CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 354 & Codon = aGt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N354N354SnonsynaAtaGt1851840.99459529333-29335

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N354N354SaAtaGt184185All0.000035
N354N354SaAtaGt4141AY.30.000408
N354N354SaAtaGt3030AY.40.000047
N354N354SaAtaGt1212AY.440.000073
N354N354SaAtaGt1212B.1.1.70.000011
N354N354SaAtaGt1111AY.1000.000506
N354N354SaAtaGt89B.1.617.20.00003
N354N354SaAtaGt77B.10.000064
N354N354SaAtaGt66AY.160.002278
N354N354SaAtaGt55AY.430.000022
N354N354SaAtaGt55B.1.20.000044
N354N354SaAtaGt44AY.450.000487
N354N354SaAtaGt44B.1.6360.026846
N354N354SaAtaGt33AY.140.000264
N354N354SaAtaGt22AY.250.000012
N354N354SaAtaGt22AY.260.000057
N354N354SaAtaGt22AY.390.000049
N354N354SaAtaGt22AY.46.60.000144
N354N354SaAtaGt22B.1.10.000036
N354N354SaAtaGt22B.1.1310.017544
N354N354SaAtaGt22B.1.1770.000026
N354N354SaAtaGt22B.1.177.450.000762
N354N354SaAtaGt22P.10.000032
N354N354SaAtaGt22P.1.150.000465
N354N354SaAtaGt11AY.120.000316
N354N354SaAtaGt11AY.230.00007
N354N354SaAtaGt11AY.290.000016
N354N354SaAtaGt11AY.50.000021
N354N354SaAtaGt11AY.500.000799
N354N354SaAtaGt11AY.7.10.000113
N354N354SaAtaGt11AY.9.20.000037
N354N354SaAtaGt11B.1.1.2220.000204
N354N354SaAtaGt11B.1.1.270.00565
N354N354SaAtaGt11B.1.1.4160.000905
N354N354SaAtaGt11B.1.1.4850.016667
N354N354SaAtaGt11B.1.1.5190.00004
N354N354SaAtaGt11B.1.2130.014925
N354N354SaAtaGt11B.1.4650.003802
N354N354SaAtaGt11B.1.6280.000352
N354N354SaAtaGt11D.20.000075

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.