CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 346 | F346F | syn | ttC | ttT | 21777 | 21777 | 1 | 29309-29311 | |
N | 346 | F346L | nonsyn | ttC | ttA | 85 | 33 | 0.388235 | 29309-29311 | |
N | 346 | F346L | nonsyn | Ttc | Ctc | 85 | 31 | 0.364706 | 29309-29311 | |
N | 346 | F346L | nonsyn | ttC | ttG | 85 | 20 | 0.235294 | 29309-29311 | |
N | 346 | F346L | nonsyn | TtC | CtA | 85 | 1 | 0.0117647 | 29309-29311 | |
N | 346 | F346S | nonsyn | tTc | tCc | 25 | 24 | 0.96 | 29309-29311 | |
N | 346 | F346S | nonsyn | TTc | AGc | 25 | 1 | 0.04 | 29309-29311 | |
N | 346 | F346del | del | TTC | --- | 21 | 21 | 1 | 29309-29311 | |
N | 346 | F346I | nonsyn | Ttc | Atc | 7 | 5 | 0.714286 | 29309-29311 | |
N | 346 | F346I | nonsyn | TtC | AtA | 7 | 1 | 0.142857 | 29309-29311 | |
N | 346 | F346I | nonsyn | TtC | AtT | 7 | 1 | 0.142857 | 29309-29311 | |
N | 346 | F346Y | nonsyn | tTc | tAc | 4 | 4 | 1 | 29309-29311 | |
N | 346 | F346del1 | del | ttC | tt- | 2 | 2 | 1 | 29309-29311 | |
N | 346 | F346V | nonsyn | Ttc | Gtc | 2 | 2 | 1 | 29309-29311 | |
N | 346 | F346N | nonsyn | TTc | AAc | 2 | 2 | 1 | 29309-29311 | |
N | 346 | F346W | nonsyn | tTC | tGG | 1 | 1 | 1 | 29309-29311 | |
N | 346 | F346E | nonsyn | TTC | GAA | 1 | 1 | 1 | 29309-29311 | |
N | 346 | F346K | nonsyn | TTC | AAG | 1 | 1 | 1 | 29309-29311 | |
N | 346 | F346R | nonsyn | TTC | AGG | 1 | 1 | 1 | 29309-29311 | |
N | 346 | F346M | nonsyn | TtC | AtG | 1 | 1 | 1 | 29309-29311 | |
N | 346 | F346X | nonsyn | tTC | tAG | 1 | 1 | 1 | 29309-29311 | |
N | 346 | F346C | nonsyn | tTc | tGc | 1 | 1 | 1 | 29309-29311 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 346 | F346F | ttC | ttT | 21777 | 21777 | All | 0.004165 |
N | 346 | F346F | ttC | ttT | 8406 | 8406 | C.37 | 0.975627 |
N | 346 | F346F | ttC | ttT | 2292 | 2292 | B.1.1.7 | 0.002052 |
N | 346 | F346F | ttC | ttT | 2137 | 2137 | AY.39 | 0.052808 |
N | 346 | F346F | ttC | ttT | 661 | 661 | AY.43 | 0.002929 |
N | 346 | F346F | ttC | ttT | 494 | 494 | AY.4 | 0.000769 |
N | 346 | F346F | ttC | ttT | 440 | 440 | AY.44 | 0.002678 |
N | 346 | F346F | ttC | ttT | 402 | 402 | B.1.470 | 0.564607 |
N | 346 | F346F | ttC | ttT | 396 | 396 | AY.9.2 | 0.014545 |
N | 346 | F346F | ttC | ttT | 350 | 350 | B.1.2 | 0.003082 |
N | 346 | F346F | ttC | ttT | 341 | 341 | C.37.1 | 0.89267 |
N | 346 | F346F | ttC | ttT | 336 | 336 | B.1.36 | 0.049022 |
N | 346 | F346F | ttC | ttT | 322 | 322 | B.1.617.2 | 0.001212 |
N | 346 | F346F | ttC | ttT | 226 | 226 | AY.103 | 0.001403 |
N | 346 | F346F | ttC | ttT | 206 | 206 | B.1.427 | 0.010402 |
N | 346 | F346F | ttC | ttT | 201 | 201 | B.1.1.519 | 0.007982 |
N | 346 | F346F | ttC | ttT | 199 | 199 | B.1.526 | 0.004677 |
N | 346 | F346F | ttC | ttT | 197 | 197 | AY.119 | 0.006956 |
N | 346 | F346F | ttC | ttT | 184 | 184 | B.1.239 | 0.224664 |
N | 346 | F346F | ttC | ttT | 177 | 177 | AY.98.1 | 0.008572 |
N | 346 | F346F | ttC | ttT | 176 | 176 | B.1 | 0.001612 |
N | 346 | F346F | ttC | ttT | 167 | 167 | P.1 | 0.002631 |
N | 346 | F346F | ttC | ttT | 156 | 156 | B.1.1.362 | 0.876404 |
N | 346 | F346F | ttC | ttT | 145 | 145 | B.1.1.37 | 0.027965 |
N | 346 | F346F | ttC | ttT | 143 | 143 | B.1.177 | 0.001883 |
N | 346 | F346F | ttC | ttT | 130 | 130 | B.1.1.413 | 0.896552 |
N | 346 | F346F | ttC | ttT | 128 | 128 | AY.42 | 0.005149 |
N | 346 | F346F | ttC | ttT | 118 | 118 | AY.25 | 0.00071 |
N | 346 | F346F | ttC | ttT | 117 | 117 | AY.118 | 0.00733 |
