CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 360

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N360Y360YsyntaCtaT1096510965129351-29353
N360Y360HnonsynTacCac1041030.99038529351-29353
N360Y360HnonsynTaCCaT10410.0096153829351-29353
N360Y360XnonsyntaCtaA29280.96551729351-29353
N360Y360XnonsyntACtGA2910.034482829351-29353
N360Y360deldelTAC---1010129351-29353
N360Y360FnonsyntActTc88129351-29353
N360Y360CnonsyntActGc44129351-29353
N360Y360SnonsyntActCc44129351-29353
N360Y360del1deltaCta-420.529351-29353
N360Y360del1deltAct-c420.529351-29353
N360Y360NnonsynTacAac22129351-29353
N360Y360del2deltACt--22129351-29353
N360Y360LnonsynTACCTA11129351-29353

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N360Y360YtaCtaT1096510965All0.002097
N360Y360YtaCtaT31183118B.1.1.2140.172915
N360Y360YtaCtaT20312031B.1.1.70.001818
N360Y360YtaCtaT738738AY.40.001149
N360Y360YtaCtaT405405B.1.617.20.001525
N360Y360YtaCtaT229229B.1.6370.016734
N360Y360YtaCtaT219219B.1.4270.011059
N360Y360YtaCtaT216216AY.1030.001341
N360Y360YtaCtaT215215AY.440.001309
N360Y360YtaCtaT212212B.1.20.001867
N360Y360YtaCtaT211211AY.260.005973
N360Y360YtaCtaT172172B.1.1.1960.982857
N360Y360YtaCtaT153153B.1.230.927273
N360Y360YtaCtaT150150B.1.10.002721
N360Y360YtaCtaT141141B.1.5260.003314
N360Y360YtaCtaT110110AY.250.000662
N360Y360YtaCtaT109109AY.420.004385
N360Y360HTacCac103104All0.00002
N360Y360HTaCCaT1104All0
N360Y360YtaCtaT9797AY.430.00043
N360Y360YtaCtaT8585B.10.000779
N360Y360YtaCtaT8484P.10.001323
N360Y360YtaCtaT8282AY.470.002551
N360Y360YtaCtaT8181AY.4.50.008707
N360Y360YtaCtaT7272B.1.1600.002246
N360Y360YtaCtaT7171AY.90.004799
N360Y360YtaCtaT7070AY.410.020576
N360Y360YtaCtaT6666B.1.4290.001553
N360Y360YtaCtaT5656AY.60.002303
N360Y360YtaCtaT5252AY.390.001285
N360Y360YtaCtaT5050AY.50.001032
N360Y360YtaCtaT5050P.1.170.008088
N360Y360YtaCtaT4848AY.1200.001785
N360Y360YtaCtaT4343B.1.5960.003747
N360Y360YtaCtaT4040B.1.1.700.013643
N360Y360YtaCtaT4040R.10.0036
N360Y360YtaCtaT3838B.1.177.440.01972
N360Y360YtaCtaT3838B.1.2580.002529
N360Y360YtaCtaT3636AY.30.000358
N360Y360YtaCtaT3535AY.1000.00161
N360Y360YtaCtaT3333B.1.621.10.016692
N360Y360YtaCtaT3333C.370.00383
N360Y360YtaCtaT3232AY.1190.00113
N360Y360YtaCtaT3131B.1.1.5190.001231
N360Y360YtaCtaT3030AY.3.10.002558
N360Y360XtaCtaA2829All0.000005
N360Y360XtACtGA129All0
N360Y360YtaCtaT2929AY.1020.000769
N360Y360YtaCtaT2929B.1.1770.000382
N360Y360YtaCtaT2828AY.70.005488
N360Y360HTacCac2727AY.40.000042
N360Y360YtaCtaT2626AY.1170.002197
N360Y360YtaCtaT2626AY.39.10.00103
N360Y360HTacCac2525B.1.1.70.000022
N360Y360YtaCtaT2222AY.200.000855
N360Y360YtaCtaT2121AY.330.001402
N360Y360YtaCtaT2121AY.610.0022
