0.002114 |
N | 363 | F363F | ttC | ttT | 1 | 1 | B.1.349 | 0.000715 |
N | 363 | F363F | ttC | ttT | 1 | 1 | B.1.350 | 0.002933 |
N | 363 | F363F | ttC | ttT | 1 | 1 | B.1.356 | 0.001727 |
N | 363 | F363F | ttC | ttT | 1 | 1 | B.1.437 | 0.020833 |
N | 363 | F363F | ttC | ttT | 1 | 1 | B.1.441 | 0.009615 |
N | 363 | F363F | ttC | ttT | 1 | 1 | B.1.451 | 0.008197 |
N | 363 | F363F | ttC | ttT | 1 | 1 | B.1.466.2 | 0.000391 |
N | 363 | F363F | ttC | ttT | 1 | 1 | B.1.564 | 0.000426 |
N | 363 | F363F | ttC | ttT | 1 | 1 | B.1.69 | 0.035714 |
N | 363 | F363F | ttC | ttT | 1 | 1 | B.1.93 | 0.000934 |
N | 363 | F363F | ttC | ttT | 1 | 1 | B.3 | 0.000831 |
N | 363 | F363F | ttC | ttT | 1 | 1 | B.4.1 | 0.018868 |
N | 363 | F363F | ttC | ttT | 1 | 1 | C.2 | 0.016129 |
N | 363 | F363F | ttC | ttT | 1 | 1 | C.28 | 0.04 |
N | 363 | F363F | ttC | ttT | 1 | 1 | C.37.1 | 0.002618 |
N | 363 | F363F | ttC | ttT | 1 | 1 | N.4 | 0.004255 |
N | 363 | F363F | ttC | ttT | 1 | 1 | P.1.1 | 0.000318 |
N | 363 | F363F | ttC | ttT | 1 | 1 | P.1.10 | 0.000269 |
N | 363 | F363F | ttC | ttT | 1 | 1 | P.1.12 | 0.000484 |
N | 363 | F363F | ttC | ttT | 1 | 1 | P.1.17 | 0.000162 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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