N | 346 | F346F | ttC | ttT | 98 | 98 | B.1.1 | 0.001778 |
N | 346 | F346F | ttC | ttT | 95 | 95 | B.1.621 | 0.008409 |
N | 346 | F346L | ttC | ttA | 33 | 85 | All | 0.000006 |
N | 346 | F346L | Ttc | Ctc | 31 | 85 | All | 0.000006 |
N | 346 | F346L | ttC | ttG | 20 | 85 | All | 0.000004 |
N | 346 | F346L | TtC | CtA | 1 | 85 | All | 0 |
N | 346 | F346F | ttC | ttT | 82 | 82 | AY.102 | 0.002174 |
N | 346 | F346F | ttC | ttT | 79 | 79 | AY.39.1 | 0.003129 |
N | 346 | F346F | ttC | ttT | 75 | 75 | B.1.429 | 0.001765 |
N | 346 | F346F | ttC | ttT | 69 | 69 | AY.100 | 0.003174 |
N | 346 | F346F | ttC | ttT | 64 | 64 | AY.23 | 0.004464 |
N | 346 | F346F | ttC | ttT | 60 | 60 | B.1.36.29 | 0.03104 |
N | 346 | F346F | ttC | ttT | 58 | 58 | B.1.1.432 | 0.073418 |
N | 346 | F346F | ttC | ttT | 56 | 56 | B.1.1.157 | 0.051142 |
N | 346 | F346F | ttC | ttT | 56 | 56 | B.1.351 | 0.001665 |
N | 346 | F346F | ttC | ttT | 50 | 50 | B.1.637 | 0.003654 |
N | 346 | F346F | ttC | ttT | 49 | 49 | AY.5 | 0.001012 |
N | 346 | F346F | ttC | ttT | 47 | 47 | AY.3 | 0.000467 |
N | 346 | F346F | ttC | ttT | 41 | 41 | AY.20 | 0.001593 |
N | 346 | F346F | ttC | ttT | 38 | 38 | B.1.206 | 0.030995 |
N | 346 | F346F | ttC | ttT | 34 | 34 | Q.8 | 0.005607 |
N | 346 | F346F | ttC | ttT | 33 | 33 | B.1.1.434 | 0.011502 |
N | 346 | F346F | ttC | ttT | 32 | 32 | AY.46.4 | 0.005264 |
N | 346 | F346F | ttC | ttT | 30 | 30 | AY.46.2 | 0.01906 |
N | 346 | F346F | ttC | ttT | 29 | 29 | AY.29 | 0.000457 |
N | 346 | F346F | ttC | ttT | 29 | 29 | AY.33 | 0.001937 |
N | 346 | F346F | ttC | ttT | 29 | 29 | B.1.221 | 0.00206 |
N | 346 | F346F | ttC | ttT | 28 | 28 | AY.120 | 0.001041 |
N | 346 | F346F | ttC | ttT | 28 | 28 | AY.4.2 | 0.000607 |
N | 346 | F346F | ttC | ttT | 28 | 28 | B.1.1.28 | 0.008715 |
N | 346 | F346F | ttC | ttT | 27 | 27 | AY.26 | 0.000764 |
N | 346 | F346S | tTc | tCc | 24 | 25 | All | 0.000005 |
N | 346 | F346S | TTc | AGc | 1 | 25 | All | 0 |
N | 346 | F346F | ttC | ttT | 25 | 25 | B.1.258 | 0.001664 |
N | 346 | F346F | ttC | ttT | 24 | 24 | B.1.243 | 0.00167 |
N | 346 | F346F | ttC | ttT | 23 | 23 | B.1.160 | 0.000717 |
N | 346 | F346F | ttC | ttT | 22 | 22 | B.1.1.214 | 0.00122 |
N | 346 | F346F | ttC | ttT | 22 | 22 | B.1.577 | 0.01512 |
N | 346 | F346del | TTC | --- | 21 | 21 | All | 0.000004 |
N | 346 | F346F | ttC | ttT | 21 | 21 | AY.101 | 0.010299 |
N | 346 | F346F | ttC | ttT | 21 | 21 | AY.46.6 | 0.001516 |
N | 346 | F346F | ttC | ttT | 21 | 21 | B.1.1.280 | 0.064815 |
N | 346 | F346F | ttC | ttT | 21 | 21 | B.1.596 | 0.00183 |
N | 346 | F346F | ttC | ttT | 20 | 20 | AY.6 | 0.000823 |
N | 346 | F346F | ttC | ttT | 20 | 20 | AY.61 | 0.002096 |
N | 346 | F346F | ttC | ttT | 20 | 20 | AY.9 | 0.001352 |
N | 346 | F346F | ttC | ttT | 19 | 19 | AY.75 | 0.001064 |
N | 346 | F346F | ttC | ttT | 18 | 18 | AY.99.2 | 0.001659 |
N | 346 | F346F | ttC | ttT | 17 | 17 | AY.116.1 | 0.005294 |
N | 346 | F346F | ttC | ttT | 16 | 16 | B.1.1.176 | 0.00703 |
N | 346 | F346F | ttC | ttT | 16 | 16 | B.1.1.372 | 0.011019 |
N | 346 | F346F | ttC | ttT | 16 | 16 | R.1 | 0.00144 |
N | 346 | F346F | ttC | ttT | 15 | 15 | AY.15 | 0.033333 |
N | 346 | F346F | ttC | ttT | 14 | 14 | AY.47 | 0.000435 |
N | 346 | F346F | ttC | ttT | 14 | 14 | AY.56 | 0.022472 |
N | 346 | F346F | ttC | ttT | 14 | 14 | B.1.400 | 0.006006 |
N | 346 | F346F | ttC | ttT | 14 | 14 | P.1.14 | 0.000669 |
N | 346 | F346F | ttC | ttT | 13 | 13 | B.1.234 | 0.001715 |
