CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 346

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N346F346FsynttCttT2177721777129309-29311
N346F346LnonsynttCttA85330.38823529309-29311
N346F346LnonsynTtcCtc85310.36470629309-29311
N346F346LnonsynttCttG85200.23529429309-29311
N346F346LnonsynTtCCtA8510.011764729309-29311
N346F346SnonsyntTctCc25240.9629309-29311
N346F346SnonsynTTcAGc2510.0429309-29311
N346F346deldelTTC---2121129309-29311
N346F346InonsynTtcAtc750.71428629309-29311
N346F346InonsynTtCAtA710.14285729309-29311
N346F346InonsynTtCAtT710.14285729309-29311
N346F346YnonsyntTctAc44129309-29311
N346F346del1delttCtt-22129309-29311
N346F346VnonsynTtcGtc22129309-29311
N346F346NnonsynTTcAAc22129309-29311
N346F346WnonsyntTCtGG11129309-29311
N346F346EnonsynTTCGAA11129309-29311
N346F346KnonsynTTCAAG11129309-29311
N346F346RnonsynTTCAGG11129309-29311
N346F346MnonsynTtCAtG11129309-29311
N346F346XnonsyntTCtAG11129309-29311
N346F346CnonsyntTctGc11129309-29311

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N346F346FttCttT2177721777All0.004165
N346F346FttCttT84068406C.370.975627
N346F346FttCttT22922292B.1.1.70.002052
N346F346FttCttT21372137AY.390.052808
N346F346FttCttT661661AY.430.002929
N346F346FttCttT494494AY.40.000769
N346F346FttCttT440440AY.440.002678
N346F346FttCttT402402B.1.4700.564607
N346F346FttCttT396396AY.9.20.014545
N346F346FttCttT350350B.1.20.003082
N346F346FttCttT341341C.37.10.89267
N346F346FttCttT336336B.1.360.049022
N346F346FttCttT322322B.1.617.20.001212
N346F346FttCttT226226AY.1030.001403
N346F346FttCttT206206B.1.4270.010402
N346F346FttCttT201201B.1.1.5190.007982
N346F346FttCttT199199B.1.5260.004677
N346F346FttCttT197197AY.1190.006956
N346F346FttCttT184184B.1.2390.224664
N346F346FttCttT177177AY.98.10.008572
N346F346FttCttT176176B.10.001612
N346F346FttCttT167167P.10.002631
N346F346FttCttT156156B.1.1.3620.876404
N346F346FttCttT145145B.1.1.370.027965
N346F346FttCttT143143B.1.1770.001883
N346F346FttCttT130130B.1.1.4130.896552
N346F346FttCttT128128AY.420.005149
N346F346FttCttT118118AY.250.00071
N346F346FttCttT117117AY.1180.00733
N346F346FttCttT9898B.1.10.001778
N346F346FttCttT9595B.1.6210.008409
N346F346LttCttA3385All0.000006
N346F346LTtcCtc3185All0.000006
N346F346LttCttG2085All0.000004
N346F346LTtCCtA185All0
N346F346FttCttT8282AY.1020.002174
N346F346FttCttT7979AY.39.10.003129
N346F346FttCttT7575B.1.4290.001765
N346F346FttCttT6969AY.1000.003174
N346F346FttCttT6464AY.230.004464
N346F346FttCttT6060B.1.36.290.03104
N346F346FttCttT5858B.1.1.4320.073418
N346F346FttCttT5656B.1.1.1570.051142
N346F346FttCttT5656B.1.3510.001665
N346F346FttCttT5050B.1.6370.003654
N346F346FttCttT4949AY.50.001012
N346F346FttCttT4747AY.30.000467
N346F346FttCttT4141AY.200.001593
N346F346FttCttT3838B.1.2060.030995
N346F346FttCttT3434Q.80.005607
N346F346FttCttT3333B.1.1.4340.011502
N346F346FttCttT3232AY.46.40.005264
N346F346FttCttT3030AY.46.20.01906
N346F346FttCttT2929AY.290.000457
N346F346FttCttT2929AY.330.001937
N346F346FttCttT2929B.1.2210.00206
