CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 360 | Y360Y | syn | taC | taT | 10965 | 10965 | 1 | 29351-29353 | |
N | 360 | Y360H | nonsyn | Tac | Cac | 104 | 103 | 0.990385 | 29351-29353 | |
N | 360 | Y360H | nonsyn | TaC | CaT | 104 | 1 | 0.00961538 | 29351-29353 | |
N | 360 | Y360X | nonsyn | taC | taA | 29 | 28 | 0.965517 | 29351-29353 | |
N | 360 | Y360X | nonsyn | tAC | tGA | 29 | 1 | 0.0344828 | 29351-29353 | |
N | 360 | Y360del | del | TAC | --- | 10 | 10 | 1 | 29351-29353 | |
N | 360 | Y360F | nonsyn | tAc | tTc | 8 | 8 | 1 | 29351-29353 | |
N | 360 | Y360C | nonsyn | tAc | tGc | 4 | 4 | 1 | 29351-29353 | |
N | 360 | Y360S | nonsyn | tAc | tCc | 4 | 4 | 1 | 29351-29353 | |
N | 360 | Y360del1 | del | taC | ta- | 4 | 2 | 0.5 | 29351-29353 | |
N | 360 | Y360del1 | del | tAc | t-c | 4 | 2 | 0.5 | 29351-29353 | |
N | 360 | Y360N | nonsyn | Tac | Aac | 2 | 2 | 1 | 29351-29353 | |
N | 360 | Y360del2 | del | tAC | t-- | 2 | 2 | 1 | 29351-29353 | |
N | 360 | Y360L | nonsyn | TAC | CTA | 1 | 1 | 1 | 29351-29353 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 360 | Y360Y | taC | taT | 10965 | 10965 | All | 0.002097 |
N | 360 | Y360Y | taC | taT | 3118 | 3118 | B.1.1.214 | 0.172915 |
N | 360 | Y360Y | taC | taT | 2031 | 2031 | B.1.1.7 | 0.001818 |
N | 360 | Y360Y | taC | taT | 738 | 738 | AY.4 | 0.001149 |
N | 360 | Y360Y | taC | taT | 405 | 405 | B.1.617.2 | 0.001525 |
N | 360 | Y360Y | taC | taT | 229 | 229 | B.1.637 | 0.016734 |
N | 360 | Y360Y | taC | taT | 219 | 219 | B.1.427 | 0.011059 |
N | 360 | Y360Y | taC | taT | 216 | 216 | AY.103 | 0.001341 |
N | 360 | Y360Y | taC | taT | 215 | 215 | AY.44 | 0.001309 |
N | 360 | Y360Y | taC | taT | 212 | 212 | B.1.2 | 0.001867 |
N | 360 | Y360Y | taC | taT | 211 | 211 | AY.26 | 0.005973 |
N | 360 | Y360Y | taC | taT | 172 | 172 | B.1.1.196 | 0.982857 |
N | 360 | Y360Y | taC | taT | 153 | 153 | B.1.23 | 0.927273 |
N | 360 | Y360Y | taC | taT | 150 | 150 | B.1.1 | 0.002721 |
N | 360 | Y360Y | taC | taT | 141 | 141 | B.1.526 | 0.003314 |
N | 360 | Y360Y | taC | taT | 110 | 110 | AY.25 | 0.000662 |
N | 360 | Y360Y | taC | taT | 109 | 109 | AY.42 | 0.004385 |
N | 360 | Y360H | Tac | Cac | 103 | 104 | All | 0.00002 |
N | 360 | Y360H | TaC | CaT | 1 | 104 | All | 0 |
N | 360 | Y360Y | taC | taT | 97 | 97 | AY.43 | 0.00043 |
N | 360 | Y360Y | taC | taT | 85 | 85 | B.1 | 0.000779 |
N | 360 | Y360Y | taC | taT | 84 | 84 | P.1 | 0.001323 |
N | 360 | Y360Y | taC | taT | 82 | 82 | AY.47 | 0.002551 |
N | 360 | Y360Y | taC | taT | 81 | 81 | AY.4.5 | 0.008707 |
N | 360 | Y360Y | taC | taT | 72 | 72 | B.1.160 | 0.002246 |
N | 360 | Y360Y | taC | taT | 71 | 71 | AY.9 | 0.004799 |
N | 360 | Y360Y | taC | taT | 70 | 70 | AY.41 | 0.020576 |
N | 360 | Y360Y | taC | taT | 66 | 66 | B.1.429 | 0.001553 |
N | 360 | Y360Y | taC | taT | 56 | 56 | AY.6 | 0.002303 |
N | 360 | Y360Y | taC | taT | 52 | 52 | AY.39 | 0.001285 |
N | 360 | Y360Y | taC | taT | 50 | 50 | AY.5 | 0.001032 |
N | 360 | Y360Y | taC | taT | 50 | 50 | P.1.17 | 0.008088 |
N | 360 | Y360Y | taC | taT | 48 | 48 | AY.120 | 0.001785 |
