CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 341 | D341D | syn | gaC | gaT | 12484 | 12484 | 1 | 29294-29296 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 341 | D341D | gaC | gaT | 12484 | 12484 | All | 0.002388 |
N | 341 | D341D | gaC | gaT | 2705 | 2705 | AY.4 | 0.00421 |
N | 341 | D341D | gaC | gaT | 2396 | 2396 | B.1.1.7 | 0.002145 |
N | 341 | D341D | gaC | gaT | 845 | 845 | B.1.617.2 | 0.003182 |
N | 341 | D341D | gaC | gaT | 537 | 537 | AY.25 | 0.00323 |
N | 341 | D341D | gaC | gaT | 454 | 454 | B.1.177.12 | 0.068871 |
N | 341 | D341D | gaC | gaT | 424 | 424 | B.1.2 | 0.003733 |
N | 341 | D341D | gaC | gaT | 405 | 405 | AY.44 | 0.002465 |
N | 341 | D341D | gaC | gaT | 208 | 208 | AY.5 | 0.004295 |
N | 341 | D341D | gaC | gaT | 189 | 189 | B.1.351 | 0.005618 |
N | 341 | D341D | gaC | gaT | 185 | 185 | AY.10 | 0.098039 |
N | 341 | D341D | gaC | gaT | 178 | 178 | AY.43 | 0.000789 |
N | 341 | D341D | gaC | gaT | 175 | 175 | B.1.298 | 0.369979 |
N | 341 | D341D | gaC | gaT | 167 | 167 | P.1 | 0.002631 |
N | 341 | D341D | gaC | gaT | 160 | 160 | B.1.429 | 0.003765 |
N | 341 | D341D | gaC | gaT | 154 | 154 | AY.23 | 0.010741 |
N | 341 | D341D | gaC | gaT | 133 | 133 | AY.102 | 0.003526 |
N | 341 | D341D | gaC | gaT | 129 | 129 | B.1.1.406 | 0.837662 |
N | 341 | D341D | gaC | gaT | 128 | 128 | AY.103 | 0.000795 |
N | 341 | D341D | gaC | gaT | 124 | 124 | AY.9.2 | 0.004554 |
N | 341 | D341D | gaC | gaT | 116 | 116 | AY.98.1 | 0.005618 |
N | 341 | D341D | gaC | gaT | 115 | 115 | B.1.1.265 | 0.362776 |
N | 341 | D341D | gaC | gaT | 110 | 110 | AY.39 | 0.002718 |
N | 341 | D341D | gaC | gaT | 106 | 106 | B.1 | 0.000971 |
N | 341 | D341D | gaC | gaT | 98 | 98 | AY.3 | 0.000975 |
N | 341 | D341D | gaC | gaT | 87 | 87 | B.1.427 | 0.004393 |
N | 341 | D341D | gaC | gaT | 82 | 82 | B.1.265 | 0.104193 |
N | 341 | D341D | gaC | gaT | 80 | 80 | B.1.177 | 0.001053 |
N | 341 | D341D | gaC | gaT | 78 | 78 | P.1.16 | 0.029181 |
N | 341 | D341D | gaC | gaT | 74 | 74 | B.1.1.25 | 0.042069 |
N | 341 | D341D | gaC | gaT | 73 | 73 | AY.98 | 0.005767 |
N | 341 | D341D | gaC | gaT | 64 | 64 | B.1.1 | 0.001161 |
N | 341 | D341D | gaC | gaT | 63 | 63 | B.1.243 | 0.004384 |
N | 341 | D341D | gaC | gaT | 60 | 60 | B.1.526 | 0.00141 |
N | 341 | D341D | gaC | gaT | 58 | 58 | B.1.221 | 0.00412 |
N | 341 | D341D | gaC | gaT | 56 | 56 | B.1.160 | 0.001747 |
N | 341 | D341D | gaC | gaT | 52 | 52 | B.1.36.37 | 0.144444 |
N | 341 | D341D | gaC | gaT | 47 | 47 | AY.24 | 0.020259 |
N | 341 | D341D | gaC | gaT | 47 | 47 | AY.46 | 0.004892 |
N | 341 | D341D | gaC | gaT | 47 | 47 | B.1.637 | 0.003434 |
N | 341 | D341D | gaC | gaT | 44 | 44 | AY.4.2 | 0.000954 |
N | 341 | D341D | gaC | gaT | 42 | 42 | B.1.160.18 | 0.306569 |
N | 341 | D341D | gaC | gaT | 41 | 41 | AY.20 | 0.001593 |
N | 341 | D341D | gaC | gaT | 36 | 36 | B.1.628 | 0.012685 |