N346F346FttCttT2828AY.1200.001041
N346F346FttCttT2828AY.4.20.000607
N346F346FttCttT2828B.1.1.280.008715
N346F346FttCttT2727AY.260.000764
N346F346StTctCc2425All0.000005
N346F346STTcAGc125All0
N346F346FttCttT2525B.1.2580.001664
N346F346FttCttT2424B.1.2430.00167
N346F346FttCttT2323B.1.1600.000717
N346F346FttCttT2222B.1.1.2140.00122
N346F346FttCttT2222B.1.5770.01512
N346F346delTTC---2121All0.000004
N346F346FttCttT2121AY.1010.010299
N346F346FttCttT2121AY.46.60.001516
N346F346FttCttT2121B.1.1.2800.064815
N346F346FttCttT2121B.1.5960.00183
N346F346FttCttT2020AY.60.000823
N346F346FttCttT2020AY.610.002096
N346F346FttCttT2020AY.90.001352
N346F346FttCttT1919AY.750.001064
N346F346FttCttT1818AY.99.20.001659
N346F346FttCttT1717AY.116.10.005294
N346F346FttCttT1616B.1.1.1760.00703
N346F346FttCttT1616B.1.1.3720.011019
N346F346FttCttT1616R.10.00144
N346F346FttCttT1515AY.150.033333
N346F346FttCttT1414AY.470.000435
N346F346FttCttT1414AY.560.022472
N346F346FttCttT1414B.1.4000.006006
N346F346FttCttT1414P.1.140.000669
N346F346FttCttT1313B.1.2340.001715
N346F346FttCttT1313B.1.6090.006232
N346F346LttCttA1313Q.10.001642
N346F346FttCttT1212AY.340.001164
N346F346LttCttG1212AY.40.000019
N346F346FttCttT1212AY.460.001249
N346F346LTtcCtc1212B.1.1.70.000011
N346F346FttCttT1212P.20.00224
N346F346StTctCc1111AY.40.000017
N346F346FttCttT1111B.1.1.2160.009795
N346F346FttCttT1111B.1.1.2220.002244
N346F346FttCttT1111B.1.3460.014417
N346F346FttCttT1111D.20.000825
N346F346FttCttT1111P.1.100.002964
N346F346FttCttT1111P.1.130.009883
N346F346FttCttT1111Q.30.001595
N346F346FttCttT1010AY.160.003797
N346F346FttCttT1010B.1.177.820.004773
N346F346FttCttT1010B.1.5750.003034
N346F346FttCttT1010P.1.150.002323
N346F346FttCttT1010P.1.170.001618
N346F346FttCttT99A.210.024931
N346F346FttCttT99AY.1060.003014
N346F346LttCttA89AY.39.10.000317
N346F346LTtcCtc19AY.39.10.00004
N346F346FttCttT99AY.980.000711
N346F346LttCttA59B.10.000046
N346F346LTtcCtc49B.10.000037
N346F346FttCttT99B.1.5250.001018
N346F346FttCttT88AY.730.005323
N346F346FttCttT88B.1.1.1530.008762
N346F346FttCttT88B.1.1.3180.002414
N346F346FttCttT88B.1.177.830.011852
N346F346FttCttT88B.1.6230.004292
N346F346FttCttT88P.1.40.007812
N346F346ITtcAtc57All0.000001
N346F346ITtCAtA17All0
N346F346ITtCAtT17All0
N346F346FttCttT77AY.1170.000592
N346F346FttCttT77AY.4.50.000752
N346F346FttCttT77AY.5.30.002362
N346F346FttCttT77AY.920.002011
N346F346FttCttT77B.1.1.2840.000752
N346F346FttCttT77B.1.1.5230.010937
N346F346FttCttT77B.1.177.210.000535
N346F346FttCttT77B.1.177.600.001529
N346F346FttCttT77B.1.177.810.001325
N346F346FttCttT77B.1.621.10.003541
N346F346FttCttT77C.140.030303
N346F346FttCttT77Q.40.003183
N346F346FttCttT66AY.930.001638
N346F346FttCttT66AZ.40.020134
N346F346FttCttT66B.1.1.330.002525
N346F346FttCttT66B.1.1.500.004073
N346F346FttCttT66B.1.1.630.002315
N346F346FttCttT66B.1.258.170.000624
N346F346FttCttT55AY.1210.000677
N346F346FttCttT55AY.20.001781
N346F346LTtcCtc55AY.290.000079
N346F346FttCttT55AY.46.50.000992
N346F346FttCttT55B.1.1.10.001633
