CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 344

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N344P344SnonsynCcaTca149114890.99865929303-29305
N344P344SnonsynCcATcT149120.0013413829303-29305
N344P344PsynccAccT6365380.84591229303-29305
N344P344PsynccAccG636740.11635229303-29305
N344P344PsynccAccC636240.037735829303-29305
N344P344LnonsyncCacTa5295260.99432929303-29305
N344P344LnonsyncCAcTG52920.0037807229303-29305
N344P344LnonsynCCaTTa52910.0018903629303-29305
N344P344QnonsyncCacAa220220129303-29305
N344P344TnonsynCcaAca5757129303-29305
N344P344deldelCCA---1919129303-29305
N344P344AnonsynCcaGca17160.94117629303-29305
N344P344AnonsynCcAGcT1710.058823529303-29305
N344P344del1delCca-ca530.629303-29305
N344P344del1delccAcc-520.429303-29305
N344P344RnonsyncCacGa22129303-29305
N344P344del2delCCa--a11129303-29305

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N344P344SCcaTca14891491All0.000285
N344P344SCcATcT21491All0
N344P344PccAccT538636All0.000103
N344P344PccAccG74636All0.000014
N344P344PccAccC24636All0.000005
N344P344LcCacTa526529All0.000101
N344P344LcCAcTG2529All0
N344P344LCCaTTa1529All0
N344P344SCcaTca319319AY.40.000496
N344P344PccAccT315315B.1.5960.027449
N344P344SCcaTca299299B.1.1.70.000268
N344P344QcCacAa220220All0.000042
N344P344LcCacTa137137AY.40.000213
N344P344SCcaTca135135B.1.1.5280.649038
N344P344QcCacAa123123AY.39.10.004872
N344P344SCcaTca8989B.1.617.20.000335
N344P344SCcaTca8585B.531
N344P344PccAccT8083AY.40.000125
N344P344PccAccG283AY.40.000003
N344P344PccAccC183AY.40.000002
N344P344LcCacTa5959R.10.005311
N344P344TCcaAca5757All0.000011
N344P344LcCacTa4748B.1.1.70.000042
N344P344LcCAcTG148B.1.1.70.000001
N344P344SCcaTca4747P.10.00074
N344P344SCcaTca4040B.1.1.4340.013942
N344P344LcCacTa4040B.1.2241
N344P344QcCacAa3333AY.40.000051
N344P344PccAccG3232B.1.6370.002338
N344P344SCcaTca3131AY.430.000137
N344P344PccAccT2330B.1.1.70.000021
N344P344PccAccG530B.1.1.70.000004
N344P344PccAccC230B.1.1.70.000002
N344P344SCcaTca2727B.1.4290.000635
N344P344SCcaTca2626AY.440.000158
N344P344SCcaTca2121B0.002684
N344P344delCCA---1919All0.000004
N344P344SCcaTca1919B.1.10.000345
N344P344ACcaGca1617All0.000003
N344P344ACcAGcT117All0
N344P344PccAccT1417AY.250.000084
N344P344PccAccG217AY.250.000012
N344P344PccAccC117AY.250.000006
N344P344TCcaAca1717AY.40.000026
N344P344SCcaTca1616AY.650.008529
N344P344LcCacTa1616B.1.617.20.00006
N344P344SCcaTca1515AY.1020.000398
N344P344SCcaTca1515AY.470.000467
N344P344SCcaTca1515AY.9.10.001256
N344P344SCcaTca1315B.1.20.000114
N344P344SCcATcT215B.1.20.000018
N344P344PccAccT815B.1.617.20.00003
N344P344PccAccG615B.1.617.20.000023