N | 341 | D341D | gaC | gaT | 34 | 34 | P.1.17 | 0.0055 |
N | 341 | D341D | gaC | gaT | 25 | 25 | AY.100 | 0.00115 |
N | 341 | D341D | gaC | gaT | 22 | 22 | AY.113 | 0.003133 |
N | 341 | D341D | gaC | gaT | 21 | 21 | AY.6 | 0.000864 |
N | 341 | D341D | gaC | gaT | 19 | 19 | AY.84 | 0.008311 |
N | 341 | D341D | gaC | gaT | 19 | 19 | B.1.1.519 | 0.000755 |
N | 341 | D341D | gaC | gaT | 18 | 18 | AY.92 | 0.005171 |
N | 341 | D341D | gaC | gaT | 18 | 18 | AY.99.2 | 0.001659 |
N | 341 | D341D | gaC | gaT | 16 | 16 | AY.47 | 0.000498 |
N | 341 | D341D | gaC | gaT | 16 | 16 | B.1.9.5 | 0.090909 |
N | 341 | D341D | gaC | gaT | 16 | 16 | Q.8 | 0.002639 |
N | 341 | D341D | gaC | gaT | 15 | 15 | AY.2 | 0.005342 |
N | 341 | D341D | gaC | gaT | 15 | 15 | AY.4.2.1 | 0.002235 |
N | 341 | D341D | gaC | gaT | 15 | 15 | B.1.36 | 0.002189 |
N | 341 | D341D | gaC | gaT | 15 | 15 | B.1.438.1 | 0.001609 |
N | 341 | D341D | gaC | gaT | 14 | 14 | AY.110 | 0.001578 |
N | 341 | D341D | gaC | gaT | 14 | 14 | B.1.621 | 0.001239 |
N | 341 | D341D | gaC | gaT | 13 | 13 | AY.116.1 | 0.004049 |
N | 341 | D341D | gaC | gaT | 13 | 13 | AY.26 | 0.000368 |
N | 341 | D341D | gaC | gaT | 13 | 13 | B.1.1.28 | 0.004046 |
N | 341 | D341D | gaC | gaT | 13 | 13 | B.1.324 | 0.020867 |
N | 341 | D341D | gaC | gaT | 13 | 13 | B.1.428 | 0.013265 |
N | 341 | D341D | gaC | gaT | 12 | 12 | AY.119 | 0.000424 |
N | 341 | D341D | gaC | gaT | 12 | 12 | AY.46.4 | 0.001974 |
N | 341 | D341D | gaC | gaT | 12 | 12 | B.1.177.21 | 0.000918 |
N | 341 | D341D | gaC | gaT | 12 | 12 | B.1.258 | 0.000799 |
N | 341 | D341D | gaC | gaT | 12 | 12 | B.1.36.38 | 0.019704 |
N | 341 | D341D | gaC | gaT | 12 | 12 | B.1.595 | 0.003132 |
N | 341 | D341D | gaC | gaT | 12 | 12 | C.37 | 0.001393 |
N | 341 | D341D | gaC | gaT | 11 | 11 | AY.1 | 0.004353 |
N | 341 | D341D | gaC | gaT | 11 | 11 | AY.29 | 0.000174 |
N | 341 | D341D | gaC | gaT | 11 | 11 | AY.33 | 0.000735 |
N | 341 | D341D | gaC | gaT | 11 | 11 | AY.46.2 | 0.006989 |
N | 341 | D341D | gaC | gaT | 11 | 11 | B.1.1.214 | 0.00061 |
N | 341 | D341D | gaC | gaT | 11 | 11 | B.1.177.6 | 0.010742 |
N | 341 | D341D | gaC | gaT | 11 | 11 | B.1.177.86 | 0.002018 |
N | 341 | D341D | gaC | gaT | 10 | 10 | AY.42 | 0.000402 |
N | 341 | D341D | gaC | gaT | 9 | 9 | AY.75.1 | 0.001623 |
N | 341 | D341D | gaC | gaT | 9 | 9 | AY.9.1 | 0.000754 |
N | 341 | D341D | gaC | gaT | 9 | 9 | B.1.177.60 | 0.001966 |
N | 341 | D341D | gaC | gaT | 9 | 9 | B.1.369 | 0.002567 |
N | 341 | D341D | gaC | gaT | 8 | 8 | AY.116 | 0.002294 |
N | 341 | D341D | gaC | gaT | 8 | 8 | AY.118 | 0.000501 |
N | 341 | D341D | gaC | gaT | 8 | 8 | AY.120 | 0.000297 |
N | 341 | D341D | gaC | gaT | 8 | 8 | AY.54 | 0.000763 |
N | 341 | D341D | gaC | gaT | 8 | 8 | AY.63 | 0.003095 |
N | 341 | D341D | gaC | gaT | 8 | 8 | B.1.1.317 | 0.003294 |
N | 341 | D341D | gaC | gaT | 8 | 8 | B.1.565 | 0.006483 |
