CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 35 & Codon = gcC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	35	A35A		syn	gcG	gcC	30162	3856	0.127843	28376-28378

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	35	A35A	gcG	gcC	3856	30162	All	0.000738
N	35	A35A	gcG	gcC	51	4205	B.1.617.2	0.000192
N	35	A35A	gcG	gcC	1162	4190	AY.4	0.001809
N	35	A35A	gcG	gcC	107	3084	B.1.1.7	0.000096
N	35	A35A	gcG	gcC	1411	1411	A.23.1	0.993662
N	35	A35A	gcG	gcC	3	1063	AY.43	0.000013
N	35	A35A	gcG	gcC	10	1028	AY.102	0.000265
N	35	A35A	gcG	gcC	6	499	B.1.177	0.000079
N	35	A35A	gcG	gcC	113	427	B.1.2	0.000995
N	35	A35A	gcG	gcC	25	400	AY.39	0.000618
N	35	A35A	gcG	gcC	142	390	P.1	0.002237
N	35	A35A	gcG	gcC	3	348	AY.98.1	0.000145
N	35	A35A	gcG	gcC	56	327	B.1	0.000513
N	35	A35A	gcG	gcC	11	302	AY.103	0.000068
N	35	A35A	gcG	gcC	17	293	AY.44	0.000103
N	35	A35A	gcG	gcC	24	245	AY.25	0.000144
N	35	A35A	gcG	gcC	24	162	AY.61	0.002515
N	35	A35A	gcG	gcC	3	150	B.1.1.306	0.001315
N	35	A35A	gcG	gcC	3	148	AY.3	0.00003
N	35	A35A	gcG	gcC	11	137	B.1.526	0.000259
N	35	A35A	gcG	gcC	55	126	B.1.1	0.000998
N	35	A35A	gcG	gcC	8	124	B.1.1.519	0.000318
N	35	A35A	gcG	gcC	123	123	B.1.1.301	0.145047
N	35	A35A	gcG	gcC	5	119	AY.98	0.000395
N	35	A35A	gcG	gcC	95	109	B.1.177.7	0.015661
N	35	A35A	gcG	gcC	7	108	B.1.258.17	0.000728
N	35	A35A	gcG	gcC	3	107	AY.29	0.000047
N	35	A35A	gcG	gcC	7	95	B.1.1.222	0.001428
N	35	A35A	gcG	gcC	93	93	A.23	0.978947
N	35	A35A	gcG	gcC	9	85	AY.117	0.000761
N	35	A35A	gcG	gcC	17	83	B.1.36	0.00248
N	35	A35A	gcG	gcC	6	75	AY.46	0.000624
N	35	A35A	gcG	gcC	1	72	AY.5	0.000021
N	35	A35A	gcG	gcC	15	66	AY.26	0.000425
N	35	A35A	gcG	gcC	6	66	B.1.160	0.000187
N	35	A35A	gcG	gcC	1	58	AY.36	0.000148
N	35	A35A	gcG	gcC	5	54	AY.20	0.000194
N	35	A35A	gcG	gcC	2	53	AY.120	0.000074
N	35	A35A	gcG	gcC	2	53	AY.42	0.00008
N	35	A35A	gcG	gcC	3	52	B.1.258	0.0002
N	35	A35A	gcG	gcC	3	51	AY.100	0.000138
N	35	A35A	gcG	gcC	9	51	AY.119	0.000318
N	35	A35A	gcG	gcC	3	44	AY.69	0.00056
N	35	A35A	gcG	gcC	2	39	AY.113	0.000285
N	35	A35A	gcG	gcC	2	39	AY.45	0.000243
N	35	A35A	gcG	gcC	3	38	AY.92	0.000862
N	35	A35A	gcG	gcC	5	37	AY.33	0.000334
N	35	A35A	gcG	gcC	2	35	B.1.609	0.000959
N	35	A35A	gcG	gcC	1	34	AY.4.2	0.000022
N	35	A35A	gcG	gcC	3	31	P.1.14	0.000143
N	35	A35A	gcG	gcC	1	29	AY.23	0.00007
N	35	A35A	gcG	gcC	10	27	AY.47	0.000311
N	35	A35A	gcG	gcC	1	27	AY.9	0.000068
N	35	A35A	gcG	gcC	1	23	B	0.000128
N	35	A35A	gcG	gcC	11	22	A	0.004257
N	35	A35A	gcG	gcC	2	22	R.1	0.00018
N	35	A35A	gcG	gcC	2	21	B.1.427	0.000101
N	35	A35A	gcG	gcC	2	20	AY.84	0.000875
N	35	A35A	gcG	gcC	14	20	B.1.1.216	0.012467