N346F346FttCttT55B.1.1.3690.002231
N346F346FttCttT55B.1.1620.025126
N346F346FttCttT55B.1.3110.001373
N346F346FttCttT55B.1.36.100.023923
N346F346FttCttT55B.1.5990.018248
N346F346FttCttT55B.1.6280.001762
N346F346FttCttT55C.350.00387
N346F346FttCttT44A.2.50.001996
N346F346YtTctAc44All0.000001
N346F346FttCttT44AY.1070.001864
N346F346FttCttT44AY.1110.000733
N346F346FttCttT44AY.360.000593
N346F346FttCttT44AY.450.000487
N346F346FttCttT44AY.900.002738
N346F346FttCttT44B.1.1.3060.001754
N346F346FttCttT44B.1.1.3170.001647
N346F346FttCttT44B.1.1.5210.02139
N346F346FttCttT44B.1.1110.0047
N346F346FttCttT44B.1.177.750.004162
N346F346FttCttT44B.1.3560.006908
N346F346FttCttT44B.1.36.260.011429
N346F346FttCttT33AY.130.000483
N346F346FttCttT33AY.140.000264
N346F346FttCttT33AY.240.001293
N346F346FttCttT33AY.270.000194
N346F346FttCttT33AY.3.10.000256
N346F346FttCttT33AY.300.001187
N346F346FttCttT33AY.370.000948
N346F346StTctCc33AY.390.000074
N346F346FttCttT33AY.39.1.10.002174
N346F346StTctCc33AY.440.000018
N346F346FttCttT33AY.510.002727
N346F346FttCttT33AY.540.000286
N346F346FttCttT33AY.590.001589
N346F346FttCttT33AY.70.000588
N346F346FttCttT33AY.75.10.000541
N346F346FttCttT33AY.870.002498
N346F346FttCttT33AZ.30.004559
N346F346StTctCc33B.10.000027
N346F346FttCttT33B.1.1.2630.004673
N346F346FttCttT33B.1.1.3120.005736
N346F346FttCttT33B.1.1.5280.014423
N346F346FttCttT33B.1.177.860.00055
N346F346FttCttT33B.1.3050.006452
N346F346FttCttT33B.1.4970.000944
N346F346FttCttT33B.1.9.50.017045
N346F346FttCttT33P.1.120.001452
N346F346delTTC---220.111111
N346F346LttCttG120.055556
N346F346LttCttA120.055556
N346F346FttCttT22A.280.005291
N346F346NTTcAAc22All0
N346F346VTtcGtc22All0
N346F346del1ttCtt-22All0
N346F346LTtcCtc12AY.1030.000006
N346F346LttCttA12AY.1030.000006
N346F346FttCttT22AY.34.10.00102
N346F346FttCttT22AY.350.000466
N346F346FttCttT22AY.380.000999
N346F346FttCttT22AY.410.000588
N346F346FttCttT22AY.620.000871
N346F346FttCttT22AY.640.00119
N346F346FttCttT22AY.7.10.000225
N346F346FttCttT22AY.970.003401
N346F346FttCttT22B.1.1.2200.003717
N346F346FttCttT22B.1.1.250.001137
N346F346LttCttG22B.1.1.3180.000604
N346F346delTTC---22B.1.1.70.000002
N346F346FttCttT22B.1.160.320.008584
N346F346LttCttG22B.1.1770.000026
N346F346FttCttT22B.1.177.120.000303
N346F346FttCttT22B.1.177.540.001213
N346F346FttCttT22B.1.177.70.00033
N346F346FttCttT22B.1.177.870.001456
N346F346ITtcAtc12B.1.2210.000071
N346F346ITtCAtT12B.1.2210.000071
N346F346FttCttT22B.1.3360.004878
N346F346FttCttT22B.1.351.30.001753
N346F346FttCttT22B.1.4160.002538
N346F346FttCttT22B.1.4800.004975
N346F346FttCttT22B.1.5300.014286
N346F346FttCttT22B.1.5680.002222
N346F346FttCttT22B.1.6100.007092
N346F346LTtcCtc12B.1.617.20.000004
N346F346LttCttA12B.1.617.20.000004
N346F346del1ttCtt-22B.1.6270.00404
N346F346FttCttT22B.1.6300.010471
N346F346FttCttT22B.1.6310.006734
N346F346FttCttT22B.1.6360.013423
N346F346FttCttT22B.1.930.001867
N346F346FttCttT22C.1.20.008511
N346F346FttCttT22C.160.002121
N346F346FttCttT22P.60.006289