N | 341 | D341D | gaC | gaT | 8 | 8 | B.1.575 | 0.002427 |
N | 341 | D341D | gaC | gaT | 8 | 8 | B.1.596 | 0.000697 |
N | 341 | D341D | gaC | gaT | 7 | 7 | AY.109 | 0.005178 |
N | 341 | D341D | gaC | gaT | 7 | 7 | AY.3.1 | 0.000597 |
N | 341 | D341D | gaC | gaT | 7 | 7 | AY.39.1 | 0.000277 |
N | 341 | D341D | gaC | gaT | 7 | 7 | B.1.1.523 | 0.010937 |
N | 341 | D341D | gaC | gaT | 7 | 7 | B.1.617.1 | 0.000903 |
N | 341 | D341D | gaC | gaT | 7 | 7 | P.1.14 | 0.000335 |
N | 341 | D341D | gaC | gaT | 6 | 6 | B.1.362 | 0.009245 |
N | 341 | D341D | gaC | gaT | 6 | 6 | B.1.609 | 0.002876 |
N | 341 | D341D | gaC | gaT | 5 | 5 | AY.61 | 0.000524 |
N | 341 | D341D | gaC | gaT | 5 | 5 | AY.75 | 0.00028 |
N | 341 | D341D | gaC | gaT | 5 | 5 | AZ.1 | 0.004337 |
N | 341 | D341D | gaC | gaT | 5 | 5 | B.1.1.312 | 0.00956 |
N | 341 | D341D | gaC | gaT | 5 | 5 | B.1.111 | 0.005875 |
N | 341 | D341D | gaC | gaT | 5 | 5 | B.1.332 | 0.017483 |
N | 341 | D341D | gaC | gaT | 5 | 5 | B.1.351.2 | 0.001513 |
N | 341 | D341D | gaC | gaT | 5 | 5 | C.36.3 | 0.002836 |
N | 341 | D341D | gaC | gaT | 5 | 5 | Q.1 | 0.000632 |
N | 341 | D341D | gaC | gaT | 4 | 4 | AY.108 | 0.00441 |
N | 341 | D341D | gaC | gaT | 4 | 4 | AY.27 | 0.000259 |
N | 341 | D341D | gaC | gaT | 4 | 4 | AY.46.6 | 0.000289 |
N | 341 | D341D | gaC | gaT | 4 | 4 | AY.57 | 0.002625 |
N | 341 | D341D | gaC | gaT | 4 | 4 | AY.64 | 0.002381 |
N | 341 | D341D | gaC | gaT | 4 | 4 | AY.66 | 0.004278 |
N | 341 | D341D | gaC | gaT | 4 | 4 | B.1.1.284 | 0.00043 |
N | 341 | D341D | gaC | gaT | 4 | 4 | B.1.1.325 | 0.102564 |
N | 341 | D341D | gaC | gaT | 4 | 4 | B.1.1.33 | 0.001684 |
N | 341 | D341D | gaC | gaT | 4 | 4 | B.1.1.369 | 0.001785 |
N | 341 | D341D | gaC | gaT | 4 | 4 | B.1.1.433 | 0.005698 |
N | 341 | D341D | gaC | gaT | 4 | 4 | B.1.258.17 | 0.000416 |
N | 341 | D341D | gaC | gaT | 4 | 4 | B.1.311 | 0.001098 |
N | 341 | D341D | gaC | gaT | 4 | 4 | B.1.470 | 0.005618 |
N | 341 | D341D | gaC | gaT | 4 | 4 | B.1.525 | 0.000453 |
N | 341 | D341D | gaC | gaT | 4 | 4 | N.3 | 0.023256 |
N | 341 | D341D | gaC | gaT | 3 | 3 | AY.106 | 0.001005 |
N | 341 | D341D | gaC | gaT | 3 | 3 | AY.117 | 0.000254 |
N | 341 | D341D | gaC | gaT | 3 | 3 | AY.120.1 | 0.000963 |
N | 341 | D341D | gaC | gaT | 3 | 3 | AY.37 | 0.000948 |
N | 341 | D341D | gaC | gaT | 3 | 3 | AY.5.4 | 0.00083 |
N | 341 | D341D | gaC | gaT | 3 | 3 | AY.90 | 0.002053 |
N | 341 | D341D | gaC | gaT | 3 | 3 | AY.97 | 0.005102 |
N | 341 | D341D | gaC | gaT | 3 | 3 | B.1.1.176 | 0.001318 |
N | 341 | D341D | gaC | gaT | 3 | 3 | B.1.1.189 | 0.004539 |
N | 341 | D341D | gaC | gaT | 3 | 3 | B.1.1.39 | 0.001529 |
N | 341 | D341D | gaC | gaT | 3 | 3 | B.1.177.11 | 0.005093 |
N | 341 | D341D | gaC | gaT | 3 | 3 | B.1.177.4 | 0.000633 |
N | 341 | D341D | gaC | gaT | 3 | 3 | B.1.177.81 | 0.000568 |
N | 341 | D341D | gaC | gaT | 3 | 3 | B.1.206 | 0.002447 |