N344P344PccAccC115B.1.617.20.000004
N344P344SCcaTca1414AY.1000.000644
N344P344PccAccT1414AY.1190.000494
N344P344LcCacTa1313B.10.000119
N344P344PccAccT1212AY.1030.000075
N344P344LcCacTa1212AY.430.000053
N344P344SCcaTca1212B.1.621.10.00607
N344P344PccAccT1111AY.30.000109
N344P344SCcaTca1111B.1.1.4040.174603
N344P344LcCacTa1111B.1.4290.000259
N344P344SCcaTca1010AY.60.000411
N344P344QcCacAa1010B.1.1.70.000009
N344P344LcCacTa1010P.10.000158
N344P344SCcaTca1010P.1.17.10.008749
N344P344SCcaTca99AY.1030.000056
N344P344LcCacTa99AY.270.000582
N344P344SCcaTca99AY.870.007494
N344P344TCcaAca99B.1.1.70.000008
N344P344SCcaTca99B.1.177.380.09375
N344P344PccAccG99B.1.258.40.031034
N344P344SCcaTca88AD.20.001752
N344P344LcCacTa88AY.610.000838
N344P344SCcaTca88B.10.000073
N344P344LcCacTa88B.1.4270.000404
N344P344LcCacTa77AY.250.000042
N344P344SCcaTca77AY.250.000042
N344P344SCcaTca77AY.30.00007
N344P344SCcaTca77AY.450.000852
N344P344PccAccT57B.10.000046
N344P344PccAccG27B.10.000018
N344P344SCcaTca77B.1.1.3110.002507
N344P344ACcaGca77B.1.1.70.000006
N344P344LcCacTa77B.1.5960.00061
N344P344PccAccT77B.1.6210.00062
N344P344SCcaTca66A.2.30.028436
N344P344SCcaTca66AY.390.000148
N344P344SCcaTca66B.1.1.340.078947
N344P344LcCacTa66B.1.1.5180.037975
N344P344LcCacTa66B.1.351.50.003597
N344P344ACcaGca66B.1.5250.000679
N344P344QcCacAa66B.1.617.20.000023
N344P344del1Cca-ca35All0.000001
N344P344del1ccAcc-25All0
N344P344LcCacTa55AY.1000.00023
N344P344LcCacTa55AY.30.00005
N344P344SCcaTca55AY.4.20.000108
N344P344TCcaAca55AY.440.00003
N344P344PccAccT55AY.540.000477
N344P344LcCacTa55AY.9.10.000419
N344P344PccAccT45B.1.1.3370.014388
N344P344PccAccG15B.1.1.3370.003597
N344P344LcCacTa55B.1.20.000044
N344P344SCcaTca55B.1.5260.000118
N344P344SCcaTca55P.1.160.001871
N344P344LcCacTa55P.1.40.004883
N344P344QcCacAa44AY.1030.000025
N344P344LcCacTa44AY.1030.000025
N344P344SCcaTca44AY.1170.000338
N344P344LcCacTa44AY.1180.000251
N344P344QcCacAa44AY.250.000024
N344P344PccAccC24AY.430.000009
N344P344PccAccT14AY.430.000004
N344P344PccAccG14AY.430.000004
N344P344LcCacTa44AY.99.20.000369
N344P344PccAccG34AY.99.20.000276
N344P344PccAccT14AY.99.20.000092
N344P344LcCacTa44B.1.1.2140.000222
N344P344PccAccC44B.1.1.5190.000159
N344P344SCcaTca44B.1.1770.000053
N344P344LcCacTa44B.1.1770.000053
N344P344PccAccT44B.1.20.000035
N344P344QcCacAa44B.1.20.000035
N344P344SCcaTca44B.1.4990.004202
N344P344TCcaAca44B.1.617.20.000015
N344P344LcCacTa44P.1.150.000929
N344P344PccAccT33AY.1000.000138
N344P344SCcaTca33AY.3.10.000256
N344P344SCcaTca33AY.330.0002
N344P344LcCacTa33AY.390.000074
N344P344LcCacTa33AY.420.000121
N344P344SCcaTca33AY.460.000312