N	35	A35A	gcG	gcC	2	19	AY.121	0.000271
N	35	A35A	gcG	gcC	3	18	AY.99.2	0.000276
N	35	A35A	gcG	gcC	7	17	AY.5.3	0.002362
N	35	A35A	gcG	gcC	2	15	B.1.525	0.000226
N	35	A35A	gcG	gcC	5	13	B.1.1.28	0.001556
N	35	A35A	gcG	gcC	5	12	AY.120.1	0.001605
N	35	A35A	gcG	gcC	1	12	Q.8	0.000165
N	35	A35A	gcG	gcC	6	11	B.1.1.1	0.00196
N	35	A35A	gcG	gcC	2	10	AY.110	0.000225
N	35	A35A	gcG	gcC	1	10	AY.46.4	0.000165
N	35	A35A	gcG	gcC	7	10	AY.59	0.003708
N	35	A35A	gcG	gcC	4	10	AY.89	0.019608
N	35	A35A	gcG	gcC	1	10	C.37	0.000116
N	35	A35A	gcG	gcC	3	9	AY.4.4	0.001227
N	35	A35A	gcG	gcC	2	9	AY.7.1	0.000225
N	35	A35A	gcG	gcC	1	9	B.1.36.8	0.001
N	35	A35A	gcG	gcC	2	8	B.1.456	0.006536
N	35	A35A	gcG	gcC	1	7	A.1	0.000282
N	35	A35A	gcG	gcC	2	7	B.1.36.29	0.001035
N	35	A35A	gcG	gcC	2	6	A.2.5	0.000998
N	35	A35A	gcG	gcC	1	6	AY.16.1	0.00047
N	35	A35A	gcG	gcC	6	6	AY.39.1.1	0.004348
N	35	A35A	gcG	gcC	4	6	AY.66	0.004278
N	35	A35A	gcG	gcC	2	6	P.1.12	0.000968
N	35	A35A	gcG	gcC	1	5	AY.1	0.000396
N	35	A35A	gcG	gcC	4	5	AY.101	0.001962
N	35	A35A	gcG	gcC	4	5	AY.12	0.001264
N	35	A35A	gcG	gcC	5	5	B.1.160.26	0.012107
N	35	A35A	gcG	gcC	2	5	B.1.177.12	0.000303
N	35	A35A	gcG	gcC	2	5	D.2	0.00015
N	35	A35A	gcG	gcC	4	4	AY.79	0.004843
N	35	A35A	gcG	gcC	2	4	B.1.1.25	0.001137
N	35	A35A	gcG	gcC	1	4	B.1.1.433	0.001425
N	35	A35A	gcG	gcC	1	4	B.1.1.50	0.000679
N	35	A35A	gcG	gcC	3	3	AY.2	0.001068
N	35	A35A	gcG	gcC	1	3	B.1.1.263	0.001558
N	35	A35A	gcG	gcC	2	3	B.1.1.39	0.001019
N	35	A35A	gcG	gcC	2	3	B.6.6	0.001778
N	35	A35A	gcG	gcC	1	3	W.4	0.001351
N	35	A35A	gcG	gcC	1	2	B.1.1.135	0.004695
N	35	A35A	gcG	gcC	1	2	B.1.1.284	0.000107
N	35	A35A	gcG	gcC	1	2	B.1.1.368	0.003086
N	35	A35A	gcG	gcC	2	2	B.1.1.461	0.024096
N	35	A35A	gcG	gcC	1	2	B.1.1.464	0.001473
N	35	A35A	gcG	gcC	1	2	B.1.177.44	0.000519
N	35	A35A	gcG	gcC	1	2	B.1.236	0.002053
N	35	A35A	gcG	gcC	1	2	B.1.36.24	0.006173
N	35	A35A	gcG	gcC	1	2	B.1.416	0.001269
N	35	A35A	gcG	gcC	1	2	B.3.1	0.001658
N	35	A35A	gcG	gcC	1	1	AY.104	0.001984
N	35	A35A	gcG	gcC	1	1	B.1.1.10	0.001115
N	35	A35A	gcG	gcC	1	1	B.1.1.16	0.055556
N	35	A35A	gcG	gcC	1	1	B.1.1.161	0.003534
N	35	A35A	gcG	gcC	1	1	B.1.1.398	0.003226
N	35	A35A	gcG	gcC	1	1	B.1.1.413	0.006897
N	35	A35A	gcG	gcC	1	1	B.1.1.462	0.008621
N	35	A35A	gcG	gcC	1	1	B.1.1.83	0.00271
N	35	A35A	gcG	gcC	1	1	B.1.177.43	0.001477
N	35	A35A	gcG	gcC	1	1	B.1.177.86	0.000183
N	35	A35A	gcG	gcC	1	1	B.1.214	0.003663
N	35	A35A	gcG	gcC	1	1	B.1.36.10	0.004785
N	35	A35A	gcG	gcC	1	1	B.1.523	0.002451
N	35	A35A	gcG	gcC	1	1	M.3	0.076923
N	35	A35A	gcG	gcC	1	1	Q.4	0.000455
N	35	A35A	gcG	gcC	1	1	U.1	0.012821

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.