N | 341 | D341D | gaC | gaT | 3 | 3 | B.1.234 | 0.000396 |
N | 341 | D341D | gaC | gaT | 3 | 3 | B.1.289 | 0.007979 |
N | 341 | D341D | gaC | gaT | 3 | 3 | B.1.36.18 | 0.001261 |
N | 341 | D341D | gaC | gaT | 3 | 3 | B.1.36.29 | 0.001552 |
N | 341 | D341D | gaC | gaT | 3 | 3 | B.1.375 | 0.002459 |
N | 341 | D341D | gaC | gaT | 3 | 3 | B.1.466.2 | 0.001174 |
N | 341 | D341D | gaC | gaT | 3 | 3 | B.1.497 | 0.000944 |
N | 341 | D341D | gaC | gaT | 3 | 3 | B.1.623 | 0.001609 |
N | 341 | D341D | gaC | gaT | 3 | 3 | C.14 | 0.012987 |
N | 341 | D341D | gaC | gaT | 3 | 3 | D.2 | 0.000225 |
N | 341 | D341D | gaC | gaT | 3 | 3 | N.5 | 0.0053 |
N | 341 | D341D | gaC | gaT | 3 | 3 | P.1.15 | 0.000697 |
N | 341 | D341D | gaC | gaT | 3 | 3 | P.1.7 | 0.000958 |
N | 341 | D341D | gaC | gaT | 3 | 3 | P.2 | 0.00056 |
N | 341 | D341D | gaC | gaT | 2 | 2 | AY.111 | 0.000366 |
N | 341 | D341D | gaC | gaT | 2 | 2 | AY.114 | 0.000462 |
N | 341 | D341D | gaC | gaT | 2 | 2 | AY.12 | 0.000632 |
N | 341 | D341D | gaC | gaT | 2 | 2 | AY.14 | 0.000176 |
N | 341 | D341D | gaC | gaT | 2 | 2 | AY.16 | 0.000759 |
N | 341 | D341D | gaC | gaT | 2 | 2 | AY.22 | 0.004184 |
N | 341 | D341D | gaC | gaT | 2 | 2 | AY.34 | 0.000194 |
N | 341 | D341D | gaC | gaT | 2 | 2 | AY.34.1 | 0.00102 |
N | 341 | D341D | gaC | gaT | 2 | 2 | AY.35 | 0.000466 |
N | 341 | D341D | gaC | gaT | 2 | 2 | AY.41 | 0.000588 |
N | 341 | D341D | gaC | gaT | 2 | 2 | AY.59 | 0.001059 |
N | 341 | D341D | gaC | gaT | 2 | 2 | AY.62 | 0.000871 |
N | 341 | D341D | gaC | gaT | 2 | 2 | AY.74 | 0.000231 |
N | 341 | D341D | gaC | gaT | 2 | 2 | AY.88 | 0.001768 |
N | 341 | D341D | gaC | gaT | 2 | 2 | AY.9.2.1 | 0.003953 |
N | 341 | D341D | gaC | gaT | 2 | 2 | AY.99 | 0.002099 |
N | 341 | D341D | gaC | gaT | 2 | 2 | B | 0.000256 |
N | 341 | D341D | gaC | gaT | 2 | 2 | B.1.1.192 | 0.004619 |
N | 341 | D341D | gaC | gaT | 2 | 2 | B.1.1.220 | 0.003717 |
N | 341 | D341D | gaC | gaT | 2 | 2 | B.1.1.237 | 0.010811 |
N | 341 | D341D | gaC | gaT | 2 | 2 | B.1.1.263 | 0.003115 |
N | 341 | D341D | gaC | gaT | 2 | 2 | B.1.1.318 | 0.000604 |
N | 341 | D341D | gaC | gaT | 2 | 2 | B.1.1.335 | 0.025974 |
N | 341 | D341D | gaC | gaT | 2 | 2 | B.1.1.372 | 0.001377 |
N | 341 | D341D | gaC | gaT | 2 | 2 | B.1.1.378 | 0.014599 |
N | 341 | D341D | gaC | gaT | 2 | 2 | B.1.1.448 | 0.004065 |
N | 341 | D341D | gaC | gaT | 2 | 2 | B.1.1.50 | 0.001358 |
N | 341 | D341D | gaC | gaT | 2 | 2 | B.1.1.522 | 0.034483 |
N | 341 | D341D | gaC | gaT | 2 | 2 | B.1.147 | 0.001512 |
N | 341 | D341D | gaC | gaT | 2 | 2 | B.1.160.13 | 0.055556 |
N | 341 | D341D | gaC | gaT | 2 | 2 | B.1.177.58 | 0.002663 |
N | 341 | D341D | gaC | gaT | 2 | 2 | B.1.214.2 | 0.001199 |
N | 341 | D341D | gaC | gaT | 2 | 2 | B.1.36.17 | 0.000988 |
N | 341 | D341D | gaC | gaT | 2 | 2 | B.1.505 | 0.008772 |
N | 341 | D341D | gaC | gaT | 2 | 2 | B.1.576 | 0.001813 |