N | 360 | Y360Y | taC | taT | 43 | 43 | B.1.596 | 0.003747 |
N | 360 | Y360Y | taC | taT | 40 | 40 | B.1.1.70 | 0.013643 |
N | 360 | Y360Y | taC | taT | 40 | 40 | R.1 | 0.0036 |
N | 360 | Y360Y | taC | taT | 38 | 38 | B.1.177.44 | 0.01972 |
N | 360 | Y360Y | taC | taT | 38 | 38 | B.1.258 | 0.002529 |
N | 360 | Y360Y | taC | taT | 36 | 36 | AY.3 | 0.000358 |
N | 360 | Y360Y | taC | taT | 35 | 35 | AY.100 | 0.00161 |
N | 360 | Y360Y | taC | taT | 33 | 33 | B.1.621.1 | 0.016692 |
N | 360 | Y360Y | taC | taT | 33 | 33 | C.37 | 0.00383 |
N | 360 | Y360Y | taC | taT | 32 | 32 | AY.119 | 0.00113 |
N | 360 | Y360Y | taC | taT | 31 | 31 | B.1.1.519 | 0.001231 |
N | 360 | Y360Y | taC | taT | 30 | 30 | AY.3.1 | 0.002558 |
N | 360 | Y360X | taC | taA | 28 | 29 | All | 0.000005 |
N | 360 | Y360X | tAC | tGA | 1 | 29 | All | 0 |
N | 360 | Y360Y | taC | taT | 29 | 29 | AY.102 | 0.000769 |
N | 360 | Y360Y | taC | taT | 29 | 29 | B.1.177 | 0.000382 |
N | 360 | Y360Y | taC | taT | 28 | 28 | AY.7 | 0.005488 |
N | 360 | Y360H | Tac | Cac | 27 | 27 | AY.4 | 0.000042 |
N | 360 | Y360Y | taC | taT | 26 | 26 | AY.117 | 0.002197 |
N | 360 | Y360Y | taC | taT | 26 | 26 | AY.39.1 | 0.00103 |
N | 360 | Y360H | Tac | Cac | 25 | 25 | B.1.1.7 | 0.000022 |
N | 360 | Y360Y | taC | taT | 22 | 22 | AY.20 | 0.000855 |
N | 360 | Y360Y | taC | taT | 21 | 21 | AY.33 | 0.001402 |
N | 360 | Y360Y | taC | taT | 21 | 21 | AY.61 | 0.0022 |
N | 360 | Y360Y | taC | taT | 21 | 21 | B.1.575 | 0.006371 |
N | 360 | Y360Y | taC | taT | 21 | 21 | Q.4 | 0.00955 |
N | 360 | Y360Y | taC | taT | 20 | 20 | B.1.1.178 | 0.833333 |
N | 360 | Y360Y | taC | taT | 20 | 20 | B.1.466.2 | 0.007825 |
N | 360 | Y360Y | taC | taT | 19 | 19 | B.1.497 | 0.00598 |
N | 360 | Y360Y | taC | taT | 18 | 18 | B.1.351 | 0.000535 |
N | 360 | Y360Y | taC | taT | 17 | 17 | B.1.1.280 | 0.052469 |
N | 360 | Y360Y | taC | taT | 16 | 16 | B.1.424 | 0.129032 |
N | 360 | Y360Y | taC | taT | 16 | 16 | Q.8 | 0.002639 |
N | 360 | Y360Y | taC | taT | 15 | 15 | AY.29 | 0.000237 |
N | 360 | Y360Y | taC | taT | 15 | 15 | P.1.14 | 0.000717 |
N | 360 | Y360Y | taC | taT | 14 | 14 | AY.109 | 0.010355 |
N | 360 | Y360Y | taC | taT | 14 | 14 | AY.4.2 | 0.000304 |
N | 360 | Y360Y | taC | taT | 13 | 13 | AY.9.2 | 0.000477 |
N | 360 | Y360Y | taC | taT | 13 | 13 | B.1.525 | 0.001471 |
N | 360 | Y360Y | taC | taT | 13 | 13 | B.1.588 | 0.011829 |
N | 360 | Y360Y | taC | taT | 13 | 13 | P.1.15 | 0.00302 |
N | 360 | Y360Y | taC | taT | 12 | 12 | AY.85 | 0.005126 |
N | 360 | Y360Y | taC | taT | 12 | 12 | AY.98.1 | 0.000581 |
N | 360 | Y360Y | taC | taT | 12 | 12 | B.1.489 | 0.521739 |
N | 360 | Y360Y | taC | taT | 11 | 11 | B.1.1.284 | 0.001181 |
N | 360 | Y360Y | taC | taT | 11 | 11 | B.1.527 | 0.040741 |
N | 360 | Y360Y | taC | taT | 11 | 11 | B.1.617.1 | 0.001419 |
N | 360 | Y360del | TAC | --- | 10 | 10 | All | 0.000002 |
N | 360 | Y360H | Tac | Cac | 10 | 10 | AY.25 | 0.00006 |
N | 360 | Y360Y | taC | taT | 10 | 10 | AY.75.1 | 0.001803 |
N | 360 | Y360Y | taC | taT | 10 | 10 | B.1.243 | 0.000696 |
