CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 346

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	346	F346F		syn	ttC	ttT	21777	21777	1	29309-29311
N	346	F346L		nonsyn	ttC	ttA	85	33	0.388235	29309-29311
N	346	F346L		nonsyn	Ttc	Ctc	85	31	0.364706	29309-29311
N	346	F346L		nonsyn	ttC	ttG	85	20	0.235294	29309-29311
N	346	F346L		nonsyn	TtC	CtA	85	1	0.0117647	29309-29311
N	346	F346S		nonsyn	tTc	tCc	25	24	0.96	29309-29311
N	346	F346S		nonsyn	TTc	AGc	25	1	0.04	29309-29311
N	346	F346del		del	TTC	---	21	21	1	29309-29311
N	346	F346I		nonsyn	Ttc	Atc	7	5	0.714286	29309-29311
N	346	F346I		nonsyn	TtC	AtA	7	1	0.142857	29309-29311
N	346	F346I		nonsyn	TtC	AtT	7	1	0.142857	29309-29311
N	346	F346Y		nonsyn	tTc	tAc	4	4	1	29309-29311
N	346	F346del1		del	ttC	tt-	2	2	1	29309-29311
N	346	F346V		nonsyn	Ttc	Gtc	2	2	1	29309-29311
N	346	F346N		nonsyn	TTc	AAc	2	2	1	29309-29311
N	346	F346W		nonsyn	tTC	tGG	1	1	1	29309-29311
N	346	F346E		nonsyn	TTC	GAA	1	1	1	29309-29311
N	346	F346K		nonsyn	TTC	AAG	1	1	1	29309-29311
N	346	F346R		nonsyn	TTC	AGG	1	1	1	29309-29311
N	346	F346M		nonsyn	TtC	AtG	1	1	1	29309-29311
N	346	F346X		nonsyn	tTC	tAG	1	1	1	29309-29311
N	346	F346C		nonsyn	tTc	tGc	1	1	1	29309-29311

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	346	F346F	ttC	ttT	21777	21777	All	0.004165
N	346	F346F	ttC	ttT	8406	8406	C.37	0.975627
N	346	F346F	ttC	ttT	2292	2292	B.1.1.7	0.002052
N	346	F346F	ttC	ttT	2137	2137	AY.39	0.052808
N	346	F346F	ttC	ttT	661	661	AY.43	0.002929
N	346	F346F	ttC	ttT	494	494	AY.4	0.000769
N	346	F346F	ttC	ttT	440	440	AY.44	0.002678
N	346	F346F	ttC	ttT	402	402	B.1.470	0.564607
N	346	F346F	ttC	ttT	396	396	AY.9.2	0.014545
N	346	F346F	ttC	ttT	350	350	B.1.2	0.003082
N	346	F346F	ttC	ttT	341	341	C.37.1	0.89267
N	346	F346F	ttC	ttT	336	336	B.1.36	0.049022
N	346	F346F	ttC	ttT	322	322	B.1.617.2	0.001212
N	346	F346F	ttC	ttT	226	226	AY.103	0.001403
N	346	F346F	ttC	ttT	206	206	B.1.427	0.010402
N	346	F346F	ttC	ttT	201	201	B.1.1.519	0.007982
N	346	F346F	ttC	ttT	199	199	B.1.526	0.004677
N	346	F346F	ttC	ttT	197	197	AY.119	0.006956
N	346	F346F	ttC	ttT	184	184	B.1.239	0.224664
N	346	F346F	ttC	ttT	177	177	AY.98.1	0.008572
N	346	F346F	ttC	ttT	176	176	B.1	0.001612
N	346	F346F	ttC	ttT	167	167	P.1	0.002631
N	346	F346F	ttC	ttT	156	156	B.1.1.362	0.876404
N	346	F346F	ttC	ttT	145	145	B.1.1.37	0.027965