N | 341 | D341D | gaC | gaT | 2 | 2 | B.1.580 | 0.00813 |
N | 341 | D341D | gaC | gaT | 2 | 2 | B.1.621.1 | 0.001012 |
N | 341 | D341D | gaC | gaT | 2 | 2 | B.1.638 | 0.105263 |
N | 341 | D341D | gaC | gaT | 2 | 2 | B.1.9.4 | 0.01227 |
N | 341 | D341D | gaC | gaT | 2 | 2 | B.4.7 | 0.020202 |
N | 341 | D341D | gaC | gaT | 2 | 2 | R.1 | 0.00018 |
N | 341 | D341D | gaC | gaT | 1 | 1 | 0.055556 | |
N | 341 | D341D | gaC | gaT | 1 | 1 | A | 0.000387 |
N | 341 | D341D | gaC | gaT | 1 | 1 | A.1 | 0.000282 |
N | 341 | D341D | gaC | gaT | 1 | 1 | A.2.5 | 0.000499 |
N | 341 | D341D | gaC | gaT | 1 | 1 | A.2.5.3 | 0.010309 |
N | 341 | D341D | gaC | gaT | 1 | 1 | AD.2 | 0.000219 |
N | 341 | D341D | gaC | gaT | 1 | 1 | AY.105 | 0.000643 |
N | 341 | D341D | gaC | gaT | 1 | 1 | AY.121 | 0.000135 |
N | 341 | D341D | gaC | gaT | 1 | 1 | AY.13 | 0.000161 |
N | 341 | D341D | gaC | gaT | 1 | 1 | AY.16.1 | 0.00047 |
N | 341 | D341D | gaC | gaT | 1 | 1 | AY.29.1 | 0.000221 |
N | 341 | D341D | gaC | gaT | 1 | 1 | AY.30 | 0.000396 |
N | 341 | D341D | gaC | gaT | 1 | 1 | AY.32 | 0.000532 |
N | 341 | D341D | gaC | gaT | 1 | 1 | AY.36 | 0.000148 |
N | 341 | D341D | gaC | gaT | 1 | 1 | AY.38 | 0.000499 |
N | 341 | D341D | gaC | gaT | 1 | 1 | AY.4.1 | 0.000737 |
N | 341 | D341D | gaC | gaT | 1 | 1 | AY.4.4 | 0.000409 |
N | 341 | D341D | gaC | gaT | 1 | 1 | AY.4.5 | 0.000107 |
N | 341 | D341D | gaC | gaT | 1 | 1 | AY.46.3 | 0.000934 |
N | 341 | D341D | gaC | gaT | 1 | 1 | AY.46.5 | 0.000198 |
N | 341 | D341D | gaC | gaT | 1 | 1 | AY.49 | 0.003195 |
N | 341 | D341D | gaC | gaT | 1 | 1 | AY.5.3 | 0.000337 |
N | 341 | D341D | gaC | gaT | 1 | 1 | AY.50 | 0.000799 |
N | 341 | D341D | gaC | gaT | 1 | 1 | AY.51 | 0.000909 |
N | 341 | D341D | gaC | gaT | 1 | 1 | AY.53 | 0.000288 |
N | 341 | D341D | gaC | gaT | 1 | 1 | AY.55 | 0.000917 |
N | 341 | D341D | gaC | gaT | 1 | 1 | AY.60 | 0.000938 |
N | 341 | D341D | gaC | gaT | 1 | 1 | AY.68 | 0.000274 |
N | 341 | D341D | gaC | gaT | 1 | 1 | AY.69 | 0.000187 |
N | 341 | D341D | gaC | gaT | 1 | 1 | AY.7.1 | 0.000113 |
N | 341 | D341D | gaC | gaT | 1 | 1 | AY.73 | 0.000665 |
N | 341 | D341D | gaC | gaT | 1 | 1 | AY.82 | 0.001357 |
N | 341 | D341D | gaC | gaT | 1 | 1 | AY.85 | 0.000427 |
N | 341 | D341D | gaC | gaT | 1 | 1 | AY.86 | 0.00083 |
N | 341 | D341D | gaC | gaT | 1 | 1 | AY.87 | 0.000833 |
N | 341 | D341D | gaC | gaT | 1 | 1 | AY.9 | 0.000068 |
N | 341 | D341D | gaC | gaT | 1 | 1 | AY.91 | 0.00073 |
N | 341 | D341D | gaC | gaT | 1 | 1 | AY.93 | 0.000273 |