N | 360 | Y360Y | taC | taT | 10 | 10 | B.1.369 | 0.002852 |
N | 360 | Y360Y | taC | taT | 9 | 9 | A | 0.003483 |
N | 360 | Y360Y | taC | taT | 9 | 9 | AE.8 | 0.004401 |
N | 360 | Y360Y | taC | taT | 9 | 9 | AY.118 | 0.000564 |
N | 360 | Y360Y | taC | taT | 9 | 9 | AY.38 | 0.004493 |
N | 360 | Y360Y | taC | taT | 9 | 9 | AY.75 | 0.000504 |
N | 360 | Y360Y | taC | taT | 9 | 9 | B.1.177.81 | 0.001704 |
N | 360 | Y360Y | taC | taT | 9 | 9 | B.1.311 | 0.002471 |
N | 360 | Y360F | tAc | tTc | 8 | 8 | All | 0.000002 |
N | 360 | Y360X | taC | taA | 8 | 8 | AY.46 | 0.000833 |
N | 360 | Y360Y | taC | taT | 8 | 8 | B.1.1.368 | 0.024691 |
N | 360 | Y360Y | taC | taT | 8 | 8 | B.1.279 | 0.004109 |
N | 360 | Y360Y | taC | taT | 8 | 8 | B.1.346 | 0.010485 |
N | 360 | Y360Y | taC | taT | 8 | 8 | B.1.36 | 0.001167 |
N | 360 | Y360Y | taC | taT | 8 | 8 | B.1.36.29 | 0.004139 |
N | 360 | Y360Y | taC | taT | 8 | 8 | B.1.409 | 0.00625 |
N | 360 | Y360Y | taC | taT | 7 | 7 | AY.97 | 0.011905 |
N | 360 | Y360Y | taC | taT | 7 | 7 | B.1.280 | 0.05 |
N | 360 | Y360Y | taC | taT | 7 | 7 | B.1.351.2 | 0.002118 |
N | 360 | Y360Y | taC | taT | 7 | 7 | B.1.564 | 0.002981 |
N | 360 | Y360Y | taC | taT | 7 | 7 | D.2 | 0.000525 |
N | 360 | Y360Y | taC | taT | 7 | 7 | P.1.6 | 0.013619 |
N | 360 | Y360Y | taC | taT | 6 | 6 | AY.113 | 0.000854 |
N | 360 | Y360Y | taC | taT | 6 | 6 | AY.14 | 0.000528 |
N | 360 | Y360Y | taC | taT | 6 | 6 | AY.23 | 0.000418 |
N | 360 | Y360Y | taC | taT | 6 | 6 | AY.46 | 0.000624 |
N | 360 | Y360Y | taC | taT | 6 | 6 | AY.48 | 0.002791 |
N | 360 | Y360Y | taC | taT | 6 | 6 | AY.59 | 0.003178 |
N | 360 | Y360Y | taC | taT | 6 | 6 | B.1.1.222 | 0.001224 |
N | 360 | Y360Y | taC | taT | 6 | 6 | B.1.177.82 | 0.002864 |
N | 360 | Y360Y | taC | taT | 5 | 5 | AY.114 | 0.001156 |
N | 360 | Y360Y | taC | taT | 5 | 5 | AY.27 | 0.000324 |
N | 360 | Y360Y | taC | taT | 5 | 5 | AY.34 | 0.000485 |
N | 360 | Y360Y | taC | taT | 5 | 5 | AY.4.3 | 0.004209 |
N | 360 | Y360H | Tac | Cac | 5 | 5 | AY.43 | 0.000022 |
N | 360 | Y360H | Tac | Cac | 4 | 5 | AY.44 | 0.000024 |
N | 360 | Y360H | TaC | CaT | 1 | 5 | AY.44 | 0.000006 |
N | 360 | Y360Y | taC | taT | 5 | 5 | AY.64 | 0.002976 |
N | 360 | Y360Y | taC | taT | 5 | 5 | AY.99.2 | 0.000461 |
N | 360 | Y360Y | taC | taT | 5 | 5 | B.1.1.1 | 0.001633 |
N | 360 | Y360Y | taC | taT | 5 | 5 | B.1.1.67 | 0.022831 |
N | 360 | Y360Y | taC | taT | 5 | 5 | B.1.177.60 | 0.001092 |
N | 360 | Y360Y | taC | taT | 5 | 5 | B.1.411 | 0.018519 |
N | 360 | Y360Y | taC | taT | 5 | 5 | B.1.544 | 0.03012 |
N | 360 | Y360Y | taC | taT | 4 | 4 | A.1 | 0.001127 |
N | 360 | Y360S | tAc | tCc | 4 | 4 | All | 0.000001 |
N | 360 | Y360C | tAc | tGc | 4 | 4 | All | 0.000001 |
N | 360 | Y360del1 | taC | ta- | 2 | 4 | All | 0 |
N | 360 | Y360del1 | tAc | t-c | 2 | 4 | All | 0 |
N | 360 | Y360Y | taC | taT | 4 | 4 | AY.45 | 0.000487 |
N | 360 | Y360X | taC | taA | 4 | 4 | AY.46.1 | 0.004107 |
N | 360 | Y360Y | taC | taT | 4 | 4 | AY.5.3 | 0.00135 |
N | 360 | Y360Y | taC | taT | 4 | 4 | AY.9.2.1 | 0.007905 |