N | 346 | F346F | ttC | ttT | 13 | 13 | B.1.609 | 0.006232 |
N | 346 | F346L | ttC | ttA | 13 | 13 | Q.1 | 0.001642 |
N | 346 | F346F | ttC | ttT | 12 | 12 | AY.34 | 0.001164 |
N | 346 | F346L | ttC | ttG | 12 | 12 | AY.4 | 0.000019 |
N | 346 | F346F | ttC | ttT | 12 | 12 | AY.46 | 0.001249 |
N | 346 | F346L | Ttc | Ctc | 12 | 12 | B.1.1.7 | 0.000011 |
N | 346 | F346F | ttC | ttT | 12 | 12 | P.2 | 0.00224 |
N | 346 | F346S | tTc | tCc | 11 | 11 | AY.4 | 0.000017 |
N | 346 | F346F | ttC | ttT | 11 | 11 | B.1.1.216 | 0.009795 |
N | 346 | F346F | ttC | ttT | 11 | 11 | B.1.1.222 | 0.002244 |
N | 346 | F346F | ttC | ttT | 11 | 11 | B.1.346 | 0.014417 |
N | 346 | F346F | ttC | ttT | 11 | 11 | D.2 | 0.000825 |
N | 346 | F346F | ttC | ttT | 11 | 11 | P.1.10 | 0.002964 |
N | 346 | F346F | ttC | ttT | 11 | 11 | P.1.13 | 0.009883 |
N | 346 | F346F | ttC | ttT | 11 | 11 | Q.3 | 0.001595 |
N | 346 | F346F | ttC | ttT | 10 | 10 | AY.16 | 0.003797 |
N | 346 | F346F | ttC | ttT | 10 | 10 | B.1.177.82 | 0.004773 |
N | 346 | F346F | ttC | ttT | 10 | 10 | B.1.575 | 0.003034 |
N | 346 | F346F | ttC | ttT | 10 | 10 | P.1.15 | 0.002323 |
N | 346 | F346F | ttC | ttT | 10 | 10 | P.1.17 | 0.001618 |
N | 346 | F346F | ttC | ttT | 9 | 9 | A.21 | 0.024931 |
N | 346 | F346F | ttC | ttT | 9 | 9 | AY.106 | 0.003014 |
N | 346 | F346L | ttC | ttA | 8 | 9 | AY.39.1 | 0.000317 |
N | 346 | F346L | Ttc | Ctc | 1 | 9 | AY.39.1 | 0.00004 |
N | 346 | F346F | ttC | ttT | 9 | 9 | AY.98 | 0.000711 |
N | 346 | F346L | ttC | ttA | 5 | 9 | B.1 | 0.000046 |
N | 346 | F346L | Ttc | Ctc | 4 | 9 | B.1 | 0.000037 |
N | 346 | F346F | ttC | ttT | 9 | 9 | B.1.525 | 0.001018 |
N | 346 | F346F | ttC | ttT | 8 | 8 | AY.73 | 0.005323 |
N | 346 | F346F | ttC | ttT | 8 | 8 | B.1.1.153 | 0.008762 |
N | 346 | F346F | ttC | ttT | 8 | 8 | B.1.1.318 | 0.002414 |
N | 346 | F346F | ttC | ttT | 8 | 8 | B.1.177.83 | 0.011852 |
N | 346 | F346F | ttC | ttT | 8 | 8 | B.1.623 | 0.004292 |
N | 346 | F346F | ttC | ttT | 8 | 8 | P.1.4 | 0.007812 |
N | 346 | F346I | Ttc | Atc | 5 | 7 | All | 0.000001 |
N | 346 | F346I | TtC | AtA | 1 | 7 | All | 0 |
N | 346 | F346I | TtC | AtT | 1 | 7 | All | 0 |
N | 346 | F346F | ttC | ttT | 7 | 7 | AY.117 | 0.000592 |
N | 346 | F346F | ttC | ttT | 7 | 7 | AY.4.5 | 0.000752 |
N | 346 | F346F | ttC | ttT | 7 | 7 | AY.5.3 | 0.002362 |
N | 346 | F346F | ttC | ttT | 7 | 7 | AY.92 | 0.002011 |
N | 346 | F346F | ttC | ttT | 7 | 7 | B.1.1.284 | 0.000752 |
N | 346 | F346F | ttC | ttT | 7 | 7 | B.1.1.523 | 0.010937 |
N | 346 | F346F | ttC | ttT | 7 | 7 | B.1.177.21 | 0.000535 |
N | 346 | F346F | ttC | ttT | 7 | 7 | B.1.177.60 | 0.001529 |
N | 346 | F346F | ttC | ttT | 7 | 7 | B.1.177.81 | 0.001325 |
N | 346 | F346F | ttC | ttT | 7 | 7 | B.1.621.1 | 0.003541 |
N | 346 | F346F | ttC | ttT | 7 | 7 | C.14 | 0.030303 |
N | 346 | F346F | ttC | ttT | 7 | 7 | Q.4 | 0.003183 |
N | 346 | F346F | ttC | ttT | 6 | 6 | AY.93 | 0.001638 |
N | 346 | F346F | ttC | ttT | 6 | 6 | AZ.4 | 0.020134 |
N | 346 | F346F | ttC | ttT | 6 | 6 | B.1.1.33 | 0.002525 |
N | 346 | F346F | ttC | ttT | 6 | 6 | B.1.1.50 | 0.004073 |
N | 346 | F346F | ttC | ttT | 6 | 6 | B.1.1.63 | 0.002315 |
N | 346 | F346F | ttC | ttT | 6 | 6 | B.1.258.17 | 0.000624 |
N | 346 | F346F | ttC | ttT | 5 | 5 | AY.121 | 0.000677 |
N | 346 | F346F | ttC | ttT | 5 | 5 | AY.2 | 0.001781 |
N | 346 | F346L | Ttc | Ctc | 5 | 5 | AY.29 | 0.000079 |
N | 346 | F346F | ttC | ttT | 5 | 5 | AY.46.5 | 0.000992 |