N	346	F346F	ttC	ttT	143	143	B.1.177	0.001883
N	346	F346F	ttC	ttT	130	130	B.1.1.413	0.896552
N	346	F346F	ttC	ttT	128	128	AY.42	0.005149
N	346	F346F	ttC	ttT	118	118	AY.25	0.00071
N	346	F346F	ttC	ttT	117	117	AY.118	0.00733
N	346	F346F	ttC	ttT	98	98	B.1.1	0.001778
N	346	F346F	ttC	ttT	95	95	B.1.621	0.008409
N	346	F346L	ttC	ttA	33	85	All	0.000006
N	346	F346L	Ttc	Ctc	31	85	All	0.000006
N	346	F346L	ttC	ttG	20	85	All	0.000004
N	346	F346L	TtC	CtA	1	85	All	0
N	346	F346F	ttC	ttT	82	82	AY.102	0.002174
N	346	F346F	ttC	ttT	79	79	AY.39.1	0.003129
N	346	F346F	ttC	ttT	75	75	B.1.429	0.001765
N	346	F346F	ttC	ttT	69	69	AY.100	0.003174
N	346	F346F	ttC	ttT	64	64	AY.23	0.004464
N	346	F346F	ttC	ttT	60	60	B.1.36.29	0.03104
N	346	F346F	ttC	ttT	58	58	B.1.1.432	0.073418
N	346	F346F	ttC	ttT	56	56	B.1.1.157	0.051142
N	346	F346F	ttC	ttT	56	56	B.1.351	0.001665
N	346	F346F	ttC	ttT	50	50	B.1.637	0.003654
N	346	F346F	ttC	ttT	49	49	AY.5	0.001012
N	346	F346F	ttC	ttT	47	47	AY.3	0.000467
N	346	F346F	ttC	ttT	41	41	AY.20	0.001593
N	346	F346F	ttC	ttT	38	38	B.1.206	0.030995
N	346	F346F	ttC	ttT	34	34	Q.8	0.005607
N	346	F346F	ttC	ttT	33	33	B.1.1.434	0.011502
N	346	F346F	ttC	ttT	32	32	AY.46.4	0.005264
N	346	F346F	ttC	ttT	30	30	AY.46.2	0.01906
N	346	F346F	ttC	ttT	29	29	AY.29	0.000457
N	346	F346F	ttC	ttT	29	29	AY.33	0.001937
N	346	F346F	ttC	ttT	29	29	B.1.221	0.00206
N	346	F346F	ttC	ttT	28	28	AY.120	0.001041
N	346	F346F	ttC	ttT	28	28	AY.4.2	0.000607
N	346	F346F	ttC	ttT	28	28	B.1.1.28	0.008715
N	346	F346F	ttC	ttT	27	27	AY.26	0.000764
N	346	F346S	tTc	tCc	24	25	All	0.000005
N	346	F346S	TTc	AGc	1	25	All	0
N	346	F346F	ttC	ttT	25	25	B.1.258	0.001664
N	346	F346F	ttC	ttT	24	24	B.1.243	0.00167
N	346	F346F	ttC	ttT	23	23	B.1.160	0.000717
N	346	F346F	ttC	ttT	22	22	B.1.1.214	0.00122
N	346	F346F	ttC	ttT	22	22	B.1.577	0.01512
N	346	F346del	TTC	---	21	21	All	0.000004
N	346	F346F	ttC	ttT	21	21	AY.101	0.010299
N	346	F346F	ttC	ttT	21	21	AY.46.6	0.001516
N	346	F346F	ttC	ttT	21	21	B.1.1.280	0.064815
N	346	F346F	ttC	ttT	21	21	B.1.596	0.00183
N	346	F346F	ttC	ttT	20	20	AY.6	0.000823
N	346	F346F	ttC	ttT	20	20	AY.61	0.002096
N	346	F346F	ttC	ttT	20	20	AY.9	0.001352
N	346	F346F	ttC	ttT	19	19	AY.75	0.001064
N	346	F346F	ttC	ttT	18	18	AY.99.2	0.001659
N	346	F346F	ttC	ttT	17	17	AY.116.1	0.005294
N	346	F346F	ttC	ttT	16	16	B.1.1.176	0.00703
N	346	F346F	ttC	ttT	16	16	B.1.1.372	0.011019