N344P344LcCacTa33AY.50.000062
N344P344LcCacTa33AY.750.000168
N344P344PccAccT13AY.750.000056
N344P344PccAccC13AY.750.000056
N344P344PccAccG13AY.750.000056
N344P344QcCacAa33B.10.000027
N344P344SCcaTca33B.1.1.2220.000612
N344P344TCcaAca33B.1.20.000026
N344P344LcCacTa33B.1.2430.000209
N344P344SCcaTca33B.1.360.000438
N344P344SCcaTca33B.1.5170.001281
N344P344SCcaTca33B.1.5250.000339
N344P344LcCacTa33C.370.000348
N344P344SCcaTca33L.30.010638
N344P344QcCacAa33P.10.000047
N344P344PccAccT23P.10.000032
N344P344PccAccG13P.10.000016
N344P344delCCA---220.111111
N344P344TCcaAca22A.2.50.000998
N344P344TCcaAca22AD.20.000438
N344P344RcCacGa22All0
N344P344LcCacTa22AY.1020.000053
N344P344PccAccT12AY.1020.000027
N344P344PccAccC12AY.1020.000027
N344P344LcCacTa22AY.1100.000225
N344P344QcCacAa22AY.1100.000225
N344P344SCcaTca22AY.1190.000071
N344P344SCcaTca22AY.1200.000074
N344P344LcCacTa22AY.200.000078
N344P344LcCacTa22AY.230.000139
N344P344SCcaTca22AY.230.000139
N344P344QcCacAa22AY.230.000139
N344P344PccAccG12AY.230.00007
N344P344PccAccC12AY.230.00007
N344P344LcCacTa22AY.260.000057
N344P344SCcaTca22AY.290.000032
N344P344PccAccT22AY.390.000049
N344P344delCCA---22AY.40.000003
N344P344TCcaAca22AY.420.00008
N344P344QcCacAa22AY.440.000012
N344P344SCcaTca22AY.46.10.002053
N344P344PccAccT22AY.50.000041
N344P344PccAccT22AY.610.00021
N344P344SCcaTca22AY.610.00021
N344P344QcCacAa22AY.670.000929
N344P344PccAccC22AY.700.000417
N344P344PccAccC22AY.840.000875
N344P344SCcaTca22AY.920.000575
N344P344PccAccT22AY.98.10.000097
N344P344LcCacTa22B0.000256
N344P344TCcaAca22B.10.000018
N344P344LcCacTa22B.1.10.000036
N344P344SCcaTca22B.1.1.2940.002532
N344P344PccAccC22B.1.1.3110.000716
N344P344SCcaTca22B.1.1.330.000842
N344P344SCcaTca22B.1.1.3540.008772
N344P344PccAccT12B.1.1770.000013
N344P344PccAccC12B.1.1770.000013
N344P344SCcaTca22B.1.3110.000549
N344P344SCcaTca22B.1.4270.000101
N344P344PccAccG22B.1.4270.000101
N344P344QcCacAa22B.1.4290.000047
N344P344LcCacTa22B.1.5050.008772
N344P344LcCacTa22B.1.5260.000047
N344P344SCcaTca22B.1.5750.000607
N344P344SCcaTca22B.1.6090.000959
N344P344QcCacAa22B.1.6200.001892
N344P344PccAccT22B.1.6200.001892
N344P344LcCacTa22B.400.000729
N344P344SCcaTca22C.370.000232
N344P344LcCacTa22D.20.00015
N344P344TCcaAca22P.10.000032
N344P344SCcaTca22P.1.100.000539
N344P344SCcaTca22P.1.150.000465
N344P344PccAccT22P.1.170.000324
N344P344ACcaGca110.055556
N344P344TCcaAca110.055556
N344P344del2CCa--a11All0
N344P344delCCA---11AY.1030.000006
N344P344LcCacTa11AY.1130.000142
N344P344del1ccAcc-11AY.1190.000035
N344P344LcCacTa11AY.120.000316
N344P344LcCacTa11AY.1200.000037