N360Y360YtaCtaT2121B.1.5750.006371
N360Y360YtaCtaT2121Q.40.00955
N360Y360YtaCtaT2020B.1.1.1780.833333
N360Y360YtaCtaT2020B.1.466.20.007825
N360Y360YtaCtaT1919B.1.4970.00598
N360Y360YtaCtaT1818B.1.3510.000535
N360Y360YtaCtaT1717B.1.1.2800.052469
N360Y360YtaCtaT1616B.1.4240.129032
N360Y360YtaCtaT1616Q.80.002639
N360Y360YtaCtaT1515AY.290.000237
N360Y360YtaCtaT1515P.1.140.000717
N360Y360YtaCtaT1414AY.1090.010355
N360Y360YtaCtaT1414AY.4.20.000304
N360Y360YtaCtaT1313AY.9.20.000477
N360Y360YtaCtaT1313B.1.5250.001471
N360Y360YtaCtaT1313B.1.5880.011829
N360Y360YtaCtaT1313P.1.150.00302
N360Y360YtaCtaT1212AY.850.005126
N360Y360YtaCtaT1212AY.98.10.000581
N360Y360YtaCtaT1212B.1.4890.521739
N360Y360YtaCtaT1111B.1.1.2840.001181
N360Y360YtaCtaT1111B.1.5270.040741
N360Y360YtaCtaT1111B.1.617.10.001419
N360Y360delTAC---1010All0.000002
N360Y360HTacCac1010AY.250.00006
N360Y360YtaCtaT1010AY.75.10.001803
N360Y360YtaCtaT1010B.1.2430.000696
N360Y360YtaCtaT1010B.1.3690.002852
N360Y360YtaCtaT99A0.003483
N360Y360YtaCtaT99AE.80.004401
N360Y360YtaCtaT99AY.1180.000564
N360Y360YtaCtaT99AY.380.004493
N360Y360YtaCtaT99AY.750.000504
N360Y360YtaCtaT99B.1.177.810.001704
N360Y360YtaCtaT99B.1.3110.002471
N360Y360FtActTc88All0.000002
N360Y360XtaCtaA88AY.460.000833
N360Y360YtaCtaT88B.1.1.3680.024691
N360Y360YtaCtaT88B.1.2790.004109
N360Y360YtaCtaT88B.1.3460.010485
N360Y360YtaCtaT88B.1.360.001167
N360Y360YtaCtaT88B.1.36.290.004139
N360Y360YtaCtaT88B.1.4090.00625
N360Y360YtaCtaT77AY.970.011905
N360Y360YtaCtaT77B.1.2800.05
N360Y360YtaCtaT77B.1.351.20.002118
N360Y360YtaCtaT77B.1.5640.002981
N360Y360YtaCtaT77D.20.000525
N360Y360YtaCtaT77P.1.60.013619
N360Y360YtaCtaT66AY.1130.000854
N360Y360YtaCtaT66AY.140.000528
N360Y360YtaCtaT66AY.230.000418
N360Y360YtaCtaT66AY.460.000624
N360Y360YtaCtaT66AY.480.002791
N360Y360YtaCtaT66AY.590.003178
N360Y360YtaCtaT66B.1.1.2220.001224
N360Y360YtaCtaT66B.1.177.820.002864
N360Y360YtaCtaT55AY.1140.001156
N360Y360YtaCtaT55AY.270.000324
N360Y360YtaCtaT55AY.340.000485
N360Y360YtaCtaT55AY.4.30.004209
N360Y360HTacCac55AY.430.000022
N360Y360HTacCac45AY.440.000024
N360Y360HTaCCaT15AY.440.000006
N360Y360YtaCtaT55AY.640.002976
N360Y360YtaCtaT55AY.99.20.000461
N360Y360YtaCtaT55B.1.1.10.001633
N360Y360YtaCtaT55B.1.1.670.022831
N360Y360YtaCtaT55B.1.177.600.001092
N360Y360YtaCtaT55B.1.4110.018519
N360Y360YtaCtaT55B.1.5440.03012
N360Y360YtaCtaT44A.10.001127
N360Y360StActCc44All0.000001
N360Y360CtActGc44All0.000001
N360Y360del1taCta-24All0
N360Y360del1tAct-c24All0
N360Y360YtaCtaT44AY.450.000487
N360Y360XtaCtaA44AY.46.10.004107
N360Y360YtaCtaT44AY.5.30.00135
N360Y360YtaCtaT44AY.9.2.10.007905
N360Y360YtaCtaT44AY.990.004197
N360Y360YtaCtaT44B.1.1.1530.004381