N	346	F346F	ttC	ttT	16	16	R.1	0.00144
N	346	F346F	ttC	ttT	15	15	AY.15	0.033333
N	346	F346F	ttC	ttT	14	14	AY.47	0.000435
N	346	F346F	ttC	ttT	14	14	AY.56	0.022472
N	346	F346F	ttC	ttT	14	14	B.1.400	0.006006
N	346	F346F	ttC	ttT	14	14	P.1.14	0.000669
N	346	F346F	ttC	ttT	13	13	B.1.234	0.001715
N	346	F346F	ttC	ttT	13	13	B.1.609	0.006232
N	346	F346L	ttC	ttA	13	13	Q.1	0.001642
N	346	F346F	ttC	ttT	12	12	AY.34	0.001164
N	346	F346L	ttC	ttG	12	12	AY.4	0.000019
N	346	F346F	ttC	ttT	12	12	AY.46	0.001249
N	346	F346L	Ttc	Ctc	12	12	B.1.1.7	0.000011
N	346	F346F	ttC	ttT	12	12	P.2	0.00224
N	346	F346S	tTc	tCc	11	11	AY.4	0.000017
N	346	F346F	ttC	ttT	11	11	B.1.1.216	0.009795
N	346	F346F	ttC	ttT	11	11	B.1.1.222	0.002244
N	346	F346F	ttC	ttT	11	11	B.1.346	0.014417
N	346	F346F	ttC	ttT	11	11	D.2	0.000825
N	346	F346F	ttC	ttT	11	11	P.1.10	0.002964
N	346	F346F	ttC	ttT	11	11	P.1.13	0.009883
N	346	F346F	ttC	ttT	11	11	Q.3	0.001595
N	346	F346F	ttC	ttT	10	10	AY.16	0.003797
N	346	F346F	ttC	ttT	10	10	B.1.177.82	0.004773
N	346	F346F	ttC	ttT	10	10	B.1.575	0.003034
N	346	F346F	ttC	ttT	10	10	P.1.15	0.002323
N	346	F346F	ttC	ttT	10	10	P.1.17	0.001618
N	346	F346F	ttC	ttT	9	9	A.21	0.024931
N	346	F346F	ttC	ttT	9	9	AY.106	0.003014
N	346	F346L	ttC	ttA	8	9	AY.39.1	0.000317
N	346	F346L	Ttc	Ctc	1	9	AY.39.1	0.00004
N	346	F346F	ttC	ttT	9	9	AY.98	0.000711
N	346	F346L	ttC	ttA	5	9	B.1	0.000046
N	346	F346L	Ttc	Ctc	4	9	B.1	0.000037
N	346	F346F	ttC	ttT	9	9	B.1.525	0.001018
N	346	F346F	ttC	ttT	8	8	AY.73	0.005323
N	346	F346F	ttC	ttT	8	8	B.1.1.153	0.008762
N	346	F346F	ttC	ttT	8	8	B.1.1.318	0.002414
N	346	F346F	ttC	ttT	8	8	B.1.177.83	0.011852
N	346	F346F	ttC	ttT	8	8	B.1.623	0.004292
N	346	F346F	ttC	ttT	8	8	P.1.4	0.007812
N	346	F346I	Ttc	Atc	5	7	All	0.000001
N	346	F346I	TtC	AtA	1	7	All	0
N	346	F346I	TtC	AtT	1	7	All	0
N	346	F346F	ttC	ttT	7	7	AY.117	0.000592
N	346	F346F	ttC	ttT	7	7	AY.4.5	0.000752
N	346	F346F	ttC	ttT	7	7	AY.5.3	0.002362
N	346	F346F	ttC	ttT	7	7	AY.92	0.002011
N	346	F346F	ttC	ttT	7	7	B.1.1.284	0.000752
N	346	F346F	ttC	ttT	7	7	B.1.1.523	0.010937
N	346	F346F	ttC	ttT	7	7	B.1.177.21	0.000535
N	346	F346F	ttC	ttT	7	7	B.1.177.60	0.001529
N	346	F346F	ttC	ttT	7	7	B.1.177.81	0.001325
N	346	F346F	ttC	ttT	7	7	B.1.621.1	0.003541
N	346	F346F	ttC	ttT	7	7	C.14	0.030303
N	346	F346F	ttC	ttT	7	7	Q.4	0.003183
N	346	F346F	ttC	ttT	6	6	AY.93	0.001638