N346F346LTtcCtc22U.30.007722
N346F346MTtCAtG110.055556
N346F346WtTCtGG110.055556
N346F346NTTcAAc110.055556
N346F346KTTCAAG110.055556
N346F346STTcAGc110.055556
N346F346RTTCAGG110.055556
N346F346ITtcAtc110.055556
N346F346YtTctAc110.055556
N346F346XtTCtAG110.055556
N346F346CtTctGc110.055556
N346F346FttCttT11A.10.000282
N346F346FttCttT11A.2.20.001689
N346F346FttCttT11A.23.10.000704
N346F346FttCttT11AA.40.009091
N346F346FttCttT11AE.80.000489
N346F346WtTCtGG11All0
N346F346ETTCGAA11All0
N346F346KTTCAAG11All0
N346F346MTtCAtG11All0
N346F346XtTCtAG11All0
N346F346CtTctGc11All0
N346F346RTTCAGG11All0
N346F346FttCttT11AM.40.003571
N346F346FttCttT11AP.10.001502
N346F346FttCttT11AY.10.000396
N346F346delTTC---11AY.1030.000006
N346F346FttCttT11AY.1100.000113
N346F346FttCttT11AY.1130.000142
N346F346FttCttT11AY.1160.000287
N346F346LttCttG11AY.1190.000035
N346F346FttCttT11AY.120.000316
N346F346FttCttT11AY.16.10.00047
N346F346VTtcGtc11AY.250.000006
N346F346FttCttT11AY.320.000532
N346F346StTctCc11AY.39.10.00004
N346F346delTTC---11AY.40.000002
N346F346ITtcAtc11AY.40.000002
N346F346FttCttT11AY.4.2.10.000149
N346F346LttCttG11AY.430.000004
N346F346ITtcAtc11AY.440.000006
N346F346delTTC---11AY.470.000031
N346F346YtTctAc11AY.50.000021
N346F346FttCttT11AY.550.000917
N346F346FttCttT11AY.570.000656
N346F346FttCttT11AY.630.000387
N346F346delTTC---11AY.670.000464
N346F346FttCttT11AY.680.000274
N346F346FttCttT11AY.710.000475
N346F346FttCttT11AY.740.000116
N346F346LTtcCtc11AY.740.000116
N346F346FttCttT11AY.790.001211
N346F346FttCttT11AY.850.000427
N346F346FttCttT11AY.880.000884
N346F346FttCttT11AY.890.004902
N346F346FttCttT11AY.940.000443
N346F346LTtcCtc11AY.98.10.000048
N346F346FttCttT11AY.990.001049
N346F346delTTC---11AY.990.001049
N346F346LttCttA11B0.000128
N346F346FttCttT11B0.000128
N346F346YtTctAc11B.10.000009
N346F346delTTC---11B.10.000009
N346F346ITtcAtc11B.10.000009
N346F346delTTC---11B.1.10.000018
N346F346LTtcCtc11B.1.10.000018
N346F346NTTcAAc11B.1.10.000018
N346F346ETTCGAA11B.1.10.000018
N346F346delTTC---11B.1.1.1390.022727
N346F346FttCttT11B.1.1.1740.003378
N346F346delTTC---11B.1.1.2170.003636
N346F346FttCttT11B.1.1.2180.007692
N346F346FttCttT11B.1.1.2370.005405
N346F346YtTctAc11B.1.1.270.00565
N346F346FttCttT11B.1.1.2770.000759
N346F346FttCttT11B.1.1.2940.001266
N346F346FttCttT11B.1.1.3040.002809
N346F346FttCttT11B.1.1.3050.003861
N346F346FttCttT11B.1.1.3160.000925
N346F346FttCttT11B.1.1.3260.001761
N346F346FttCttT11B.1.1.3480.000796
N346F346FttCttT11B.1.1.3490.010309
N346F346FttCttT11B.1.1.3750.011905
N346F346FttCttT11B.1.1.3970.002252
N346F346FttCttT11B.1.1.4110.014706
N346F346FttCttT11B.1.1.4120.007634
N346F346FttCttT11B.1.1.460.004367
N346F346FttCttT11B.1.1.480.002874
N346F346FttCttT11B.1.1.4830.038462
N346F346delTTC---11B.1.1.5190.00004
N346F346FttCttT11B.1.1.590.006494
N346F346StTctCc11B.1.1.70.000001
N346F346FttCttT11B.1.1.700.000341
N346F346FttCttT11B.1.1.890.006061
N346F346FttCttT11B.1.1.990.02381
N346F346FttCttT11B.1.1130.015625
N346F346FttCttT11B.1.1280.000635