N344P344QcCacAa11AY.1210.000135
N344P344PccAccT11AY.140.000088
N344P344PccAccT11AY.16.10.00047
N344P344SCcaTca11AY.16.10.00047
N344P344QcCacAa11AY.190.00114
N344P344TCcaAca11AY.250.000006
N344P344ACcaGca11AY.250.000006
N344P344TCcaAca11AY.260.000028
N344P344SCcaTca11AY.260.000028
N344P344LcCacTa11AY.290.000016
N344P344PccAccT11AY.290.000016
N344P344PccAccG11AY.29.10.000221
N344P344ACcAGcT11AY.30.00001
N344P344QcCacAa11AY.30.00001
N344P344TCcaAca11AY.300.000396
N344P344PccAccT11AY.330.000067
N344P344SCcaTca11AY.340.000097
N344P344SCcaTca11AY.360.000148
N344P344LcCacTa11AY.4.20.000022
N344P344QcCacAa11AY.4.20.000022
N344P344PccAccC11AY.4.50.000107
N344P344QcCacAa11AY.430.000004
N344P344TCcaAca11AY.430.000004
N344P344LcCacTa11AY.440.000006
N344P344del1Cca-ca11AY.440.000006
N344P344PccAccG11AY.450.000122
N344P344QcCacAa11AY.450.000122
N344P344LcCacTa11AY.460.000104
N344P344PccAccC11AY.460.000104
N344P344SCcaTca11AY.46.20.000635
N344P344LcCacTa11AY.46.60.000072
N344P344SCcaTca11AY.46.60.000072
N344P344delCCA---11AY.470.000031
N344P344PccAccG11AY.470.000031
N344P344LcCacTa11AY.470.000031
N344P344SCcaTca11AY.50.000021
N344P344LcCacTa11AY.5.30.000337
N344P344TCcaAca11AY.510.000909
N344P344PccAccT11AY.60.000041
N344P344del1ccAcc-11AY.610.000105
N344P344delCCA---11AY.670.000464
N344P344SCcaTca11AY.70.000196
N344P344SCcaTca11AY.740.000116
N344P344SCcaTca11AY.750.000056
N344P344RcCacGa11AY.850.000427
N344P344LcCacTa11AY.860.00083
N344P344PccAccG11AY.9.20.000037
N344P344SCcaTca11AY.9.20.000037
N344P344SCcaTca11AY.950.000761
N344P344PccAccT11AY.980.000079
N344P344SCcaTca11AY.980.000079
N344P344LcCacTa11AY.990.001049
N344P344delCCA---11AY.990.001049
N344P344delCCA---11B.10.000009
N344P344delCCA---11B.1.10.000018
N344P344delCCA---11B.1.1.1390.022727
N344P344PccAccT11B.1.1.1760.000439
N344P344delCCA---11B.1.1.2170.003636
N344P344LcCacTa11B.1.1.2220.000204
N344P344SCcaTca11B.1.1.250.000569
N344P344LcCAcTG11B.1.1.270.00565
N344P344SCcaTca11B.1.1.2750.011236
N344P344LcCacTa11B.1.1.280.000311
N344P344SCcaTca11B.1.1.280.000311
N344P344SCcaTca11B.1.1.3060.000438
N344P344PccAccT11B.1.1.3060.000438
N344P344SCcaTca11B.1.1.370.000193
N344P344LcCacTa11B.1.1.390.00051
N344P344SCcaTca11B.1.1.390.00051
N344P344SCcaTca11B.1.1.4480.002033
N344P344SCcaTca11B.1.1.4860.001577
N344P344SCcaTca11B.1.1.500.000679
N344P344SCcaTca11B.1.1.5190.00004
N344P344delCCA---11B.1.1.5190.00004
N344P344delCCA---11B.1.1.70.000001
N344P344LcCacTa11B.1.1.700.000341
N344P344PccAccG11B.1.1340.005464
N344P344QcCacAa11B.1.1570.002985
N344P344LcCacTa11B.1.1600.000031
N344P344LcCacTa11B.1.160.160.000929
N344P344QcCacAa11B.1.1770.000013