N | 360 | Y360Y | taC | taT | 4 | 4 | AY.99 | 0.004197 |
N | 360 | Y360Y | taC | taT | 4 | 4 | B.1.1.153 | 0.004381 |
N | 360 | Y360Y | taC | taT | 4 | 4 | B.1.1.25 | 0.002274 |
N | 360 | Y360Y | taC | taT | 4 | 4 | B.1.1.28 | 0.001245 |
N | 360 | Y360Y | taC | taT | 4 | 4 | B.1.1.294 | 0.005063 |
N | 360 | Y360Y | taC | taT | 4 | 4 | B.1.1.317 | 0.001647 |
N | 360 | Y360Y | taC | taT | 4 | 4 | B.1.1.451 | 0.153846 |
N | 360 | Y360Y | taC | taT | 4 | 4 | B.1.147 | 0.003023 |
N | 360 | Y360Y | taC | taT | 4 | 4 | B.1.177.73 | 0.002265 |
N | 360 | Y360X | taC | taA | 4 | 4 | B.1.617.2 | 0.000015 |
N | 360 | Y360Y | taC | taT | 4 | 4 | C.35 | 0.003096 |
N | 360 | Y360Y | taC | taT | 4 | 4 | P.2 | 0.000747 |
N | 360 | Y360Y | taC | taT | 3 | 3 | A.2.5 | 0.001497 |
N | 360 | Y360Y | taC | taT | 3 | 3 | AY.107 | 0.001398 |
N | 360 | Y360Y | taC | taT | 3 | 3 | AY.121 | 0.000406 |
N | 360 | Y360Y | taC | taT | 3 | 3 | AY.13 | 0.000483 |
N | 360 | Y360Y | taC | taT | 3 | 3 | AY.29.1 | 0.000662 |
N | 360 | Y360Y | taC | taT | 3 | 3 | AY.35 | 0.000699 |
N | 360 | Y360Y | taC | taT | 3 | 3 | AY.4.2.1 | 0.000447 |
N | 360 | Y360Y | taC | taT | 3 | 3 | AY.46.6 | 0.000217 |
N | 360 | Y360H | Tac | Cac | 3 | 3 | AY.7.2 | 0.001678 |
N | 360 | Y360Y | taC | taT | 3 | 3 | AY.80 | 0.003386 |
N | 360 | Y360Y | taC | taT | 3 | 3 | B.1.1.398 | 0.009677 |
N | 360 | Y360Y | taC | taT | 3 | 3 | B.1.1.420 | 0.003018 |
N | 360 | Y360Y | taC | taT | 3 | 3 | B.1.1.524 | 0.0625 |
N | 360 | Y360Y | taC | taT | 3 | 3 | B.1.1.63 | 0.001157 |
N | 360 | Y360Y | taC | taT | 3 | 3 | B.1.160.15 | 0.014851 |
N | 360 | Y360Y | taC | taT | 3 | 3 | B.1.241 | 0.002435 |
N | 360 | Y360Y | taC | taT | 3 | 3 | B.1.243.2 | 0.043478 |
N | 360 | Y360Y | taC | taT | 3 | 3 | B.1.258.7 | 0.005736 |
N | 360 | Y360Y | taC | taT | 3 | 3 | B.1.36.25 | 0.006623 |
N | 360 | Y360Y | taC | taT | 3 | 3 | B.1.36.8 | 0.003 |
N | 360 | Y360Y | taC | taT | 3 | 3 | B.1.551 | 0.003871 |
N | 360 | Y360Y | taC | taT | 3 | 3 | B.1.595 | 0.000783 |
N | 360 | Y360Y | taC | taT | 3 | 3 | B.1.620 | 0.002838 |
N | 360 | Y360Y | taC | taT | 3 | 3 | B.1.621 | 0.000266 |
N | 360 | Y360Y | taC | taT | 3 | 3 | B.1.623 | 0.001609 |
N | 360 | Y360del | TAC | --- | 2 | 2 | 0.111111 | |
N | 360 | Y360del2 | tAC | t-- | 2 | 2 | 0.111111 | |
N | 360 | Y360del2 | tAC | t-- | 2 | 2 | All | 0 |
N | 360 | Y360N | Tac | Aac | 2 | 2 | All | 0 |
N | 360 | Y360X | tAC | tGA | 1 | 2 | AY.103 | 0.000006 |
N | 360 | Y360X | taC | taA | 1 | 2 | AY.103 | 0.000006 |
N | 360 | Y360Y | taC | taT | 2 | 2 | AY.12 | 0.000632 |
N | 360 | Y360Y | taC | taT | 2 | 2 | AY.16 | 0.000759 |
N | 360 | Y360H | Tac | Cac | 2 | 2 | AY.20 | 0.000078 |
N | 360 | Y360Y | taC | taT | 2 | 2 | AY.24 | 0.000862 |
N | 360 | Y360F | tAc | tTc | 2 | 2 | AY.25 | 0.000012 |
N | 360 | Y360H | Tac | Cac | 2 | 2 | AY.4.2 | 0.000043 |
N | 360 | Y360X | taC | taA | 2 | 2 | AY.43 | 0.000009 |
N | 360 | Y360F | tAc | tTc | 2 | 2 | AY.43 | 0.000009 |
N | 360 | Y360Y | taC | taT | 2 | 2 | AY.54 | 0.000191 |