N	346	F346F	ttC	ttT	6	6	AZ.4	0.020134
N	346	F346F	ttC	ttT	6	6	B.1.1.33	0.002525
N	346	F346F	ttC	ttT	6	6	B.1.1.50	0.004073
N	346	F346F	ttC	ttT	6	6	B.1.1.63	0.002315
N	346	F346F	ttC	ttT	6	6	B.1.258.17	0.000624
N	346	F346F	ttC	ttT	5	5	AY.121	0.000677
N	346	F346F	ttC	ttT	5	5	AY.2	0.001781
N	346	F346L	Ttc	Ctc	5	5	AY.29	0.000079
N	346	F346F	ttC	ttT	5	5	AY.46.5	0.000992
N	346	F346F	ttC	ttT	5	5	B.1.1.1	0.001633
N	346	F346F	ttC	ttT	5	5	B.1.1.369	0.002231
N	346	F346F	ttC	ttT	5	5	B.1.162	0.025126
N	346	F346F	ttC	ttT	5	5	B.1.311	0.001373
N	346	F346F	ttC	ttT	5	5	B.1.36.10	0.023923
N	346	F346F	ttC	ttT	5	5	B.1.599	0.018248
N	346	F346F	ttC	ttT	5	5	B.1.628	0.001762
N	346	F346F	ttC	ttT	5	5	C.35	0.00387
N	346	F346F	ttC	ttT	4	4	A.2.5	0.001996
N	346	F346Y	tTc	tAc	4	4	All	0.000001
N	346	F346F	ttC	ttT	4	4	AY.107	0.001864
N	346	F346F	ttC	ttT	4	4	AY.111	0.000733
N	346	F346F	ttC	ttT	4	4	AY.36	0.000593
N	346	F346F	ttC	ttT	4	4	AY.45	0.000487
N	346	F346F	ttC	ttT	4	4	AY.90	0.002738
N	346	F346F	ttC	ttT	4	4	B.1.1.306	0.001754
N	346	F346F	ttC	ttT	4	4	B.1.1.317	0.001647
N	346	F346F	ttC	ttT	4	4	B.1.1.521	0.02139
N	346	F346F	ttC	ttT	4	4	B.1.111	0.0047
N	346	F346F	ttC	ttT	4	4	B.1.177.75	0.004162
N	346	F346F	ttC	ttT	4	4	B.1.356	0.006908
N	346	F346F	ttC	ttT	4	4	B.1.36.26	0.011429
N	346	F346F	ttC	ttT	3	3	AY.13	0.000483
N	346	F346F	ttC	ttT	3	3	AY.14	0.000264
N	346	F346F	ttC	ttT	3	3	AY.24	0.001293
N	346	F346F	ttC	ttT	3	3	AY.27	0.000194
N	346	F346F	ttC	ttT	3	3	AY.3.1	0.000256
N	346	F346F	ttC	ttT	3	3	AY.30	0.001187
N	346	F346F	ttC	ttT	3	3	AY.37	0.000948
N	346	F346S	tTc	tCc	3	3	AY.39	0.000074
N	346	F346F	ttC	ttT	3	3	AY.39.1.1	0.002174
N	346	F346S	tTc	tCc	3	3	AY.44	0.000018
N	346	F346F	ttC	ttT	3	3	AY.51	0.002727
N	346	F346F	ttC	ttT	3	3	AY.54	0.000286
N	346	F346F	ttC	ttT	3	3	AY.59	0.001589
N	346	F346F	ttC	ttT	3	3	AY.7	0.000588
N	346	F346F	ttC	ttT	3	3	AY.75.1	0.000541
N	346	F346F	ttC	ttT	3	3	AY.87	0.002498
N	346	F346F	ttC	ttT	3	3	AZ.3	0.004559
N	346	F346S	tTc	tCc	3	3	B.1	0.000027
N	346	F346F	ttC	ttT	3	3	B.1.1.263	0.004673
N	346	F346F	ttC	ttT	3	3	B.1.1.312	0.005736
N	346	F346F	ttC	ttT	3	3	B.1.1.528	0.014423
N	346	F346F	ttC	ttT	3	3	B.1.177.86	0.00055
N	346	F346F	ttC	ttT	3	3	B.1.305	0.006452
N	346	F346F	ttC	ttT	3	3	B.1.497	0.000944
N	346	F346F	ttC	ttT	3	3	B.1.9.5	0.017045
N	346	F346F	ttC	ttT	3	3	P.1.12	0.001452
N	346	F346del	TTC	---	2	2		0.111111