N360Y360YtaCtaT44B.1.1.250.002274
N360Y360YtaCtaT44B.1.1.280.001245
N360Y360YtaCtaT44B.1.1.2940.005063
N360Y360YtaCtaT44B.1.1.3170.001647
N360Y360YtaCtaT44B.1.1.4510.153846
N360Y360YtaCtaT44B.1.1470.003023
N360Y360YtaCtaT44B.1.177.730.002265
N360Y360XtaCtaA44B.1.617.20.000015
N360Y360YtaCtaT44C.350.003096
N360Y360YtaCtaT44P.20.000747
N360Y360YtaCtaT33A.2.50.001497
N360Y360YtaCtaT33AY.1070.001398
N360Y360YtaCtaT33AY.1210.000406
N360Y360YtaCtaT33AY.130.000483
N360Y360YtaCtaT33AY.29.10.000662
N360Y360YtaCtaT33AY.350.000699
N360Y360YtaCtaT33AY.4.2.10.000447
N360Y360YtaCtaT33AY.46.60.000217
N360Y360HTacCac33AY.7.20.001678
N360Y360YtaCtaT33AY.800.003386
N360Y360YtaCtaT33B.1.1.3980.009677
N360Y360YtaCtaT33B.1.1.4200.003018
N360Y360YtaCtaT33B.1.1.5240.0625
N360Y360YtaCtaT33B.1.1.630.001157
N360Y360YtaCtaT33B.1.160.150.014851
N360Y360YtaCtaT33B.1.2410.002435
N360Y360YtaCtaT33B.1.243.20.043478
N360Y360YtaCtaT33B.1.258.70.005736
N360Y360YtaCtaT33B.1.36.250.006623
N360Y360YtaCtaT33B.1.36.80.003
N360Y360YtaCtaT33B.1.5510.003871
N360Y360YtaCtaT33B.1.5950.000783
N360Y360YtaCtaT33B.1.6200.002838
N360Y360YtaCtaT33B.1.6210.000266
N360Y360YtaCtaT33B.1.6230.001609
N360Y360delTAC---220.111111
N360Y360del2tACt--220.111111
N360Y360del2tACt--22All0
N360Y360NTacAac22All0
N360Y360XtACtGA12AY.1030.000006
N360Y360XtaCtaA12AY.1030.000006
N360Y360YtaCtaT22AY.120.000632
N360Y360YtaCtaT22AY.160.000759
N360Y360HTacCac22AY.200.000078
N360Y360YtaCtaT22AY.240.000862
N360Y360FtActTc22AY.250.000012
N360Y360HTacCac22AY.4.20.000043
N360Y360XtaCtaA22AY.430.000009
N360Y360FtActTc22AY.430.000009
N360Y360YtaCtaT22AY.540.000191
N360Y360YtaCtaT22AY.600.001876
N360Y360YtaCtaT22AY.710.00095
N360Y360YtaCtaT22B0.000256
N360Y360HTacCac22B.10.000018
N360Y360del1taCta-12B.10.000009
N360Y360del1tAct-c12B.10.000009
N360Y360YtaCtaT22B.1.1.1700.002494
N360Y360YtaCtaT22B.1.1.2070.002364
N360Y360YtaCtaT22B.1.1.2690.002706
N360Y360YtaCtaT22B.1.1.3040.005618
N360Y360YtaCtaT22B.1.1.3480.001592
N360Y360YtaCtaT22B.1.1.3620.011236
N360Y360YtaCtaT22B.1.1.4090.005666
N360Y360YtaCtaT22B.1.1.4340.000697
N360Y360YtaCtaT22B.1.177.40.000422
N360Y360YtaCtaT22B.1.177.400.010309
N360Y360YtaCtaT22B.1.177.530.004785
N360Y360YtaCtaT22B.1.177.860.000367
N360Y360YtaCtaT22B.1.177.870.001456
N360Y360YtaCtaT22B.1.351.30.001753
N360Y360YtaCtaT22B.1.36.170.000988
N360Y360YtaCtaT22B.1.36.310.003503
N360Y360YtaCtaT22B.1.4080.00738
N360Y360YtaCtaT22B.1.438.10.000215
N360Y360YtaCtaT22B.1.4590.008163
N360Y360YtaCtaT22B.1.4700.002809
N360Y360YtaCtaT22B.1.4990.002101
N360Y360YtaCtaT22B.1.5380.016129
N360Y360YtaCtaT22B.1.5460.007407
N360Y360YtaCtaT22B.1.5820.000981
N360Y360YtaCtaT22B.1.6090.000959