N | 360 | Y360Y | taC | taT | 2 | 2 | AY.60 | 0.001876 |
N | 360 | Y360Y | taC | taT | 2 | 2 | AY.71 | 0.00095 |
N | 360 | Y360Y | taC | taT | 2 | 2 | B | 0.000256 |
N | 360 | Y360H | Tac | Cac | 2 | 2 | B.1 | 0.000018 |
N | 360 | Y360del1 | taC | ta- | 1 | 2 | B.1 | 0.000009 |
N | 360 | Y360del1 | tAc | t-c | 1 | 2 | B.1 | 0.000009 |
N | 360 | Y360Y | taC | taT | 2 | 2 | B.1.1.170 | 0.002494 |
N | 360 | Y360Y | taC | taT | 2 | 2 | B.1.1.207 | 0.002364 |
N | 360 | Y360Y | taC | taT | 2 | 2 | B.1.1.269 | 0.002706 |
N | 360 | Y360Y | taC | taT | 2 | 2 | B.1.1.304 | 0.005618 |
N | 360 | Y360Y | taC | taT | 2 | 2 | B.1.1.348 | 0.001592 |
N | 360 | Y360Y | taC | taT | 2 | 2 | B.1.1.362 | 0.011236 |
N | 360 | Y360Y | taC | taT | 2 | 2 | B.1.1.409 | 0.005666 |
N | 360 | Y360Y | taC | taT | 2 | 2 | B.1.1.434 | 0.000697 |
N | 360 | Y360Y | taC | taT | 2 | 2 | B.1.177.4 | 0.000422 |
N | 360 | Y360Y | taC | taT | 2 | 2 | B.1.177.40 | 0.010309 |
N | 360 | Y360Y | taC | taT | 2 | 2 | B.1.177.53 | 0.004785 |
N | 360 | Y360Y | taC | taT | 2 | 2 | B.1.177.86 | 0.000367 |
N | 360 | Y360Y | taC | taT | 2 | 2 | B.1.177.87 | 0.001456 |
N | 360 | Y360Y | taC | taT | 2 | 2 | B.1.351.3 | 0.001753 |
N | 360 | Y360Y | taC | taT | 2 | 2 | B.1.36.17 | 0.000988 |
N | 360 | Y360Y | taC | taT | 2 | 2 | B.1.36.31 | 0.003503 |
N | 360 | Y360Y | taC | taT | 2 | 2 | B.1.408 | 0.00738 |
N | 360 | Y360Y | taC | taT | 2 | 2 | B.1.438.1 | 0.000215 |
N | 360 | Y360Y | taC | taT | 2 | 2 | B.1.459 | 0.008163 |
N | 360 | Y360Y | taC | taT | 2 | 2 | B.1.470 | 0.002809 |
N | 360 | Y360Y | taC | taT | 2 | 2 | B.1.499 | 0.002101 |
N | 360 | Y360Y | taC | taT | 2 | 2 | B.1.538 | 0.016129 |
N | 360 | Y360Y | taC | taT | 2 | 2 | B.1.546 | 0.007407 |
N | 360 | Y360Y | taC | taT | 2 | 2 | B.1.582 | 0.000981 |
N | 360 | Y360Y | taC | taT | 2 | 2 | B.1.609 | 0.000959 |
N | 360 | Y360H | Tac | Cac | 2 | 2 | B.1.617.2 | 0.000008 |
N | 360 | Y360Y | taC | taT | 2 | 2 | B.1.625 | 0.004706 |
N | 360 | Y360Y | taC | taT | 2 | 2 | C.36.3 | 0.001134 |
N | 360 | Y360H | Tac | Cac | 2 | 2 | P.1 | 0.000032 |
N | 360 | Y360Y | taC | taT | 2 | 2 | P.1.7 | 0.000639 |
N | 360 | Y360Y | taC | taT | 2 | 2 | Q.1 | 0.000253 |
N | 360 | Y360Y | taC | taT | 1 | 1 | A.2 | 0.000662 |
N | 360 | Y360H | Tac | Cac | 1 | 1 | A.2.2 | 0.001689 |
N | 360 | Y360Y | taC | taT | 1 | 1 | A.27 | 0.001656 |
N | 360 | Y360Y | taC | taT | 1 | 1 | A.29 | 0.005319 |
N | 360 | Y360Y | taC | taT | 1 | 1 | AL.1 | 0.012987 |
N | 360 | Y360L | TAC | CTA | 1 | 1 | All | 0 |
N | 360 | Y360Y | taC | taT | 1 | 1 | AY.10 | 0.00053 |
N | 360 | Y360H | Tac | Cac | 1 | 1 | AY.102 | 0.000027 |
N | 360 | Y360H | Tac | Cac | 1 | 1 | AY.103 | 0.000006 |
N | 360 | Y360Y | taC | taT | 1 | 1 | AY.105 | 0.000643 |
N | 360 | Y360Y | taC | taT | 1 | 1 | AY.110 | 0.000113 |
N | 360 | Y360Y | taC | taT | 1 | 1 | AY.116 | 0.000287 |
N | 360 | Y360H | Tac | Cac | 1 | 1 | AY.118 | 0.000063 |
N | 360 | Y360Y | taC | taT | 1 | 1 | AY.16.1 | 0.00047 |
N | 360 | Y360Y | taC | taT | 1 | 1 | AY.19 | 0.00114 |