N	346	F346L	ttC	ttG	1	2		0.055556
N	346	F346L	ttC	ttA	1	2		0.055556
N	346	F346F	ttC	ttT	2	2	A.28	0.005291
N	346	F346N	TTc	AAc	2	2	All	0
N	346	F346V	Ttc	Gtc	2	2	All	0
N	346	F346del1	ttC	tt-	2	2	All	0
N	346	F346L	Ttc	Ctc	1	2	AY.103	0.000006
N	346	F346L	ttC	ttA	1	2	AY.103	0.000006
N	346	F346F	ttC	ttT	2	2	AY.34.1	0.00102
N	346	F346F	ttC	ttT	2	2	AY.35	0.000466
N	346	F346F	ttC	ttT	2	2	AY.38	0.000999
N	346	F346F	ttC	ttT	2	2	AY.41	0.000588
N	346	F346F	ttC	ttT	2	2	AY.62	0.000871
N	346	F346F	ttC	ttT	2	2	AY.64	0.00119
N	346	F346F	ttC	ttT	2	2	AY.7.1	0.000225
N	346	F346F	ttC	ttT	2	2	AY.97	0.003401
N	346	F346F	ttC	ttT	2	2	B.1.1.220	0.003717
N	346	F346F	ttC	ttT	2	2	B.1.1.25	0.001137
N	346	F346L	ttC	ttG	2	2	B.1.1.318	0.000604
N	346	F346del	TTC	---	2	2	B.1.1.7	0.000002
N	346	F346F	ttC	ttT	2	2	B.1.160.32	0.008584
N	346	F346L	ttC	ttG	2	2	B.1.177	0.000026
N	346	F346F	ttC	ttT	2	2	B.1.177.12	0.000303
N	346	F346F	ttC	ttT	2	2	B.1.177.54	0.001213
N	346	F346F	ttC	ttT	2	2	B.1.177.7	0.00033
N	346	F346F	ttC	ttT	2	2	B.1.177.87	0.001456
N	346	F346I	Ttc	Atc	1	2	B.1.221	0.000071
N	346	F346I	TtC	AtT	1	2	B.1.221	0.000071
N	346	F346F	ttC	ttT	2	2	B.1.336	0.004878
N	346	F346F	ttC	ttT	2	2	B.1.351.3	0.001753
N	346	F346F	ttC	ttT	2	2	B.1.416	0.002538
N	346	F346F	ttC	ttT	2	2	B.1.480	0.004975
N	346	F346F	ttC	ttT	2	2	B.1.530	0.014286
N	346	F346F	ttC	ttT	2	2	B.1.568	0.002222
N	346	F346F	ttC	ttT	2	2	B.1.610	0.007092
N	346	F346L	Ttc	Ctc	1	2	B.1.617.2	0.000004
N	346	F346L	ttC	ttA	1	2	B.1.617.2	0.000004
N	346	F346del1	ttC	tt-	2	2	B.1.627	0.00404
N	346	F346F	ttC	ttT	2	2	B.1.630	0.010471
N	346	F346F	ttC	ttT	2	2	B.1.631	0.006734
N	346	F346F	ttC	ttT	2	2	B.1.636	0.013423
N	346	F346F	ttC	ttT	2	2	B.1.93	0.001867
N	346	F346F	ttC	ttT	2	2	C.1.2	0.008511
N	346	F346F	ttC	ttT	2	2	C.16	0.002121
N	346	F346F	ttC	ttT	2	2	P.6	0.006289
N	346	F346L	Ttc	Ctc	2	2	U.3	0.007722
N	346	F346M	TtC	AtG	1	1		0.055556
N	346	F346W	tTC	tGG	1	1		0.055556
N	346	F346N	TTc	AAc	1	1		0.055556
N	346	F346K	TTC	AAG	1	1		0.055556
N	346	F346S	TTc	AGc	1	1		0.055556
N	346	F346R	TTC	AGG	1	1		0.055556
N	346	F346I	Ttc	Atc	1	1		0.055556
N	346	F346Y	tTc	tAc	1	1		0.055556
N	346	F346X	tTC	tAG	1	1		0.055556
N	346	F346C	tTc	tGc	1	1		0.055556
N	346	F346F	ttC	ttT	1	1	A.1	0.000282
N	346	F346F	ttC	ttT	1	1	A.2.2	0.001689
N	346	F346F	ttC	ttT	1	1	A.23.1	0.000704
N	346	F346F	ttC	ttT	1	1	AA.4	0.009091