N | 346 | F346F | ttC | ttT | 5 | 5 | B.1.1.1 | 0.001633 |
N | 346 | F346F | ttC | ttT | 5 | 5 | B.1.1.369 | 0.002231 |
N | 346 | F346F | ttC | ttT | 5 | 5 | B.1.162 | 0.025126 |
N | 346 | F346F | ttC | ttT | 5 | 5 | B.1.311 | 0.001373 |
N | 346 | F346F | ttC | ttT | 5 | 5 | B.1.36.10 | 0.023923 |
N | 346 | F346F | ttC | ttT | 5 | 5 | B.1.599 | 0.018248 |
N | 346 | F346F | ttC | ttT | 5 | 5 | B.1.628 | 0.001762 |
N | 346 | F346F | ttC | ttT | 5 | 5 | C.35 | 0.00387 |
N | 346 | F346F | ttC | ttT | 4 | 4 | A.2.5 | 0.001996 |
N | 346 | F346Y | tTc | tAc | 4 | 4 | All | 0.000001 |
N | 346 | F346F | ttC | ttT | 4 | 4 | AY.107 | 0.001864 |
N | 346 | F346F | ttC | ttT | 4 | 4 | AY.111 | 0.000733 |
N | 346 | F346F | ttC | ttT | 4 | 4 | AY.36 | 0.000593 |
N | 346 | F346F | ttC | ttT | 4 | 4 | AY.45 | 0.000487 |
N | 346 | F346F | ttC | ttT | 4 | 4 | AY.90 | 0.002738 |
N | 346 | F346F | ttC | ttT | 4 | 4 | B.1.1.306 | 0.001754 |
N | 346 | F346F | ttC | ttT | 4 | 4 | B.1.1.317 | 0.001647 |
N | 346 | F346F | ttC | ttT | 4 | 4 | B.1.1.521 | 0.02139 |
N | 346 | F346F | ttC | ttT | 4 | 4 | B.1.111 | 0.0047 |
N | 346 | F346F | ttC | ttT | 4 | 4 | B.1.177.75 | 0.004162 |
N | 346 | F346F | ttC | ttT | 4 | 4 | B.1.356 | 0.006908 |
N | 346 | F346F | ttC | ttT | 4 | 4 | B.1.36.26 | 0.011429 |
N | 346 | F346F | ttC | ttT | 3 | 3 | AY.13 | 0.000483 |
N | 346 | F346F | ttC | ttT | 3 | 3 | AY.14 | 0.000264 |
N | 346 | F346F | ttC | ttT | 3 | 3 | AY.24 | 0.001293 |
N | 346 | F346F | ttC | ttT | 3 | 3 | AY.27 | 0.000194 |
N | 346 | F346F | ttC | ttT | 3 | 3 | AY.3.1 | 0.000256 |
N | 346 | F346F | ttC | ttT | 3 | 3 | AY.30 | 0.001187 |
N | 346 | F346F | ttC | ttT | 3 | 3 | AY.37 | 0.000948 |
N | 346 | F346S | tTc | tCc | 3 | 3 | AY.39 | 0.000074 |
N | 346 | F346F | ttC | ttT | 3 | 3 | AY.39.1.1 | 0.002174 |
N | 346 | F346S | tTc | tCc | 3 | 3 | AY.44 | 0.000018 |
N | 346 | F346F | ttC | ttT | 3 | 3 | AY.51 | 0.002727 |
N | 346 | F346F | ttC | ttT | 3 | 3 | AY.54 | 0.000286 |
N | 346 | F346F | ttC | ttT | 3 | 3 | AY.59 | 0.001589 |
N | 346 | F346F | ttC | ttT | 3 | 3 | AY.7 | 0.000588 |
N | 346 | F346F | ttC | ttT | 3 | 3 | AY.75.1 | 0.000541 |
N | 346 | F346F | ttC | ttT | 3 | 3 | AY.87 | 0.002498 |
N | 346 | F346F | ttC | ttT | 3 | 3 | AZ.3 | 0.004559 |
N | 346 | F346S | tTc | tCc | 3 | 3 | B.1 | 0.000027 |
N | 346 | F346F | ttC | ttT | 3 | 3 | B.1.1.263 | 0.004673 |
N | 346 | F346F | ttC | ttT | 3 | 3 | B.1.1.312 | 0.005736 |
N | 346 | F346F | ttC | ttT | 3 | 3 | B.1.1.528 | 0.014423 |
N | 346 | F346F | ttC | ttT | 3 | 3 | B.1.177.86 | 0.00055 |
N | 346 | F346F | ttC | ttT | 3 | 3 | B.1.305 | 0.006452 |
N | 346 | F346F | ttC | ttT | 3 | 3 | B.1.497 | 0.000944 |
N | 346 | F346F | ttC | ttT | 3 | 3 | B.1.9.5 | 0.017045 |
N | 346 | F346F | ttC | ttT | 3 | 3 | P.1.12 | 0.001452 |
N | 346 | F346del | TTC | --- | 2 | 2 | 0.111111 | |
N | 346 | F346L | ttC | ttG | 1 | 2 | 0.055556 | |
N | 346 | F346L | ttC | ttA | 1 | 2 | 0.055556 | |
N | 346 | F346F | ttC | ttT | 2 | 2 | A.28 | 0.005291 |
N | 346 | F346N | TTc | AAc | 2 | 2 | All | 0 |
N | 346 | F346V | Ttc | Gtc | 2 | 2 | All | 0 |
N | 346 | F346del1 | ttC | tt- | 2 | 2 | All | 0 |
N | 346 | F346L | Ttc | Ctc | 1 | 2 | AY.103 | 0.000006 |
N | 346 | F346L | ttC | ttA | 1 | 2 | AY.103 | 0.000006 |
N | 346 | F346F | ttC | ttT | 2 | 2 | AY.34.1 | 0.00102 |
N | 346 | F346F | ttC | ttT | 2 | 2 | AY.35 | 0.000466 |
N | 346 | F346F | ttC | ttT | 2 | 2 | AY.38 | 0.000999 |