N | 360 | Y360Y | taC | taT | 1 | 1 | AY.32 | 0.000532 |
N | 360 | Y360Y | taC | taT | 1 | 1 | AY.36 | 0.000148 |
N | 360 | Y360Y | taC | taT | 1 | 1 | AY.37 | 0.000316 |
N | 360 | Y360H | Tac | Cac | 1 | 1 | AY.39 | 0.000025 |
N | 360 | Y360del1 | taC | ta- | 1 | 1 | AY.4.2.1 | 0.000149 |
N | 360 | Y360del | TAC | --- | 1 | 1 | AY.43 | 0.000004 |
N | 360 | Y360S | tAc | tCc | 1 | 1 | AY.46 | 0.000104 |
N | 360 | Y360X | taC | taA | 1 | 1 | AY.46.2 | 0.000635 |
N | 360 | Y360Y | taC | taT | 1 | 1 | AY.46.3 | 0.000934 |
N | 360 | Y360Y | taC | taT | 1 | 1 | AY.46.4 | 0.000165 |
N | 360 | Y360Y | taC | taT | 1 | 1 | AY.49 | 0.003195 |
N | 360 | Y360Y | taC | taT | 1 | 1 | AY.5.4 | 0.000277 |
N | 360 | Y360Y | taC | taT | 1 | 1 | AY.55 | 0.000917 |
N | 360 | Y360Y | taC | taT | 1 | 1 | AY.62 | 0.000436 |
N | 360 | Y360del | TAC | --- | 1 | 1 | AY.67 | 0.000464 |
N | 360 | Y360H | Tac | Cac | 1 | 1 | AY.69 | 0.000187 |
N | 360 | Y360H | Tac | Cac | 1 | 1 | AY.7 | 0.000196 |
N | 360 | Y360Y | taC | taT | 1 | 1 | AY.7.1 | 0.000113 |
N | 360 | Y360H | Tac | Cac | 1 | 1 | AY.70 | 0.000209 |
N | 360 | Y360Y | taC | taT | 1 | 1 | AY.70 | 0.000209 |
N | 360 | Y360Y | taC | taT | 1 | 1 | AY.74 | 0.000116 |
N | 360 | Y360H | Tac | Cac | 1 | 1 | AY.8 | 0.000606 |
N | 360 | Y360Y | taC | taT | 1 | 1 | AY.84 | 0.000437 |
N | 360 | Y360Y | taC | taT | 1 | 1 | AY.87 | 0.000833 |
N | 360 | Y360Y | taC | taT | 1 | 1 | AY.9.1 | 0.000084 |
N | 360 | Y360X | taC | taA | 1 | 1 | AY.9.1 | 0.000084 |
N | 360 | Y360Y | taC | taT | 1 | 1 | AY.90 | 0.000684 |
N | 360 | Y360Y | taC | taT | 1 | 1 | AY.91 | 0.00073 |
N | 360 | Y360Y | taC | taT | 1 | 1 | AY.92 | 0.000287 |
N | 360 | Y360Y | taC | taT | 1 | 1 | AY.98 | 0.000079 |
N | 360 | Y360H | Tac | Cac | 1 | 1 | AY.99.2 | 0.000092 |
N | 360 | Y360Y | taC | taT | 1 | 1 | AZ.1 | 0.000867 |
N | 360 | Y360Y | taC | taT | 1 | 1 | AZ.2 | 0.000821 |
N | 360 | Y360N | Tac | Aac | 1 | 1 | B | 0.000128 |
N | 360 | Y360del | TAC | --- | 1 | 1 | B.1 | 0.000009 |
N | 360 | Y360X | taC | taA | 1 | 1 | B.1 | 0.000009 |
N | 360 | Y360S | tAc | tCc | 1 | 1 | B.1 | 0.000009 |
N | 360 | Y360C | tAc | tGc | 1 | 1 | B.1 | 0.000009 |
N | 360 | Y360H | Tac | Cac | 1 | 1 | B.1.1 | 0.000018 |
N | 360 | Y360del | TAC | --- | 1 | 1 | B.1.1 | 0.000018 |
N | 360 | Y360del | TAC | --- | 1 | 1 | B.1.1.139 | 0.022727 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.1.174 | 0.003378 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.1.176 | 0.000439 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.1.230 | 0.009174 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.1.243 | 0.004082 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.1.26 | 0.005236 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.1.265 | 0.003155 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.1.27 | 0.00565 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.1.277 | 0.000759 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.1.286 | 0.002899 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.1.301 | 0.001179 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.1.303 | 0.002762 |