N	346	F346F	ttC	ttT	1	1	AE.8	0.000489
N	346	F346W	tTC	tGG	1	1	All	0
N	346	F346E	TTC	GAA	1	1	All	0
N	346	F346K	TTC	AAG	1	1	All	0
N	346	F346M	TtC	AtG	1	1	All	0
N	346	F346X	tTC	tAG	1	1	All	0
N	346	F346C	tTc	tGc	1	1	All	0
N	346	F346R	TTC	AGG	1	1	All	0
N	346	F346F	ttC	ttT	1	1	AM.4	0.003571
N	346	F346F	ttC	ttT	1	1	AP.1	0.001502
N	346	F346F	ttC	ttT	1	1	AY.1	0.000396
N	346	F346del	TTC	---	1	1	AY.103	0.000006
N	346	F346F	ttC	ttT	1	1	AY.110	0.000113
N	346	F346F	ttC	ttT	1	1	AY.113	0.000142
N	346	F346F	ttC	ttT	1	1	AY.116	0.000287
N	346	F346L	ttC	ttG	1	1	AY.119	0.000035
N	346	F346F	ttC	ttT	1	1	AY.12	0.000316
N	346	F346F	ttC	ttT	1	1	AY.16.1	0.00047
N	346	F346V	Ttc	Gtc	1	1	AY.25	0.000006
N	346	F346F	ttC	ttT	1	1	AY.32	0.000532
N	346	F346S	tTc	tCc	1	1	AY.39.1	0.00004
N	346	F346del	TTC	---	1	1	AY.4	0.000002
N	346	F346I	Ttc	Atc	1	1	AY.4	0.000002
N	346	F346F	ttC	ttT	1	1	AY.4.2.1	0.000149
N	346	F346L	ttC	ttG	1	1	AY.43	0.000004
N	346	F346I	Ttc	Atc	1	1	AY.44	0.000006
N	346	F346del	TTC	---	1	1	AY.47	0.000031
N	346	F346Y	tTc	tAc	1	1	AY.5	0.000021
N	346	F346F	ttC	ttT	1	1	AY.55	0.000917
N	346	F346F	ttC	ttT	1	1	AY.57	0.000656
N	346	F346F	ttC	ttT	1	1	AY.63	0.000387
N	346	F346del	TTC	---	1	1	AY.67	0.000464
N	346	F346F	ttC	ttT	1	1	AY.68	0.000274
N	346	F346F	ttC	ttT	1	1	AY.71	0.000475
N	346	F346F	ttC	ttT	1	1	AY.74	0.000116
N	346	F346L	Ttc	Ctc	1	1	AY.74	0.000116
N	346	F346F	ttC	ttT	1	1	AY.79	0.001211
N	346	F346F	ttC	ttT	1	1	AY.85	0.000427
N	346	F346F	ttC	ttT	1	1	AY.88	0.000884
N	346	F346F	ttC	ttT	1	1	AY.89	0.004902
N	346	F346F	ttC	ttT	1	1	AY.94	0.000443
N	346	F346L	Ttc	Ctc	1	1	AY.98.1	0.000048
N	346	F346F	ttC	ttT	1	1	AY.99	0.001049
N	346	F346del	TTC	---	1	1	AY.99	0.001049
N	346	F346L	ttC	ttA	1	1	B	0.000128
N	346	F346F	ttC	ttT	1	1	B	0.000128
N	346	F346Y	tTc	tAc	1	1	B.1	0.000009
N	346	F346del	TTC	---	1	1	B.1	0.000009
N	346	F346I	Ttc	Atc	1	1	B.1	0.000009
N	346	F346del	TTC	---	1	1	B.1.1	0.000018
N	346	F346L	Ttc	Ctc	1	1	B.1.1	0.000018
N	346	F346N	TTc	AAc	1	1	B.1.1	0.000018
N	346	F346E	TTC	GAA	1	1	B.1.1	0.000018
N	346	F346del	TTC	---	1	1	B.1.1.139	0.022727
N	346	F346F	ttC	ttT	1	1	B.1.1.174	0.003378
N	346	F346del	TTC	---	1	1	B.1.1.217	0.003636
N	346	F346F	ttC	ttT	1	1	B.1.1.218	0.007692
N	346	F346F	ttC	ttT	1	1	B.1.1.237	0.005405
N	346	F346Y	tTc	tAc	1	1	B.1.1.27	0.00565
N	346	F346F	ttC	ttT	1	1	B.1.1.277	0.000759
N	346	F346F	ttC	ttT	1	1	B.1.1.294	0.001266