N | 346 | F346F | ttC | ttT | 2 | 2 | AY.41 | 0.000588 |
N | 346 | F346F | ttC | ttT | 2 | 2 | AY.62 | 0.000871 |
N | 346 | F346F | ttC | ttT | 2 | 2 | AY.64 | 0.00119 |
N | 346 | F346F | ttC | ttT | 2 | 2 | AY.7.1 | 0.000225 |
N | 346 | F346F | ttC | ttT | 2 | 2 | AY.97 | 0.003401 |
N | 346 | F346F | ttC | ttT | 2 | 2 | B.1.1.220 | 0.003717 |
N | 346 | F346F | ttC | ttT | 2 | 2 | B.1.1.25 | 0.001137 |
N | 346 | F346L | ttC | ttG | 2 | 2 | B.1.1.318 | 0.000604 |
N | 346 | F346del | TTC | --- | 2 | 2 | B.1.1.7 | 0.000002 |
N | 346 | F346F | ttC | ttT | 2 | 2 | B.1.160.32 | 0.008584 |
N | 346 | F346L | ttC | ttG | 2 | 2 | B.1.177 | 0.000026 |
N | 346 | F346F | ttC | ttT | 2 | 2 | B.1.177.12 | 0.000303 |
N | 346 | F346F | ttC | ttT | 2 | 2 | B.1.177.54 | 0.001213 |
N | 346 | F346F | ttC | ttT | 2 | 2 | B.1.177.7 | 0.00033 |
N | 346 | F346F | ttC | ttT | 2 | 2 | B.1.177.87 | 0.001456 |
N | 346 | F346I | Ttc | Atc | 1 | 2 | B.1.221 | 0.000071 |
N | 346 | F346I | TtC | AtT | 1 | 2 | B.1.221 | 0.000071 |
N | 346 | F346F | ttC | ttT | 2 | 2 | B.1.336 | 0.004878 |
N | 346 | F346F | ttC | ttT | 2 | 2 | B.1.351.3 | 0.001753 |
N | 346 | F346F | ttC | ttT | 2 | 2 | B.1.416 | 0.002538 |
N | 346 | F346F | ttC | ttT | 2 | 2 | B.1.480 | 0.004975 |
N | 346 | F346F | ttC | ttT | 2 | 2 | B.1.530 | 0.014286 |
N | 346 | F346F | ttC | ttT | 2 | 2 | B.1.568 | 0.002222 |
N | 346 | F346F | ttC | ttT | 2 | 2 | B.1.610 | 0.007092 |
N | 346 | F346L | Ttc | Ctc | 1 | 2 | B.1.617.2 | 0.000004 |
N | 346 | F346L | ttC | ttA | 1 | 2 | B.1.617.2 | 0.000004 |
N | 346 | F346del1 | ttC | tt- | 2 | 2 | B.1.627 | 0.00404 |
N | 346 | F346F | ttC | ttT | 2 | 2 | B.1.630 | 0.010471 |
N | 346 | F346F | ttC | ttT | 2 | 2 | B.1.631 | 0.006734 |
N | 346 | F346F | ttC | ttT | 2 | 2 | B.1.636 | 0.013423 |
N | 346 | F346F | ttC | ttT | 2 | 2 | B.1.93 | 0.001867 |
N | 346 | F346F | ttC | ttT | 2 | 2 | C.1.2 | 0.008511 |
N | 346 | F346F | ttC | ttT | 2 | 2 | C.16 | 0.002121 |
N | 346 | F346F | ttC | ttT | 2 | 2 | P.6 | 0.006289 |
N | 346 | F346L | Ttc | Ctc | 2 | 2 | U.3 | 0.007722 |
N | 346 | F346M | TtC | AtG | 1 | 1 | 0.055556 | |
N | 346 | F346W | tTC | tGG | 1 | 1 | 0.055556 | |
N | 346 | F346N | TTc | AAc | 1 | 1 | 0.055556 | |
N | 346 | F346K | TTC | AAG | 1 | 1 | 0.055556 | |
N | 346 | F346S | TTc | AGc | 1 | 1 | 0.055556 | |
N | 346 | F346R | TTC | AGG | 1 | 1 | 0.055556 | |
N | 346 | F346I | Ttc | Atc | 1 | 1 | 0.055556 | |
N | 346 | F346Y | tTc | tAc | 1 | 1 | 0.055556 | |
N | 346 | F346X | tTC | tAG | 1 | 1 | 0.055556 | |
N | 346 | F346C | tTc | tGc | 1 | 1 | 0.055556 | |
N | 346 | F346F | ttC | ttT | 1 | 1 | A.1 | 0.000282 |
N | 346 | F346F | ttC | ttT | 1 | 1 | A.2.2 | 0.001689 |
N | 346 | F346F | ttC | ttT | 1 | 1 | A.23.1 | 0.000704 |
N | 346 | F346F | ttC | ttT | 1 | 1 | AA.4 | 0.009091 |
N | 346 | F346F | ttC | ttT | 1 | 1 | AE.8 | 0.000489 |
N | 346 | F346W | tTC | tGG | 1 | 1 | All | 0 |
N | 346 | F346E | TTC | GAA | 1 | 1 | All | 0 |
N | 346 | F346K | TTC | AAG | 1 | 1 | All | 0 |
N | 346 | F346M | TtC | AtG | 1 | 1 | All | 0 |
N | 346 | F346X | tTC | tAG | 1 | 1 | All | 0 |
N | 346 | F346C | tTc | tGc | 1 | 1 | All | 0 |
N | 346 | F346R | TTC | AGG | 1 | 1 | All | 0 |
N | 346 | F346F | ttC | ttT | 1 | 1 | AM.4 | 0.003571 |
N | 346 | F346F | ttC | ttT | 1 | 1 | AP.1 | 0.001502 |
N | 346 | F346F | ttC | ttT | 1 | 1 | AY.1 | 0.000396 |
N | 346 | F346del | TTC | --- | 1 | 1 | AY.103 | 0.000006 |