N360Y360HTacCac22B.1.617.20.000008
N360Y360YtaCtaT22B.1.6250.004706
N360Y360YtaCtaT22C.36.30.001134
N360Y360HTacCac22P.10.000032
N360Y360YtaCtaT22P.1.70.000639
N360Y360YtaCtaT22Q.10.000253
N360Y360YtaCtaT11A.20.000662
N360Y360HTacCac11A.2.20.001689
N360Y360YtaCtaT11A.270.001656
N360Y360YtaCtaT11A.290.005319
N360Y360YtaCtaT11AL.10.012987
N360Y360LTACCTA11All0
N360Y360YtaCtaT11AY.100.00053
N360Y360HTacCac11AY.1020.000027
N360Y360HTacCac11AY.1030.000006
N360Y360YtaCtaT11AY.1050.000643
N360Y360YtaCtaT11AY.1100.000113
N360Y360YtaCtaT11AY.1160.000287
N360Y360HTacCac11AY.1180.000063
N360Y360YtaCtaT11AY.16.10.00047
N360Y360YtaCtaT11AY.190.00114
N360Y360YtaCtaT11AY.320.000532
N360Y360YtaCtaT11AY.360.000148
N360Y360YtaCtaT11AY.370.000316
N360Y360HTacCac11AY.390.000025
N360Y360del1taCta-11AY.4.2.10.000149
N360Y360delTAC---11AY.430.000004
N360Y360StActCc11AY.460.000104
N360Y360XtaCtaA11AY.46.20.000635
N360Y360YtaCtaT11AY.46.30.000934
N360Y360YtaCtaT11AY.46.40.000165
N360Y360YtaCtaT11AY.490.003195
N360Y360YtaCtaT11AY.5.40.000277
N360Y360YtaCtaT11AY.550.000917
N360Y360YtaCtaT11AY.620.000436
N360Y360delTAC---11AY.670.000464
N360Y360HTacCac11AY.690.000187
N360Y360HTacCac11AY.70.000196
N360Y360YtaCtaT11AY.7.10.000113
N360Y360HTacCac11AY.700.000209
N360Y360YtaCtaT11AY.700.000209
N360Y360YtaCtaT11AY.740.000116
N360Y360HTacCac11AY.80.000606
N360Y360YtaCtaT11AY.840.000437
N360Y360YtaCtaT11AY.870.000833
N360Y360YtaCtaT11AY.9.10.000084
N360Y360XtaCtaA11AY.9.10.000084
N360Y360YtaCtaT11AY.900.000684
N360Y360YtaCtaT11AY.910.00073
N360Y360YtaCtaT11AY.920.000287
N360Y360YtaCtaT11AY.980.000079
N360Y360HTacCac11AY.99.20.000092
N360Y360YtaCtaT11AZ.10.000867
N360Y360YtaCtaT11AZ.20.000821
N360Y360NTacAac11B0.000128
N360Y360delTAC---11B.10.000009
N360Y360XtaCtaA11B.10.000009
N360Y360StActCc11B.10.000009
N360Y360CtActGc11B.10.000009
N360Y360HTacCac11B.1.10.000018
N360Y360delTAC---11B.1.10.000018
N360Y360delTAC---11B.1.1.1390.022727
N360Y360YtaCtaT11B.1.1.1740.003378
N360Y360YtaCtaT11B.1.1.1760.000439
N360Y360YtaCtaT11B.1.1.2300.009174
N360Y360YtaCtaT11B.1.1.2430.004082
N360Y360YtaCtaT11B.1.1.260.005236
N360Y360YtaCtaT11B.1.1.2650.003155
N360Y360YtaCtaT11B.1.1.270.00565
N360Y360YtaCtaT11B.1.1.2770.000759
N360Y360YtaCtaT11B.1.1.2860.002899
N360Y360YtaCtaT11B.1.1.3010.001179
N360Y360YtaCtaT11B.1.1.3030.002762
N360Y360del1tAct-c11B.1.1.3060.000438
N360Y360YtaCtaT11B.1.1.3060.000438
N360Y360YtaCtaT11B.1.1.3120.001912
N360Y360YtaCtaT11B.1.1.330.000421
N360Y360YtaCtaT11B.1.1.3540.004386
N360Y360YtaCtaT11B.1.1.370.000193
N360Y360YtaCtaT11B.1.1.3720.000689
N360Y360YtaCtaT11B.1.1.390.00051
N360Y360YtaCtaT11B.1.1.4160.000905
N360Y360YtaCtaT11B.1.1.4580.041667