N344P344SCcaTca11B.1.177.200.001517
N344P344LcCacTa11B.1.177.320.00135
N344P344LcCacTa11B.1.177.40.000211
N344P344LcCacTa11B.1.177.420.000894
N344P344SCcaTca11B.1.177.440.000519
N344P344del2CCa--a11B.1.177.630.002703
N344P344LcCacTa11B.1.177.820.000477
N344P344TCcaAca11B.1.177.860.000183
N344P344SCcaTca11B.1.2100.002132
N344P344SCcaTca11B.1.214.20.0006
N344P344PccAccG11B.1.2210.000071
N344P344LcCacTa11B.1.2370.004975
N344P344SCcaTca11B.1.2400.000216
N344P344PccAccT11B.1.2430.00007
N344P344QcCacAa11B.1.2500.014493
N344P344PccAccT11B.1.2580.000067
N344P344QcCacAa11B.1.2580.000067
N344P344SCcaTca11B.1.2580.000067
N344P344LcCacTa11B.1.258.170.000104
N344P344LcCacTa11B.1.2810.021739
N344P344delCCA---11B.1.2870.030303
N344P344LcCacTa11B.1.3110.000275
N344P344ACcaGca11B.1.3110.000275
N344P344delCCA---11B.1.3510.00003
N344P344PccAccT11B.1.3510.00003
N344P344SCcaTca11B.1.3510.00003
N344P344LcCacTa11B.1.360.000146
N344P344SCcaTca11B.1.3670.000792
N344P344LcCacTa11B.1.3690.000285
N344P344LcCacTa11B.1.3780.006849
N344P344PccAccT11B.1.3960.000706
N344P344SCcaTca11B.1.4090.000781
N344P344delCCA---11B.1.4150.014286
N344P344QcCacAa11B.1.4240.008065
N344P344SCcaTca11B.1.4250.002994
N344P344SCcaTca11B.1.4380.006536
N344P344QcCacAa11B.1.438.10.000107
N344P344QcCacAa11B.1.4590.004082
N344P344LcCacTa11B.1.4660.023256
N344P344LcCacTa11B.1.466.20.000391
N344P344TCcaAca11B.1.466.20.000391
N344P344SCcaTca11B.1.466.20.000391
N344P344QcCacAa11B.1.4670.04
N344P344LcCacTa11B.1.5170.000427
N344P344PccAccC11B.1.5260.000024
N344P344LcCacTa11B.1.5380.008065
N344P344SCcaTca11B.1.5610.000397
N344P344LCCaTTa11B.1.5640.000426
N344P344TCcaAca11B.1.5650.00081
N344P344LcCacTa11B.1.5950.000261
N344P344LcCacTa11B.1.595.10.005848
N344P344SCcaTca11B.1.5960.000087
N344P344del1Cca-ca11B.1.5960.000087
N344P344PccAccT11B.1.617.10.000129
N344P344LcCacTa11B.1.617.10.000129
N344P344delCCA---11B.1.617.20.000004
N344P344del1Cca-ca11B.1.617.20.000004
N344P344SCcaTca11B.1.6230.000536
N344P344delCCA---11B.1.6300.005236
N344P344LcCacTa11B.1.6370.000073
N344P344SCcaTca11B.1.6370.000073
N344P344QcCacAa11B.310.003731
N344P344PccAccT11B.350.007812
N344P344SCcaTca11B.60.00091
N344P344LcCacTa11C.160.00106
N344P344LcCacTa11C.37.10.002618
N344P344QcCacAa11D.20.000075
N344P344RcCacGa11D.20.000075
N344P344SCcaTca11D.50.004975
N344P344SCcaTca11N.30.005814
N344P344SCcaTca11P.1.10.000318
N344P344LcCacTa11P.1.120.000484
N344P344SCcaTca11P.1.140.000048
N344P344SCcaTca11P.1.70.000319
N344P344LcCacTa11P.20.000187
N344P344SCcaTca11Q.30.000145
N344P344QcCacAa11Q.80.000165
N344P344QcCacAa11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.