N | 360 | Y360del1 | tAc | t-c | 1 | 1 | B.1.1.306 | 0.000438 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.1.306 | 0.000438 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.1.312 | 0.001912 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.1.33 | 0.000421 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.1.354 | 0.004386 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.1.37 | 0.000193 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.1.372 | 0.000689 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.1.39 | 0.00051 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.1.416 | 0.000905 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.1.458 | 0.041667 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.1.46 | 0.004367 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.1.486 | 0.001577 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.1.487 | 0.005587 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.1.50 | 0.000679 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.1.506 | 0.037037 |
N | 360 | Y360X | taC | taA | 1 | 1 | B.1.1.519 | 0.00004 |
N | 360 | Y360F | tAc | tTc | 1 | 1 | B.1.1.519 | 0.00004 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.1.523 | 0.001563 |
N | 360 | Y360del | TAC | --- | 1 | 1 | B.1.1.7 | 0.000001 |
N | 360 | Y360X | taC | taA | 1 | 1 | B.1.1.7 | 0.000001 |
N | 360 | Y360C | tAc | tGc | 1 | 1 | B.1.1.7 | 0.000001 |
N | 360 | Y360S | tAc | tCc | 1 | 1 | B.1.1.7 | 0.000001 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.1.8 | 0.003584 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.142 | 0.002899 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.146 | 0.004237 |
N | 360 | Y360X | taC | taA | 1 | 1 | B.1.177 | 0.000013 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.177.21 | 0.000076 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.177.54 | 0.000606 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.177.56 | 0.000668 |
N | 360 | Y360L | TAC | CTA | 1 | 1 | B.1.177.63 | 0.002703 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.177.77 | 0.000726 |
N | 360 | Y360H | Tac | Cac | 1 | 1 | B.1.177.86 | 0.000183 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.190 | 0.01 |
N | 360 | Y360H | Tac | Cac | 1 | 1 | B.1.2 | 0.000009 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.206 | 0.000816 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.214.1 | 0.02 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.214.2 | 0.0006 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.215 | 0.009615 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.234 | 0.000132 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.237 | 0.004975 |
N | 360 | Y360H | Tac | Cac | 1 | 1 | B.1.243 | 0.00007 |