N360Y360YtaCtaT11B.1.1.460.004367
N360Y360YtaCtaT11B.1.1.4860.001577
N360Y360YtaCtaT11B.1.1.4870.005587
N360Y360YtaCtaT11B.1.1.500.000679
N360Y360YtaCtaT11B.1.1.5060.037037
N360Y360XtaCtaA11B.1.1.5190.00004
N360Y360FtActTc11B.1.1.5190.00004
N360Y360YtaCtaT11B.1.1.5230.001563
N360Y360delTAC---11B.1.1.70.000001
N360Y360XtaCtaA11B.1.1.70.000001
N360Y360CtActGc11B.1.1.70.000001
N360Y360StActCc11B.1.1.70.000001
N360Y360YtaCtaT11B.1.1.80.003584
N360Y360YtaCtaT11B.1.1420.002899
N360Y360YtaCtaT11B.1.1460.004237
N360Y360XtaCtaA11B.1.1770.000013
N360Y360YtaCtaT11B.1.177.210.000076
N360Y360YtaCtaT11B.1.177.540.000606
N360Y360YtaCtaT11B.1.177.560.000668
N360Y360LTACCTA11B.1.177.630.002703
N360Y360YtaCtaT11B.1.177.770.000726
N360Y360HTacCac11B.1.177.860.000183
N360Y360YtaCtaT11B.1.1900.01
N360Y360HTacCac11B.1.20.000009
N360Y360YtaCtaT11B.1.2060.000816
N360Y360YtaCtaT11B.1.214.10.02
N360Y360YtaCtaT11B.1.214.20.0006
N360Y360YtaCtaT11B.1.2150.009615
N360Y360YtaCtaT11B.1.2340.000132
N360Y360YtaCtaT11B.1.2370.004975
N360Y360HTacCac11B.1.2430.00007
N360Y360XtaCtaA11B.1.2430.00007
N360Y360YtaCtaT11B.1.258.110.000396
N360Y360YtaCtaT11B.1.258.170.000104
N360Y360YtaCtaT11B.1.258.220.002667
N360Y360YtaCtaT11B.1.2650.001271
N360Y360YtaCtaT11B.1.30.002618
N360Y360YtaCtaT11B.1.3290.000608
N360Y360YtaCtaT11B.1.36.100.004785
N360Y360StActCc11B.1.36.100.004785
N360Y360YtaCtaT11B.1.36.380.001642
N360Y360FtActTc11B.1.36.80.001
N360Y360YtaCtaT11B.1.3850.010638
N360Y360YtaCtaT11B.1.3890.001002
N360Y360YtaCtaT11B.1.3980.002976
N360Y360YtaCtaT11B.1.3990.001934
N360Y360delTAC---11B.1.4150.014286
N360Y360XtaCtaA11B.1.4270.00005
N360Y360YtaCtaT11B.1.4800.002488
N360Y360FtActTc11B.1.5030.002488
N360Y360YtaCtaT11B.1.5090.000866
N360Y360HTacCac11B.1.5090.000866
N360Y360YtaCtaT11B.1.5170.000427
N360Y360XtaCtaA11B.1.5260.000024
N360Y360YtaCtaT11B.1.5560.007519
N360Y360YtaCtaT11B.1.5600.00463
N360Y360YtaCtaT11B.1.564.10.001577
N360Y360HTacCac11B.1.5750.000303
N360Y360YtaCtaT11B.1.5770.000687
N360Y360HTacCac11B.1.5770.000687
N360Y360YtaCtaT11B.1.5870.001898
N360Y360YtaCtaT11B.1.5900.004545
N360Y360HTacCac11B.1.5960.000087
N360Y360YtaCtaT11B.1.5970.00463
N360Y360YtaCtaT11B.1.6110.04
N360Y360NTacAac11B.1.617.20.000004
N360Y360CtActGc11B.1.617.20.000004
N360Y360YtaCtaT11B.1.617.30.002985
N360Y360YtaCtaT11B.1.619.10.000641
N360Y360HTacCac11B.1.6200.000946
N360Y360YtaCtaT11B.1.6260.005714
N360Y360delTAC---11B.1.6300.005236
N360Y360CtActGc11B.1.80.001972
N360Y360YtaCtaT11B.100.008264
N360Y360YtaCtaT11C.320.023256
N360Y360FtActTc11D.20.000075
N360Y360YtaCtaT11N.30.005814
N360Y360YtaCtaT11P.1.120.000484
N360Y360YtaCtaT11P.30.001595
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