N | 346 | F346F | ttC | ttT | 1 | 1 | AY.110 | 0.000113 |
N | 346 | F346F | ttC | ttT | 1 | 1 | AY.113 | 0.000142 |
N | 346 | F346F | ttC | ttT | 1 | 1 | AY.116 | 0.000287 |
N | 346 | F346L | ttC | ttG | 1 | 1 | AY.119 | 0.000035 |
N | 346 | F346F | ttC | ttT | 1 | 1 | AY.12 | 0.000316 |
N | 346 | F346F | ttC | ttT | 1 | 1 | AY.16.1 | 0.00047 |
N | 346 | F346V | Ttc | Gtc | 1 | 1 | AY.25 | 0.000006 |
N | 346 | F346F | ttC | ttT | 1 | 1 | AY.32 | 0.000532 |
N | 346 | F346S | tTc | tCc | 1 | 1 | AY.39.1 | 0.00004 |
N | 346 | F346del | TTC | --- | 1 | 1 | AY.4 | 0.000002 |
N | 346 | F346I | Ttc | Atc | 1 | 1 | AY.4 | 0.000002 |
N | 346 | F346F | ttC | ttT | 1 | 1 | AY.4.2.1 | 0.000149 |
N | 346 | F346L | ttC | ttG | 1 | 1 | AY.43 | 0.000004 |
N | 346 | F346I | Ttc | Atc | 1 | 1 | AY.44 | 0.000006 |
N | 346 | F346del | TTC | --- | 1 | 1 | AY.47 | 0.000031 |
N | 346 | F346Y | tTc | tAc | 1 | 1 | AY.5 | 0.000021 |
N | 346 | F346F | ttC | ttT | 1 | 1 | AY.55 | 0.000917 |
N | 346 | F346F | ttC | ttT | 1 | 1 | AY.57 | 0.000656 |
N | 346 | F346F | ttC | ttT | 1 | 1 | AY.63 | 0.000387 |
N | 346 | F346del | TTC | --- | 1 | 1 | AY.67 | 0.000464 |
N | 346 | F346F | ttC | ttT | 1 | 1 | AY.68 | 0.000274 |
N | 346 | F346F | ttC | ttT | 1 | 1 | AY.71 | 0.000475 |
N | 346 | F346F | ttC | ttT | 1 | 1 | AY.74 | 0.000116 |
N | 346 | F346L | Ttc | Ctc | 1 | 1 | AY.74 | 0.000116 |
N | 346 | F346F | ttC | ttT | 1 | 1 | AY.79 | 0.001211 |
N | 346 | F346F | ttC | ttT | 1 | 1 | AY.85 | 0.000427 |
N | 346 | F346F | ttC | ttT | 1 | 1 | AY.88 | 0.000884 |
N | 346 | F346F | ttC | ttT | 1 | 1 | AY.89 | 0.004902 |
N | 346 | F346F | ttC | ttT | 1 | 1 | AY.94 | 0.000443 |
N | 346 | F346L | Ttc | Ctc | 1 | 1 | AY.98.1 | 0.000048 |
N | 346 | F346F | ttC | ttT | 1 | 1 | AY.99 | 0.001049 |
N | 346 | F346del | TTC | --- | 1 | 1 | AY.99 | 0.001049 |
N | 346 | F346L | ttC | ttA | 1 | 1 | B | 0.000128 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B | 0.000128 |
N | 346 | F346Y | tTc | tAc | 1 | 1 | B.1 | 0.000009 |
N | 346 | F346del | TTC | --- | 1 | 1 | B.1 | 0.000009 |
N | 346 | F346I | Ttc | Atc | 1 | 1 | B.1 | 0.000009 |
N | 346 | F346del | TTC | --- | 1 | 1 | B.1.1 | 0.000018 |
N | 346 | F346L | Ttc | Ctc | 1 | 1 | B.1.1 | 0.000018 |
N | 346 | F346N | TTc | AAc | 1 | 1 | B.1.1 | 0.000018 |
N | 346 | F346E | TTC | GAA | 1 | 1 | B.1.1 | 0.000018 |
N | 346 | F346del | TTC | --- | 1 | 1 | B.1.1.139 | 0.022727 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.1.174 | 0.003378 |
N | 346 | F346del | TTC | --- | 1 | 1 | B.1.1.217 | 0.003636 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.1.218 | 0.007692 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.1.237 | 0.005405 |
N | 346 | F346Y | tTc | tAc | 1 | 1 | B.1.1.27 | 0.00565 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.1.277 | 0.000759 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.1.294 | 0.001266 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.1.304 | 0.002809 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.1.305 | 0.003861 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.1.316 | 0.000925 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.1.326 | 0.001761 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.1.348 | 0.000796 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.1.349 | 0.010309 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.1.375 | 0.011905 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.1.397 | 0.002252 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.1.411 | 0.014706 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.1.412 | 0.007634 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.1.46 | 0.004367 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.1.48 | 0.002874 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.1.483 | 0.038462 |