N	346	F346F	ttC	ttT	1	1	B.1.1.304	0.002809
N	346	F346F	ttC	ttT	1	1	B.1.1.305	0.003861
N	346	F346F	ttC	ttT	1	1	B.1.1.316	0.000925
N	346	F346F	ttC	ttT	1	1	B.1.1.326	0.001761
N	346	F346F	ttC	ttT	1	1	B.1.1.348	0.000796
N	346	F346F	ttC	ttT	1	1	B.1.1.349	0.010309
N	346	F346F	ttC	ttT	1	1	B.1.1.375	0.011905
N	346	F346F	ttC	ttT	1	1	B.1.1.397	0.002252
N	346	F346F	ttC	ttT	1	1	B.1.1.411	0.014706
N	346	F346F	ttC	ttT	1	1	B.1.1.412	0.007634
N	346	F346F	ttC	ttT	1	1	B.1.1.46	0.004367
N	346	F346F	ttC	ttT	1	1	B.1.1.48	0.002874
N	346	F346F	ttC	ttT	1	1	B.1.1.483	0.038462
N	346	F346del	TTC	---	1	1	B.1.1.519	0.00004
N	346	F346F	ttC	ttT	1	1	B.1.1.59	0.006494
N	346	F346S	tTc	tCc	1	1	B.1.1.7	0.000001
N	346	F346F	ttC	ttT	1	1	B.1.1.70	0.000341
N	346	F346F	ttC	ttT	1	1	B.1.1.89	0.006061
N	346	F346F	ttC	ttT	1	1	B.1.1.99	0.02381
N	346	F346F	ttC	ttT	1	1	B.1.113	0.015625
N	346	F346F	ttC	ttT	1	1	B.1.128	0.000635
N	346	F346F	ttC	ttT	1	1	B.1.157	0.002985
N	346	F346F	ttC	ttT	1	1	B.1.160.30	0.002976
N	346	F346F	ttC	ttT	1	1	B.1.163	0.02439
N	346	F346F	ttC	ttT	1	1	B.1.177.10	0.000878
N	346	F346F	ttC	ttT	1	1	B.1.177.4	0.000211
N	346	F346F	ttC	ttT	1	1	B.1.177.44	0.000519
N	346	F346del	TTC	---	1	1	B.1.177.45	0.000381
N	346	F346F	ttC	ttT	1	1	B.1.177.46	0.000918
N	346	F346F	ttC	ttT	1	1	B.1.177.57	0.000281
N	346	F346L	TtC	CtA	1	1	B.1.177.63	0.002703
N	346	F346F	ttC	ttT	1	1	B.1.177.73	0.000566
N	346	F346F	ttC	ttT	1	1	B.1.177.74	0.015152
N	346	F346F	ttC	ttT	1	1	B.1.189	0.004292
N	346	F346F	ttC	ttT	1	1	B.1.214	0.003663
N	346	F346F	ttC	ttT	1	1	B.1.241	0.000812
N	346	F346F	ttC	ttT	1	1	B.1.258.11	0.000396
N	346	F346F	ttC	ttT	1	1	B.1.258.16	0.001637
N	346	F346F	ttC	ttT	1	1	B.1.258.3	0.001675
N	346	F346F	ttC	ttT	1	1	B.1.260	0.003344
N	346	F346del	TTC	---	1	1	B.1.287	0.030303
N	346	F346F	ttC	ttT	1	1	B.1.320	0.001245
N	346	F346F	ttC	ttT	1	1	B.1.324	0.001605
N	346	F346F	ttC	ttT	1	1	B.1.329	0.000608
N	346	F346I	TtC	AtA	1	1	B.1.332	0.003497
N	346	F346F	ttC	ttT	1	1	B.1.348	0.018182
N	346	F346F	ttC	ttT	1	1	B.1.349	0.000715
N	346	F346del	TTC	---	1	1	B.1.351	0.00003
N	346	F346L	ttC	ttG	1	1	B.1.351	0.00003
N	346	F346F	ttC	ttT	1	1	B.1.351.2	0.000303
N	346	F346F	ttC	ttT	1	1	B.1.359	0.022727
N	346	F346F	ttC	ttT	1	1	B.1.36.17	0.000494
N	346	F346F	ttC	ttT	1	1	B.1.36.18	0.00042
N	346	F346F	ttC	ttT	1	1	B.1.36.22	0.001208
N	346	F346F	ttC	ttT	1	1	B.1.36.31	0.001751
