CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 348 & Codon = gaC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N348D348DsyngaTgaC15801580129315-29317

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N348D348DgaTgaC15801580All0.000302
N348D348DgaTgaC631631B.1.1.4320.798734
N348D348DgaTgaC128128B.1.1.70.000115
N348D348DgaTgaC8383AY.40.000129
N348D348DgaTgaC7272AY.50.001487
N348D348DgaTgaC7171B.1.617.20.000267
N348D348DgaTgaC6969B.10.000632
N348D348DgaTgaC6060P.1.140.002868
N348D348DgaTgaC5959B.1.20.00052
N348D348DgaTgaC3232AY.1030.000199
N348D348DgaTgaC2424B.1.220.031621
N348D348DgaTgaC2020AY.440.000122
N348D348DgaTgaC1919AY.710.009026
N348D348DgaTgaC1717B.1.10.000308
N348D348DgaTgaC1616AY.260.000453
N348D348DgaTgaC1515B.1.1.370.002893
N348D348DgaTgaC1414B.1.177.600.003058
N348D348DgaTgaC1313P.10.000205
N348D348DgaTgaC1212AY.430.000053
N348D348DgaTgaC1212AY.99.20.001106
N348D348DgaTgaC1212P.1.170.001941
N348D348DgaTgaC1111B.1.1770.000145
N348D348DgaTgaC88AY.1020.000212
N348D348DgaTgaC88AY.250.000048
N348D348DgaTgaC77AY.30.00007
N348D348DgaTgaC77AY.330.000467
N348D348DgaTgaC77AY.4.20.000152
N348D348DgaTgaC77B.1.360.001021
N348D348DgaTgaC66AY.230.000418
N348D348DgaTgaC66B.1.1110.007051
N348D348DgaTgaC55AY.120.10.001605
N348D348DgaTgaC55B0.000639
N348D348DgaTgaC55C.370.00058
N348D348DgaTgaC44AY.39.10.000158
N348D348DgaTgaC44B.1.1.1580.04878
N348D348DgaTgaC44B.1.1.2160.003562
N348D348DgaTgaC44P.1.40.003906
N348D348DgaTgaC33A0.001161
N348D348DgaTgaC33A.280.007937
N348D348DgaTgaC33AY.350.000699
N348D348DgaTgaC33B.1.1.1590.014019
N348D348DgaTgaC33B.1.1.2200.005576
N348D348DgaTgaC33B.1.1.2220.000612
N348D348DgaTgaC33B.1.1.2440.046154
N348D348DgaTgaC33B.1.3750.002459
N348D348DgaTgaC33B.1.466.20.001174
N348D348DgaTgaC33B.1.5960.000261
N348D348DgaTgaC22AY.200.000078
N348D348DgaTgaC22AY.3.10.000171
N348D348DgaTgaC22AY.370.000632
N348D348DgaTgaC22AY.470.000062
N348D348DgaTgaC22AY.60.000082
N348D348DgaTgaC22AY.690.000373
N348D348DgaTgaC22B.1.2060.001631
N348D348DgaTgaC22R.10.00018
N348D348DgaTgaC110.055556
N348D348DgaTgaC11AY.1160.000287
N348D348DgaTgaC11AY.1170.000085
N348D348DgaTgaC11AY.1200.000037
N348D348DgaTgaC11AY.140.000088
N348D348DgaTgaC11AY.160.00038
N348D348DgaTgaC11AY.270.000065
N348D348DgaTgaC11AY.300.000396
N348D348DgaTgaC11AY.320.000532
N348D348DgaTgaC11AY.34.10.00051
N348D348DgaTgaC11AY.46.60.000072
N348D348DgaTgaC11AY.540.000095
N348D348DgaTgaC11AY.650.000533
N348D348DgaTgaC11AY.790.001211
N348D348DgaTgaC11AY.870.000833
N348D348DgaTgaC11AY.900.000684
N348D348DgaTgaC11AY.920.000287
N348D348DgaTgaC11AY.98.10.000048
N348D348DgaTgaC11AY.990.001049
N348D348DgaTgaC11B.1.1.100.001115
N348D348DgaTgaC11B.1.1.1860.003436
N348D348DgaTgaC11B.1.1.1980.001468
N348D348DgaTgaC11B.1.1.2140.000055
N348D348DgaTgaC11B.1.1.250.000569
N348D348DgaTgaC11B.1.1.2790.001121
N348D348DgaTgaC11B.1.1.2840.000107
N348D348DgaTgaC11B.1.1.3060.000438
N348D348DgaTgaC11B.1.1.5190.00004
N348D348DgaTgaC11B.1.1.890.006061
N348D348DgaTgaC11B.1.1600.000031
N348D348DgaTgaC11B.1.177.500.004695
N348D348DgaTgaC11B.1.177.690.001484
N348D348DgaTgaC11B.1.1790.003759
N348D348DgaTgaC11B.1.2010.005682
N348D348DgaTgaC11B.1.2580.000067
N348D348DgaTgaC11B.1.258.170.000104
N348D348DgaTgaC11B.1.351.30.000876
N348D348DgaTgaC11B.1.36.260.002857
N348D348DgaTgaC11B.1.36.270.000763
N348D348DgaTgaC11B.1.3630.012987
N348D348DgaTgaC11B.1.4270.00005
N348D348DgaTgaC11B.1.4290.000024
N348D348DgaTgaC11B.1.5250.000113
N348D348DgaTgaC11B.1.5260.000024
N348D348DgaTgaC11B.1.5640.000426
N348D348DgaTgaC11B.1.5670.003333
N348D348DgaTgaC11B.1.5710.009709
N348D348DgaTgaC11B.1.5950.000261
N348D348DgaTgaC11B.1.6090.000479
N348D348DgaTgaC11B.1.617.10.000129
N348D348DgaTgaC11B.1.780.008547
N348D348DgaTgaC11B.230.002924
N348D348DgaTgaC11B.290.003509
N348D348DgaTgaC11P.1.10.000318
N348D348DgaTgaC11P.1.150.000232
N348D348DgaTgaC11Q.10.000126
N348D348DgaTgaC11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.