N | 346 | F346del | TTC | --- | 1 | 1 | B.1.1.519 | 0.00004 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.1.59 | 0.006494 |
N | 346 | F346S | tTc | tCc | 1 | 1 | B.1.1.7 | 0.000001 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.1.70 | 0.000341 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.1.89 | 0.006061 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.1.99 | 0.02381 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.113 | 0.015625 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.128 | 0.000635 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.157 | 0.002985 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.160.30 | 0.002976 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.163 | 0.02439 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.177.10 | 0.000878 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.177.4 | 0.000211 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.177.44 | 0.000519 |
N | 346 | F346del | TTC | --- | 1 | 1 | B.1.177.45 | 0.000381 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.177.46 | 0.000918 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.177.57 | 0.000281 |
N | 346 | F346L | TtC | CtA | 1 | 1 | B.1.177.63 | 0.002703 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.177.73 | 0.000566 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.177.74 | 0.015152 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.189 | 0.004292 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.214 | 0.003663 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.241 | 0.000812 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.258.11 | 0.000396 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.258.16 | 0.001637 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.258.3 | 0.001675 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.260 | 0.003344 |
N | 346 | F346del | TTC | --- | 1 | 1 | B.1.287 | 0.030303 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.320 | 0.001245 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.324 | 0.001605 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.329 | 0.000608 |
N | 346 | F346I | TtC | AtA | 1 | 1 | B.1.332 | 0.003497 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.348 | 0.018182 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.349 | 0.000715 |
N | 346 | F346del | TTC | --- | 1 | 1 | B.1.351 | 0.00003 |
N | 346 | F346L | ttC | ttG | 1 | 1 | B.1.351 | 0.00003 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.351.2 | 0.000303 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.359 | 0.022727 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.36.17 | 0.000494 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.36.18 | 0.00042 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.36.22 | 0.001208 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.36.31 | 0.001751 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.36.36 | 0.000602 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.369 | 0.000285 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.380 | 0.006623 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.396 | 0.000706 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.397 | 0.004854 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.398 | 0.002976 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.399 | 0.001934 |