N | 360 | Y360X | taC | taA | 1 | 1 | B.1.243 | 0.00007 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.258.11 | 0.000396 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.258.17 | 0.000104 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.258.22 | 0.002667 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.265 | 0.001271 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.3 | 0.002618 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.329 | 0.000608 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.36.10 | 0.004785 |
N | 360 | Y360S | tAc | tCc | 1 | 1 | B.1.36.10 | 0.004785 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.36.38 | 0.001642 |
N | 360 | Y360F | tAc | tTc | 1 | 1 | B.1.36.8 | 0.001 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.385 | 0.010638 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.389 | 0.001002 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.398 | 0.002976 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.399 | 0.001934 |
N | 360 | Y360del | TAC | --- | 1 | 1 | B.1.415 | 0.014286 |
N | 360 | Y360X | taC | taA | 1 | 1 | B.1.427 | 0.00005 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.480 | 0.002488 |
N | 360 | Y360F | tAc | tTc | 1 | 1 | B.1.503 | 0.002488 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.509 | 0.000866 |
N | 360 | Y360H | Tac | Cac | 1 | 1 | B.1.509 | 0.000866 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.517 | 0.000427 |
N | 360 | Y360X | taC | taA | 1 | 1 | B.1.526 | 0.000024 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.556 | 0.007519 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.560 | 0.00463 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.564.1 | 0.001577 |
N | 360 | Y360H | Tac | Cac | 1 | 1 | B.1.575 | 0.000303 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.577 | 0.000687 |
N | 360 | Y360H | Tac | Cac | 1 | 1 | B.1.577 | 0.000687 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.587 | 0.001898 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.590 | 0.004545 |
N | 360 | Y360H | Tac | Cac | 1 | 1 | B.1.596 | 0.000087 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.597 | 0.00463 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.611 | 0.04 |
N | 360 | Y360N | Tac | Aac | 1 | 1 | B.1.617.2 | 0.000004 |
N | 360 | Y360C | tAc | tGc | 1 | 1 | B.1.617.2 | 0.000004 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.617.3 | 0.002985 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.619.1 | 0.000641 |
N | 360 | Y360H | Tac | Cac | 1 | 1 | B.1.620 | 0.000946 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.1.626 | 0.005714 |
N | 360 | Y360del | TAC | --- | 1 | 1 | B.1.630 | 0.005236 |
N | 360 | Y360C | tAc | tGc | 1 | 1 | B.1.8 | 0.001972 |
N | 360 | Y360Y | taC | taT | 1 | 1 | B.10 | 0.008264 |
N | 360 | Y360Y | taC | taT | 1 | 1 | C.32 | 0.023256 |
N | 360 | Y360F | tAc | tTc | 1 | 1 | D.2 | 0.000075 |
N | 360 | Y360Y | taC | taT | 1 | 1 | N.3 | 0.005814 |
N | 360 | Y360Y | taC | taT | 1 | 1 | P.1.12 | 0.000484 |
N | 360 | Y360Y | taC | taT | 1 | 1 | P.3 | 0.001595 |
N | 360 | Y360Y | taC | taT | 1 | 1 | Q.2 | 0.000613 |
N | 360 | Y360Y | taC | taT | 1 | 1 | Q.3 | 0.000145 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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