N | 341 | D341D | gaC | gaT | 1 | 1 | AY.99.1 | 0.001553 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.1.1 | 0.000327 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.1.117 | 0.009709 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.1.133 | 0.008475 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.1.161 | 0.003534 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.1.164 | 0.005155 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.1.224 | 0.014286 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.1.228 | 0.003049 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.1.231 | 0.003096 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.1.234 | 0.012048 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.1.277 | 0.000759 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.1.291 | 0.000742 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.1.294 | 0.001266 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.1.306 | 0.000438 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.1.327 | 0.1 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.1.336 | 0.016667 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.1.348 | 0.000796 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.1.368 | 0.003086 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.1.37 | 0.000193 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.1.375 | 0.011905 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.1.397 | 0.002252 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.1.41 | 0.006329 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.1.420 | 0.001006 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.1.434 | 0.000349 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.1.458 | 0.041667 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.1.47 | 0.005348 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.1.487 | 0.005587 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.1.54 | 0.003021 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.1.57 | 0.011494 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.1.63 | 0.000386 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.1.70 | 0.000341 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.110.3 | 0.000718 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.160.15 | 0.00495 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.160.22 | 0.006757 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.160.7 | 0.002079 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.177.32 | 0.00135 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.177.35 | 0.000691 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.177.46 | 0.000918 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.177.54 | 0.000606 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.177.57 | 0.000281 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.177.80 | 0.001912 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.224 | 0.025 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.240 | 0.000216 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.247 | 0.014925 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.258.11 | 0.000396 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.284 | 0.013158 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.333 | 0.010526 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.340 | 0.004292 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.351.3 | 0.000876 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.36.35 | 0.002604 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.378 | 0.006849 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.389 | 0.001002 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.396 | 0.000706 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.416 | 0.001269 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.423 | 0.010204 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.433 | 0.003195 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.443 | 0.004673 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.468 | 0.005714 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.469 | 0.00361 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.483 | 0.111111 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.499 | 0.00105 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.509 | 0.000866 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.527 | 0.003704 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.530 | 0.007143 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.540 | 0.009709 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.551 | 0.00129 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.561 | 0.000397 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.564.1 | 0.001577 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.566 | 0.019231 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.591 | 0.010638 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.597 | 0.00463 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.602 | 0.006536 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.619.1 | 0.000641 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.625 | 0.002353 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.1.84 | 0.020833 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.39 | 0.002331 |
N | 341 | D341D | gaC | gaT | 1 | 1 | B.4 | 0.002208 |
N | 341 | D341D | gaC | gaT | 1 | 1 | C.1 | 0.002392 |
N | 341 | D341D | gaC | gaT | 1 | 1 | C.16 | 0.00106 |
N | 341 | D341D | gaC | gaT | 1 | 1 | C.36 | 0.000911 |
N | 341 | D341D | gaC | gaT | 1 | 1 | C.36.3.1 | 0.002717 |
N | 341 | D341D | gaC | gaT | 1 | 1 | L.3 | 0.003546 |
N | 341 | D341D | gaC | gaT | 1 | 1 | P.1.1 | 0.000318 |
N | 341 | D341D | gaC | gaT | 1 | 1 | P.1.12 | 0.000484 |
N | 341 | D341D | gaC | gaT | 1 | 1 | P.1.4 | 0.000977 |
N | 341 | D341D | gaC | gaT | 1 | 1 | P.1.6 | 0.001946 |
N | 341 | D341D | gaC | gaT | 1 | 1 | P.1.8 | 0.004785 |
N | 341 | D341D | gaC | gaT | 1 | 1 | Q.4 | 0.000455 |
N | 341 | D341D | gaC | gaT | 1 | 1 | Q.6 | 0.006623 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|