N | 346 | F346del | TTC | --- | 1 | 1 | B.1.400 | 0.000429 |
N | 346 | F346S | tTc | tCc | 1 | 1 | B.1.400 | 0.000429 |
N | 346 | F346del | TTC | --- | 1 | 1 | B.1.415 | 0.014286 |
N | 346 | F346S | tTc | tCc | 1 | 1 | B.1.429 | 0.000024 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.438.1 | 0.000107 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.453 | 0.003236 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.460 | 0.017857 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.466.2 | 0.000391 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.499 | 0.00105 |
N | 346 | F346L | ttC | ttA | 1 | 1 | B.1.509 | 0.000866 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.517 | 0.000427 |
N | 346 | F346L | ttC | ttA | 1 | 1 | B.1.526 | 0.000024 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.527 | 0.003704 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.533 | 0.009615 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.551 | 0.00129 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.558 | 0.004566 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.576 | 0.000907 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.578 | 0.017857 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.588 | 0.00091 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.597 | 0.00463 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.617.1 | 0.000129 |
N | 346 | F346V | Ttc | Gtc | 1 | 1 | B.1.617.2 | 0.000004 |
N | 346 | F346del | TTC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.619 | 0.000871 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.620 | 0.000946 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.625 | 0.002353 |
N | 346 | F346del | TTC | --- | 1 | 1 | B.1.630 | 0.005236 |
N | 346 | F346L | Ttc | Ctc | 1 | 1 | B.1.637 | 0.000073 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.69 | 0.035714 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.1.9 | 0.006173 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.3 | 0.000831 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.4 | 0.002208 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.4.8 | 0.071429 |
N | 346 | F346F | ttC | ttT | 1 | 1 | B.40 | 0.000364 |
N | 346 | F346F | ttC | ttT | 1 | 1 | C.23 | 0.005814 |
N | 346 | F346F | ttC | ttT | 1 | 1 | C.30 | 0.001727 |
N | 346 | F346F | ttC | ttT | 1 | 1 | C.36.3 | 0.000567 |
N | 346 | F346L | Ttc | Ctc | 1 | 1 | C.36.3 | 0.000567 |
N | 346 | F346F | ttC | ttT | 1 | 1 | C.36.3.1 | 0.002717 |
N | 346 | F346L | ttC | ttA | 1 | 1 | D.2 | 0.000075 |
N | 346 | F346F | ttC | ttT | 1 | 1 | N.1 | 0.016949 |
N | 346 | F346F | ttC | ttT | 1 | 1 | N.6 | 0.007092 |
N | 346 | F346F | ttC | ttT | 1 | 1 | P.1.1 | 0.000318 |
N | 346 | F346F | ttC | ttT | 1 | 1 | P.1.2 | 0.001156 |
N | 346 | F346F | ttC | ttT | 1 | 1 | P.1.7 | 0.000319 |
N | 346 | F346F | ttC | ttT | 1 | 1 | P.1.9 | 0.004808 |
N | 346 | F346F | ttC | ttT | 1 | 1 | Q.5 | 0.016949 |
N | 346 | F346F | ttC | ttT | 1 | 1 | Q.7 | 0.001111 |
N | 346 | F346F | ttC | ttT | 1 | 1 | W.2 | 0.004831 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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