N346F346FttCttT11B.1.1570.002985
N346F346FttCttT11B.1.160.300.002976
N346F346FttCttT11B.1.1630.02439
N346F346FttCttT11B.1.177.100.000878
N346F346FttCttT11B.1.177.40.000211
N346F346FttCttT11B.1.177.440.000519
N346F346delTTC---11B.1.177.450.000381
N346F346FttCttT11B.1.177.460.000918
N346F346FttCttT11B.1.177.570.000281
N346F346LTtCCtA11B.1.177.630.002703
N346F346FttCttT11B.1.177.730.000566
N346F346FttCttT11B.1.177.740.015152
N346F346FttCttT11B.1.1890.004292
N346F346FttCttT11B.1.2140.003663
N346F346FttCttT11B.1.2410.000812
N346F346FttCttT11B.1.258.110.000396
N346F346FttCttT11B.1.258.160.001637
N346F346FttCttT11B.1.258.30.001675
N346F346FttCttT11B.1.2600.003344
N346F346delTTC---11B.1.2870.030303
N346F346FttCttT11B.1.3200.001245
N346F346FttCttT11B.1.3240.001605
N346F346FttCttT11B.1.3290.000608
N346F346ITtCAtA11B.1.3320.003497
N346F346FttCttT11B.1.3480.018182
N346F346FttCttT11B.1.3490.000715
N346F346delTTC---11B.1.3510.00003
N346F346LttCttG11B.1.3510.00003
N346F346FttCttT11B.1.351.20.000303
N346F346FttCttT11B.1.3590.022727
N346F346FttCttT11B.1.36.170.000494
N346F346FttCttT11B.1.36.180.00042
N346F346FttCttT11B.1.36.220.001208
N346F346FttCttT11B.1.36.310.001751
N346F346FttCttT11B.1.36.360.000602
N346F346FttCttT11B.1.3690.000285
N346F346FttCttT11B.1.3800.006623
N346F346FttCttT11B.1.3960.000706
N346F346FttCttT11B.1.3970.004854
N346F346FttCttT11B.1.3980.002976
N346F346FttCttT11B.1.3990.001934
N346F346delTTC---11B.1.4000.000429
N346F346StTctCc11B.1.4000.000429
N346F346delTTC---11B.1.4150.014286
N346F346StTctCc11B.1.4290.000024
N346F346FttCttT11B.1.438.10.000107
N346F346FttCttT11B.1.4530.003236
N346F346FttCttT11B.1.4600.017857
N346F346FttCttT11B.1.466.20.000391
N346F346FttCttT11B.1.4990.00105
N346F346LttCttA11B.1.5090.000866
N346F346FttCttT11B.1.5170.000427
N346F346LttCttA11B.1.5260.000024
N346F346FttCttT11B.1.5270.003704
N346F346FttCttT11B.1.5330.009615
N346F346FttCttT11B.1.5510.00129
N346F346FttCttT11B.1.5580.004566
N346F346FttCttT11B.1.5760.000907
N346F346FttCttT11B.1.5780.017857
N346F346FttCttT11B.1.5880.00091
N346F346FttCttT11B.1.5970.00463
N346F346FttCttT11B.1.617.10.000129
N346F346VTtcGtc11B.1.617.20.000004
N346F346delTTC---11B.1.617.20.000004
N346F346FttCttT11B.1.6190.000871
N346F346FttCttT11B.1.6200.000946
N346F346FttCttT11B.1.6250.002353
N346F346delTTC---11B.1.6300.005236
N346F346LTtcCtc11B.1.6370.000073
N346F346FttCttT11B.1.690.035714
N346F346FttCttT11B.1.90.006173
N346F346FttCttT11B.30.000831
N346F346FttCttT11B.40.002208
N346F346FttCttT11B.4.80.071429
N346F346FttCttT11B.400.000364
N346F346FttCttT11C.230.005814
N346F346FttCttT11C.300.001727
N346F346FttCttT11C.36.30.000567
N346F346LTtcCtc11C.36.30.000567
N346F346FttCttT11C.36.3.10.002717
N346F346LttCttA11D.20.000075
N346F346FttCttT11N.10.016949
N346F346FttCttT11N.60.007092
N346F346FttCttT11P.1.10.000318
N346F346FttCttT11P.1.20.001156
N346F346FttCttT11P.1.70.000319
N346F346FttCttT11P.1.90.004808
N346F346FttCttT11Q.50.016949
N346F346FttCttT11Q.70.001111
N346F346FttCttT11W.20.004831