N	346	F346F	ttC	ttT	1	1	B.1.36.36	0.000602
N	346	F346F	ttC	ttT	1	1	B.1.369	0.000285
N	346	F346F	ttC	ttT	1	1	B.1.380	0.006623
N	346	F346F	ttC	ttT	1	1	B.1.396	0.000706
N	346	F346F	ttC	ttT	1	1	B.1.397	0.004854
N	346	F346F	ttC	ttT	1	1	B.1.398	0.002976
N	346	F346F	ttC	ttT	1	1	B.1.399	0.001934
N	346	F346del	TTC	---	1	1	B.1.400	0.000429
N	346	F346S	tTc	tCc	1	1	B.1.400	0.000429
N	346	F346del	TTC	---	1	1	B.1.415	0.014286
N	346	F346S	tTc	tCc	1	1	B.1.429	0.000024
N	346	F346F	ttC	ttT	1	1	B.1.438.1	0.000107
N	346	F346F	ttC	ttT	1	1	B.1.453	0.003236
N	346	F346F	ttC	ttT	1	1	B.1.460	0.017857
N	346	F346F	ttC	ttT	1	1	B.1.466.2	0.000391
N	346	F346F	ttC	ttT	1	1	B.1.499	0.00105
N	346	F346L	ttC	ttA	1	1	B.1.509	0.000866
N	346	F346F	ttC	ttT	1	1	B.1.517	0.000427
N	346	F346L	ttC	ttA	1	1	B.1.526	0.000024
N	346	F346F	ttC	ttT	1	1	B.1.527	0.003704
N	346	F346F	ttC	ttT	1	1	B.1.533	0.009615
N	346	F346F	ttC	ttT	1	1	B.1.551	0.00129
N	346	F346F	ttC	ttT	1	1	B.1.558	0.004566
N	346	F346F	ttC	ttT	1	1	B.1.576	0.000907
N	346	F346F	ttC	ttT	1	1	B.1.578	0.017857
N	346	F346F	ttC	ttT	1	1	B.1.588	0.00091
N	346	F346F	ttC	ttT	1	1	B.1.597	0.00463
N	346	F346F	ttC	ttT	1	1	B.1.617.1	0.000129
N	346	F346V	Ttc	Gtc	1	1	B.1.617.2	0.000004
N	346	F346del	TTC	---	1	1	B.1.617.2	0.000004
N	346	F346F	ttC	ttT	1	1	B.1.619	0.000871
N	346	F346F	ttC	ttT	1	1	B.1.620	0.000946
N	346	F346F	ttC	ttT	1	1	B.1.625	0.002353
N	346	F346del	TTC	---	1	1	B.1.630	0.005236
N	346	F346L	Ttc	Ctc	1	1	B.1.637	0.000073
N	346	F346F	ttC	ttT	1	1	B.1.69	0.035714
N	346	F346F	ttC	ttT	1	1	B.1.9	0.006173
N	346	F346F	ttC	ttT	1	1	B.3	0.000831
N	346	F346F	ttC	ttT	1	1	B.4	0.002208
N	346	F346F	ttC	ttT	1	1	B.4.8	0.071429
N	346	F346F	ttC	ttT	1	1	B.40	0.000364
N	346	F346F	ttC	ttT	1	1	C.23	0.005814
N	346	F346F	ttC	ttT	1	1	C.30	0.001727
N	346	F346F	ttC	ttT	1	1	C.36.3	0.000567
N	346	F346L	Ttc	Ctc	1	1	C.36.3	0.000567
N	346	F346F	ttC	ttT	1	1	C.36.3.1	0.002717
N	346	F346L	ttC	ttA	1	1	D.2	0.000075
N	346	F346F	ttC	ttT	1	1	N.1	0.016949
N	346	F346F	ttC	ttT	1	1	N.6	0.007092
N	346	F346F	ttC	ttT	1	1	P.1.1	0.000318
N	346	F346F	ttC	ttT	1	1	P.1.2	0.001156
N	346	F346F	ttC	ttT	1	1	P.1.7	0.000319
N	346	F346F	ttC	ttT	1	1	P.1.9	0.004808
N	346	F346F	ttC	ttT	1	1	Q.5	0.016949
N	346	F346F	ttC	ttT	1	1	Q.7	0.001111
N	346	F346F	ttC	ttT	1	1	W.2	0.004831

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.